Metam
ORF

Logo

Gene

Gene

ID CARD

ID

NCBI:81489

Aliases

0610007I11Rik
DjB1, Dnajb1, ENSMUSG00000005483
Hdj1, Hsp40, HSPF1
MGI:1931874, NCBI:81489, OFF:Dnajb1

Chromosome

8

Transcripts

41 ORFs
2 known transcripts
77 ORF to known transcript associations

MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

ORFs

Display all the transcripts related to the entry.

240400 ENSMUST00000212300 Dnajb1-202 protein_coding
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

79562 147

ATG ...

MSL ...

Ribo-seq
ATG

weak

3 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC, R1E, v6-5
609060 213

GTG ...

VVA ...

Ribo-seq
GTG

strong

1 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
v6-5
78508 30

GTG ...

VET ...

Ribo-seq
GTG

strong

6 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC, E14, Liver,
MEF, R1E, v6-5
79474 117

CTG ...

LLY ...

Ribo-seq
CTG

weak

4 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC, Brain, R1E,
v6-5
244804 36

TTG ...

LKR ...

Ribo-seq
TTG

weak

6 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell, E14, MEF,
R1E, Spleen_B_cell
243656 99

TTG ...

LIP ...

Ribo-seq
TTG

weak

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, R1E, v6-5
237546 186

GTG ...

VVL ...

Ribo-seq
GTG

strong

2 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
R1E, v6-5
245191 183

GTG ...

VLM ...

Ribo-seq
GTG

moderate

2 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
R1E, v6-5
239399 129

CTG ...

LWL ...

Ribo-seq
CTG

weak

4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, MEF, R1E,
v6-5
5062 39

CTG ...

LME ...

Ribo-seq
CTG

moderate

7 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell, BMDC, E14,
MEF, R1E, v6-5
428845 114

TTG ...

LDV ...

Ribo-seq
TTG

strong

4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell, E14, R1E,
Spleen_B_cell
429825 42

CTG ...

LMS ...

Ribo-seq
CTG

6 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, Brain, E14,
R1E, Spleen_B_cell, v6-5
243249 189

GTG ...

VVV ...

Ribo-seq
GTG

strong

2 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
R1E, v6-5
236224 126

CTG ...

LER ...

Ribo-seq
CTG

strong

9 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell, Brain, E14,
MEF, NSC, R1E,
Spleen_B_cell, v6-5
79999 102

ATG ...

MSS ...

Ribo-seq
ATG

moderate

5 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC, Brain, E14,
R1E, v6-5
81596 36

ATG ...

MER ...

Ribo-seq
ATG

moderate

7 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell, BMDC, E14,
MEF, R1E, v6-5
80772 114

TTG ...

LYS ...

Ribo-seq
TTG

weak

4 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC, Brain, R1E,
v6-5
432421 57

ATG ...

MSS ...

Ribo-seq
ATG

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
R1E, Spleen_B_cell, v6-5
78969 48

ATG ...

MVL ...

Ribo-seq
ATG

5 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, E14, R1E,
Spleen_B_cell, v6-5
248973 114

GTG ...

VAE ...

Ribo-seq
GTG

moderate

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
R1E, v6-5
241574 177

ATG ...

MVP ...

Ribo-seq
ATG

moderate

2 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
R1E, v6-5
240347 138

ATG ...

MPC ...

Ribo-seq
ATG

weak

2 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
R1E, v6-5
78494 39

CTG ...

LRN ...

Ribo-seq
CTG

weak

7 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC, E14, Liver,
MEF, R1E, Spleen_B_cell,
v6-5
243784 201

GTG ...

VEE ...

Ribo-seq
GTG

moderate

1 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
v6-5
242647 87

TTG ...

LGS ...

Ribo-seq
TTG

moderate

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, R1E, v6-5
238607 51

ATG ...

MTH ...

