Metam
ORF

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Gene

Gene

ID CARD

ID

NCBI:68796

Aliases

1110039B18Rik
4921530J21Rik, AI841294, AU018742
C76280, ENSMUSG00000038828, MGI:1916046
NCBI:68796, OFF:Tmem214, Tmem214

Chromosome

5

Transcripts

92 ORFs
6 known transcripts
202 ORF to known transcript associations

MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

ORFs

Display all the transcripts related to the entry.

171654 ENSMUST00000201203 Tmem214-202 protein_coding
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

190730 78

ATG ...

MGT ...

Ribo-seq
ATG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Brain
1469303 168

CTG ...

LWY ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC
171653 75

ATG ...

MGT ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain
1469225 105

CTG ...

LPT ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC
563346 57

GTG ...

VEL ...

Ribo-seq
GTG

strong

1 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
B_cell
571133 84

GTG ...

VAE ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
573645 33

TTG ...

LPS ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
1090271 183

GTG ...

VCE ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Liver
181336 39

ATG ...

MSQ ...

Ribo-seq
ATG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain
523993 33

CTG ...

LQR ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, Spleen_B_cell
175946 33

CTG ...

LYS ...

Ribo-seq
CTG

weak

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain
572862 63

CTG ...

LCW ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
905891 72

GTG ...

VIA ...

Ribo-seq
GTG

2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC
832675 63

GTG ...

VGE ...

Ribo-seq
GTG

strong

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell
1469198 171

TTG ...

LLW ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC
832272 78

CTG ...

LEQ ...

Ribo-seq
CTG

strong

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell
179110 72

ATG ...

MWQ ...

Ribo-seq
ATG

weak

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell, Brain
1469286 126

ATG ...

MPY ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC
560956 60

GTG ...

VVE ...

Ribo-seq
GTG

strong

1 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
B_cell
1469598 96

GTG ...

VPP ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC
518468 51

CTG ...

LKS ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
B_cell
1469651 84

TTG ...

LPA ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC
524676 57

TTG ...

LQP ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Spleen_B_cell
516483 ENSMUST00000202050 Tmem214-205 retained_intron
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

62149 45

CTG ...

LDF ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    Intronic
    sORF
R1E, Spleen_B_cell
1019097 72

CTG ...

LPT ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Intronic
    sORF
R1E
65854 129

CTG ...

LDK ...

Ribo-seq
CTG

strong

3 sORFs_org_Mouse
    Intronic
    sORF
3T3, R1E, Spleen_B_cell
63396 45

GTG ...

VAF ...

Ribo-seq
GTG

strong

3 sORFs_org_Mouse
    Intronic
    sORF
3T3, R1E, Spleen_B_cell
63830 54

CTG ...

LLA ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Intronic
    sORF
R1E
64204 96

GTG ...

VTA ...

Ribo-seq
GTG

2 sORFs_org_Mouse
    Intronic
    sORF
3T3, R1E
65754 36

TTG ...

LDW ...

Ribo-seq
TTG

moderate

3 sORFs_org_Mouse
    Intronic
    sORF
3T3, R1E, Spleen_B_cell
63175 81

CTG ...

LGI ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    Intronic
    sORF
R1E, Spleen_B_cell
63022 93

CTG ...

LAS ...

Ribo-seq
CTG

3 sORFs_org_Mouse
    Intronic
    sORF
3T3, R1E, Spleen_B_cell
66098 222

CTG ...

LQE ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Intronic
    sORF
R1E
64533 156

CTG ...

LDV ...

Ribo-seq
CTG

strong

3 sORFs_org_Mouse
    Intronic
    sORF
3T3, R1E, Spleen_B_cell
63400 132

CTG ...

LQQ ...

Ribo-seq
CTG

3 sORFs_org_Mouse
    Intronic
    sORF
3T3, R1E, Spleen_B_cell
560956 60

GTG ...

VVE ...

Ribo-seq
GTG

strong

1 sORFs_org_Mouse
    Intronic
    sORF
3T3
64360 99

CTG ...

LLL ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    Intronic
    sORF
R1E, Spleen_B_cell
1019289 78

GTG ...

VLL ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    Intronic
    sORF
R1E
62278 111

GTG ...

VFT ...

Ribo-seq
GTG

moderate

2 sORFs_org_Mouse
    Intronic
    sORF
3T3, R1E
562933 57

CTG ...

LFL ...

Ribo-seq
CTG

weak

2 sORFs_org_Mouse
    Intronic
    sORF
3T3, R1E
173243 60

CTG ...

LGI ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    Intronic
    sORF
R1E, Spleen_B_cell
65158 60

CTG ...

LQD ...

Ribo-seq
CTG

weak

3 sORFs_org_Mouse
    Intronic
    sORF
3T3, R1E, Spleen_B_cell
63277 210

TTG ...

LPA ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    Intronic
    sORF
R1E
64038 111

TTG ...

LKE ...

Ribo-seq
TTG

2 sORFs_org_Mouse
    Intronic
    sORF
R1E, Spleen_B_cell
518468 51

CTG ...

LKS ...

Ribo-seq
CTG

moderate

2 sORFs_org_Mouse
    Intronic
    sORF
3T3, Spleen_B_cell
61861 63

TTG ...

LPV ...

Ribo-seq
TTG

3 sORFs_org_Mouse
    Intronic
    sORF
3T3, R1E, Spleen_B_cell
64744 96

CTG ...

LLF ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    Intronic
    sORF
R1E, Spleen_B_cell
63701 141

CTG ...

LQK ...

Ribo-seq
CTG

moderate

3 sORFs_org_Mouse
    Intronic
    sORF
3T3, R1E, Spleen_B_cell
64535 75

CTG ...

LLL ...

Ribo-seq
CTG

weak

3 sORFs_org_Mouse
    Intronic
    sORF
3T3, R1E, Spleen_B_cell
63009 120

TTG ...

LQR ...

Ribo-seq
TTG

weak

3 sORFs_org_Mouse
    Intronic
    sORF
3T3, R1E, Spleen_B_cell
168906 45

CTG ...

LSP ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    Intronic
    sORF
R1E, Spleen_B_cell
567240 39

GTG ...

VTA ...

Ribo-seq
GTG

moderate

1 sORFs_org_Mouse
    Intronic
    sORF
3T3
65504 33

CTG ...

LYP ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    Intronic
    sORF
3T3, R1E
63303 63

GTG ...

VLG ...

Ribo-seq
GTG

2 sORFs_org_Mouse
    Intronic
    sORF
R1E, Spleen_B_cell
179110 72

ATG ...

MWQ ...

Ribo-seq
ATG

weak

2 sORFs_org_Mouse
    Intronic
    sORF
3T3, MEF
61773 93

TTG ...

LSR ...

Ribo-seq
TTG

weak

3 sORFs_org_Mouse
    Intronic
    sORF
3T3, R1E, Spleen_B_cell
61490 69

CTG ...

LPV ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    Intronic
    sORF
R1E, Spleen_B_cell
566848 33

CTG ...

LRP ...

Ribo-seq
CTG

weak

1 sORFs_org_Mouse
    Intronic
    sORF
3T3
62443 84

CTG ...

LTQ ...

Ribo-seq
CTG

3 sORFs_org_Mouse
    Intronic
    sORF
3T3, R1E, Spleen_B_cell
64891 66

GTG ...

VDP ...

Ribo-seq
GTG

3 sORFs_org_Mouse
    Intronic
    sORF
3T3, R1E, Spleen_B_cell
61785 123

TTG ...

LLQ ...

Ribo-seq
TTG

moderate

2 sORFs_org_Mouse
    Intronic
    sORF
3T3, R1E
64482 84

CTG ...

