Gene NCBI:68275 | MetamORF

Gene

ID CARD

NCBI:68275

Aliases

5031405K23Rik
70kDa, AA589576, AW557552
ENSMUSG00000000751, MGI:1915525, NCBI:68275
OFF:Rpa1, RF-A, RP-A
Rpa, Rpa1

Chromosome

Transcripts

111 ORFs
5 known transcripts
162 ORF to known transcript associations

MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

ORFs

Display all the transcripts related to the entry.

8934

ENSMUST00000000767

Rpa1-201

protein_coding

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1287081	42	ATT ...	ISQ ...	Ribo-seq	ATT		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
314286	60	CTG ...	LTS ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, MEF, R1E
317065	177	GTG ...	VEG ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, R1E, Spleen_B_cell
1295304	132	AGG ...	RLN ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1284405	69	TTG ...	LDR ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF
314855	84	ATG ...	MPT ...	Ribo-seq	ATG		6	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, E14, Glioma, Liver, MEF, MESC, Spleen_B_cell
647702	33	CTG ...	LTS ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, Liver
1289120	48	ATC ...	ITY ...	Ribo-seq	ATC	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
453827	60	ATG ...	MGC ...	Ribo-seq	ATG	strong	3	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	E14, Glioma, Liver, MEF, MESC, Spleen_B_cell
1294932	99	AGG ...	RRT ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
646335	48	CTG ...	LLS ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
454970	195	GTG ...	VPQ ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, Spleen_B_cell
455321	276	CTG ...	LQR ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, Spleen_B_cell
316975	198	ATG ...	MVP ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, Spleen_B_cell
314754	189	CTG ...	LTT ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, R1E, Spleen_B_cell
1287005	84	CTG ...	LQR ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1288854	78	AGG ...	RPS ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
639479	45	TTG ...	LES ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, Liver
1290776	84	AGG ...	RRL ...	Ribo-seq	AGG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
447972	54	ATG ...	MAI ...	Ribo-seq	ATG	strong	1	sORFs_org_Mouse	InCDS Overlapping sORF	Spleen_B_cell
449706	81	ATG ...	MRL ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	E14, Glioma, Liver, MEF, MESC, Spleen_B_cell
450978	60	ATG ...	MPT ...	Ribo-seq	ATG		4	sORFs_org_Mouse	InCDS Overlapping sORF	E14, MEF, Spleen_B_cell
1285814	39	ATC ...	IQC ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
452659	75	GTG ...	VPV ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Spleen_B_cell
1295142	108	AGG ...	RRL ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
646893	147	ATG ...	MGS ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
454439	135	TTG ...	LGN ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, R1E, Spleen_B_cell
1295489	165	AGG ...	RPS ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1293195	63	ATC ...	ILT ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1294311	123	AAG ...	KRR ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
454622	213	CTG ...	LQL ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, Spleen_B_cell
317163	204	ATG ...	MVF ...	Ribo-seq	ATG		4	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	Glioma, Liver, MEF, MESC, R1E, Spleen_B_cell
1291029	45	TTG ...	LGI ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1287015	72	AGG ...	RFS ...	Ribo-seq	AGG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
451976	78	TTG ...	LKR ...	Ribo-seq	TTG		3	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, MEF, Spleen_B_cell
317611	162	CTG ...	LAC ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, Spleen_B_cell
649338	45	GTG ...	VDG ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
451554	63	GTG ...	VKS ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, E14, Spleen_B_cell
647106	30	TTG ...	LQI ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1293297	177	AGG ...	RSL ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
319339	135	ATG ...	MRL ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, R1E, Spleen_B_cell
1287498	90	AGG ...	RSL ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1294636	96	AGG ...	RFS ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1287535	141	CTG ...	LTT ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
645957	39	ATG ...	MSK ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
446795	72	TTG ...	LTS ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Spleen_B_cell
316230	171	CTG ...	LPE ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, Spleen_B_cell
455569	141	GTG ...	VGH ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, Spleen_B_cell
1287950	138	GTG ...	VGD ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
318380	171	CTG ...	LQR ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, R1E, Spleen_B_cell
1285065	30	ATT ...	IKD ...	Ribo-seq	ATT	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1288637	90	ACG ...	TSR ...	Ribo-seq	ACG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
654635	33	GTG ...	VAG ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, R1E
1286104	153	GTG ...	VFP ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1292325	48	ATT ...	IYV ...	Ribo-seq	ATT		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
450747	72	CTG ...	LSF ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	InCDS Overlapping sORF	E14, Spleen_B_cell
644920	54	CTG ...	LTS ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
1294079	108	AGG ...	RET ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
456964	237	ATG ...	MGV ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, Spleen_B_cell
315855	201	GTG ...	VFP ...	Ribo-seq	GTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, R1E, Spleen_B_cell
8933	39	CTG ...	LYV ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	Skin_tumor
448438	60	GTG ...	VKM ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	Spleen_B_cell
315373	156	TTG ...	LDR ...	Ribo-seq	TTG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14, MEF, R1E, Spleen_B_cell
1289107	33	AGG ...	RKA ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
1284693	129	GTG ...	VEG ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
455251	102	TTG ...	LKR ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF, Spleen_B_cell
318199	123	CTG ...	LRT ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, R1E
318759	180	TTG ...	LEN ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, Spleen_B_cell