Ribo-seq
ATG

weak

5 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, MEF, R1E,
v6-5
603622 39

ATG ...

MSS ...

Ribo-seq
ATG

4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, E14, R1E,
v6-5
919496 117

AGG ...

RDQ ...

Ribo-seq
AGG

strong

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
243571 90

CTG ...

LVC ...

Ribo-seq
CTG

strong

4 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC, Brain, E14,
R1E
432755 60

CTG ...

LMS ...

Ribo-seq
CTG

4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, R1E, Spleen_B_cell,
v6-5
244330 123

TTG ...

LHC ...

Ribo-seq
TTG

weak

4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, MEF, R1E,
v6-5
240231 54

ATG ...

MTF ...

Ribo-seq
ATG

weak

5 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell, E14, MEF,
R1E, Spleen_B_cell
245319 126

CTG ...

LSS ...

Ribo-seq
CTG

weak

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
R1E, v6-5
78730 69

CTG ...

LEK ...

Ribo-seq
CTG

moderate

3 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC, E14, Spleen_B_cell
432698 66

ATG ...

MVL ...

Ribo-seq
ATG

4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, R1E, Spleen_B_cell,
v6-5
249722 54

TTG ...

LMT ...

Ribo-seq
TTG

moderate

5 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, MEF, R1E,
v6-5
5713 45

CTG ...

LYQ ...

Ribo-seq
CTG

weak

9 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell, Brain, E14,
MEF, NSC, R1E,
v6-5
237717 129

TTG ...

LLS ...

Ribo-seq
TTG

weak

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, R1E, v6-5
5063 ENSMUST00000005620 Dnajb1-201 protein_coding
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

80772 114

TTG ...

LYS ...

Ribo-seq
TTG

weak

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Testis
920238 174

ACG ...

TGQ ...

Ribo-seq
ACG

strong

2 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
BMDC, E14
243784 201

GTG ...

VEE ...

Ribo-seq
GTG

moderate

2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, Brain
428845 114

TTG ...

LDV ...

Ribo-seq
TTG

strong

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3
236224 126

CTG ...

LER ...

Ribo-seq
CTG

strong

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Brain
78508 30

GTG ...

VET ...

Ribo-seq
GTG

strong

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, E14, Testis
81596 36

ATG ...

MER ...

Ribo-seq
ATG

moderate

4 sORFs_org_Mouse
Johnstone2016
    InCDS
    Overlapping
    sORF
3T3, Brain, Glioma,
Liver, MEF, MESC,
Testis
5062 39

CTG ...

LME ...

Ribo-seq
CTG

moderate

5 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, Brain, E14,
Skin_tumor, Testis
248229 141

CTG ...

LGG ...

Ribo-seq
CTG

moderate

4 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
3T3, B_cell, Brain,
Spleen_B_cell
5713 45

CTG ...

LYQ ...

Ribo-seq
CTG

weak

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Brain, Skin_tumor
249722 54

TTG ...

LMT ...

Ribo-seq
TTG

moderate

2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, Brain
79999 102

ATG ...

MSS ...

Ribo-seq
ATG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Testis
78494 39

CTG ...

LRN ...

Ribo-seq
CTG

weak

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, Testis
245191 183

GTG ...

VLM ...

Ribo-seq
GTG

moderate

2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, Brain
78730 69

CTG ...

LEK ...

Ribo-seq
CTG

moderate

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, Testis
432421 57

ATG ...

MSS ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3
239399 129

CTG ...

LWL ...

Ribo-seq
CTG

weak

2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, Brain
432755 60

CTG ...

LMS ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3
609060 213

GTG ...

VVA ...

Ribo-seq
GTG

strong

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3
243656 99

TTG ...

LIP ...

Ribo-seq
TTG

weak

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain
240231 54

ATG ...

MTF ...

Ribo-seq
ATG

weak

4 sORFs_org_Mouse
Johnstone2016
    InCDS
    Overlapping
    sORF
3T3, Brain, Glioma,
Liver, MEF, MESC
237546 186

GTG ...