LKD ...

Ribo-seq
CTG

weak

2 sORFs_org_Mouse
    Intronic
    sORF
3T3, R1E
61712 84

CTG ...

LLR ...

Ribo-seq
CTG

3 sORFs_org_Mouse
    Intronic
    sORF
3T3, R1E, Spleen_B_cell
64742 63

CTG ...

LKK ...

Ribo-seq
CTG

3 sORFs_org_Mouse
    Intronic
    sORF
3T3, R1E, Spleen_B_cell
1019631 75

CTG ...

LLP ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Intronic
    sORF
R1E
61967 150

GTG ...

VAA ...

Ribo-seq
GTG

strong

3 sORFs_org_Mouse
    Intronic
    sORF
3T3, R1E, Spleen_B_cell
1432968 42

CTG ...

LAQ ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Intronic
    sORF
R1E
65122 87

TTG ...

LKV ...

Ribo-seq
TTG

3 sORFs_org_Mouse
    Intronic
    sORF
3T3, R1E, Spleen_B_cell
62843 57

TTG ...

LLL ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    Intronic
    sORF
R1E
64336 66

CTG ...

LVF ...

Ribo-seq
CTG

moderate

3 sORFs_org_Mouse
    Intronic
    sORF
3T3, R1E, Spleen_B_cell
64230 72

CTG ...

LLL ...

Ribo-seq
CTG

weak

3 sORFs_org_Mouse
    Intronic
    sORF
3T3, R1E, Spleen_B_cell
64736 45

GTG ...

VCA ...

Ribo-seq
GTG

3 sORFs_org_Mouse
    Intronic
    sORF
3T3, R1E, Spleen_B_cell
62560 75

CTG ...

LAS ...

Ribo-seq
CTG

strong

2 sORFs_org_Mouse
    Intronic
    sORF
3T3, R1E
62480 102

CTG ...

LLL ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    Intronic
    sORF
R1E, Spleen_B_cell
64766 72

CTG ...

LTV ...

Ribo-seq
CTG

3 sORFs_org_Mouse
    Intronic
    sORF
3T3, R1E, Spleen_B_cell
65160 120

GTG ...

VTW ...

Ribo-seq
GTG

moderate

3 sORFs_org_Mouse
    Intronic
    sORF
3T3, R1E, Spleen_B_cell
563346 57

GTG ...

VEL ...

Ribo-seq
GTG

strong

1 sORFs_org_Mouse
    Intronic
    sORF
3T3
62852 90

GTG ...

VWL ...

Ribo-seq
GTG

weak

2 sORFs_org_Mouse
    Intronic
    sORF
3T3, R1E
65120 33

TTG ...

LRS ...

Ribo-seq
TTG

moderate

1 sORFs_org_Mouse
    Intronic
    sORF
3T3
67308 ENSMUST00000202774 Tmem214-206 processed_transcript
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

173243 60

CTG ...

LGI ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    ncRNA
    sORF
3T3
61490 69

CTG ...

LPV ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    ncRNA
    sORF
3T3
63175 81

CTG ...

LGI ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    ncRNA
    sORF
3T3
171653 75

ATG ...

MGT ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    ncRNA
    sORF
3T3
63303 63

GTG ...

VLG ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    ncRNA
    sORF
3T3
67307 276

CTG ...

LDK ...

Ribo-seq
CTG

4 sORFs_org_Mouse
    ncRNA
    sORF
Brain, Liver, R1E,
Testis
175946 33

CTG ...

LYS ...

Ribo-seq
CTG

weak

1 sORFs_org_Mouse
    ncRNA
    sORF
3T3
167637 ENSMUST00000202008 Tmem214-204 retained_intron
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

62480 102

CTG ...

LLL ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Intronic
    sORF
Brain
65120 33

TTG ...

LRS ...

Ribo-seq
TTG

2 sORFs_org_Mouse
    Intronic
    sORF
Brain
62443 84

CTG ...

LTQ ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    Intronic
    sORF
Brain, MEF
64336 66

CTG ...

LVF ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    Intronic
    sORF
Brain
65158 60

CTG ...

LQD ...

Ribo-seq
CTG

weak

3 sORFs_org_Mouse
    Intronic
    sORF
Brain, MEF
61861 63

TTG ...

LPV ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    Intronic
    sORF
Brain
168906 45

CTG ...

LSP ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    Intronic
    sORF
Brain
171678 69

CTG ...

LPN ...

Ribo-seq
CTG

moderate

3 sORFs_org_Mouse
    Intronic
    sORF
BMDC, Brain, MEF
64038 111

TTG ...

LKE ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    Intronic
    sORF
Brain
173243 60

CTG ...

LGI ...

Ribo-seq
CTG

strong

3 sORFs_org_Mouse
    Intronic
    sORF
Brain, MEF
63022 93

CTG ...

LAS ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Intronic
    sORF
MEF
63830 54

CTG ...

LLA ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    Intronic
    sORF
Brain
61490 69

CTG ...

LPV ...

Ribo-seq
CTG

moderate

3 sORFs_org_Mouse
    Intronic
    sORF
Brain, MEF
61773 93

TTG ...

LSR ...

Ribo-seq
TTG

weak

3 sORFs_org_Mouse
    Intronic
    sORF
Brain, MEF
175946 33

CTG ...

LYS ...

Ribo-seq
CTG

weak

1 sORFs_org_Mouse
    Intronic
    sORF
MEF
63400 132

CTG ...

LQQ ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Intronic
    sORF
Brain
64360 99

CTG ...

LLL ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Intronic
    sORF
Brain
1019289 78

GTG ...

VLL ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    Intronic
    sORF
Brain
63009 120

TTG ...

LQR ...

Ribo-seq
TTG

2 sORFs_org_Mouse
    Intronic
    sORF
Brain
64230 72

CTG ...

LLL ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    Intronic
    sORF
Brain
65754 36

TTG ...

LDW ...

Ribo-seq
TTG

moderate

1 sORFs_org_Mouse
    Intronic
    sORF
Brain
64535 75

CTG ...

LLL ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    Intronic
    sORF
Brain
1432386 57

CTG ...

LGP ...

Ribo-seq
CTG

optimal

1 sORFs_org_Mouse
    Intronic
    sORF
MEF
64742 63

CTG ...

LKK ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Intronic
    sORF
Brain
62843 57

TTG ...

LLL ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    Intronic
    sORF
Brain
61785 123

TTG ...

LLQ ...

Ribo-seq
TTG

3 sORFs_org_Mouse
    Intronic
    sORF
Brain, Neutrophil
63303 63

GTG ...

VLG ...

Ribo-seq
GTG

weak

3 sORFs_org_Mouse
    Intronic
    sORF
Brain, MEF
1019631 75

CTG ...

LLP ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Intronic
    sORF
Brain
63396 45

GTG ...

VAF ...

Ribo-seq
GTG

strong

2 sORFs_org_Mouse
    Intronic
    sORF
Brain, MEF
63175 81

CTG ...

LGI ...

Ribo-seq
CTG

moderate

3 sORFs_org_Mouse
    Intronic
    sORF
Brain, MEF
64744 96

CTG ...

LLF ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    Intronic
    sORF
Brain
1019097 72

CTG ...

LPT ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Intronic
    sORF
Brain
171653 75

ATG ...

MGT ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    Intronic
    sORF
MEF
61712 84

CTG ...

LLR ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Intronic
    sORF
Brain
62742 180

GTG ...

VVQ ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    Intronic
    sORF
BMDC
181336 39

ATG ...

MSQ ...

Ribo-seq
ATG

moderate

1 sORFs_org_Mouse
    Intronic
    sORF
MEF
62149 45

CTG ...

