Transcript 100963

Transcript

ID CARD

MetamORF ID

100963

ENST00000534644

Name

TPP1-216

Strand

Biotype

processed_transcript

Start-end positions

6617011-6619409

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

AAG ...

Genome browsers

UCSC

Gene

HGNC:2073

Aliases

CLN2,
ENSG00000166340, HGNC:2073, NCBI:1200,
OFF:TPP1, SCAR7, TPP1

Chr 11

ORFs

11 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
100962	90	GTG ...	VQK ...	Ribo-seq	GTG		2	sORFs_org_Human	ncRNA sORF	HEK293, HeLa
100957	45	GTG ...	VIT ...	Ribo-seq	GTG		1	sORFs_org_Human	ncRNA sORF	HeLa
282869	33	ATG ...	MWE ...	Ribo-seq	ATG	moderate	1	sORFs_org_Human	ncRNA sORF	Monocyte
100960	75	TTG ...	LAA ...	Ribo-seq	TTG		1	sORFs_org_Human	ncRNA sORF	HeLa
100973	147	CTG ...	LTL ...	Ribo-seq	CTG		1	sORFs_org_Human	ncRNA sORF	HeLa
100971	132	GTG ...	VAD ...	Ribo-seq	GTG		2	sORFs_org_Human	ncRNA sORF	HEK293, HeLa
282871	48	CTG ...	LSF ...	Ribo-seq	CTG	moderate	1	sORFs_org_Human	ncRNA sORF	Monocyte
100967	120	GTG ...	VRP ...	Ribo-seq	GTG		2	sORFs_org_Human	ncRNA sORF	HEK293, HeLa
282873	54	CTG ...	LGL ...	Ribo-seq	CTG	moderate	1	sORFs_org_Human	ncRNA sORF	Monocyte
100965	105	CTG ...	LTL ...	Ribo-seq	CTG		2	sORFs_org_Human	ncRNA sORF	HEK293, HeLa
100969	123	CTG ...	LVR ...	Ribo-seq	CTG		2	sORFs_org_Human	ncRNA sORF	HEK293, HeLa

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