VVL ...

Ribo-seq
GTG

strong

2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, Brain
242647 87

TTG ...

LGS ...

Ribo-seq
TTG

moderate

2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain, E14
603622 39

ATG ...

MSS ...

Ribo-seq
ATG

2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, E14
248973 114

GTG ...

VAE ...

Ribo-seq
GTG

moderate

2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, Brain
244804 36

TTG ...

LKR ...

Ribo-seq
TTG

weak

2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, Brain
755508 258

GTG ...

VRR ...

Ribo-seq
GTG

moderate

1 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
B_cell
245319 126

CTG ...

LSS ...

Ribo-seq
CTG

weak

2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, Brain
244330 123

TTG ...

LHC ...

Ribo-seq
TTG

weak

3 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, Brain, E14
432698 66

ATG ...

MVL ...

Ribo-seq
ATG

3 sORFs_org_Mouse
Johnstone2016
    InCDS
    Overlapping
    sORF
3T3, E14, Glioma,
Liver, MEF, MESC
243249 189

GTG ...

VVV ...

Ribo-seq
GTG

strong

2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, Brain
79562 147

ATG ...

MSL ...

Ribo-seq
ATG

weak

4 sORFs_org_Mouse
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Brain, Glioma,
Liver, MEF, MESC,
Testis
78969 48

ATG ...

MVL ...

Ribo-seq
ATG

3 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, E14, Testis
429825 42

CTG ...

LMS ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3
238607 51

ATG ...

MTH ...

Ribo-seq
ATG

weak

2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, Brain
241574 177

ATG ...

MVP ...

Ribo-seq
ATG

moderate

4 sORFs_org_Mouse
Johnstone2016
    InCDS
    Overlapping
    sORF
3T3, Brain, E14,
Glioma, Liver, MEF,
MESC
240347 138

ATG ...

MPC ...

Ribo-seq
ATG

weak

2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, Brain
237717 129

TTG ...

LLS ...

Ribo-seq
TTG

weak

2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, Brain
79474 117

CTG ...

LLY ...

Ribo-seq
CTG

weak

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Testis
3131000 UNKNOWN_TRANSCRIPT
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

79562 147

ATG ...

MSL ...

Predicted
ATG

1 Samandi2017
    sORF
241574 177

ATG ...

MVP ...

Predicted
ATG

1 Samandi2017
    sORF

ORFs

41 ORFs
2 known transcripts
77 ORF to known transcript associations

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF Length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Start codon

The start codon sequence of the ORF.

ORF annotations

A comma-separated list of all the annotations computed by our algorithm for the ORF. This list includes the annotations computed for the ORF for all transcripts. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of all the cell types in which the ORF has already been identified.

Transcripts

Display all the transcripts related to the entry.

79562 147

ATG...

MSL...

ATG InCDS
Overlapping
sORF
Alternative
BMDC, R1E, v6-5,
3T3, Brain,
Glioma, Liver, MEF,
MESC, Testis
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

240400 ENSMUST00000212300 Dnajb1-202 protein_coding Ribo-seq
weak 3 sORFs_org_Mouse
3131000 UNKNOWN_TRANSCRIPT Predicted
1 Samandi2017
5063 ENSMUST00000005620 Dnajb1-201 protein_coding Ribo-seq
weak 4 sORFs_org_Mouse
Johnstone2016
80772 114

TTG...

LYS...

TTG Alternative
InCDS
Overlapping
sORF
Testis, BMDC, Brain,
R1E, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

5063 ENSMUST00000005620 Dnajb1-201 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
240400 ENSMUST00000212300 Dnajb1-202 protein_coding Ribo-seq
weak 4 sORFs_org_Mouse
920238 174

ACG...

TGQ...