LDF ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Intronic
    sORF
Brain
64736 45

GTG ...

VCA ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    Intronic
    sORF
Brain
64766 72

CTG ...

LTV ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Intronic
    sORF
MEF
65160 120

GTG ...

VTW ...

Ribo-seq
GTG

moderate

3 sORFs_org_Mouse
    Intronic
    sORF
Brain, MEF
61491 ENSMUST00000202951 Tmem214-207 retained_intron
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

64535 75

CTG ...

LLL ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    Intronic
    sORF
Liver, Testis
1433070 33

CTG ...

LSI ...

Ribo-seq
CTG

weak

1 sORFs_org_Mouse
    Intronic
    sORF
Liver
62278 111

GTG ...

VFT ...

Ribo-seq
GTG

2 sORFs_org_Mouse
    Intronic
    sORF
Liver, Testis
1019097 72

CTG ...

LPT ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Intronic
    sORF
Liver
1467530 129

CTG ...

LWY ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Intronic
    sORF
BMDC
173243 60

CTG ...

LGI ...

Ribo-seq
CTG

strong

2 sORFs_org_Mouse
    Intronic
    sORF
BMDC, Liver
61861 63

TTG ...

LPV ...

Ribo-seq
TTG

3 sORFs_org_Mouse
    Intronic
    sORF
BMDC, Liver, Testis
63983 159

CTG ...

LAW ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Intronic
    sORF
Testis
62149 45

CTG ...

LDF ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    Intronic
    sORF
Liver, Testis
65754 36

TTG ...

LDW ...

Ribo-seq
TTG

moderate

2 sORFs_org_Mouse
    Intronic
    sORF
Liver, Testis
61712 84

CTG ...

LLR ...

Ribo-seq
CTG

3 sORFs_org_Mouse
    Intronic
    sORF
BMDC, Liver, Testis
64204 96

GTG ...

VTA ...

Ribo-seq
GTG

2 sORFs_org_Mouse
    Intronic
    sORF
Liver, Testis
66082 189

CTG ...

LLA ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Intronic
    sORF
Testis
1467370 132

TTG ...

LLW ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    Intronic
    sORF
BMDC
1432968 42

CTG ...

LAQ ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Intronic
    sORF
Liver
63303 63

GTG ...

VLG ...

Ribo-seq
GTG

weak

3 sORFs_org_Mouse
    Intronic
    sORF
BMDC, Liver, Testis
63400 132

CTG ...

LQQ ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    Intronic
    sORF
Liver, Testis
65158 60

CTG ...

LQD ...

Ribo-seq
CTG

weak

3 sORFs_org_Mouse
    Intronic
    sORF
BMDC, Liver, Testis
175946 33

CTG ...

LYS ...

Ribo-seq
CTG

weak

1 sORFs_org_Mouse
    Intronic
    sORF
Liver
64038 111

TTG ...

LKE ...

Ribo-seq
TTG

2 sORFs_org_Mouse
    Intronic
    sORF
Liver, Testis
1432386 57

CTG ...

LGP ...

Ribo-seq
CTG

optimal

1 sORFs_org_Mouse
    Intronic
    sORF
Liver
63009 120

TTG ...

LQR ...

Ribo-seq
TTG

2 sORFs_org_Mouse
    Intronic
    sORF
Liver, Testis
61785 123

TTG ...

LLQ ...

Ribo-seq
TTG

2 sORFs_org_Mouse
    Intronic
    sORF
Liver, Testis
64230 72

CTG ...

LLL ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    Intronic
    sORF
Liver, Testis
61967 150

GTG ...

VAA ...

Ribo-seq
GTG

2 sORFs_org_Mouse
    Intronic
    sORF
Liver, Testis
62843 57

TTG ...

LLL ...

Ribo-seq
TTG

2 sORFs_org_Mouse
    Intronic
    sORF
Liver, Testis
65122 87

TTG ...

LKV ...

Ribo-seq
TTG

3 sORFs_org_Mouse
    Intronic
    sORF
BMDC, Liver, Testis
168906 45

CTG ...

LSP ...

Ribo-seq
CTG

moderate

2 sORFs_org_Mouse
    Intronic
    sORF
BMDC, Liver
65854 129

CTG ...

LDK ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    Intronic
    sORF
Liver, Testis
64766 72

CTG ...

LTV ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    Intronic
    sORF
Liver, Testis
566848 33

CTG ...

LRP ...

Ribo-seq
CTG

weak

1 sORFs_org_Mouse
    Intronic
    sORF
BMDC
63175 81

CTG ...

LGI ...

Ribo-seq
CTG

moderate

3 sORFs_org_Mouse
    Intronic
    sORF
BMDC, Liver, Testis
63022 93

CTG ...

LAS ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    Intronic
    sORF
Liver, Testis
1019289 78

GTG ...

VLL ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    Intronic
    sORF
Liver
65120 33

TTG ...

LRS ...

Ribo-seq
TTG

2 sORFs_org_Mouse
    Intronic
    sORF
Liver, Testis
64360 99

CTG ...

LLL ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    Intronic
    sORF
Liver, Testis
66098 222

CTG ...

LQE ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    Intronic
    sORF
Liver, Testis
1467874 57

GTG ...

VPP ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    Intronic
    sORF
BMDC
1019631 75

CTG ...

LLP ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Intronic
    sORF
Liver
62443 84

CTG ...

LTQ ...

Ribo-seq
CTG

3 sORFs_org_Mouse
    Intronic
    sORF
Brain, Liver, Testis
562933 57

CTG ...

LFL ...

Ribo-seq
CTG

weak

1 sORFs_org_Mouse
    Intronic
    sORF
Liver
63277 210

TTG ...

LPA ...

Ribo-seq
TTG

2 sORFs_org_Mouse
    Intronic
    sORF
Liver, Testis
64736 45

GTG ...

VCA ...

Ribo-seq
GTG

3 sORFs_org_Mouse
    Intronic
    sORF
BMDC, Liver, Testis
62852 90

GTG ...

VWL ...

Ribo-seq
GTG

2 sORFs_org_Mouse
    Intronic
    sORF
Liver, Testis
63701 141

CTG ...

LQK ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    Intronic
    sORF
Liver, Testis
62560 75

CTG ...

LAS ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    Intronic
    sORF
Liver, Testis
63830 54

CTG ...

LLA ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    Intronic
    sORF
Liver, Testis
64533 156

CTG ...

LDV ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    Intronic
    sORF
Liver, Testis
64336 66

CTG ...

LVF ...

Ribo-seq
CTG

3 sORFs_org_Mouse
    Intronic
    sORF
BMDC, Liver, Testis
64744 96

CTG ...

LLF ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    Intronic
    sORF
Liver, Testis
65504 33

CTG ...

LYP ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    Intronic
    sORF
Liver, Testis
62480 102

CTG ...

LLL ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    Intronic
    sORF
Liver, Testis
64742 63

CTG ...

LKK ...

Ribo-seq
CTG

3 sORFs_org_Mouse
    Intronic
    sORF
BMDC, Liver, Testis
61490 69

CTG ...

LPV ...

Ribo-seq
CTG

moderate

3 sORFs_org_Mouse
    Intronic
    sORF
BMDC, Liver, Testis
61773 93

TTG ...

LSR ...

Ribo-seq
TTG

weak

3 sORFs_org_Mouse
    Intronic
    sORF
BMDC, Liver, Testis
64482 84

CTG ...

LKD ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    Intronic
    sORF
Liver, Testis
63396 45

GTG ...

VAF ...

Ribo-seq
GTG

strong

3 sORFs_org_Mouse
    Intronic
    sORF
BMDC, Liver, Testis
62273 165

CTG ...

