Metam
ORF

Logo

Gene

Gene

ID CARD

ID

NCBI:72674

Aliases

2810031L11Rik
ACDCR1, Adipor1, CGI-45
ENSMUSG00000026457, MGI:1919924, NCBI:72674
OFF:Adipor1, Paqr1

Chromosome

1

Transcripts

92 ORFs
3 known transcripts
140 ORF to known transcript associations

MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

ORFs

Display all the transcripts related to the entry.

20943 ENSMUST00000148822 Adipor1-203 retained_intron
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

398321 33

CTG ...

LGG ...

Ribo-seq
CTG

strong

1 sORFs_org_Mouse
    Intronic
    sORF
Brain
341915 216

CTG ...

LPS ...

Ribo-seq
CTG

3 sORFs_org_Mouse
    Intronic
    sORF
3T3, Brain, Spleen_B_cell
288699 81

CTG ...

LPQ ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    Intronic
    sORF
Brain
724258 30

CTG ...

LRD ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    Intronic
    sORF
3T3
300560 45

CTG ...

LSF ...

Ribo-seq
CTG

weak

2 sORFs_org_Mouse
    Intronic
    sORF
Brain, MEF
74492 60

CTG ...

LRK ...

Ribo-seq
CTG

moderate

5 sORFs_org_Mouse
    Intronic
    sORF
3T3, B_cell, Brain,
Spleen_B_cell, Testis
345243 66

CTG ...

LTL ...

Ribo-seq
CTG

moderate

2 sORFs_org_Mouse
    Intronic
    sORF
3T3, Brain
400869 90

ATG ...

MSR ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    Intronic
    sORF
Brain
22962 90

GTG ...

VRE ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    Intronic
    sORF
Testis
400193 99

ATG ...

MPG ...

Ribo-seq
ATG

moderate

2 sORFs_org_Mouse
    Intronic
    sORF
3T3, Brain
369992 66

TTG ...

LLQ ...

Ribo-seq
TTG

2 sORFs_org_Mouse
    Intronic
    sORF
3T3, Brain
294742 126

CTG ...

LPG ...

Ribo-seq
CTG

3 sORFs_org_Mouse
    Intronic
    sORF
3T3, Brain, Spleen_B_cell
401562 78

TTG ...

LLC ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    Intronic
    sORF
Brain
293353 69

GTG ...

VLT ...

Ribo-seq
GTG

weak

2 sORFs_org_Mouse
    Intronic
    sORF
3T3, Brain
51620 126

CTG ...

LLA ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    Intronic
    sORF
3T3, Testis
364102 66

CTG ...

LAL ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    Intronic
    sORF
Brain
73601 123

CTG ...

LQE ...

Ribo-seq
CTG

weak

4 sORFs_org_Mouse
    Intronic
    sORF
3T3, Brain, Testis
63359 81

GTG ...

VLC ...

Ribo-seq
GTG

moderate

4 sORFs_org_Mouse
    Intronic
    sORF
3T3, Brain, Testis
387515 30

TTG ...

LCY ...

Ribo-seq
TTG

moderate

1 sORFs_org_Mouse
    Intronic
    sORF
Brain
39478 90

CTG ...

LGA ...

Ribo-seq
CTG

moderate

5 sORFs_org_Mouse
    Intronic
    sORF
3T3, Brain, MEF,
Testis
24911 129

CTG ...

LKD ...

Ribo-seq
CTG

5 sORFs_org_Mouse
    Intronic
    sORF
3T3, Brain, MEF,
Testis
298773 81

CTG ...

LTQ ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    Intronic
    sORF
3T3, Brain
726347 36

CTG ...

LGL ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    Intronic
    sORF
3T3
337490 171

CTG ...

LPG ...

Ribo-seq
CTG

5 sORFs_org_Mouse
    Intronic
    sORF
3T3, Brain, E14,
Spleen_B_cell
405564 108

ATG ...

MGL ...

Ribo-seq
ATG

3 sORFs_org_Mouse
    Intronic
    sORF
3T3, Brain, Spleen_B_cell
30651 111

GTG ...

VVF ...

Ribo-seq
GTG

strong

4 sORFs_org_Mouse
    Intronic
    sORF
3T3, Brain, Testis
41112 144

GTG ...

VLP ...

Ribo-seq
GTG

5 sORFs_org_Mouse
    Intronic
    sORF
3T3, Brain, MEF,
Testis
307877 129

CTG ...

LAE ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    Intronic
    sORF
3T3, Brain
349967 75

GTG ...

VRV ...

Ribo-seq
GTG

moderate

2 sORFs_org_Mouse
    Intronic
    sORF
3T3, Brain
355981 81

CTG ...

LLL ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Intronic
    sORF
Brain
20942 162

TTG ...

LTM ...

Ribo-seq
TTG

moderate

5 sORFs_org_Mouse
    Intronic
    sORF
3T3, Brain, MEF,
Testis
102950 177

CTG ...

LKL ...

Ribo-seq
CTG

4 sORFs_org_Mouse
    Intronic
    sORF
3T3, Brain, Spleen_B_cell
690550 72

CTG ...

LQC ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Intronic
    sORF
3T3
28621 69

GTG ...

VAG ...

Ribo-seq
GTG

3 sORFs_org_Mouse
    Intronic
    sORF
3T3, Brain, Testis
298178 72

CTG ...

LRY ...

Ribo-seq
CTG

moderate

4 sORFs_org_Mouse
    Intronic
    sORF
3T3, Brain, MEF,
Spleen_B_cell
393711 240

GTG ...