ACG Alternative
Overlapping
sORF
Upstream
BMDC, E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

5063 ENSMUST00000005620 Dnajb1-201 protein_coding Ribo-seq
strong 2 sORFs_org_Mouse
243784 201

GTG...

VEE...

GTG InCDS
Overlapping
sORF
Alternative
Upstream
3T3, Brain, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

5063 ENSMUST00000005620 Dnajb1-201 protein_coding Ribo-seq
moderate 2 sORFs_org_Mouse
240400 ENSMUST00000212300 Dnajb1-202 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
428845 114

TTG...

LDV...

TTG InCDS
Overlapping
sORF
Alternative
3T3, B_cell, E14,
R1E, Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

5063 ENSMUST00000005620 Dnajb1-201 protein_coding Ribo-seq
strong 1 sORFs_org_Mouse
240400 ENSMUST00000212300 Dnajb1-202 protein_coding Ribo-seq
strong 4 sORFs_org_Mouse
609060 213

GTG...

VVA...

GTG Alternative
Overlapping
sORF
Upstream
InCDS
v6-5, 3T3
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

240400 ENSMUST00000212300 Dnajb1-202 protein_coding Ribo-seq
strong 1 sORFs_org_Mouse
5063 ENSMUST00000005620 Dnajb1-201 protein_coding Ribo-seq
strong 1 sORFs_org_Mouse
236224 126

CTG...

LER...

CTG Alternative
InCDS
Overlapping
sORF
3T3, Brain, B_cell,
E14, MEF, NSC,
R1E, Spleen_B_cell, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

5063 ENSMUST00000005620 Dnajb1-201 protein_coding Ribo-seq
strong 2 sORFs_org_Mouse
240400 ENSMUST00000212300 Dnajb1-202 protein_coding Ribo-seq
strong 9 sORFs_org_Mouse
78508 30

GTG...

VET...

GTG Alternative
InCDS
Overlapping
sORF
Brain, E14, Testis,
BMDC, Liver, MEF,
R1E, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

5063 ENSMUST00000005620 Dnajb1-201 protein_coding Ribo-seq
strong 3 sORFs_org_Mouse
240400 ENSMUST00000212300 Dnajb1-202 protein_coding Ribo-seq
strong 6 sORFs_org_Mouse
81596 36

ATG...

MER...

ATG InCDS
Overlapping
sORF
Alternative
3T3, Brain, Glioma,
Liver, MEF, MESC,
Testis, B_cell, BMDC,
E14, R1E, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

5063 ENSMUST00000005620 Dnajb1-201 protein_coding Ribo-seq
moderate 4 sORFs_org_Mouse
Johnstone2016
240400 ENSMUST00000212300 Dnajb1-202 protein_coding Ribo-seq
moderate 7 sORFs_org_Mouse
79474 117

CTG...

LLY...

CTG InCDS
Overlapping
sORF
Alternative
BMDC, Brain, R1E,
v6-5, Testis
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

240400 ENSMUST00000212300 Dnajb1-202 protein_coding Ribo-seq
weak 4 sORFs_org_Mouse
5063 ENSMUST00000005620 Dnajb1-201 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
5062 39

CTG...

LME...

CTG InCDS
Overlapping
sORF
Alternative
3T3, Brain, E14,
Skin_tumor, Testis, B_cell,
BMDC, MEF, R1E,
v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

5063 ENSMUST00000005620 Dnajb1-201 protein_coding Ribo-seq
moderate 5 sORFs_org_Mouse
240400 ENSMUST00000212300 Dnajb1-202 protein_coding Ribo-seq
moderate 7 sORFs_org_Mouse
248229 141

CTG...

LGG...

CTG Alternative
Overlapping
sORF
Upstream
3T3, B_cell, Brain,
Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

5063 ENSMUST00000005620 Dnajb1-201 protein_coding Ribo-seq
moderate 4 sORFs_org_Mouse
244804 36

TTG...

LKR...