LQL ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Intronic
    sORF
Testis
64891 66

GTG ...

VDP ...

Ribo-seq
GTG

2 sORFs_org_Mouse
    Intronic
    sORF
Liver, Testis
65160 120

GTG ...

VTW ...

Ribo-seq
GTG

moderate

3 sORFs_org_Mouse
    Intronic
    sORF
BMDC, Liver, Testis
62742 180

GTG ...

VVQ ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    Intronic
    sORF
Testis
1085724 ENSMUST00000114716 Tmem214-201 protein_coding
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

1089674 144

CTG ...

LAA ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
v6-5
523993 33

CTG ...

LQR ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
v6-5
175946 33

CTG ...

LYS ...

Ribo-seq
CTG

weak

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
v6-5
179110 72

ATG ...

MWQ ...

Ribo-seq
ATG

weak

3 sORFs_org_Mouse
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
Glioma, Liver, MEF,
MESC
1469243 186

GTG ...

VAP ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC
171678 69

CTG ...

LPN ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
1659851 69

CTG ...

LCW ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
190730 78

ATG ...

MGT ...

Ribo-seq
ATG

3 sORFs_org_Mouse
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
Glioma, Liver, MEF,
MESC
1086899 120

CTG ...

LWL ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
v6-5
1091094 171

CTG ...

LET ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
v6-5
1090271 183

GTG ...

VCE ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
v6-5
1085723 72

CTG ...

LDT ...

Ribo-seq
CTG

strong

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
v6-5
181336 39

ATG ...

MSQ ...

Ribo-seq
ATG

moderate

2 sORFs_org_Mouse
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
Glioma, Liver, MEF,
MESC
171653 75

ATG ...

MGT ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
572862 63

CTG ...

LCW ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF

ORFs

92 ORFs
6 known transcripts
202 ORF to known transcript associations

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF Length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Start codon

The start codon sequence of the ORF.

ORF annotations

A comma-separated list of all the annotations computed by our algorithm for the ORF. This list includes the annotations computed for the ORF for all transcripts. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of all the cell types in which the ORF has already been identified.

Transcripts

Display all the transcripts related to the entry.

190730 78

ATG...

MGT...

ATG Alternative
InCDS
Overlapping
sORF
3T3, Brain, Glioma,
Liver, MEF, MESC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

171654 ENSMUST00000201203 Tmem214-202 protein_coding Ribo-seq
2 sORFs_org_Mouse
1085724 ENSMUST00000114716 Tmem214-201 protein_coding Ribo-seq
3 sORFs_org_Mouse
Johnstone2016
62149 45

CTG...

LDF...

CTG Intronic
sORF
R1E, Spleen_B_cell, Liver,
Testis, Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

516483 ENSMUST00000202050 Tmem214-205 retained_intron Ribo-seq
2 sORFs_org_Mouse
61491 ENSMUST00000202951 Tmem214-207 retained_intron Ribo-seq
2 sORFs_org_Mouse
167637 ENSMUST00000202008 Tmem214-204 retained_intron Ribo-seq
1 sORFs_org_Mouse
1019097 72

CTG...

LPT...

CTG Intronic
sORF
R1E, Liver, Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

516483 ENSMUST00000202050 Tmem214-205 retained_intron Ribo-seq
1 sORFs_org_Mouse
61491 ENSMUST00000202951 Tmem214-207 retained_intron Ribo-seq
1 sORFs_org_Mouse
167637 ENSMUST00000202008 Tmem214-204 retained_intron Ribo-seq
1 sORFs_org_Mouse
173243 60

CTG...

LGI...

CTG ncRNA
sORF
Intronic
3T3, BMDC, Liver,
R1E, Spleen_B_cell, Brain,
MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

67308 ENSMUST00000202774 Tmem214-206 processed_transcript Ribo-seq
1 sORFs_org_Mouse
61491 ENSMUST00000202951 Tmem214-207 retained_intron Ribo-seq
strong 2 sORFs_org_Mouse
516483 ENSMUST00000202050 Tmem214-205 retained_intron Ribo-seq
2 sORFs_org_Mouse
167637 ENSMUST00000202008 Tmem214-204 retained_intron Ribo-seq
strong 3 sORFs_org_Mouse
62480 102

CTG...

LLL...

CTG Intronic
sORF
Brain, Liver, Testis,
R1E, Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

167637 ENSMUST00000202008 Tmem214-204 retained_intron Ribo-seq
1 sORFs_org_Mouse
61491 ENSMUST00000202951 Tmem214-207 retained_intron Ribo-seq
2 sORFs_org_Mouse
516483 ENSMUST00000202050 Tmem214-205 retained_intron Ribo-seq
2 sORFs_org_Mouse
64535 75

CTG...

LLL...

CTG Intronic
sORF
Liver, Testis, 3T3,
R1E, Spleen_B_cell, Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

61491 ENSMUST00000202951 Tmem214-207 retained_intron Ribo-seq
2 sORFs_org_Mouse
516483 ENSMUST00000202050 Tmem214-205 retained_intron Ribo-seq
weak 3 sORFs_org_Mouse
167637 ENSMUST00000202008 Tmem214-204 retained_intron Ribo-seq
2 sORFs_org_Mouse
61490 69

CTG...

LPV...

CTG ncRNA
sORF
Intronic
3T3, Brain, MEF,
R1E, Spleen_B_cell, BMDC,
Liver, Testis
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

67308 ENSMUST00000202774 Tmem214-206 processed_transcript Ribo-seq
1 sORFs_org_Mouse
167637 ENSMUST00000202008 Tmem214-204 retained_intron Ribo-seq
moderate 3 sORFs_org_Mouse
516483 ENSMUST00000202050 Tmem214-205 retained_intron Ribo-seq
2 sORFs_org_Mouse
61491 ENSMUST00000202951 Tmem214-207 retained_intron Ribo-seq
moderate 3 sORFs_org_Mouse
1433070 33

CTG...

LSI...

CTG Intronic
sORF
Liver
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

61491 ENSMUST00000202951 Tmem214-207 retained_intron Ribo-seq
weak 1 sORFs_org_Mouse
65854 129

CTG...

LDK...

CTG Intronic
sORF
3T3, R1E, Spleen_B_cell,
Liver, Testis
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

516483 ENSMUST00000202050 Tmem214-205 retained_intron Ribo-seq
strong 3 sORFs_org_Mouse
61491 ENSMUST00000202951 Tmem214-207 retained_intron Ribo-seq
2 sORFs_org_Mouse
62278 111

GTG...

VFT...

GTG Intronic
sORF
Liver, Testis, 3T3,
R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

61491 ENSMUST00000202951 Tmem214-207 retained_intron Ribo-seq
2 sORFs_org_Mouse
516483 ENSMUST00000202050 Tmem214-205 retained_intron Ribo-seq
moderate 2 sORFs_org_Mouse
63396 45

GTG...

VAF...

GTG Intronic
sORF
3T3, R1E, Spleen_B_cell,
Brain, MEF, BMDC,
Liver, Testis
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

516483 ENSMUST00000202050 Tmem214-205 retained_intron Ribo-seq
strong 3 sORFs_org_Mouse
167637 ENSMUST00000202008 Tmem214-204 retained_intron Ribo-seq
strong 2 sORFs_org_Mouse
61491 ENSMUST00000202951 Tmem214-207 retained_intron Ribo-seq
strong 3 sORFs_org_Mouse
1467530 129

CTG...

LWY...

CTG Intronic
sORF
BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

61491 ENSMUST00000202951 Tmem214-207 retained_intron Ribo-seq
1 sORFs_org_Mouse
63830 54

CTG...