VST ...

Ribo-seq
GTG

3 sORFs_org_Mouse
    Intronic
    sORF
3T3, Brain, Spleen_B_cell
37788 111

CTG ...

LLH ...

Ribo-seq
CTG

4 sORFs_org_Mouse
    Intronic
    sORF
3T3, Brain, Testis
371532 255

ATG ...

MFV ...

Ribo-seq
ATG

3 sORFs_org_Mouse
    Intronic
    sORF
3T3, Brain, E14
369393 54

CTG ...

LQA ...

Ribo-seq
CTG

weak

2 sORFs_org_Mouse
    Intronic
    sORF
3T3, Brain
55191 123

CTG ...

LAT ...

Ribo-seq
CTG

3 sORFs_org_Mouse
    Intronic
    sORF
3T3, Brain, Testis
240011 63

CTG ...

LSW ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    Intronic
    sORF
3T3, Brain
310148 96

CTG ...

LVT ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    Intronic
    sORF
3T3, Brain
35241 171

CTG ...

LGI ...

Ribo-seq
CTG

moderate

5 sORFs_org_Mouse
    Intronic
    sORF
3T3, Brain, MEF,
Testis
358052 99

GTG ...

VPQ ...

Ribo-seq
GTG

weak

2 sORFs_org_Mouse
    Intronic
    sORF
3T3, Brain
370821 75

TTG ...

LCS ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    Intronic
    sORF
Brain
90333 153

CTG ...

LRP ...

Ribo-seq
CTG

moderate

5 sORFs_org_Mouse
    Intronic
    sORF
3T3, Brain, MEF,
Testis
32487 186

GTG ...

VLF ...

Ribo-seq
GTG

weak

5 sORFs_org_Mouse
    Intronic
    sORF
3T3, Brain, MEF,
Testis
108941 ENSMUST00000112237 Adipor1-202 protein_coding
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

1227515 93

AGG ...

RAS ...

Ribo-seq
AGG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
349762 96

GTG ...

VVL ...

Ribo-seq
GTG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain
344214 51

CTG ...

LLG ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain
120307 105

GTG ...

VGP ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain
1294026 33

AGG ...

RSN ...

Ribo-seq
AGG

weak

1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
E14
114151 132

CTG ...

LSA ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain
405564 108

ATG ...

MGL ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
342762 144

CTG ...

LAL ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain
1309383 39

ATC ...

IRR ...

Ribo-seq
ATC

moderate

1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
E14
114304 201

CTG ...

LAL ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain
943198 231

ATC ...

ITG ...

Ribo-seq
ATC

1 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
E14
1287239 36

AGG ...

RAS ...

Ribo-seq
AGG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
405662 93

GTG ...

VLY ...

Ribo-seq
GTG

moderate

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, E14
310148 96

CTG ...

LVT ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
396251 36

GTG ...

VCP ...

Ribo-seq
GTG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain
326983 84

CTG ...

LCP ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain
387130 39

ATG ...

MVC ...

Ribo-seq
ATG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain
130013 141

CTG ...

LCP ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain
1213532 87

CTG ...

LDR ...

Ribo-seq
CTG

3 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
E14, MEF
102950 177

CTG ...

LKL ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
E14
342911 39

CTG ...

LSA ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain
124422 165

ATG ...

MGL ...

Ribo-seq
ATG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, E14
112774 138

CTG ...

LTQ ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain
298178 72

CTG ...

LRY ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
E14
331064 39

CTG ...

LYR ...

Ribo-seq
CTG

weak

1 sORFs_org_Mouse
    Downstream
    Overlapping
    sORF
Brain
121816 120

CTG ...

LSW ...

Ribo-seq
CTG

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Brain, E14
55191 123

CTG ...

LAT ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
E14
312131 54

ATG ...

MLL ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain
151565 180

CTG ...

LLP ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain
1271744 69

CTG ...

LDR ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
E14
135977 153

CTG ...

LVT ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, E14
308446 123

CTG ...

LLP ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain
108940 183

CTG ...

LPG ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain
132945 147

ATG ...

MLL ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain
38010 48

GTG ...

VGP ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain
372824 87

CTG ...

LPS ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain
147430 144

CTG ...

LLG ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain
321998 90

TTG ...

LYP ...

Ribo-seq
TTG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain
240011 63

CTG ...

LSW ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
38011 ENSMUST00000027727 Adipor1-201 protein_coding
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

943198 231

ATC ...

ITG ...

Ribo-seq
ATC

1 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
BMDC
132945 147

ATG ...

MLL ...

Ribo-seq
ATG

2 sORFs_org_Mouse
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Glioma, Liver,
MEF, MESC
342762 144

CTG ...

LAL ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
130013 141

CTG ...

LCP ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, E14
739454 66

CTG ...

LVL ...

Ribo-seq
CTG

strong

3 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, E14, R1E
74492 60

CTG ...

LRK ...

Ribo-seq
CTG

moderate

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Neutrophil, R1E
331064 39

CTG ...

LYR ...

Ribo-seq
CTG

weak

1 sORFs_org_Mouse
    Downstream
    Overlapping
    sORF
R1E
726347 36

CTG ...

LGL ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
B_cell
540936 273

CTG ...

LPS ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
3T3, B_cell
308446 123

CTG ...

LLP ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, E14
102950 177

CTG ...

LKL ...

Ribo-seq
CTG

7 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
B_cell, BMDC, C2C12,
E14, MEF, Neutrophil,
R1E
147430 144

CTG ...