22902

ENSMUST00000135770

Rpa1-203

processed_transcript

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1839584	135	GTG ...	VLL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	R1E
1842896	132	TTG ...	LLA ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	R1E
1287005	84	CTG ...	LQR ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	R1E
297738	204	GTG ...	VAA ...	Ribo-seq	GTG		4	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, Neutrophil, R1E
1037523	126	GTG ...	VTC ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	Neutrophil, R1E
1843029	42	GTG ...	VVP ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	R1E
1836983	234	CTG ...	LAT ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	R1E
1037760	108	TTG ...	LYR ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	Neutrophil
23953	135	GTG ...	VMA ...	Ribo-seq	GTG		5	sORFs_org_Mouse	ncRNA sORF	Brain, Liver, Testis
22901	258	GTG ...	VKS ...	Ribo-seq	GTG		11	sORFs_org_Mouse	ncRNA sORF	B_cell, BMDC, Brain, Liver, Neutrophil, NSC, R1E, Spleen_B_cell, Testis
1840636	222	CTG ...	LNT ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	R1E
450978	60	ATG ...	MPT ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	3T3
1838012	114	ATG ...	MAV ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	R1E
311886	123	GTG ...	VMA ...	Ribo-seq	GTG		3	sORFs_org_Mouse	ncRNA sORF	Brain, Neutrophil, R1E
23977	195	GTG ...	VVT ...	Ribo-seq	GTG		9	sORFs_org_Mouse	ncRNA sORF	BMDC, Brain, Liver, Neutrophil, NSC, R1E, Testis
292531	87	ATG ...	MEP ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	Brain
1840912	117	CTG ...	LMA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	R1E
311796	225	GTG ...	VYY ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	Brain, Neutrophil
19398	75	CTG ...	LLQ ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	Neutrophil, R1E
300271	129	GTG ...	VID ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	Brain, Neutrophil
308476	201	CTG ...	LKI ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	Brain, Neutrophil
304240	45	GTG ...	VNP ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
292359	195	GTG ...	VVF ...	Ribo-seq	GTG		3	sORFs_org_Mouse	ncRNA sORF	Brain, Neutrophil, R1E
20485	72	CTG ...	LQP ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	Neutrophil, R1E
1840034	39	GTG ...	VPI ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	R1E
23759	192	GTG ...	VTT ...	Ribo-seq	GTG		9	sORFs_org_Mouse	ncRNA sORF	BMDC, Brain, Liver, Neutrophil, NSC, R1E, Testis
23576	216	TTG ...	LMD ...	Ribo-seq	TTG		10	sORFs_org_Mouse	ncRNA sORF	B_cell, BMDC, Brain, Liver, Neutrophil, NSC, R1E, Testis
23002	180	CTG ...	LWG ...	Ribo-seq	CTG		6	sORFs_org_Mouse	ncRNA sORF	Brain, Liver, Neutrophil, Testis
1838222	120	TTG ...	LLM ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	R1E
419624	48	ATA ...	IKP ...	Ribo-seq	ATA		1	sORFs_org_Mouse	ncRNA sORF	C2C12
311645	192	GTG ...	VFL ...	Ribo-seq	GTG		3	sORFs_org_Mouse	ncRNA sORF	Brain, Neutrophil, R1E