LLA...

CTG Intronic
sORF
R1E, Brain, Liver,
Testis
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

516483 ENSMUST00000202050 Tmem214-205 retained_intron Ribo-seq
1 sORFs_org_Mouse
167637 ENSMUST00000202008 Tmem214-204 retained_intron Ribo-seq
2 sORFs_org_Mouse
61491 ENSMUST00000202951 Tmem214-207 retained_intron Ribo-seq
2 sORFs_org_Mouse
64204 96

GTG...

VTA...

GTG Intronic
sORF
3T3, R1E, Liver,
Testis
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

516483 ENSMUST00000202050 Tmem214-205 retained_intron Ribo-seq
2 sORFs_org_Mouse
61491 ENSMUST00000202951 Tmem214-207 retained_intron Ribo-seq
2 sORFs_org_Mouse
65120 33

TTG...

LRS...

TTG Intronic
sORF
Brain, Liver, Testis,
3T3
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

167637 ENSMUST00000202008 Tmem214-204 retained_intron Ribo-seq
2 sORFs_org_Mouse
61491 ENSMUST00000202951 Tmem214-207 retained_intron Ribo-seq
2 sORFs_org_Mouse
516483 ENSMUST00000202050 Tmem214-205 retained_intron Ribo-seq
moderate 1 sORFs_org_Mouse
61861 63

TTG...

LPV...

TTG Intronic
sORF
BMDC, Liver, Testis,
Brain, 3T3, R1E,
Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

61491 ENSMUST00000202951 Tmem214-207 retained_intron Ribo-seq
3 sORFs_org_Mouse
167637 ENSMUST00000202008 Tmem214-204 retained_intron Ribo-seq
1 sORFs_org_Mouse
516483 ENSMUST00000202050 Tmem214-205 retained_intron Ribo-seq
3 sORFs_org_Mouse
62443 84

CTG...

LTQ...

CTG Intronic
sORF
Brain, MEF, 3T3,
R1E, Spleen_B_cell, Liver,
Testis
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

167637 ENSMUST00000202008 Tmem214-204 retained_intron Ribo-seq
2 sORFs_org_Mouse
516483 ENSMUST00000202050 Tmem214-205 retained_intron Ribo-seq
3 sORFs_org_Mouse
61491 ENSMUST00000202951 Tmem214-207 retained_intron Ribo-seq
3 sORFs_org_Mouse
63983 159

CTG...

LAW...

CTG Intronic
sORF
Testis
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

61491 ENSMUST00000202951 Tmem214-207 retained_intron Ribo-seq
1 sORFs_org_Mouse
65754 36

TTG...

LDW...

TTG Intronic
sORF
3T3, R1E, Spleen_B_cell,
Liver, Testis, Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

516483 ENSMUST00000202050 Tmem214-205 retained_intron Ribo-seq
moderate 3 sORFs_org_Mouse
61491 ENSMUST00000202951 Tmem214-207 retained_intron Ribo-seq
moderate 2 sORFs_org_Mouse
167637 ENSMUST00000202008 Tmem214-204 retained_intron Ribo-seq
moderate 1 sORFs_org_Mouse
1469303 168

CTG...

LWY...

CTG InCDS
Overlapping
sORF
BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

171654 ENSMUST00000201203 Tmem214-202 protein_coding Ribo-seq
1 sORFs_org_Mouse
63175 81

CTG...

LGI...

CTG ncRNA
sORF
Intronic
3T3, R1E, Spleen_B_cell,
BMDC, Liver, Testis,
Brain, MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

67308 ENSMUST00000202774 Tmem214-206 processed_transcript Ribo-seq
1 sORFs_org_Mouse
516483 ENSMUST00000202050 Tmem214-205 retained_intron Ribo-seq
2 sORFs_org_Mouse
61491 ENSMUST00000202951 Tmem214-207 retained_intron Ribo-seq
moderate 3 sORFs_org_Mouse
167637 ENSMUST00000202008 Tmem214-204 retained_intron Ribo-seq
moderate 3 sORFs_org_Mouse
1089674 144

CTG...

LAA...

CTG Alternative
InCDS
Overlapping
sORF
v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1085724 ENSMUST00000114716 Tmem214-201 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
523993 33

CTG...

LQR...

CTG Alternative
InCDS
Overlapping
sORF
v6-5, BMDC, Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1085724 ENSMUST00000114716 Tmem214-201 protein_coding Ribo-seq
1 sORFs_org_Mouse
171654 ENSMUST00000201203 Tmem214-202 protein_coding Ribo-seq
2 sORFs_org_Mouse
175946 33

CTG...

LYS...

CTG Alternative
InCDS
Overlapping
sORF
Intronic
ncRNA
v6-5, Liver, MEF,
Brain, 3T3
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1085724 ENSMUST00000114716 Tmem214-201 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
61491 ENSMUST00000202951 Tmem214-207 retained_intron Ribo-seq
weak 1 sORFs_org_Mouse
167637 ENSMUST00000202008 Tmem214-204 retained_intron Ribo-seq
weak 1 sORFs_org_Mouse
171654 ENSMUST00000201203 Tmem214-202 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
67308 ENSMUST00000202774 Tmem214-206 processed_transcript Ribo-seq
weak 1 sORFs_org_Mouse
171653 75

ATG...

MGT...

ATG Alternative
InCDS
Overlapping
sORF
ncRNA
Intronic
Brain, 3T3, MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

171654 ENSMUST00000201203 Tmem214-202 protein_coding Ribo-seq
1 sORFs_org_Mouse
67308 ENSMUST00000202774 Tmem214-206 processed_transcript Ribo-seq
1 sORFs_org_Mouse
167637 ENSMUST00000202008 Tmem214-204 retained_intron Ribo-seq
1 sORFs_org_Mouse
1085724 ENSMUST00000114716 Tmem214-201 protein_coding Ribo-seq
1 sORFs_org_Mouse
63022 93

CTG...

LAS...

CTG Intronic
sORF
3T3, R1E, Spleen_B_cell,
MEF, Liver, Testis
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

516483 ENSMUST00000202050 Tmem214-205 retained_intron Ribo-seq
3 sORFs_org_Mouse
167637 ENSMUST00000202008 Tmem214-204 retained_intron Ribo-seq
1 sORFs_org_Mouse
61491 ENSMUST00000202951 Tmem214-207 retained_intron Ribo-seq
2 sORFs_org_Mouse
64336 66

CTG...

LVF...

CTG Intronic
sORF
Brain, BMDC, Liver,
Testis, 3T3, R1E,
Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

167637 ENSMUST00000202008 Tmem214-204 retained_intron Ribo-seq
2 sORFs_org_Mouse
61491 ENSMUST00000202951 Tmem214-207 retained_intron Ribo-seq
3 sORFs_org_Mouse
516483 ENSMUST00000202050 Tmem214-205 retained_intron Ribo-seq
moderate 3 sORFs_org_Mouse
61712 84

CTG...

LLR...

CTG Intronic
sORF
BMDC, Liver, Testis,
3T3, R1E, Spleen_B_cell,
Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

61491 ENSMUST00000202951 Tmem214-207 retained_intron Ribo-seq
3 sORFs_org_Mouse
516483 ENSMUST00000202050 Tmem214-205 retained_intron Ribo-seq
3 sORFs_org_Mouse
167637 ENSMUST00000202008 Tmem214-204 retained_intron Ribo-seq
1 sORFs_org_Mouse
1469225 105

CTG...

LPT...

CTG InCDS
Overlapping
sORF
BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

171654 ENSMUST00000201203 Tmem214-202 protein_coding Ribo-seq
1 sORFs_org_Mouse
563346 57

GTG...