LLG ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
114304 201

CTG ...

LAL ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, E14
288699 81

CTG ...

LPQ ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
93834 63

CTG ...

LRA ...

Ribo-seq
CTG

weak

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Brain
387515 30

TTG ...

LCY ...

Ribo-seq
TTG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
v6-5
307877 129

CTG ...

LAE ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, MEF
120307 105

GTG ...

VGP ...

Ribo-seq
GTG

2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, E14
344214 51

CTG ...

LLG ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
724258 30

CTG ...

LRD ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
B_cell
151565 180

CTG ...

LLP ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, E14
326983 84

CTG ...

LCP ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, E14
405564 108

ATG ...

MGL ...

Ribo-seq
ATG

5 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell, E14, MEF,
Neutrophil, R1E
38010 48

GTG ...

VGP ...

Ribo-seq
GTG

3 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, E14, Testis
312131 54

ATG ...

MLL ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
341915 216

CTG ...

LPS ...

Ribo-seq
CTG

5 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
B_cell, E14, MEF,
Neutrophil, R1E
124422 165

ATG ...

MGL ...

Ribo-seq
ATG

8 sORFs_org_Mouse
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, E14,
Glioma, Liver, MEF,
MESC, Neutrophil, R1E,
Spleen_B_cell
298178 72

CTG ...

LRY ...

Ribo-seq
CTG

moderate

7 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
B_cell, BMDC, C2C12,
E14, MEF, Neutrophil
405509 54

TTG ...

LSR ...

Ribo-seq
TTG

moderate

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, BMDC, Brain
112774 138

CTG ...

LTQ ...

Ribo-seq
CTG

7 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, E14,
MEF, Neutrophil, R1E,
Spleen_B_cell
895049 237

AGG ...

RDC ...

Ribo-seq
AGG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC
135977 153

CTG ...

LVT ...

Ribo-seq
CTG

7 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, E14,
MEF, Neutrophil, R1E,
Spleen_B_cell
300560 45

CTG ...

LSF ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14, R1E
372824 87

CTG ...

LPS ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
400193 99

ATG ...

MPG ...

Ribo-seq
ATG

moderate

1 Johnstone2016
    InCDS
    Overlapping
    sORF
Glioma, Liver, MEF,
MESC
894662 189

AAG ...

KAL ...

Ribo-seq
AAG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
416152 228

CTG ...

LPG ...

Ribo-seq
CTG

3 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
3T3, B_cell, C2C12
108940 183

CTG ...

LPG ...

Ribo-seq
CTG

7 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, E14,
MEF, Neutrophil, R1E,
Spleen_B_cell
121816 120

CTG ...

LSW ...

Ribo-seq
CTG

4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell, E14, Neutrophil,
R1E
369992 66

TTG ...

LLQ ...

Ribo-seq
TTG

5 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, E14, Liver,
MEF, v6-5
240011 63

CTG ...

LSW ...

Ribo-seq
CTG

4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell, E14, MEF,
Neutrophil
294742 126

CTG ...

LPG ...

Ribo-seq
CTG

5 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell, E14, MEF,
Neutrophil, R1E
337490 171

CTG ...

LPG ...

Ribo-seq
CTG

5 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
B_cell, C2C12, MEF,
Neutrophil, R1E
114151 132

CTG ...

LSA ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
962981 132

AAG ...

KAL ...

Ribo-seq
AAG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
310148 96

CTG ...

LVT ...

Ribo-seq
CTG

5 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell, E14, MEF,
Neutrophil, R1E
928612 180

AGG ...

RDC ...

Ribo-seq
AGG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC
387130 39

ATG ...

MVC ...

Ribo-seq
ATG

moderate

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, R1E
415875 234

CTG ...

LKL ...

Ribo-seq
CTG

3 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
3T3, B_cell, C2C12
396251 36

GTG ...

VCP ...

Ribo-seq
GTG

moderate

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, R1E, Spleen_B_cell
141698 72

CTG ...

LST ...

Ribo-seq
CTG

6 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Brain, E14,
MEF, R1E
298773 81

CTG ...

LTQ ...

Ribo-seq
CTG

4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell, E14, MEF,
Neutrophil
965566 75

ACG ...

TSW ...

Ribo-seq
ACG

weak

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
364102 66

CTG ...

LAL ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14, R1E
3024208 UNKNOWN_TRANSCRIPT
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

124422 165

ATG ...

MGL ...

Predicted
ATG

1 Samandi2017
    sORF
400193 99

ATG ...

MPG ...

Predicted
ATG

1 Samandi2017
    sORF
132945 147

ATG ...

MLL ...

Predicted
ATG

1 Samandi2017
    sORF

ORFs

92 ORFs
3 known transcripts
140 ORF to known transcript associations

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF Length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Start codon

The start codon sequence of the ORF.

ORF annotations

A comma-separated list of all the annotations computed by our algorithm for the ORF. This list includes the annotations computed for the ORF for all transcripts. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of all the cell types in which the ORF has already been identified.

Transcripts

Display all the transcripts related to the entry.

398321 33

CTG...

LGG...

CTG Intronic
sORF
Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

20943 ENSMUST00000148822 Adipor1-203 retained_intron Ribo-seq
strong 1 sORFs_org_Mouse
341915 216

CTG...

LPS...

CTG Intronic
sORF
Alternative
Overlapping
Upstream
3T3, Brain, Spleen_B_cell,
B_cell, E14, MEF,
Neutrophil, R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

20943 ENSMUST00000148822 Adipor1-203 retained_intron Ribo-seq
3 sORFs_org_Mouse
38011 ENSMUST00000027727 Adipor1-201 protein_coding Ribo-seq
5 sORFs_org_Mouse
1227515 93

AGG...