TTG Alternative
InCDS
Overlapping
sORF
B_cell, E14, MEF,
R1E, Spleen_B_cell, 3T3,
Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

240400 ENSMUST00000212300 Dnajb1-202 protein_coding Ribo-seq
weak 6 sORFs_org_Mouse
5063 ENSMUST00000005620 Dnajb1-201 protein_coding Ribo-seq
weak 2 sORFs_org_Mouse
243656 99

TTG...

LIP...

TTG Alternative
InCDS
Overlapping
sORF
Brain, R1E, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

240400 ENSMUST00000212300 Dnajb1-202 protein_coding Ribo-seq
weak 3 sORFs_org_Mouse
5063 ENSMUST00000005620 Dnajb1-201 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
5713 45

CTG...

LYQ...

CTG Alternative
InCDS
Overlapping
sORF
3T3, Brain, Skin_tumor,
B_cell, E14, MEF,
NSC, R1E, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

5063 ENSMUST00000005620 Dnajb1-201 protein_coding Ribo-seq
weak 3 sORFs_org_Mouse
240400 ENSMUST00000212300 Dnajb1-202 protein_coding Ribo-seq
weak 9 sORFs_org_Mouse
237546 186

GTG...

VVL...

GTG Alternative
Overlapping
sORF
Upstream
InCDS
R1E, v6-5, 3T3,
Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

240400 ENSMUST00000212300 Dnajb1-202 protein_coding Ribo-seq
strong 2 sORFs_org_Mouse
5063 ENSMUST00000005620 Dnajb1-201 protein_coding Ribo-seq
strong 2 sORFs_org_Mouse
249722 54

TTG...

LMT...

TTG InCDS
Overlapping
sORF
Alternative
3T3, Brain, MEF,
R1E, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

5063 ENSMUST00000005620 Dnajb1-201 protein_coding Ribo-seq
moderate 2 sORFs_org_Mouse
240400 ENSMUST00000212300 Dnajb1-202 protein_coding Ribo-seq
moderate 5 sORFs_org_Mouse
245191 183

GTG...

VLM...

GTG Alternative
Overlapping
sORF
Upstream
InCDS
R1E, v6-5, 3T3,
Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

240400 ENSMUST00000212300 Dnajb1-202 protein_coding Ribo-seq
moderate 2 sORFs_org_Mouse
5063 ENSMUST00000005620 Dnajb1-201 protein_coding Ribo-seq
moderate 2 sORFs_org_Mouse
79999 102

ATG...

MSS...

ATG Alternative
InCDS
Overlapping
sORF
Testis, BMDC, Brain,
E14, R1E, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

5063 ENSMUST00000005620 Dnajb1-201 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
240400 ENSMUST00000212300 Dnajb1-202 protein_coding Ribo-seq
moderate 5 sORFs_org_Mouse
239399 129

CTG...

LWL...

CTG Alternative
InCDS
Overlapping
sORF
E14, MEF, R1E,
v6-5, 3T3, Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

240400 ENSMUST00000212300 Dnajb1-202 protein_coding Ribo-seq
weak 4 sORFs_org_Mouse
5063 ENSMUST00000005620 Dnajb1-201 protein_coding Ribo-seq
weak 2 sORFs_org_Mouse
78494 39

CTG...

LRN...

CTG Alternative
InCDS
Overlapping
sORF
Brain, Testis, BMDC,
E14, Liver, MEF,
R1E, Spleen_B_cell, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

5063 ENSMUST00000005620 Dnajb1-201 protein_coding Ribo-seq
weak 2 sORFs_org_Mouse
240400 ENSMUST00000212300 Dnajb1-202 protein_coding Ribo-seq
weak 7 sORFs_org_Mouse
78730 69

CTG...

LEK...

CTG Alternative
InCDS
Overlapping
sORF
Brain, Testis, BMDC,
E14, Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

5063 ENSMUST00000005620 Dnajb1-201 protein_coding Ribo-seq
moderate 2 sORFs_org_Mouse
240400 ENSMUST00000212300 Dnajb1-202 protein_coding Ribo-seq
moderate 3 sORFs_org_Mouse
429825 42

CTG...