VEL...

GTG Alternative
Overlapping
sORF
Upstream
Intronic
B_cell, 3T3
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

171654 ENSMUST00000201203 Tmem214-202 protein_coding Ribo-seq
strong 1 sORFs_org_Mouse
516483 ENSMUST00000202050 Tmem214-205 retained_intron Ribo-seq
strong 1 sORFs_org_Mouse
66098 222

CTG...

LQE...

CTG Intronic
sORF
R1E, Liver, Testis
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

516483 ENSMUST00000202050 Tmem214-205 retained_intron Ribo-seq
1 sORFs_org_Mouse
61491 ENSMUST00000202951 Tmem214-207 retained_intron Ribo-seq
2 sORFs_org_Mouse
65158 60

CTG...

LQD...

CTG Intronic
sORF
Brain, MEF, 3T3,
R1E, Spleen_B_cell, BMDC,
Liver, Testis
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

167637 ENSMUST00000202008 Tmem214-204 retained_intron Ribo-seq
weak 3 sORFs_org_Mouse
516483 ENSMUST00000202050 Tmem214-205 retained_intron Ribo-seq
weak 3 sORFs_org_Mouse
61491 ENSMUST00000202951 Tmem214-207 retained_intron Ribo-seq
weak 3 sORFs_org_Mouse
64533 156

CTG...

LDV...

CTG Intronic
sORF
3T3, R1E, Spleen_B_cell,
Liver, Testis
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

516483 ENSMUST00000202050 Tmem214-205 retained_intron Ribo-seq
strong 3 sORFs_org_Mouse
61491 ENSMUST00000202951 Tmem214-207 retained_intron Ribo-seq
2 sORFs_org_Mouse
63400 132

CTG...

LQQ...

CTG Intronic
sORF
3T3, R1E, Spleen_B_cell,
Liver, Testis, Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

516483 ENSMUST00000202050 Tmem214-205 retained_intron Ribo-seq
3 sORFs_org_Mouse
61491 ENSMUST00000202951 Tmem214-207 retained_intron Ribo-seq
2 sORFs_org_Mouse
167637 ENSMUST00000202008 Tmem214-204 retained_intron Ribo-seq
1 sORFs_org_Mouse
560956 60

GTG...

VVE...

GTG Intronic
sORF
Alternative
Overlapping
Upstream
3T3, B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

516483 ENSMUST00000202050 Tmem214-205 retained_intron Ribo-seq
strong 1 sORFs_org_Mouse
171654 ENSMUST00000201203 Tmem214-202 protein_coding Ribo-seq
strong 1 sORFs_org_Mouse
64360 99

CTG...

LLL...

CTG Intronic
sORF
R1E, Spleen_B_cell, Brain,
Liver, Testis
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

516483 ENSMUST00000202050 Tmem214-205 retained_intron Ribo-seq
2 sORFs_org_Mouse
167637 ENSMUST00000202008 Tmem214-204 retained_intron Ribo-seq
1 sORFs_org_Mouse
61491 ENSMUST00000202951 Tmem214-207 retained_intron Ribo-seq
2 sORFs_org_Mouse
66082 189

CTG...

LLA...

CTG Intronic
sORF
Testis
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

61491 ENSMUST00000202951 Tmem214-207 retained_intron Ribo-seq
1 sORFs_org_Mouse
179110 72

ATG...

MWQ...

ATG Alternative
InCDS
Overlapping
sORF
Intronic
Glioma, Liver, MEF,
MESC, 3T3, B_cell,
Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1085724 ENSMUST00000114716 Tmem214-201 protein_coding Ribo-seq
weak 3 sORFs_org_Mouse
Johnstone2016
516483 ENSMUST00000202050 Tmem214-205 retained_intron Ribo-seq
weak 2 sORFs_org_Mouse
171654 ENSMUST00000201203 Tmem214-202 protein_coding Ribo-seq
weak 2 sORFs_org_Mouse
1019289 78

GTG...

VLL...

GTG Intronic
sORF
R1E, Brain, Liver
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

516483 ENSMUST00000202050 Tmem214-205 retained_intron Ribo-seq
1 sORFs_org_Mouse
167637 ENSMUST00000202008 Tmem214-204 retained_intron Ribo-seq
1 sORFs_org_Mouse
61491 ENSMUST00000202951 Tmem214-207 retained_intron Ribo-seq
1 sORFs_org_Mouse
562933 57

CTG...

LFL...

CTG Intronic
sORF
3T3, R1E, Liver
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

516483 ENSMUST00000202050 Tmem214-205 retained_intron Ribo-seq
weak 2 sORFs_org_Mouse
61491 ENSMUST00000202951 Tmem214-207 retained_intron Ribo-seq
weak 1 sORFs_org_Mouse
571133 84

GTG...

VAE...

GTG Alternative
InCDS
Overlapping
sORF
3T3
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

171654 ENSMUST00000201203 Tmem214-202 protein_coding Ribo-seq
1 sORFs_org_Mouse
1467370 132

TTG...

LLW...

TTG Intronic
sORF
BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

61491 ENSMUST00000202951 Tmem214-207 retained_intron Ribo-seq
1 sORFs_org_Mouse
1469243 186

GTG...

VAP...

GTG InCDS
Overlapping
sORF
BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1085724 ENSMUST00000114716 Tmem214-201 protein_coding Ribo-seq
1 sORFs_org_Mouse
1432968 42

CTG...

LAQ...

CTG Intronic
sORF
Liver, R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

61491 ENSMUST00000202951 Tmem214-207 retained_intron Ribo-seq
1 sORFs_org_Mouse
516483 ENSMUST00000202050 Tmem214-205 retained_intron Ribo-seq
1 sORFs_org_Mouse
63303 63

GTG...

VLG...

GTG Intronic
sORF
ncRNA
BMDC, Liver, Testis,
3T3, R1E, Spleen_B_cell,
Brain, MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

61491 ENSMUST00000202951 Tmem214-207 retained_intron Ribo-seq
weak 3 sORFs_org_Mouse
67308 ENSMUST00000202774 Tmem214-206 processed_transcript Ribo-seq
1 sORFs_org_Mouse
516483 ENSMUST00000202050 Tmem214-205 retained_intron Ribo-seq
2 sORFs_org_Mouse
167637 ENSMUST00000202008 Tmem214-204 retained_intron Ribo-seq
weak 3 sORFs_org_Mouse
168906 45

CTG...

LSP...

CTG Intronic
sORF
Brain, BMDC, Liver,
R1E, Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

167637 ENSMUST00000202008 Tmem214-204 retained_intron Ribo-seq
moderate 1 sORFs_org_Mouse
61491 ENSMUST00000202951 Tmem214-207 retained_intron Ribo-seq
moderate 2 sORFs_org_Mouse
516483 ENSMUST00000202050 Tmem214-205 retained_intron Ribo-seq
2 sORFs_org_Mouse
171678 69

CTG...

LPN...

CTG Intronic
sORF
Alternative
InCDS
Overlapping
BMDC, Brain, MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

167637 ENSMUST00000202008 Tmem214-204 retained_intron Ribo-seq
moderate 3 sORFs_org_Mouse
1085724 ENSMUST00000114716 Tmem214-201 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
573645 33

TTG...

LPS...

TTG Alternative
InCDS
Overlapping
sORF
3T3
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

171654 ENSMUST00000201203 Tmem214-202 protein_coding Ribo-seq
1 sORFs_org_Mouse
64038 111

TTG...

LKE...