314287

ENSMUST00000092907

Rpa1-202

protein_coding

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1595593	120	CTG ...	LPG ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
646893	147	ATG ...	MGS ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
314286	60	CTG ...	LTS ...	Ribo-seq	CTG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, MEF, Neutrophil, v6-5
317163	204	ATG ...	MVF ...	Ribo-seq	ATG		7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, MEF, Neutrophil, v6-5
643487	36	GTG ...	VTG ...	Ribo-seq	GTG	moderate	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, MEF, v6-5
316975	198	ATG ...	MVP ...	Ribo-seq	ATG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, MEF, v6-5
1287005	84	CTG ...	LQR ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
449706	81	ATG ...	MRL ...	Ribo-seq	ATG	moderate	4	sORFs_org_Mouse	InCDS Overlapping sORF	E14, MEF, v6-5
451976	78	TTG ...	LKR ...	Ribo-seq	TTG		5	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, E14, MEF, v6-5
646335	48	CTG ...	LLS ...	Ribo-seq	CTG	weak	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, MEF, NSC, v6-5
452659	75	GTG ...	VPV ...	Ribo-seq	GTG	weak	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, MEF, v6-5
1287535	141	CTG ...	LTT ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
455321	276	CTG ...	LQR ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, MEF, v6-5
1284693	129	GTG ...	VEG ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
314754	189	CTG ...	LTT ...	Ribo-seq	CTG		7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, MEF, Neutrophil, v6-5
649338	45	GTG ...	VDG ...	Ribo-seq	GTG	moderate	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, MEF, v6-5
454622	213	CTG ...	LQL ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, MEF, v6-5
456964	237	ATG ...	MGV ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, v6-5
1123827	54	GTG ...	VDY ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	InCDS Overlapping sORF	E14, MEF, v6-5
1126434	69	GTG ...	VSP ...	Ribo-seq	GTG	weak	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, v6-5
641656	81	CTG ...	LWQ ...	Ribo-seq	CTG	moderate	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, MEF, v6-5
652140	45	TTG ...	LCP ...	Ribo-seq	TTG	weak	5	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, E14, MEF, NSC, v6-5
639479	45	TTG ...	LES ...	Ribo-seq	TTG	moderate	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, MEF, NSC, v6-5
319339	135	ATG ...	MRL ...	Ribo-seq	ATG		7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, MEF, Neutrophil, v6-5
318759	180	TTG ...	LEN ...	Ribo-seq	TTG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, MEF, v6-5
317065	177	GTG ...	VEG ...	Ribo-seq	GTG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, MEF, v6-5
1291029	45	TTG ...	LGI ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
450978	60	ATG ...	MPT ...	Ribo-seq	ATG		4	sORFs_org_Mouse	InCDS Overlapping sORF	E14, MEF, v6-5
453827	60	ATG ...	MGC ...	Ribo-seq	ATG	strong	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, MEF, NSC, v6-5
316230	171	CTG ...	LPE ...	Ribo-seq	CTG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, MEF, v6-5
315855	201	GTG ...	VFP ...	Ribo-seq	GTG		7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, MEF, Neutrophil, v6-5
315373	156	TTG ...	LDR ...	Ribo-seq	TTG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, MEF, v6-5
454439	135	TTG ...	LGN ...	Ribo-seq	TTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, MEF, v6-5
8933	39	CTG ...	LYV ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	InCDS Overlapping sORF	E14, MEF, v6-5
455569	141	GTG ...	VGH ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, MEF, v6-5
655759	147	TTG ...	LIS ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, MEF
647702	33	CTG ...	LTS ...	Ribo-seq	CTG	moderate	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, MEF, NSC, v6-5
314855	84	ATG ...	MPT ...	Ribo-seq	ATG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, MEF, v6-5
450747	72	CTG ...	LSF ...	Ribo-seq	CTG	weak	5	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, E14, MEF, v6-5
448438	60	GTG ...	VKM ...	Ribo-seq	GTG	weak	4	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, E14, MEF, v6-5
454970	195	GTG ...	VPQ ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, MEF, v6-5
317611	162	CTG ...	LAC ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, MEF, v6-5
1284405	69	TTG ...	LDR ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
318199	123	CTG ...	LRT ...	Ribo-seq	CTG		7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, MEF, Neutrophil, v6-5
647106	30	TTG ...	LQI ...	Ribo-seq	TTG	moderate	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, MEF, v6-5
318380	171	CTG ...	LQR ...	Ribo-seq	CTG		7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, MEF, Neutrophil, v6-5
644920	54	CTG ...	LTS ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, MEF
645957	39	ATG ...	MSK ...	Ribo-seq	ATG	weak	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, MEF, NSC, v6-5
447972	54	ATG ...	MAI ...	Ribo-seq	ATG	strong	4	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, E14, MEF, v6-5
451554	63	GTG ...	VKS ...	Ribo-seq	GTG	moderate	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, MEF, NSC, v6-5
658813	162	CTG ...	LNW ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, MEF
1287950	138	GTG ...	VGD ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
644318	39	GTG ...	VSA ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, MEF, v6-5
455251	102	TTG ...	LKR ...	Ribo-seq	TTG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, E14, MEF, v6-5
654635	33	GTG ...	VAG ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, Neutrophil, v6-5
639994	45	GTG ...	VRS ...	Ribo-seq	GTG	moderate	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, MEF, NSC, v6-5
446795	72	TTG ...	LTS ...	Ribo-seq	TTG	weak	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, MEF, v6-5

