Metam
ORF

Logo

Transcript

Transcript

ID CARD

MetamORF ID

100976

ID

ENST00000528657

Name

TPP1-209

Strand

-

Biotype

protein_coding

Start-end positions

6618729-6619422

CDS Start-stop positions

6619192-6619400

CDS Relative positions

-

Sequences

Transcript sequence

AGC ...

Gene

ID

HGNC:2073

Aliases

CLN2,
ENSG00000166340, HGNC:2073, NCBI:1200,
OFF:TPP1, SCAR7, TPP1


Chr 11

ORFs

21 ORFs

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
lenght

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start
codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

100978 135

CTG ...

LGR ...

Ribo-seq
CTG moderate 23 sORFs_org_Human
    Alternative
    Downstream
    sORF
BJ, Blood, Brain,
guo_2014, HAP1, HEK293,
HeLa, hES, HFF,
LCL, MDA-MB-231, MM1S,
Monocyte, RPE-1, THP-1,
U2OS
3312469 93

ATG ...

MGL ...

Predicted
ATG 1 Mackowiak2015
    CDS
    sORF
904056 126

GCG ...

ADP ...

Ribo-seq
GCG moderate 1 sORFs_org_Human
    Alternative
    Downstream
    sORF
Jurkat
633791 57

CTG ...

LAN ...

Ribo-seq
CTG moderate 9 sORFs_org_Human
    Alternative
    Downstream
    Overlapping
    sORF
BJ, Brain, HeLa,
hES, MM1S, RPE-1,
THP-1
282883 45

GTG ...

VSD ...

Ribo-seq
GTG moderate 11 sORFs_org_Human
    Alternative
    Downstream
    sORF
BJ, Brain, HeLa,
hES, LCL, MM1S,
Monocyte, RPE-1, THP-1,
U2OS
633793 72

TTG ...

LPS ...

Ribo-seq
TTG weak 9 sORFs_org_Human
    Alternative
    Downstream
    Overlapping
    sORF
BJ, Brain, HeLa,
hES, MDA-MB-231, MM1S,
RPE-1, THP-1
904062 30

AAT ...

NGT ...

Ribo-seq
AAT 1 sORFs_org_Human
    Overlapping
    sORF
    Upstream
Jurkat
282889 75

GTG ...

VER ...

Ribo-seq
GTG strong 13 sORFs_org_Human
    Alternative
    Downstream
    sORF
BJ, Blood, Brain,
guo_2014, HeLa, hES,
LCL, MM1S, Monocyte,
RPE-1, THP-1, U2OS
904054 51

CAG ...

QAV ...

Ribo-seq
CAG strong 1 sORFs_org_Human
    Alternative
    Downstream
    sORF
Jurkat
100975 108

CTG ...

LSL ...

Ribo-seq
CTG moderate 21 sORFs_org_Human
    Alternative
    Downstream
    sORF
BJ, Blood, Brain,
guo_2014, HAP1, HEK293,
HeLa, hES, HFF,
LCL, MDA-MB-231, MM1S,
Monocyte, RPE-1, THP-1,
U2OS
282885 54

GTG ...

VQA ...

Ribo-seq
GTG weak 12 sORFs_org_Human
    Alternative
    Downstream
    sORF
BJ, Brain, guo_2014,
HeLa, hES, LCL,
MM1S, Monocyte, RPE-1,
THP-1, U2OS
904058 57

CCT ...

PLW ...

Ribo-seq
CCT weak 1 sORFs_org_Human
    Alternative
    Downstream
    Overlapping
    sORF
Jurkat
282891 90

CTG ...

LRQ ...

Ribo-seq
CTG moderate 17 sORFs_org_Human
    Alternative
    Downstream
    sORF
BJ, Blood, Brain,
guo_2014, HAP1, HEK293T,
HeLa, hES, HFF,
LCL, MM1S, Monocyte,
RPE-1, THP-1, U2OS
633787 54

CTG ...

LTL ...

Ribo-seq
CTG weak 6 sORFs_org_Human
    Downstream
    sORF
BJ, Brain, hES,
RPE-1, THP-1
282896 30

CTG ...

LGV ...

Ribo-seq
CTG strong 13 sORFs_org_Human
    Downstream
    sORF
BJ, Blood, Brain,
HEK293, hES, HFF,
LCL, MDA-MB-231, MM1S,
RPE-1, THP-1
100982 156

CTG ...

LPP ...

Ribo-seq
CTG moderate 22 sORFs_org_Human
    Alternative
    Downstream
    sORF
BJ, Blood, Brain,
guo_2014, HAP1, HEK293,
HeLa, hES, HFF,
LCL, MDA-MB-231, MM1S,
RPE-1, THP-1, U2OS
633789 45

ATG ...

MQL ...

Ribo-seq
ATG weak 9 sORFs_org_Human
    Alternative
    Downstream
    Overlapping
    sORF
BJ, Brain, HeLa,
hES, MDA-MB-231, MM1S,
RPE-1, THP-1
904060 210

GAC ...

DSK ...

Ribo-seq
GAC 1 sORFs_org_Human
    Alternative
    Downstream
    Overlapping
    sORF
Jurkat
1504289 72

CTG ...

LTP ...

Ribo-seq
CTG weak 1 sORFs_org_Human
    Alternative
    Downstream
    sORF
BJ
100980 141

GTG ...

VSL ...

Ribo-seq
GTG weak 23 sORFs_org_Human
    Alternative
    Downstream
    sORF
BJ, Blood, Brain,
guo_2014, HAP1, HEK293,
HeLa, hES, HFF,
LCL, MDA-MB-231, MM1S,
Monocyte, RPE-1, THP-1,
U2OS
282887 57

CTG ...

LVQ ...

Ribo-seq
CTG strong 13 sORFs_org_Human
    Alternative
    Downstream
    sORF
BJ, Blood, Brain,
guo_2014, HeLa, hES,
LCL, MM1S, Monocyte,
RPE-1, THP-1, U2OS

Export data

Identification method

Predicted

Ribo-seq

MS

Kozak context

moderate

weak

strong

optimal

Start Codon

ORF length

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

B_cell

BJ

Blood

Brain

Brain_tumor

Breast

Flp-In_T-REx-293

guo_2014

HAP1

HCT116

HEK293

HEK293T

HeLa

hES

HFF

Jurkat

LCL

loayza_puch_2016

MDA-MB-231

MM1S

Monocyte

NCCIT

RPE-1

Skeletal_muscle

THP-1

U2OS