RAS...

AGG Alternative
InCDS
Overlapping
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

108941 ENSMUST00000112237 Adipor1-202 protein_coding Ribo-seq
1 sORFs_org_Mouse
349762 96

GTG...

VVL...

GTG Alternative
InCDS
Overlapping
sORF
Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

108941 ENSMUST00000112237 Adipor1-202 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
943198 231

ATC...

ITG...

ATC Alternative
Overlapping
sORF
Upstream
BMDC, E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

38011 ENSMUST00000027727 Adipor1-201 protein_coding Ribo-seq
1 sORFs_org_Mouse
108941 ENSMUST00000112237 Adipor1-202 protein_coding Ribo-seq
1 sORFs_org_Mouse
288699 81

CTG...

LPQ...

CTG Intronic
sORF
InCDS
Overlapping
Brain, E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

20943 ENSMUST00000148822 Adipor1-203 retained_intron Ribo-seq
moderate 1 sORFs_org_Mouse
38011 ENSMUST00000027727 Adipor1-201 protein_coding Ribo-seq
1 sORFs_org_Mouse
344214 51

CTG...

LLG...

CTG Alternative
InCDS
Overlapping
sORF
Brain, E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

108941 ENSMUST00000112237 Adipor1-202 protein_coding Ribo-seq
1 sORFs_org_Mouse
38011 ENSMUST00000027727 Adipor1-201 protein_coding Ribo-seq
1 sORFs_org_Mouse
132945 147

ATG...

MLL...

ATG Alternative
InCDS
Overlapping
sORF
3T3, Glioma, Liver,
MEF, MESC,
Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

38011 ENSMUST00000027727 Adipor1-201 protein_coding Ribo-seq
2 sORFs_org_Mouse
Johnstone2016
3024208 UNKNOWN_TRANSCRIPT Predicted
1 Samandi2017
108941 ENSMUST00000112237 Adipor1-202 protein_coding Ribo-seq
1 sORFs_org_Mouse
342762 144

CTG...

LAL...

CTG InCDS
Overlapping
sORF
E14, Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

38011 ENSMUST00000027727 Adipor1-201 protein_coding Ribo-seq
1 sORFs_org_Mouse
108941 ENSMUST00000112237 Adipor1-202 protein_coding Ribo-seq
1 sORFs_org_Mouse
120307 105

GTG...

VGP...

GTG InCDS
Overlapping
sORF
Brain, 3T3, E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

108941 ENSMUST00000112237 Adipor1-202 protein_coding Ribo-seq
1 sORFs_org_Mouse
38011 ENSMUST00000027727 Adipor1-201 protein_coding Ribo-seq
2 sORFs_org_Mouse
724258 30

CTG...

LRD...

CTG Intronic
sORF
Alternative
Upstream
3T3, B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

20943 ENSMUST00000148822 Adipor1-203 retained_intron Ribo-seq
moderate 1 sORFs_org_Mouse
38011 ENSMUST00000027727 Adipor1-201 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
300560 45

CTG...

LSF...

CTG Intronic
sORF
InCDS
Overlapping
Brain, MEF, E14,
R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

20943 ENSMUST00000148822 Adipor1-203 retained_intron Ribo-seq
weak 2 sORFs_org_Mouse
38011 ENSMUST00000027727 Adipor1-201 protein_coding Ribo-seq
2 sORFs_org_Mouse
74492 60

CTG...

LRK...

CTG Intronic
sORF
Alternative
InCDS
Overlapping
3T3, B_cell, Brain,
Spleen_B_cell, Testis, Neutrophil,
R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

20943 ENSMUST00000148822 Adipor1-203 retained_intron Ribo-seq
moderate 5 sORFs_org_Mouse
38011 ENSMUST00000027727 Adipor1-201 protein_coding Ribo-seq
moderate 2 sORFs_org_Mouse
345243 66

CTG...

LTL...

CTG Intronic
sORF
3T3, Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

20943 ENSMUST00000148822 Adipor1-203 retained_intron Ribo-seq
moderate 2 sORFs_org_Mouse
130013 141

CTG...

LCP...

CTG InCDS
Overlapping
sORF
3T3, E14, Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

38011 ENSMUST00000027727 Adipor1-201 protein_coding Ribo-seq
2 sORFs_org_Mouse
108941 ENSMUST00000112237 Adipor1-202 protein_coding Ribo-seq
1 sORFs_org_Mouse
739454 66

CTG...

LVL...

CTG InCDS
Overlapping
sORF
3T3, E14, R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

38011 ENSMUST00000027727 Adipor1-201 protein_coding Ribo-seq
strong 3 sORFs_org_Mouse
400869 90

ATG...

MSR...

ATG Intronic
sORF
Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

20943 ENSMUST00000148822 Adipor1-203 retained_intron Ribo-seq
1 sORFs_org_Mouse
22962 90

GTG...

VRE...

GTG Intronic
sORF
Testis
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

20943 ENSMUST00000148822 Adipor1-203 retained_intron Ribo-seq
1 sORFs_org_Mouse
1294026 33

AGG...

RSN...

AGG Alternative
sORF
Upstream
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

108941 ENSMUST00000112237 Adipor1-202 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
114151 132

CTG...

LSA...