3137719

UNKNOWN_TRANSCRIPT

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
317163	204	ATG ...	MVF ...	Predicted	ATG		1	Samandi2017	sORF

19399

ENSMUST00000154894

Rpa1-205

retained_intron

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
19398	75	CTG ...	LLQ ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Testis
20485	72	CTG ...	LQP ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	Testis
930641	69	ATA ...	IQQ ...	Ribo-seq	ATA		1	sORFs_org_Mouse	Intronic sORF	BMDC
91221	147	TTG ...	LMD ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	Testis

19460

ENSMUST00000149365

Rpa1-204

processed_transcript

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

19459

CTG ...

LSE ...

Ribo-seq

CTG

sORFs_org_Mouse

Neutrophil, Testis

20475

GTG ...

VGH ...

Ribo-seq

GTG

sORFs_org_Mouse

BMDC, Brain, Testis

ORFs

111 ORFs
5 known transcripts
162 ORF to known transcript associations

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF Length

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Start codon

The start codon sequence of the ORF.

ORF annotations

A comma-separated list of all the annotations computed by our algorithm for the ORF. This list includes the annotations computed for the ORF for all transcripts. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of all the cell types in which the ORF has already been identified.

Transcripts

Display all the transcripts related to the entry.

1287081

ATT...

ISQ...

ATT

InCDS
Overlapping
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
8934	ENSMUST00000000767	Rpa1-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse

314286

CTG...

LTS...

CTG

Alternative
InCDS
Overlapping
sORF

3T3, MEF, R1E,
Brain, E14, Neutrophil,
v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
8934	ENSMUST00000000767	Rpa1-201	protein_coding	Ribo-seq		4	sORFs_org_Mouse
314287	ENSMUST00000092907	Rpa1-202	protein_coding	Ribo-seq		6	sORFs_org_Mouse

317065

177

GTG...

VEG...

GTG

Alternative
InCDS
Overlapping
sORF

MEF, R1E, Spleen_B_cell,
3T3, Brain, E14,
v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
8934	ENSMUST00000000767	Rpa1-201	protein_coding	Ribo-seq		3	sORFs_org_Mouse
314287	ENSMUST00000092907	Rpa1-202	protein_coding	Ribo-seq		6	sORFs_org_Mouse

1839584

135

GTG...

VLL...

GTG

ncRNA
sORF

R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
22902	ENSMUST00000135770	Rpa1-203	processed_transcript	Ribo-seq		1	sORFs_org_Mouse

1842896

132

TTG...

LLA...

TTG

ncRNA
sORF

R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
22902	ENSMUST00000135770	Rpa1-203	processed_transcript	Ribo-seq		1	sORFs_org_Mouse

1287005

CTG...

LQR...