TTG Intronic
sORF
Brain, R1E, Spleen_B_cell,
Liver, Testis
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

167637 ENSMUST00000202008 Tmem214-204 retained_intron Ribo-seq
1 sORFs_org_Mouse
516483 ENSMUST00000202050 Tmem214-205 retained_intron Ribo-seq
2 sORFs_org_Mouse
61491 ENSMUST00000202951 Tmem214-207 retained_intron Ribo-seq
2 sORFs_org_Mouse
63277 210

TTG...

LPA...

TTG Intronic
sORF
R1E, Liver, Testis
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

516483 ENSMUST00000202050 Tmem214-205 retained_intron Ribo-seq
1 sORFs_org_Mouse
61491 ENSMUST00000202951 Tmem214-207 retained_intron Ribo-seq
2 sORFs_org_Mouse
518468 51

CTG...

LKS...

CTG Intronic
sORF
Alternative
Overlapping
Upstream
3T3, Spleen_B_cell, B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

516483 ENSMUST00000202050 Tmem214-205 retained_intron Ribo-seq
moderate 2 sORFs_org_Mouse
171654 ENSMUST00000201203 Tmem214-202 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
1090271 183

GTG...

VCE...

GTG InCDS
Overlapping
sORF
Liver, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

171654 ENSMUST00000201203 Tmem214-202 protein_coding Ribo-seq
1 sORFs_org_Mouse
1085724 ENSMUST00000114716 Tmem214-201 protein_coding Ribo-seq
1 sORFs_org_Mouse
181336 39

ATG...

MSQ...

ATG Alternative
InCDS
Overlapping
sORF
Intronic
Brain, Glioma, Liver,
MEF, MESC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

171654 ENSMUST00000201203 Tmem214-202 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
1085724 ENSMUST00000114716 Tmem214-201 protein_coding Ribo-seq
moderate 2 sORFs_org_Mouse
Johnstone2016
167637 ENSMUST00000202008 Tmem214-204 retained_intron Ribo-seq
moderate 1 sORFs_org_Mouse
61773 93

TTG...

LSR...

TTG Intronic
sORF
Brain, MEF, 3T3,
R1E, Spleen_B_cell, BMDC,
Liver, Testis
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

167637 ENSMUST00000202008 Tmem214-204 retained_intron Ribo-seq
weak 3 sORFs_org_Mouse
516483 ENSMUST00000202050 Tmem214-205 retained_intron Ribo-seq
weak 3 sORFs_org_Mouse
61491 ENSMUST00000202951 Tmem214-207 retained_intron Ribo-seq
weak 3 sORFs_org_Mouse
64744 96

CTG...

LLF...

CTG Intronic
sORF
R1E, Spleen_B_cell, Brain,
Liver, Testis
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

516483 ENSMUST00000202050 Tmem214-205 retained_intron Ribo-seq
2 sORFs_org_Mouse
167637 ENSMUST00000202008 Tmem214-204 retained_intron Ribo-seq
2 sORFs_org_Mouse
61491 ENSMUST00000202951 Tmem214-207 retained_intron Ribo-seq
2 sORFs_org_Mouse
1432386 57

CTG...

LGP...

CTG Intronic
sORF
Liver, MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

61491 ENSMUST00000202951 Tmem214-207 retained_intron Ribo-seq
optimal 1 sORFs_org_Mouse
167637 ENSMUST00000202008 Tmem214-204 retained_intron Ribo-seq
optimal 1 sORFs_org_Mouse
63009 120

TTG...

LQR...

TTG Intronic
sORF
Liver, Testis, 3T3,
R1E, Spleen_B_cell, Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

61491 ENSMUST00000202951 Tmem214-207 retained_intron Ribo-seq
2 sORFs_org_Mouse
516483 ENSMUST00000202050 Tmem214-205 retained_intron Ribo-seq
weak 3 sORFs_org_Mouse
167637 ENSMUST00000202008 Tmem214-204 retained_intron Ribo-seq
2 sORFs_org_Mouse
61785 123

TTG...

LLQ...

TTG Intronic
sORF
Liver, Testis, Brain,
Neutrophil, 3T3, R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

61491 ENSMUST00000202951 Tmem214-207 retained_intron Ribo-seq
2 sORFs_org_Mouse
167637 ENSMUST00000202008 Tmem214-204 retained_intron Ribo-seq
3 sORFs_org_Mouse
516483 ENSMUST00000202050 Tmem214-205 retained_intron Ribo-seq
moderate 2 sORFs_org_Mouse
63701 141

CTG...

LQK...

CTG Intronic
sORF
3T3, R1E, Spleen_B_cell,
Liver, Testis
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

516483 ENSMUST00000202050 Tmem214-205 retained_intron Ribo-seq
moderate 3 sORFs_org_Mouse
61491 ENSMUST00000202951 Tmem214-207 retained_intron Ribo-seq
2 sORFs_org_Mouse
64230 72

CTG...

LLL...

CTG Intronic
sORF
Liver, Testis, Brain,
3T3, R1E, Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

61491 ENSMUST00000202951 Tmem214-207 retained_intron Ribo-seq
2 sORFs_org_Mouse
167637 ENSMUST00000202008 Tmem214-204 retained_intron Ribo-seq
2 sORFs_org_Mouse
516483 ENSMUST00000202050 Tmem214-205 retained_intron Ribo-seq
weak 3 sORFs_org_Mouse
61967 150

GTG...

VAA...

GTG Intronic
sORF
Liver, Testis, 3T3,
R1E, Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

61491 ENSMUST00000202951 Tmem214-207 retained_intron Ribo-seq
2 sORFs_org_Mouse
516483 ENSMUST00000202050 Tmem214-205 retained_intron Ribo-seq
strong 3 sORFs_org_Mouse
62843 57

TTG...

LLL...

TTG Intronic
sORF
Liver, Testis, Brain,
R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

61491 ENSMUST00000202951 Tmem214-207 retained_intron Ribo-seq
2 sORFs_org_Mouse
167637 ENSMUST00000202008 Tmem214-204 retained_intron Ribo-seq
1 sORFs_org_Mouse
516483 ENSMUST00000202050 Tmem214-205 retained_intron Ribo-seq
1 sORFs_org_Mouse
65122 87

TTG...

LKV...

TTG Intronic
sORF
BMDC, Liver, Testis,
3T3, R1E, Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

61491 ENSMUST00000202951 Tmem214-207 retained_intron Ribo-seq
3 sORFs_org_Mouse
516483 ENSMUST00000202050 Tmem214-205 retained_intron Ribo-seq
3 sORFs_org_Mouse
1659851 69

CTG...

LCW...

CTG Alternative
InCDS
Overlapping
sORF
MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1085724 ENSMUST00000114716 Tmem214-201 protein_coding Ribo-seq
1 sORFs_org_Mouse
567240 39

GTG...

VTA...

GTG Intronic
sORF
3T3
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

516483 ENSMUST00000202050 Tmem214-205 retained_intron Ribo-seq
moderate 1 sORFs_org_Mouse
65504 33

CTG...

LYP...

CTG Intronic
sORF
3T3, R1E, Liver,
Testis
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

516483 ENSMUST00000202050 Tmem214-205 retained_intron Ribo-seq
2 sORFs_org_Mouse
61491 ENSMUST00000202951 Tmem214-207 retained_intron Ribo-seq
2 sORFs_org_Mouse
64766 72

CTG...

LTV...

CTG Intronic
sORF
Liver, Testis, 3T3,
R1E, Spleen_B_cell, MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

61491 ENSMUST00000202951 Tmem214-207 retained_intron Ribo-seq
2 sORFs_org_Mouse
516483 ENSMUST00000202050 Tmem214-205 retained_intron Ribo-seq
3 sORFs_org_Mouse
167637 ENSMUST00000202008 Tmem214-204 retained_intron Ribo-seq
1 sORFs_org_Mouse
566848 33

CTG...