LMS...

CTG Alternative
InCDS
Overlapping
sORF
BMDC, Brain, E14,
R1E, Spleen_B_cell, v6-5,
3T3
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

240400 ENSMUST00000212300 Dnajb1-202 protein_coding Ribo-seq
6 sORFs_org_Mouse
5063 ENSMUST00000005620 Dnajb1-201 protein_coding Ribo-seq
1 sORFs_org_Mouse
243249 189

GTG...

VVV...

GTG Alternative
Overlapping
sORF
Upstream
InCDS
R1E, v6-5, 3T3,
Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

240400 ENSMUST00000212300 Dnajb1-202 protein_coding Ribo-seq
strong 2 sORFs_org_Mouse
5063 ENSMUST00000005620 Dnajb1-201 protein_coding Ribo-seq
strong 2 sORFs_org_Mouse
432421 57

ATG...

MSS...

ATG InCDS
Overlapping
sORF
Alternative
3T3, R1E, Spleen_B_cell,
v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

5063 ENSMUST00000005620 Dnajb1-201 protein_coding Ribo-seq
1 sORFs_org_Mouse
240400 ENSMUST00000212300 Dnajb1-202 protein_coding Ribo-seq
3 sORFs_org_Mouse
432755 60

CTG...

LMS...

CTG InCDS
Overlapping
sORF
Alternative
3T3, BMDC, R1E,
Spleen_B_cell, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

5063 ENSMUST00000005620 Dnajb1-201 protein_coding Ribo-seq
1 sORFs_org_Mouse
240400 ENSMUST00000212300 Dnajb1-202 protein_coding Ribo-seq
4 sORFs_org_Mouse
78969 48

ATG...

MVL...

ATG Alternative
InCDS
Overlapping
sORF
Brain, E14, R1E,
Spleen_B_cell, v6-5, 3T3,
Testis
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

240400 ENSMUST00000212300 Dnajb1-202 protein_coding Ribo-seq
5 sORFs_org_Mouse
5063 ENSMUST00000005620 Dnajb1-201 protein_coding Ribo-seq
3 sORFs_org_Mouse
248973 114

GTG...

VAE...

GTG Alternative
InCDS
Overlapping
sORF
R1E, v6-5, 3T3,
Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

240400 ENSMUST00000212300 Dnajb1-202 protein_coding Ribo-seq
moderate 2 sORFs_org_Mouse
5063 ENSMUST00000005620 Dnajb1-201 protein_coding Ribo-seq
moderate 2 sORFs_org_Mouse
240231 54

ATG...

MTF...

ATG InCDS
Overlapping
sORF
Alternative
3T3, Brain, Glioma,
Liver, MEF, MESC,
B_cell, E14, R1E,
Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

5063 ENSMUST00000005620 Dnajb1-201 protein_coding Ribo-seq
weak 4 sORFs_org_Mouse
Johnstone2016
240400 ENSMUST00000212300 Dnajb1-202 protein_coding Ribo-seq
weak 5 sORFs_org_Mouse
241574 177

ATG...

MVP...

ATG Alternative
Overlapping
sORF
Upstream
InCDS
R1E, v6-5,
3T3, Brain, E14,
Glioma, Liver, MEF,
MESC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

240400 ENSMUST00000212300 Dnajb1-202 protein_coding Ribo-seq
moderate 2 sORFs_org_Mouse
3131000 UNKNOWN_TRANSCRIPT Predicted
1 Samandi2017
5063 ENSMUST00000005620 Dnajb1-201 protein_coding Ribo-seq
moderate 4 sORFs_org_Mouse
Johnstone2016
242647 87

TTG...

LGS...