CTG Alternative
InCDS
Overlapping
sORF
Brain, 3T3
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

108941 ENSMUST00000112237 Adipor1-202 protein_coding Ribo-seq
1 sORFs_org_Mouse
38011 ENSMUST00000027727 Adipor1-201 protein_coding Ribo-seq
1 sORFs_org_Mouse
400193 99

ATG...

MPG...

ATG Intronic
sORF
InCDS
Overlapping
3T3, Brain, Glioma,
Liver, MEF, MESC,
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

20943 ENSMUST00000148822 Adipor1-203 retained_intron Ribo-seq
moderate 2 sORFs_org_Mouse
38011 ENSMUST00000027727 Adipor1-201 protein_coding Ribo-seq
moderate 1 Johnstone2016
3024208 UNKNOWN_TRANSCRIPT Predicted
1 Samandi2017
405564 108

ATG...

MGL...

ATG Alternative
InCDS
Overlapping
sORF
Intronic
E14, 3T3, Brain,
Spleen_B_cell, B_cell, MEF,
Neutrophil, R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

108941 ENSMUST00000112237 Adipor1-202 protein_coding Ribo-seq
1 sORFs_org_Mouse
20943 ENSMUST00000148822 Adipor1-203 retained_intron Ribo-seq
3 sORFs_org_Mouse
38011 ENSMUST00000027727 Adipor1-201 protein_coding Ribo-seq
5 sORFs_org_Mouse
369992 66

TTG...

LLQ...

TTG Intronic
sORF
Alternative
InCDS
Overlapping
3T3, Brain, BMDC,
E14, Liver, MEF,
v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

20943 ENSMUST00000148822 Adipor1-203 retained_intron Ribo-seq
2 sORFs_org_Mouse
38011 ENSMUST00000027727 Adipor1-201 protein_coding Ribo-seq
5 sORFs_org_Mouse
294742 126

CTG...

LPG...

CTG Intronic
sORF
Alternative
InCDS
Overlapping
3T3, Brain, Spleen_B_cell,
B_cell, E14, MEF,
Neutrophil, R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

20943 ENSMUST00000148822 Adipor1-203 retained_intron Ribo-seq
3 sORFs_org_Mouse
38011 ENSMUST00000027727 Adipor1-201 protein_coding Ribo-seq
5 sORFs_org_Mouse
331064 39

CTG...

LYR...

CTG Downstream
Overlapping
sORF
R1E, Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

38011 ENSMUST00000027727 Adipor1-201 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
108941 ENSMUST00000112237 Adipor1-202 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
401562 78

TTG...

LLC...

TTG Intronic
sORF
Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

20943 ENSMUST00000148822 Adipor1-203 retained_intron Ribo-seq
1 sORFs_org_Mouse
726347 36

CTG...

LGL...

CTG Alternative
sORF
Upstream
Intronic
B_cell, 3T3
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

38011 ENSMUST00000027727 Adipor1-201 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
20943 ENSMUST00000148822 Adipor1-203 retained_intron Ribo-seq
moderate 1 sORFs_org_Mouse
1309383 39

ATC...

IRR...

ATC Alternative
sORF
Upstream
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

108941 ENSMUST00000112237 Adipor1-202 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
540936 273

CTG...

LPS...

CTG Alternative
Overlapping
sORF
Upstream
3T3, B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

38011 ENSMUST00000027727 Adipor1-201 protein_coding Ribo-seq
2 sORFs_org_Mouse
293353 69

GTG...

VLT...

GTG Intronic
sORF
3T3, Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

20943 ENSMUST00000148822 Adipor1-203 retained_intron Ribo-seq
weak 2 sORFs_org_Mouse
114304 201

CTG...

LAL...

CTG InCDS
Overlapping
sORF
Brain, 3T3, E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

108941 ENSMUST00000112237 Adipor1-202 protein_coding Ribo-seq
1 sORFs_org_Mouse
38011 ENSMUST00000027727 Adipor1-201 protein_coding Ribo-seq
2 sORFs_org_Mouse
308446 123

CTG...

LLP...

CTG InCDS
Overlapping
sORF
3T3, E14, Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

38011 ENSMUST00000027727 Adipor1-201 protein_coding Ribo-seq
2 sORFs_org_Mouse
108941 ENSMUST00000112237 Adipor1-202 protein_coding Ribo-seq
1 sORFs_org_Mouse
51620 126

CTG...

LLA...

CTG Intronic
sORF
3T3, Testis
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

20943 ENSMUST00000148822 Adipor1-203 retained_intron Ribo-seq
2 sORFs_org_Mouse
102950 177

CTG...

LKL...

CTG Alternative
Overlapping
sORF
Upstream
Intronic
B_cell, BMDC, C2C12,
E14, MEF, Neutrophil,
R1E, 3T3, Brain,
Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

38011 ENSMUST00000027727 Adipor1-201 protein_coding Ribo-seq
7 sORFs_org_Mouse
108941 ENSMUST00000112237 Adipor1-202 protein_coding Ribo-seq
1 sORFs_org_Mouse
20943 ENSMUST00000148822 Adipor1-203 retained_intron Ribo-seq
4 sORFs_org_Mouse
147430 144

CTG...

LLG...

CTG Alternative
InCDS
Overlapping
sORF
3T3, Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

38011 ENSMUST00000027727 Adipor1-201 protein_coding Ribo-seq
1 sORFs_org_Mouse
108941 ENSMUST00000112237 Adipor1-202 protein_coding Ribo-seq
1 sORFs_org_Mouse
364102 66

CTG...

LAL...

