Transcript 101238

Transcript

ID CARD

MetamORF ID

101238

ENST00000531658

Name

C11orf58-210

Strand

Biotype

retained_intron

Start-end positions

16749114-16755347

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

ATT ...

Genome browsers

UCSC

Gene

HGNC:16990

Aliases

C11orf58,
ENSG00000110696, HGNC:16990, NCBI:10944,
OFF:C11orf58, SMAP

Chr 11

ORFs

30 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
101240	177	CTG ...	LEM ...	Ribo-seq	CTG	moderate	2	sORFs_org_Human	Intronic sORF	HEK293
904842	159	AGT ...	SPD ...	Ribo-seq	AGT	moderate	1	sORFs_org_Human	Intronic sORF	Jurkat
101262	75	GTG ...	VED ...	Ribo-seq	GTG	strong	11	sORFs_org_Human	Intronic sORF	Brain, HEK293, HeLa, hES, HFF
406908	129	CAG ...	QMI ...	Ribo-seq	CAG	moderate	2	sORFs_org_Human	Intronic sORF	HCT116, Jurkat
283555	33	TTG ...	LLQ ...	Ribo-seq	TTG	weak	2	sORFs_org_Human	Intronic sORF	HeLa, LCL
101256	138	CTG ...	LKV ...	Ribo-seq	CTG	moderate	4	sORFs_org_Human	Intronic sORF	HEK293, hES
101244	168	ATG ...	MMM ...	Ribo-seq	ATG	moderate	2	sORFs_org_Human	Intronic sORF	HEK293
904851	39	AAT ...	NYK ...	Ribo-seq	AAT	moderate	1	sORFs_org_Human	Intronic sORF	Jurkat
406904	72	ATC ...	ISK ...	Ribo-seq	ATC		1	sORFs_org_Human	Intronic sORF	HCT116
1094522	198	ATG ...	MME ...	Ribo-seq	ATG	moderate	1	sORFs_org_Human	Intronic sORF	HEK293
2903827	30	TTG ...	LID ...	Ribo-seq	TTG		1	sORFs_org_Human	Intronic sORF	HeLa
101260	120	CTG ...	LKA ...	Ribo-seq	CTG	moderate	2	sORFs_org_Human	Intronic sORF	HEK293
406910	141	AGC ...	SDS ...	Ribo-seq	AGC	strong	1	sORFs_org_Human	Intronic sORF	HCT116
904845	144	GAA ...	ESD ...	Ribo-seq	GAA	weak	1	sORFs_org_Human	Intronic sORF	Jurkat
101246	165	ATG ...	MMT ...	Ribo-seq	ATG	moderate	2	sORFs_org_Human	Intronic sORF	HEK293
904838	78	CTC ...	LNI ...	Ribo-seq	CTC		1	sORFs_org_Human	Intronic sORF	Jurkat
101242	171	ATG ...	MMM ...	Ribo-seq	ATG	moderate	2	sORFs_org_Human	Intronic sORF	HEK293
904840	204	AAG ...	KTM ...	Ribo-seq	AAG	weak	1	sORFs_org_Human	Intronic sORF	Jurkat
101258	126	ATG ...	MIL ...	Ribo-seq	ATG	weak	2	sORFs_org_Human	Intronic sORF	HEK293
904847	30	TTC ...	FRV ...	Ribo-seq	TTC	weak	2	sORFs_org_Human	Intronic sORF	HEK293, Jurkat
2903825	33	CTG ...	LLI ...	Ribo-seq	CTG		1	sORFs_org_Human	Intronic sORF	HeLa
406906	228	GAC ...	DHD ...	Ribo-seq	GAC	moderate	1	sORFs_org_Human	Intronic sORF	HCT116
904849	120	GAA ...	EES ...	Ribo-seq	GAA	strong	1	sORFs_org_Human	Intronic sORF	Jurkat
101237	207	GTG ...	VAG ...	Ribo-seq	GTG	strong	6	sORFs_org_Human	Intronic sORF	Brain, HEK293, HeLa
904836	39	AGA ...	RTG ...	Ribo-seq	AGA	weak	1	sORFs_org_Human	Intronic sORF	Jurkat
101248	162	ATG ...	MTM ...	Ribo-seq	ATG	moderate	2	sORFs_org_Human	Intronic sORF	HEK293
101252	153	ATG ...	MIH ...	Ribo-seq	ATG	moderate	3	sORFs_org_Human	Intronic sORF	HEK293
101254	144	CTG ...	LIL ...	Ribo-seq	CTG	weak	4	sORFs_org_Human	Intronic sORF	HEK293, hES
101250	156	ATG ...	MMI ...	Ribo-seq	ATG	moderate	3	sORFs_org_Human	Intronic sORF	HEK293
1094524	195	ATG ...	MEK ...	Ribo-seq	ATG	strong	1	sORFs_org_Human	Intronic sORF	HEK293

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