TTG InCDS
Overlapping
sORF
Alternative
Brain, E14, MEF,
R1E, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

5063 ENSMUST00000005620 Dnajb1-201 protein_coding Ribo-seq
moderate 2 sORFs_org_Mouse
240400 ENSMUST00000212300 Dnajb1-202 protein_coding Ribo-seq
moderate 3 sORFs_org_Mouse
603622 39

ATG...

MSS...

ATG InCDS
Overlapping
sORF
Alternative
3T3, E14, Brain,
R1E, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

5063 ENSMUST00000005620 Dnajb1-201 protein_coding Ribo-seq
2 sORFs_org_Mouse
240400 ENSMUST00000212300 Dnajb1-202 protein_coding Ribo-seq
4 sORFs_org_Mouse
240347 138

ATG...

MPC...

ATG Alternative
Overlapping
sORF
Upstream
InCDS
R1E, v6-5, 3T3,
Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

240400 ENSMUST00000212300 Dnajb1-202 protein_coding Ribo-seq
weak 2 sORFs_org_Mouse
5063 ENSMUST00000005620 Dnajb1-201 protein_coding Ribo-seq
weak 2 sORFs_org_Mouse
755508 258

GTG...

VRR...

GTG Alternative
Overlapping
sORF
Upstream
B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

5063 ENSMUST00000005620 Dnajb1-201 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
245319 126

CTG...

LSS...

CTG InCDS
Overlapping
sORF
Alternative
3T3, Brain, R1E,
v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

5063 ENSMUST00000005620 Dnajb1-201 protein_coding Ribo-seq
weak 2 sORFs_org_Mouse
240400 ENSMUST00000212300 Dnajb1-202 protein_coding Ribo-seq
weak 2 sORFs_org_Mouse
244330 123

TTG...

LHC...

TTG InCDS
Overlapping
sORF
Alternative
3T3, Brain, E14,
MEF, R1E, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

5063 ENSMUST00000005620 Dnajb1-201 protein_coding Ribo-seq
weak 3 sORFs_org_Mouse
240400 ENSMUST00000212300 Dnajb1-202 protein_coding Ribo-seq
weak 4 sORFs_org_Mouse
432698 66

ATG...

MVL...

ATG InCDS
Overlapping
sORF
Alternative
3T3, E14, Glioma,
Liver, MEF, MESC,
Brain, R1E, Spleen_B_cell,
v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

5063 ENSMUST00000005620 Dnajb1-201 protein_coding Ribo-seq
3 sORFs_org_Mouse
Johnstone2016
240400 ENSMUST00000212300 Dnajb1-202 protein_coding Ribo-seq
4 sORFs_org_Mouse
238607 51

ATG...

MTH...

ATG Alternative
InCDS
Overlapping
sORF
Brain, MEF, R1E,
v6-5, 3T3
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

240400 ENSMUST00000212300 Dnajb1-202 protein_coding Ribo-seq
weak 5 sORFs_org_Mouse
5063 ENSMUST00000005620 Dnajb1-201 protein_coding Ribo-seq
weak 2 sORFs_org_Mouse
919496 117

AGG...

RDQ...

AGG Alternative
InCDS
Overlapping
sORF
BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

240400 ENSMUST00000212300 Dnajb1-202 protein_coding Ribo-seq
strong 1 sORFs_org_Mouse
243571 90

CTG...

LVC...

CTG InCDS
Overlapping
sORF
BMDC, Brain, E14,
R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

240400 ENSMUST00000212300 Dnajb1-202 protein_coding Ribo-seq
strong 4 sORFs_org_Mouse
237717 129

TTG...

LLS...

TTG InCDS
Overlapping
sORF
Alternative
3T3, Brain, MEF,
R1E, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

5063 ENSMUST00000005620 Dnajb1-201 protein_coding Ribo-seq
weak 2 sORFs_org_Mouse
240400 ENSMUST00000212300 Dnajb1-202 protein_coding Ribo-seq
weak 3 sORFs_org_Mouse

Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5