CTG Intronic
sORF
InCDS
Overlapping
Brain, E14, R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

20943 ENSMUST00000148822 Adipor1-203 retained_intron Ribo-seq
moderate 1 sORFs_org_Mouse
38011 ENSMUST00000027727 Adipor1-201 protein_coding Ribo-seq
2 sORFs_org_Mouse
73601 123

CTG...

LQE...

CTG Intronic
sORF
3T3, Brain, Testis
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

20943 ENSMUST00000148822 Adipor1-203 retained_intron Ribo-seq
weak 4 sORFs_org_Mouse
1287239 36

AGG...

RAS...

AGG Alternative
InCDS
Overlapping
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

108941 ENSMUST00000112237 Adipor1-202 protein_coding Ribo-seq
1 sORFs_org_Mouse
405662 93

GTG...

VLY...

GTG Alternative
InCDS
Overlapping
sORF
Brain, E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

108941 ENSMUST00000112237 Adipor1-202 protein_coding Ribo-seq
moderate 2 sORFs_org_Mouse
310148 96

CTG...

LVT...

CTG Alternative
InCDS
Overlapping
sORF
Intronic
E14, B_cell, MEF,
Neutrophil, R1E, 3T3,
Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

108941 ENSMUST00000112237 Adipor1-202 protein_coding Ribo-seq
1 sORFs_org_Mouse
38011 ENSMUST00000027727 Adipor1-201 protein_coding Ribo-seq
5 sORFs_org_Mouse
20943 ENSMUST00000148822 Adipor1-203 retained_intron Ribo-seq
2 sORFs_org_Mouse
93834 63

CTG...

LRA...

CTG Alternative
InCDS
Overlapping
sORF
3T3, Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

38011 ENSMUST00000027727 Adipor1-201 protein_coding Ribo-seq
weak 2 sORFs_org_Mouse
63359 81

GTG...

VLC...

GTG Intronic
sORF
3T3, Brain, Testis
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

20943 ENSMUST00000148822 Adipor1-203 retained_intron Ribo-seq
moderate 4 sORFs_org_Mouse
396251 36

GTG...

VCP...

GTG Alternative
InCDS
Overlapping
sORF
Brain, 3T3, R1E,
Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

108941 ENSMUST00000112237 Adipor1-202 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
38011 ENSMUST00000027727 Adipor1-201 protein_coding Ribo-seq
moderate 3 sORFs_org_Mouse
387515 30

TTG...

LCY...

TTG Intronic
sORF
Alternative
InCDS
Overlapping
Brain, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

20943 ENSMUST00000148822 Adipor1-203 retained_intron Ribo-seq
moderate 1 sORFs_org_Mouse
38011 ENSMUST00000027727 Adipor1-201 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
39478 90

CTG...

LGA...

CTG Intronic
sORF
3T3, Brain, MEF,
Testis
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

20943 ENSMUST00000148822 Adipor1-203 retained_intron Ribo-seq
moderate 5 sORFs_org_Mouse
24911 129

CTG...

LKD...

CTG Intronic
sORF
3T3, Brain, MEF,
Testis
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

20943 ENSMUST00000148822 Adipor1-203 retained_intron Ribo-seq
5 sORFs_org_Mouse
298773 81

CTG...

LTQ...

CTG Intronic
sORF
Alternative
InCDS
Overlapping
3T3, Brain, B_cell,
E14, MEF, Neutrophil
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

20943 ENSMUST00000148822 Adipor1-203 retained_intron Ribo-seq
2 sORFs_org_Mouse
38011 ENSMUST00000027727 Adipor1-201 protein_coding Ribo-seq
4 sORFs_org_Mouse
307877 129

CTG...

LAE...

CTG Alternative
InCDS
Overlapping
sORF
Intronic
E14, MEF, 3T3,
Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

38011 ENSMUST00000027727 Adipor1-201 protein_coding Ribo-seq
2 sORFs_org_Mouse
20943 ENSMUST00000148822 Adipor1-203 retained_intron Ribo-seq
2 sORFs_org_Mouse
326983 84

CTG...

LCP...

CTG InCDS
Overlapping
sORF
Brain, 3T3, E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

108941 ENSMUST00000112237 Adipor1-202 protein_coding Ribo-seq
1 sORFs_org_Mouse
38011 ENSMUST00000027727 Adipor1-201 protein_coding Ribo-seq
2 sORFs_org_Mouse
387130 39

ATG...

MVC...

ATG Alternative
InCDS
Overlapping
sORF
Brain, 3T3, R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

108941 ENSMUST00000112237 Adipor1-202 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
38011 ENSMUST00000027727 Adipor1-201 protein_coding Ribo-seq
moderate 2 sORFs_org_Mouse
337490 171

CTG...

LPG...

CTG Intronic
sORF
Alternative
Overlapping
Upstream
3T3, Brain, E14,
Spleen_B_cell, B_cell, C2C12,
MEF, Neutrophil, R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

20943 ENSMUST00000148822 Adipor1-203 retained_intron Ribo-seq
5 sORFs_org_Mouse
38011 ENSMUST00000027727 Adipor1-201 protein_coding Ribo-seq
5 sORFs_org_Mouse
1213532 87

CTG...

LDR...

CTG Alternative
sORF
Upstream
E14, MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

108941 ENSMUST00000112237 Adipor1-202 protein_coding Ribo-seq
3 sORFs_org_Mouse
151565 180

CTG...

LLP...

CTG InCDS
Overlapping
sORF
3T3, E14, Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

38011 ENSMUST00000027727 Adipor1-201 protein_coding Ribo-seq
2 sORFs_org_Mouse
108941 ENSMUST00000112237 Adipor1-202 protein_coding Ribo-seq
1 sORFs_org_Mouse
30651 111

GTG...