CTG

ncRNA
sORF
Alternative
InCDS
Overlapping

R1E, MEF, E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
22902	ENSMUST00000135770	Rpa1-203	processed_transcript	Ribo-seq		1	sORFs_org_Mouse
314287	ENSMUST00000092907	Rpa1-202	protein_coding	Ribo-seq		2	sORFs_org_Mouse
8934	ENSMUST00000000767	Rpa1-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse

297738

204

GTG...

VAA...

GTG

ncRNA
sORF

3T3, Brain, Neutrophil,
R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
22902	ENSMUST00000135770	Rpa1-203	processed_transcript	Ribo-seq		4	sORFs_org_Mouse

1037523

126

GTG...

VTC...

GTG

ncRNA
sORF

Neutrophil, R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
22902	ENSMUST00000135770	Rpa1-203	processed_transcript	Ribo-seq		2	sORFs_org_Mouse

1295304

132

AGG...

RLN...

AGG

Alternative
InCDS
Overlapping
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
8934	ENSMUST00000000767	Rpa1-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse

1843029

GTG...

VVP...

GTG

ncRNA
sORF

R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
22902	ENSMUST00000135770	Rpa1-203	processed_transcript	Ribo-seq		1	sORFs_org_Mouse

1595593

120

CTG...

LPG...

CTG

InCDS
Overlapping
sORF

MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
314287	ENSMUST00000092907	Rpa1-202	protein_coding	Ribo-seq		1	sORFs_org_Mouse

1284405

TTG...

LDR...

TTG

Alternative
InCDS
Overlapping
sORF

E14, MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
8934	ENSMUST00000000767	Rpa1-201	protein_coding	Ribo-seq		2	sORFs_org_Mouse
314287	ENSMUST00000092907	Rpa1-202	protein_coding	Ribo-seq		2	sORFs_org_Mouse

646893

147

ATG...

MGS...

ATG

Alternative
InCDS
Overlapping
sORF

3T3, E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
314287	ENSMUST00000092907	Rpa1-202	protein_coding	Ribo-seq		1	sORFs_org_Mouse
8934	ENSMUST00000000767	Rpa1-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse

314855

ATG...

MPT...

ATG

Alternative
InCDS
Overlapping
sORF

3T3, E14, Glioma,
Liver, MEF, MESC,
Spleen_B_cell, Brain, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
8934	ENSMUST00000000767	Rpa1-201	protein_coding	Ribo-seq		6	sORFs_org_Mouse Johnstone2016
314287	ENSMUST00000092907	Rpa1-202	protein_coding	Ribo-seq		5	sORFs_org_Mouse

317163

204

ATG...

MVF...

ATG

Alternative
InCDS
Overlapping
sORF

3T3, Brain, E14,
MEF, Neutrophil, v6-5,
Glioma, Liver,
MESC, R1E, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
314287	ENSMUST00000092907	Rpa1-202	protein_coding	Ribo-seq		7	sORFs_org_Mouse
3137719	UNKNOWN_TRANSCRIPT			Predicted		1	Samandi2017
8934	ENSMUST00000000767	Rpa1-201	protein_coding	Ribo-seq		4	sORFs_org_Mouse Johnstone2016

1836983

234

CTG...

LAT...

CTG

ncRNA
sORF

R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
22902	ENSMUST00000135770	Rpa1-203	processed_transcript	Ribo-seq		1	sORFs_org_Mouse

647702

CTG...

LTS...

CTG

Alternative
InCDS
Overlapping
sORF

E14, Liver, 3T3,
MEF, NSC, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
8934	ENSMUST00000000767	Rpa1-201	protein_coding	Ribo-seq	moderate	2	sORFs_org_Mouse
314287	ENSMUST00000092907	Rpa1-202	protein_coding	Ribo-seq	moderate	5	sORFs_org_Mouse

1289120

ATC...

ITY...

ATC

InCDS
Overlapping
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
8934	ENSMUST00000000767	Rpa1-201	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse

643487

GTG...

VTG...

GTG

Alternative
InCDS
Overlapping
sORF

3T3, E14, MEF,
v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
314287	ENSMUST00000092907	Rpa1-202	protein_coding	Ribo-seq	moderate	5	sORFs_org_Mouse

453827

ATG...

