Transcript 10161 | MetamORF

Transcript

ID CARD

MetamORF ID

10161

ENST00000541351

Name

YBX3-211

Strand

Biotype

processed_transcript

Start-end positions

10701275-10710714

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

ACA ...

Genome browsers

UCSC

Gene

HGNC:2428

Aliases

CSDA,
CSDA1, dbpA, ENSG00000060138,
HGNC:2428, NCBI:8531, OFF:YBX3,
YBX3, ZONAB

Chr 12

ORFs

14 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1095369	156	CTG ...	LPQ ...	Ribo-seq	CTG		8	sORFs_org_Human	ncRNA sORF	Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa
1321125	219	CTG ...	LLA ...	Ribo-seq	CTG		1	sORFs_org_Human	ncRNA sORF	HEK293
10160	87	CTG ...	LFA ...	Ribo-seq	CTG		13	sORFs_org_Human	ncRNA sORF	Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, RPE-1, U2OS
3201496	51	GCA ...	APT ...	Ribo-seq	GCA	moderate	1	sORFs_org_Human	ncRNA sORF	HEK293
10163	105	GTG ...	VVQ ...	Ribo-seq	GTG		22	sORFs_org_Human	ncRNA sORF	Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, LCL, RPE-1, U2OS
306170	81	ATG ...	MES ...	Ribo-seq	ATG		16	sORFs_org_Human	ncRNA sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1
485548	300	GTG ...	VGQ ...	Ribo-seq	GTG		1	sORFs_org_Human	ncRNA sORF	HEK293T
536548	144	TTG ...	LER ...	Ribo-seq	TTG		12	sORFs_org_Human	ncRNA sORF	Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, RPE-1, U2OS
1321123	216	TTG ...	LAP ...	Ribo-seq	TTG		1	sORFs_org_Human	ncRNA sORF	HEK293
536546	135	CTG ...	LKI ...	Ribo-seq	CTG		16	sORFs_org_Human	ncRNA sORF	Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, RPE-1, U2OS
412752	285	GAC ...	DRR ...	Ribo-seq	GAC		1	sORFs_org_Human	ncRNA sORF	HCT116
1209742	192	GTG ...	VFP ...	Ribo-seq	GTG		3	sORFs_org_Human	ncRNA sORF	HAP1, HEK293, HeLa
3187698	69	AGG ...	REH ...	Ribo-seq	AGG		1	sORFs_org_Human	ncRNA sORF	HEK293
536542	78	GTG ...	VDT ...	Ribo-seq	GTG		10	sORFs_org_Human	ncRNA sORF	Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, RPE-1, U2OS

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