VVF...

GTG Intronic
sORF
3T3, Brain, Testis
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

20943 ENSMUST00000148822 Adipor1-203 retained_intron Ribo-seq
strong 4 sORFs_org_Mouse
41112 144

GTG...

VLP...

GTG Intronic
sORF
3T3, Brain, MEF,
Testis
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

20943 ENSMUST00000148822 Adipor1-203 retained_intron Ribo-seq
5 sORFs_org_Mouse
342911 39

CTG...

LSA...

CTG Alternative
InCDS
Overlapping
sORF
Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

108941 ENSMUST00000112237 Adipor1-202 protein_coding Ribo-seq
1 sORFs_org_Mouse
38010 48

GTG...

VGP...

GTG InCDS
Overlapping
sORF
3T3, E14, Testis,
Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

38011 ENSMUST00000027727 Adipor1-201 protein_coding Ribo-seq
3 sORFs_org_Mouse
108941 ENSMUST00000112237 Adipor1-202 protein_coding Ribo-seq
1 sORFs_org_Mouse
312131 54

ATG...

MLL...

ATG Alternative
InCDS
Overlapping
sORF
E14, Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

38011 ENSMUST00000027727 Adipor1-201 protein_coding Ribo-seq
1 sORFs_org_Mouse
108941 ENSMUST00000112237 Adipor1-202 protein_coding Ribo-seq
1 sORFs_org_Mouse
124422 165

ATG...

MGL...

ATG Alternative
InCDS
Overlapping
sORF
Brain, E14, 3T3,
B_cell, Glioma, Liver,
MEF, MESC, Neutrophil,
R1E, Spleen_B_cell,
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

108941 ENSMUST00000112237 Adipor1-202 protein_coding Ribo-seq
2 sORFs_org_Mouse
38011 ENSMUST00000027727 Adipor1-201 protein_coding Ribo-seq
8 sORFs_org_Mouse
Johnstone2016
3024208 UNKNOWN_TRANSCRIPT Predicted
1 Samandi2017
349967 75

GTG...

VRV...

GTG Intronic
sORF
3T3, Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

20943 ENSMUST00000148822 Adipor1-203 retained_intron Ribo-seq
moderate 2 sORFs_org_Mouse
112774 138

CTG...

LTQ...

CTG Alternative
InCDS
Overlapping
sORF
Brain, 3T3, B_cell,
E14, MEF, Neutrophil,
R1E, Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

108941 ENSMUST00000112237 Adipor1-202 protein_coding Ribo-seq
1 sORFs_org_Mouse
38011 ENSMUST00000027727 Adipor1-201 protein_coding Ribo-seq
7 sORFs_org_Mouse
298178 72

CTG...

LRY...

CTG Alternative
Overlapping
sORF
Upstream
Intronic
B_cell, BMDC, C2C12,
E14, MEF, Neutrophil,
3T3, Brain, Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

38011 ENSMUST00000027727 Adipor1-201 protein_coding Ribo-seq
moderate 7 sORFs_org_Mouse
108941 ENSMUST00000112237 Adipor1-202 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
20943 ENSMUST00000148822 Adipor1-203 retained_intron Ribo-seq
moderate 4 sORFs_org_Mouse
355981 81

CTG...

LLL...

CTG Intronic
sORF
Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

20943 ENSMUST00000148822 Adipor1-203 retained_intron Ribo-seq
1 sORFs_org_Mouse
405509 54

TTG...

LSR...

TTG Alternative
InCDS
Overlapping
sORF
3T3, BMDC, Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

38011 ENSMUST00000027727 Adipor1-201 protein_coding Ribo-seq
moderate 3 sORFs_org_Mouse
895049 237

AGG...

RDC...

AGG InCDS
Overlapping
sORF
BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

38011 ENSMUST00000027727 Adipor1-201 protein_coding Ribo-seq
1 sORFs_org_Mouse
135977 153

CTG...

LVT...

CTG Alternative
InCDS
Overlapping
sORF
3T3, B_cell, E14,
MEF, Neutrophil, R1E,
Spleen_B_cell, Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

38011 ENSMUST00000027727 Adipor1-201 protein_coding Ribo-seq
7 sORFs_org_Mouse
108941 ENSMUST00000112237 Adipor1-202 protein_coding Ribo-seq
2 sORFs_org_Mouse
121816 120

CTG...

LSW...

CTG Alternative
InCDS
Overlapping
sORF
3T3, Brain, E14,
B_cell, Neutrophil, R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

108941 ENSMUST00000112237 Adipor1-202 protein_coding Ribo-seq
3 sORFs_org_Mouse
38011 ENSMUST00000027727 Adipor1-201 protein_coding Ribo-seq
4 sORFs_org_Mouse
20942 162

TTG...

LTM...

TTG Intronic
sORF
3T3, Brain, MEF,
Testis
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

20943 ENSMUST00000148822 Adipor1-203 retained_intron Ribo-seq
moderate 5 sORFs_org_Mouse
55191 123

CTG...

LAT...

CTG Alternative
sORF
Upstream
Intronic
E14, 3T3, Brain,
Testis
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

108941 ENSMUST00000112237 Adipor1-202 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
20943 ENSMUST00000148822 Adipor1-203 retained_intron Ribo-seq
3 sORFs_org_Mouse
372824 87

CTG...

LPS...

CTG Alternative
InCDS
Overlapping
sORF
3T3, Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

38011 ENSMUST00000027727 Adipor1-201 protein_coding Ribo-seq
1 sORFs_org_Mouse
108941 ENSMUST00000112237 Adipor1-202 protein_coding Ribo-seq
1 sORFs_org_Mouse
690550 72

CTG...