MGC...

ATG

Alternative
InCDS
Overlapping
sORF

E14, Glioma, Liver,
MEF, MESC, Spleen_B_cell,
3T3, NSC, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
8934	ENSMUST00000000767	Rpa1-201	protein_coding	Ribo-seq	strong	3	sORFs_org_Mouse Johnstone2016
314287	ENSMUST00000092907	Rpa1-202	protein_coding	Ribo-seq	strong	6	sORFs_org_Mouse

1294932

AGG...

RRT...

AGG

Alternative
InCDS
Overlapping
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
8934	ENSMUST00000000767	Rpa1-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse

316975

198

ATG...

MVP...

ATG

Alternative
InCDS
Overlapping
sORF

3T3, Brain, E14,
MEF, v6-5, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
314287	ENSMUST00000092907	Rpa1-202	protein_coding	Ribo-seq		5	sORFs_org_Mouse
8934	ENSMUST00000000767	Rpa1-201	protein_coding	Ribo-seq		2	sORFs_org_Mouse

646335

CTG...

LLS...

CTG

Alternative
InCDS
Overlapping
sORF

E14, 3T3, MEF,
NSC, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
8934	ENSMUST00000000767	Rpa1-201	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse
314287	ENSMUST00000092907	Rpa1-202	protein_coding	Ribo-seq	weak	6	sORFs_org_Mouse

1037760

108

TTG...

LYR...

TTG

ncRNA
sORF

Neutrophil

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
22902	ENSMUST00000135770	Rpa1-203	processed_transcript	Ribo-seq		1	sORFs_org_Mouse

454970

195

GTG...

VPQ...

GTG

Alternative
InCDS
Overlapping
sORF

Brain, E14, Spleen_B_cell,
3T3, MEF, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
8934	ENSMUST00000000767	Rpa1-201	protein_coding	Ribo-seq		3	sORFs_org_Mouse
314287	ENSMUST00000092907	Rpa1-202	protein_coding	Ribo-seq		4	sORFs_org_Mouse

455321

276

CTG...

LQR...

CTG

Alternative
InCDS
Overlapping
sORF

Brain, Spleen_B_cell, 3T3,
E14, MEF, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
8934	ENSMUST00000000767	Rpa1-201	protein_coding	Ribo-seq		2	sORFs_org_Mouse
314287	ENSMUST00000092907	Rpa1-202	protein_coding	Ribo-seq		4	sORFs_org_Mouse

23953

135

GTG...

VMA...

GTG

ncRNA
sORF

Brain, Liver, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
22902	ENSMUST00000135770	Rpa1-203	processed_transcript	Ribo-seq		5	sORFs_org_Mouse

22901

258

GTG...

VKS...

GTG

ncRNA
sORF

B_cell, BMDC, Brain,
Liver, Neutrophil, NSC,
R1E, Spleen_B_cell, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
22902	ENSMUST00000135770	Rpa1-203	processed_transcript	Ribo-seq		11	sORFs_org_Mouse

449706

ATG...

MRL...

ATG

InCDS
Overlapping
sORF

E14, MEF, v6-5,
Glioma, Liver, MESC,
Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
314287	ENSMUST00000092907	Rpa1-202	protein_coding	Ribo-seq	moderate	4	sORFs_org_Mouse
8934	ENSMUST00000000767	Rpa1-201	protein_coding	Ribo-seq	moderate	3	sORFs_org_Mouse Johnstone2016

451976

TTG...

LKR...

TTG

InCDS
Overlapping
sORF

3T3, E14, MEF,
v6-5, Brain, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
314287	ENSMUST00000092907	Rpa1-202	protein_coding	Ribo-seq		5	sORFs_org_Mouse
8934	ENSMUST00000000767	Rpa1-201	protein_coding	Ribo-seq		3	sORFs_org_Mouse

1840636

222

CTG...

LNT...

CTG

ncRNA
sORF

R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
22902	ENSMUST00000135770	Rpa1-203	processed_transcript	Ribo-seq		1	sORFs_org_Mouse

314754

189

CTG...

LTT...

