Transcript 101068

Transcript

ID CARD

MetamORF ID

101068

ENST00000529898

Name

CTR9-205

Strand

Biotype

retained_intron

Start-end positions

10772507-10774309

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

TGA ...

Genome browsers

UCSC

Gene

HGNC:16850

Aliases

CTR9,
ENSG00000198730, HGNC:16850, KIAA0155,
NCBI:9646, OFF:CTR9, p150TSP,
SH2BP1, TSBP

Chr 11

ORFs

25 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1504478	78	ATG ...	MWP ...	Ribo-seq	ATG	moderate	2	sORFs_org_Human	Intronic sORF	BJ, MDA-MB-231
406798	147	GGA ...	GEF ...	Ribo-seq	GGA	strong	1	sORFs_org_Human	Intronic sORF	HCT116
1504481	54	ATG ...	MKK ...	Ribo-seq	ATG	moderate	3	sORFs_org_Human	Intronic sORF	BJ, HEK293, MDA-MB-231
283254	105	GTG ...	VEK ...	Ribo-seq	GTG		7	sORFs_org_Human	Intronic sORF	HEK293, hES, HFF, LCL, RPE-1
283258	54	GTG ...	VRL ...	Ribo-seq	GTG		1	sORFs_org_Human	Intronic sORF	LCL
283268	153	TTG ...	LSM ...	Ribo-seq	TTG	moderate	1	sORFs_org_Human	Intronic sORF	LCL
283264	162	TTG ...	LMN ...	Ribo-seq	TTG	moderate	1	sORFs_org_Human	Intronic sORF	LCL
283266	159	ATG ...	MNL ...	Ribo-seq	ATG	weak	1	sORFs_org_Human	Intronic sORF	LCL
283256	57	CTG ...	LVR ...	Ribo-seq	CTG		1	sORFs_org_Human	Intronic sORF	LCL
1094367	153	CTG ...	LSQ ...	Ribo-seq	CTG		6	sORFs_org_Human	Intronic sORF	BJ, HEK293, hES, HFF
406800	57	CAA ...	QEG ...	Ribo-seq	CAA	strong	1	sORFs_org_Human	Intronic sORF	HCT116
283262	195	TTG ...	LDF ...	Ribo-seq	TTG		1	sORFs_org_Human	Intronic sORF	LCL
1007572	132	GTG ...	VAR ...	Ribo-seq	GTG		7	sORFs_org_Human	Intronic sORF	BJ, guo_2014, HEK293, hES, HFF
1007574	93	CTG ...	LRA ...	Ribo-seq	CTG		5	sORFs_org_Human	Intronic sORF	guo_2014, HEK293, hES, HFF
283274	138	CTG ...	LMM ...	Ribo-seq	CTG	moderate	1	sORFs_org_Human	Intronic sORF	LCL
283260	48	CTG ...	LKQ ...	Ribo-seq	CTG		1	sORFs_org_Human	Intronic sORF	LCL
904357	126	AAT ...	NDD ...	Ribo-seq	AAT	strong	1	sORFs_org_Human	Intronic sORF	Jurkat
904355	159	GAC ...	DLL ...	Ribo-seq	GAC		1	sORFs_org_Human	Intronic sORF	Jurkat
101067	63	CTG ...	LLR ...	Ribo-seq	CTG		2	sORFs_org_Human	Intronic sORF	guo_2014, HEK293
283250	126	TTG ...	LEQ ...	Ribo-seq	TTG		7	sORFs_org_Human	Intronic sORF	HEK293, hES, HFF, LCL, RPE-1
406796	141	GTC ...	VSE ...	Ribo-seq	GTC		1	sORFs_org_Human	Intronic sORF	HCT116
283276	135	ATG ...	MMT ...	Ribo-seq	ATG	weak	1	sORFs_org_Human	Intronic sORF	LCL
283270	147	ATG ...	MMT ...	Ribo-seq	ATG	weak	1	sORFs_org_Human	Intronic sORF	LCL
283252	90	ATG ...	MWR ...	Ribo-seq	ATG		1	sORFs_org_Human	Intronic sORF	LCL
283272	144	ATG ...	MTL ...	Ribo-seq	ATG	moderate	1	sORFs_org_Human	Intronic sORF	LCL

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