LQC...

CTG Intronic
sORF
3T3
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

20943 ENSMUST00000148822 Adipor1-203 retained_intron Ribo-seq
1 sORFs_org_Mouse
28621 69

GTG...

VAG...

GTG Intronic
sORF
3T3, Brain, Testis
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

20943 ENSMUST00000148822 Adipor1-203 retained_intron Ribo-seq
3 sORFs_org_Mouse
894662 189

AAG...

KAL...

AAG Alternative
InCDS
Overlapping
sORF
BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

38011 ENSMUST00000027727 Adipor1-201 protein_coding Ribo-seq
1 sORFs_org_Mouse
416152 228

CTG...

LPG...

CTG Alternative
Overlapping
sORF
Upstream
3T3, B_cell, C2C12
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

38011 ENSMUST00000027727 Adipor1-201 protein_coding Ribo-seq
3 sORFs_org_Mouse
108940 183

CTG...

LPG...

CTG Alternative
InCDS
Overlapping
sORF
3T3, B_cell, E14,
MEF, Neutrophil, R1E,
Spleen_B_cell, Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

38011 ENSMUST00000027727 Adipor1-201 protein_coding Ribo-seq
7 sORFs_org_Mouse
108941 ENSMUST00000112237 Adipor1-202 protein_coding Ribo-seq
1 sORFs_org_Mouse
393711 240

GTG...

VST...

GTG Intronic
sORF
3T3, Brain, Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

20943 ENSMUST00000148822 Adipor1-203 retained_intron Ribo-seq
3 sORFs_org_Mouse
37788 111

CTG...

LLH...

CTG Intronic
sORF
3T3, Brain, Testis
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

20943 ENSMUST00000148822 Adipor1-203 retained_intron Ribo-seq
4 sORFs_org_Mouse
371532 255

ATG...

MFV...

ATG Intronic
sORF
3T3, Brain, E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

20943 ENSMUST00000148822 Adipor1-203 retained_intron Ribo-seq
3 sORFs_org_Mouse
369393 54

CTG...

LQA...

CTG Intronic
sORF
3T3, Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

20943 ENSMUST00000148822 Adipor1-203 retained_intron Ribo-seq
weak 2 sORFs_org_Mouse
1271744 69

CTG...

LDR...

CTG Alternative
sORF
Upstream
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

108941 ENSMUST00000112237 Adipor1-202 protein_coding Ribo-seq
1 sORFs_org_Mouse
240011 63

CTG...

LSW...

CTG Alternative
InCDS
Overlapping
sORF
Intronic
B_cell, E14, MEF,
Neutrophil, 3T3, Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

38011 ENSMUST00000027727 Adipor1-201 protein_coding Ribo-seq
4 sORFs_org_Mouse
20943 ENSMUST00000148822 Adipor1-203 retained_intron Ribo-seq
2 sORFs_org_Mouse
108941 ENSMUST00000112237 Adipor1-202 protein_coding Ribo-seq
1 sORFs_org_Mouse
962981 132

AAG...

KAL...

AAG Alternative
InCDS
Overlapping
sORF
BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

38011 ENSMUST00000027727 Adipor1-201 protein_coding Ribo-seq
1 sORFs_org_Mouse
928612 180

AGG...

RDC...

AGG InCDS
Overlapping
sORF
BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

38011 ENSMUST00000027727 Adipor1-201 protein_coding Ribo-seq
1 sORFs_org_Mouse
415875 234

CTG...

LKL...

CTG Alternative
Overlapping
sORF
Upstream
3T3, B_cell, C2C12
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

38011 ENSMUST00000027727 Adipor1-201 protein_coding Ribo-seq
3 sORFs_org_Mouse
141698 72

CTG...

LST...

CTG Alternative
InCDS
Overlapping
sORF
3T3, Brain, E14,
MEF, R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

38011 ENSMUST00000027727 Adipor1-201 protein_coding Ribo-seq
6 sORFs_org_Mouse
35241 171

CTG...

LGI...

CTG Intronic
sORF
3T3, Brain, MEF,
Testis
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

20943 ENSMUST00000148822 Adipor1-203 retained_intron Ribo-seq
moderate 5 sORFs_org_Mouse
358052 99

GTG...

VPQ...

GTG Intronic
sORF
3T3, Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

20943 ENSMUST00000148822 Adipor1-203 retained_intron Ribo-seq
weak 2 sORFs_org_Mouse
370821 75

TTG...

LCS...

TTG Intronic
sORF
Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

20943 ENSMUST00000148822 Adipor1-203 retained_intron Ribo-seq
1 sORFs_org_Mouse
90333 153

CTG...

LRP...

CTG Intronic
sORF
3T3, Brain, MEF,
Testis
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

20943 ENSMUST00000148822 Adipor1-203 retained_intron Ribo-seq
moderate 5 sORFs_org_Mouse
32487 186

GTG...

VLF...

GTG Intronic
sORF
3T3, Brain, MEF,
Testis
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

20943 ENSMUST00000148822 Adipor1-203 retained_intron Ribo-seq
weak 5 sORFs_org_Mouse
321998 90

TTG...

LYP...

TTG Alternative
InCDS
Overlapping
sORF
Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

108941 ENSMUST00000112237 Adipor1-202 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
965566 75

ACG...

TSW...

ACG Alternative
InCDS
Overlapping
sORF
BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

38011 ENSMUST00000027727 Adipor1-201 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse

Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5