CTG

Alternative
InCDS
Overlapping
sORF

MEF, R1E, Spleen_B_cell,
3T3, Brain, E14,
Neutrophil, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
8934	ENSMUST00000000767	Rpa1-201	protein_coding	Ribo-seq		4	sORFs_org_Mouse
314287	ENSMUST00000092907	Rpa1-202	protein_coding	Ribo-seq		7	sORFs_org_Mouse

452659

GTG...

VPV...

GTG

Alternative
InCDS
Overlapping
sORF

3T3, E14, MEF,
v6-5, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
314287	ENSMUST00000092907	Rpa1-202	protein_coding	Ribo-seq	weak	5	sORFs_org_Mouse
8934	ENSMUST00000000767	Rpa1-201	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse

1288854

AGG...

RPS...

AGG

Alternative
InCDS
Overlapping
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
8934	ENSMUST00000000767	Rpa1-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse

1287535

141

CTG...

LTT...

CTG

Alternative
InCDS
Overlapping
sORF

MEF, E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
314287	ENSMUST00000092907	Rpa1-202	protein_coding	Ribo-seq		1	sORFs_org_Mouse
8934	ENSMUST00000000767	Rpa1-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse

450978

ATG...

MPT...

ATG

ncRNA
sORF
InCDS
Overlapping

3T3, E14, MEF,
Spleen_B_cell, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
22902	ENSMUST00000135770	Rpa1-203	processed_transcript	Ribo-seq		1	sORFs_org_Mouse
8934	ENSMUST00000000767	Rpa1-201	protein_coding	Ribo-seq		4	sORFs_org_Mouse
314287	ENSMUST00000092907	Rpa1-202	protein_coding	Ribo-seq		4	sORFs_org_Mouse

1838012

114

ATG...

MAV...

ATG

ncRNA
sORF

R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
22902	ENSMUST00000135770	Rpa1-203	processed_transcript	Ribo-seq		1	sORFs_org_Mouse

639479

TTG...

LES...

TTG

Alternative
InCDS
Overlapping
sORF

Brain, Liver, 3T3,
E14, MEF, NSC,
v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
8934	ENSMUST00000000767	Rpa1-201	protein_coding	Ribo-seq	moderate	2	sORFs_org_Mouse
314287	ENSMUST00000092907	Rpa1-202	protein_coding	Ribo-seq	moderate	6	sORFs_org_Mouse

1290776

AGG...

RRL...

AGG

InCDS
Overlapping
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
8934	ENSMUST00000000767	Rpa1-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse

311886

123

GTG...

VMA...

GTG

ncRNA
sORF

Brain, Neutrophil, R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
22902	ENSMUST00000135770	Rpa1-203	processed_transcript	Ribo-seq		3	sORFs_org_Mouse

1284693

129

GTG...

VEG...

GTG

Alternative
InCDS
Overlapping
sORF

MEF, E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
314287	ENSMUST00000092907	Rpa1-202	protein_coding	Ribo-seq		1	sORFs_org_Mouse
8934	ENSMUST00000000767	Rpa1-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse

23977

195

GTG...

VVT...

GTG

ncRNA
sORF

BMDC, Brain, Liver,
Neutrophil, NSC, R1E,
Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
22902	ENSMUST00000135770	Rpa1-203	processed_transcript	Ribo-seq		9	sORFs_org_Mouse

447972

ATG...

MAI...

ATG

InCDS
Overlapping
sORF

Spleen_B_cell, 3T3, E14,
MEF, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
8934	ENSMUST00000000767	Rpa1-201	protein_coding	Ribo-seq	strong	1	sORFs_org_Mouse
314287	ENSMUST00000092907	Rpa1-202	protein_coding	Ribo-seq	strong	4	sORFs_org_Mouse

649338

GTG...

VDG...

GTG

Alternative
InCDS
Overlapping
sORF

3T3, E14, MEF,
v6-5, Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
314287	ENSMUST00000092907	Rpa1-202	protein_coding	Ribo-seq	moderate	4	sORFs_org_Mouse
8934	ENSMUST00000000767	Rpa1-201	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse

19398

CTG...

LLQ...

CTG

Intronic
sORF
ncRNA

Testis, Neutrophil, R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
19399	ENSMUST00000154894	Rpa1-205	retained_intron	Ribo-seq	moderate	1	sORFs_org_Mouse
22902	ENSMUST00000135770	Rpa1-203	processed_transcript	Ribo-seq		2	sORFs_org_Mouse

454622

213

CTG...