LRP...

CTG Intronic
sORF
BMDC, 3T3
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

61491 ENSMUST00000202951 Tmem214-207 retained_intron Ribo-seq
weak 1 sORFs_org_Mouse
516483 ENSMUST00000202050 Tmem214-205 retained_intron Ribo-seq
weak 1 sORFs_org_Mouse
64742 63

CTG...

LKK...

CTG Intronic
sORF
Brain, 3T3, R1E,
Spleen_B_cell, BMDC, Liver,
Testis
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

167637 ENSMUST00000202008 Tmem214-204 retained_intron Ribo-seq
1 sORFs_org_Mouse
516483 ENSMUST00000202050 Tmem214-205 retained_intron Ribo-seq
3 sORFs_org_Mouse
61491 ENSMUST00000202951 Tmem214-207 retained_intron Ribo-seq
3 sORFs_org_Mouse
67307 276

CTG...

LDK...

CTG ncRNA
sORF
Brain, Liver, R1E,
Testis
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

67308 ENSMUST00000202774 Tmem214-206 processed_transcript Ribo-seq
4 sORFs_org_Mouse
572862 63

CTG...

LCW...

CTG Alternative
InCDS
Overlapping
sORF
3T3, MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

171654 ENSMUST00000201203 Tmem214-202 protein_coding Ribo-seq
1 sORFs_org_Mouse
1085724 ENSMUST00000114716 Tmem214-201 protein_coding Ribo-seq
1 sORFs_org_Mouse
1086899 120

CTG...

LWL...

CTG Alternative
InCDS
Overlapping
sORF
v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1085724 ENSMUST00000114716 Tmem214-201 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
905891 72

GTG...

VIA...

GTG InCDS
Overlapping
sORF
BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

171654 ENSMUST00000201203 Tmem214-202 protein_coding Ribo-seq
2 sORFs_org_Mouse
1467874 57

GTG...

VPP...

GTG Intronic
sORF
BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

61491 ENSMUST00000202951 Tmem214-207 retained_intron Ribo-seq
1 sORFs_org_Mouse
1019631 75

CTG...

LLP...

CTG Intronic
sORF
Liver, Brain, R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

61491 ENSMUST00000202951 Tmem214-207 retained_intron Ribo-seq
1 sORFs_org_Mouse
167637 ENSMUST00000202008 Tmem214-204 retained_intron Ribo-seq
1 sORFs_org_Mouse
516483 ENSMUST00000202050 Tmem214-205 retained_intron Ribo-seq
1 sORFs_org_Mouse
832675 63

GTG...

VGE...

GTG Alternative
InCDS
Overlapping
sORF
B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

171654 ENSMUST00000201203 Tmem214-202 protein_coding Ribo-seq
strong 1 sORFs_org_Mouse
64891 66

GTG...

VDP...

GTG Intronic
sORF
3T3, R1E, Spleen_B_cell,
Liver, Testis
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

516483 ENSMUST00000202050 Tmem214-205 retained_intron Ribo-seq
3 sORFs_org_Mouse
61491 ENSMUST00000202951 Tmem214-207 retained_intron Ribo-seq
2 sORFs_org_Mouse
1091094 171

CTG...

LET...

CTG InCDS
Overlapping
sORF
v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1085724 ENSMUST00000114716 Tmem214-201 protein_coding Ribo-seq
1 sORFs_org_Mouse
64736 45

GTG...

VCA...

GTG Intronic
sORF
BMDC, Liver, Testis,
3T3, R1E, Spleen_B_cell,
Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

61491 ENSMUST00000202951 Tmem214-207 retained_intron Ribo-seq
3 sORFs_org_Mouse
516483 ENSMUST00000202050 Tmem214-205 retained_intron Ribo-seq
3 sORFs_org_Mouse
167637 ENSMUST00000202008 Tmem214-204 retained_intron Ribo-seq
1 sORFs_org_Mouse
62852 90

GTG...

VWL...

GTG Intronic
sORF
Liver, Testis, 3T3,
R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

61491 ENSMUST00000202951 Tmem214-207 retained_intron Ribo-seq
2 sORFs_org_Mouse
516483 ENSMUST00000202050 Tmem214-205 retained_intron Ribo-seq
weak 2 sORFs_org_Mouse
62560 75

CTG...

LAS...

CTG Intronic
sORF
Liver, Testis, 3T3,
R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

61491 ENSMUST00000202951 Tmem214-207 retained_intron Ribo-seq
2 sORFs_org_Mouse
516483 ENSMUST00000202050 Tmem214-205 retained_intron Ribo-seq
strong 2 sORFs_org_Mouse
64482 84

CTG...

LKD...

CTG Intronic
sORF
3T3, R1E, Liver,
Testis
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

516483 ENSMUST00000202050 Tmem214-205 retained_intron Ribo-seq
weak 2 sORFs_org_Mouse
61491 ENSMUST00000202951 Tmem214-207 retained_intron Ribo-seq
2 sORFs_org_Mouse
1469198 171

TTG...

LLW...

TTG InCDS
Overlapping
sORF
BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

171654 ENSMUST00000201203 Tmem214-202 protein_coding Ribo-seq
1 sORFs_org_Mouse
832272 78

CTG...

LEQ...

CTG Alternative
InCDS
Overlapping
sORF
B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

171654 ENSMUST00000201203 Tmem214-202 protein_coding Ribo-seq
strong 1 sORFs_org_Mouse
1085723 72

CTG...

LDT...

CTG Alternative
InCDS
Overlapping
sORF
v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1085724 ENSMUST00000114716 Tmem214-201 protein_coding Ribo-seq
strong 1 sORFs_org_Mouse
62742 180

GTG...

VVQ...

GTG Intronic
sORF
BMDC, Testis
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

167637 ENSMUST00000202008 Tmem214-204 retained_intron Ribo-seq
1 sORFs_org_Mouse
61491 ENSMUST00000202951 Tmem214-207 retained_intron Ribo-seq
1 sORFs_org_Mouse
62273 165

CTG...

LQL...

CTG Intronic
sORF
Testis
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

61491 ENSMUST00000202951 Tmem214-207 retained_intron Ribo-seq
1 sORFs_org_Mouse
1469286 126

ATG...

MPY...

ATG InCDS
Overlapping
sORF
BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

171654 ENSMUST00000201203 Tmem214-202 protein_coding Ribo-seq
1 sORFs_org_Mouse
1469598 96

GTG...

VPP...

GTG InCDS
Overlapping
sORF
BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

171654 ENSMUST00000201203 Tmem214-202 protein_coding Ribo-seq
1 sORFs_org_Mouse
1469651 84

TTG...

LPA...

TTG InCDS
Overlapping
sORF
BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

171654 ENSMUST00000201203 Tmem214-202 protein_coding Ribo-seq
1 sORFs_org_Mouse
65160 120

GTG...

VTW...

GTG Intronic
sORF
3T3, R1E, Spleen_B_cell,
Brain, MEF, BMDC,
Liver, Testis
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

516483 ENSMUST00000202050 Tmem214-205 retained_intron Ribo-seq
moderate 3 sORFs_org_Mouse
167637 ENSMUST00000202008 Tmem214-204 retained_intron Ribo-seq
moderate 3 sORFs_org_Mouse
61491 ENSMUST00000202951 Tmem214-207 retained_intron Ribo-seq
moderate 3 sORFs_org_Mouse
524676 57

TTG...

LQP...

TTG InCDS
Overlapping
sORF
Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

171654 ENSMUST00000201203 Tmem214-202 protein_coding Ribo-seq
1 sORFs_org_Mouse

Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5