Gene NCBI:73824 | MetamORF

Gene

ID CARD

NCBI:73824

Aliases

1110008H02Rik
ENSMUSG00000098234, MGI:1921074, NCBI:73824
OFF:Snhg6, Snhg6

Chromosome

Transcripts

6 ORFs
5 known transcripts
22 ORF to known transcript associations

MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

ORFs

Display all the transcripts related to the entry.

337601

ENSMUST00000182580

Snhg6-203

lincRNA

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
191263	78	GTG ...	VLE ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Intergenic ncRNA sORF	R1E
337600	84	TTG ...	LKV ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	Intergenic ncRNA sORF	Brain, R1E
9437	39	GTG ...	VIE ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	Intergenic ncRNA sORF	Brain, MEF, R1E
329652	51	TTG ...	LSW ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	Intergenic ncRNA sORF	MEF, R1E

1038924

ENSMUST00000182819

Snhg6-205

lincRNA

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
363732	39	TTG ...	LNK ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Intergenic ncRNA sORF	NSC
337600	84	TTG ...	LKV ...	Ribo-seq	TTG	weak	3	sORFs_org_Mouse	Intergenic ncRNA sORF	MEF, Neutrophil, NSC
191263	78	GTG ...	VLE ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	Intergenic ncRNA sORF	MEF, Neutrophil, NSC
9437	39	GTG ...	VIE ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Intergenic ncRNA sORF	NSC
1602278	36	GTG ...	VAV ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Intergenic ncRNA sORF	MEF
329652	51	TTG ...	LSW ...	Ribo-seq	TTG	weak	3	sORFs_org_Mouse	Intergenic ncRNA sORF	MEF, Neutrophil, NSC

458690

ENSMUST00000182043

Snhg6-201

lincRNA

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
337600	84	TTG ...	LKV ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	Intergenic ncRNA sORF	Spleen_B_cell, v6-5
191263	78	GTG ...	VLE ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Intergenic ncRNA sORF	v6-5
9437	39	GTG ...	VIE ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Intergenic ncRNA sORF	v6-5
329652	51	TTG ...	LSW ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	Intergenic ncRNA sORF	Spleen_B_cell, v6-5
363732	39	TTG ...	LNK ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Intergenic ncRNA sORF	v6-5

191264

ENSMUST00000182498

Snhg6-202

lincRNA

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
191263	78	GTG ...	VLE ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Intergenic ncRNA sORF	Brain, Spleen_B_cell
329652	51	TTG ...	LSW ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Intergenic ncRNA sORF	Brain
363732	39	TTG ...	LNK ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Intergenic ncRNA sORF	Brain

9438

ENSMUST00000182742

Snhg6-204

lincRNA

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
337600	84	TTG ...	LKV ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	Intergenic ncRNA sORF	B_cell, Brain
191263	78	GTG ...	VLE ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Intergenic ncRNA sORF	B_cell, Brain
329652	51	TTG ...	LSW ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Intergenic ncRNA sORF	B_cell
9437	39	GTG ...	VIE ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Intergenic ncRNA sORF	B_cell, Skin_tumor

ORFs

6 ORFs
5 known transcripts
22 ORF to known transcript associations

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF Length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Start codon

The start codon sequence of the ORF.

ORF annotations

A comma-separated list of all the annotations computed by our algorithm for the ORF. This list includes the annotations computed for the ORF for all transcripts. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of all the cell types in which the ORF has already been identified.

Transcripts

Display all the transcripts related to the entry.

191263

GTG...

VLE...

GTG

Intergenic
ncRNA
sORF

R1E, Brain, Spleen_B_cell,
v6-5, MEF, Neutrophil,
NSC, B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
337601	ENSMUST00000182580	Snhg6-203	lincRNA	Ribo-seq	moderate	1	sORFs_org_Mouse
191264	ENSMUST00000182498	Snhg6-202	lincRNA	Ribo-seq	moderate	2	sORFs_org_Mouse
458690	ENSMUST00000182043	Snhg6-201	lincRNA	Ribo-seq	moderate	1	sORFs_org_Mouse
1038924	ENSMUST00000182819	Snhg6-205	lincRNA	Ribo-seq	moderate	3	sORFs_org_Mouse
9438	ENSMUST00000182742	Snhg6-204	lincRNA	Ribo-seq	moderate	2	sORFs_org_Mouse

363732

TTG...

LNK...

TTG

Intergenic
ncRNA
sORF

NSC, Brain, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
1038924	ENSMUST00000182819	Snhg6-205	lincRNA	Ribo-seq	weak	1	sORFs_org_Mouse
191264	ENSMUST00000182498	Snhg6-202	lincRNA	Ribo-seq	weak	1	sORFs_org_Mouse
458690	ENSMUST00000182043	Snhg6-201	lincRNA	Ribo-seq	weak	1	sORFs_org_Mouse

337600

TTG...

LKV...

TTG

Intergenic
ncRNA
sORF

MEF, Neutrophil, NSC,
Spleen_B_cell, v6-5, Brain,
R1E, B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
1038924	ENSMUST00000182819	Snhg6-205	lincRNA	Ribo-seq	weak	3	sORFs_org_Mouse
458690	ENSMUST00000182043	Snhg6-201	lincRNA	Ribo-seq	weak	2	sORFs_org_Mouse
337601	ENSMUST00000182580	Snhg6-203	lincRNA	Ribo-seq	weak	2	sORFs_org_Mouse
9438	ENSMUST00000182742	Snhg6-204	lincRNA	Ribo-seq	weak	2	sORFs_org_Mouse

329652

TTG...

LSW...

TTG

Intergenic
ncRNA
sORF

Brain, Spleen_B_cell, v6-5,
B_cell, MEF, R1E,
Neutrophil, NSC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
191264	ENSMUST00000182498	Snhg6-202	lincRNA	Ribo-seq	weak	1	sORFs_org_Mouse
458690	ENSMUST00000182043	Snhg6-201	lincRNA	Ribo-seq	weak	2	sORFs_org_Mouse
9438	ENSMUST00000182742	Snhg6-204	lincRNA	Ribo-seq	weak	1	sORFs_org_Mouse
337601	ENSMUST00000182580	Snhg6-203	lincRNA	Ribo-seq	weak	2	sORFs_org_Mouse
1038924	ENSMUST00000182819	Snhg6-205	lincRNA	Ribo-seq	weak	3	sORFs_org_Mouse

9437

GTG...

VIE...

GTG

Intergenic
ncRNA
sORF

Brain, MEF, R1E,
v6-5, B_cell, Skin_tumor,
NSC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
337601	ENSMUST00000182580	Snhg6-203	lincRNA	Ribo-seq	moderate	3	sORFs_org_Mouse
458690	ENSMUST00000182043	Snhg6-201	lincRNA	Ribo-seq	moderate	1	sORFs_org_Mouse
9438	ENSMUST00000182742	Snhg6-204	lincRNA	Ribo-seq	moderate	2	sORFs_org_Mouse
1038924	ENSMUST00000182819	Snhg6-205	lincRNA	Ribo-seq	moderate	1	sORFs_org_Mouse

1602278

GTG...

VAV...

GTG

Intergenic
ncRNA
sORF

MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
1038924	ENSMUST00000182819	Snhg6-205	lincRNA	Ribo-seq	moderate	2	sORFs_org_Mouse

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