Transcript 100356

Transcript

ID CARD

MetamORF ID

100356

ENST00000490740

Name

XPNPEP1-214

Strand

Biotype

processed_transcript

Start-end positions

109886266-109923431

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GGC ...

Genome browsers

UCSC

Gene

HGNC:12822

Aliases

ENSG00000108039,
HGNC:12822, NCBI:7511, OFF:XPNPEP1,
XPNPEP, XPNPEP1, XPNPEPL,
XPNPEPL1

Chr 10

ORFs

5 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1315472	240	GTG ...	VTH ...	Ribo-seq	GTG		2	sORFs_org_Human	ncRNA sORF	HEK293, hES
100355	294	GTG ...	VNH ...	Ribo-seq	GTG		5	sORFs_org_Human	ncRNA sORF	HEK293, HeLa, hES
898825	33	GCA ...	AAS ...	Ribo-seq	GCA		4	sORFs_org_Human	ncRNA sORF	HEK293, HeLa, Jurkat, THP-1
1315469	216	GTG ...	VET ...	Ribo-seq	GTG		1	sORFs_org_Human	ncRNA sORF	HEK293
1135770	273	CTG ...	LRN ...	Ribo-seq	CTG		3	sORFs_org_Human	ncRNA sORF	HEK293, hES

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