LQL...

CTG

Alternative
InCDS
Overlapping
sORF

3T3, E14, MEF,
v6-5, Brain, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
314287	ENSMUST00000092907	Rpa1-202	protein_coding	Ribo-seq		4	sORFs_org_Mouse
8934	ENSMUST00000000767	Rpa1-201	protein_coding	Ribo-seq		2	sORFs_org_Mouse

1285814

ATC...

IQC...

ATC

Alternative
InCDS
Overlapping
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
8934	ENSMUST00000000767	Rpa1-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse

292531

ATG...

MEP...

ATG

ncRNA
sORF

Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
22902	ENSMUST00000135770	Rpa1-203	processed_transcript	Ribo-seq		1	sORFs_org_Mouse

1295142

108

AGG...

RRL...

AGG

Alternative
InCDS
Overlapping
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
8934	ENSMUST00000000767	Rpa1-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse

456964

237

ATG...

MGV...

ATG

Alternative
InCDS
Overlapping
sORF

E14, MEF, v6-5,
3T3, Brain, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
314287	ENSMUST00000092907	Rpa1-202	protein_coding	Ribo-seq		3	sORFs_org_Mouse
8934	ENSMUST00000000767	Rpa1-201	protein_coding	Ribo-seq		3	sORFs_org_Mouse

1123827

GTG...

VDY...

GTG

InCDS
Overlapping
sORF

E14, MEF, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
314287	ENSMUST00000092907	Rpa1-202	protein_coding	Ribo-seq	moderate	3	sORFs_org_Mouse

1840912

117

CTG...

LMA...

CTG

ncRNA
sORF

R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
22902	ENSMUST00000135770	Rpa1-203	processed_transcript	Ribo-seq		1	sORFs_org_Mouse

454439

135

TTG...

LGN...

TTG

Alternative
InCDS
Overlapping
sORF

MEF, R1E, Spleen_B_cell,
3T3, E14, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
8934	ENSMUST00000000767	Rpa1-201	protein_coding	Ribo-seq		4	sORFs_org_Mouse
314287	ENSMUST00000092907	Rpa1-202	protein_coding	Ribo-seq		5	sORFs_org_Mouse

1295489

165

AGG...

RPS...

AGG

Alternative
InCDS
Overlapping
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
8934	ENSMUST00000000767	Rpa1-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse

1293195

ATC...

ILT...

ATC

Alternative
InCDS
Overlapping
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
8934	ENSMUST00000000767	Rpa1-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse

1294311

123

AAG...

KRR...

AAG

Alternative
InCDS
Overlapping
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
8934	ENSMUST00000000767	Rpa1-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse

1126434

GTG...

VSP...

GTG

Alternative
InCDS
Overlapping
sORF

E14, MEF, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
314287	ENSMUST00000092907	Rpa1-202	protein_coding	Ribo-seq	weak	4	sORFs_org_Mouse

641656

CTG...

LWQ...

CTG

Alternative
InCDS
Overlapping
sORF

3T3, E14, MEF,
v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
314287	ENSMUST00000092907	Rpa1-202	protein_coding	Ribo-seq	moderate	5	sORFs_org_Mouse

652140

TTG...

LCP...

TTG

InCDS
Overlapping
sORF

3T3, E14, MEF,
NSC, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
314287	ENSMUST00000092907	Rpa1-202	protein_coding	Ribo-seq	weak	5	sORFs_org_Mouse

311796

225

GTG...

VYY...

GTG

ncRNA
sORF

Brain, Neutrophil

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
22902	ENSMUST00000135770	Rpa1-203	processed_transcript	Ribo-seq		2	sORFs_org_Mouse

300271

129

GTG...

VID...

GTG

ncRNA
sORF

Brain, Neutrophil

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
22902	ENSMUST00000135770	Rpa1-203	processed_transcript	Ribo-seq		2	sORFs_org_Mouse

1291029

TTG...

LGI...

TTG

Alternative
InCDS
Overlapping
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
8934	ENSMUST00000000767	Rpa1-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse
314287	ENSMUST00000092907	Rpa1-202	protein_coding	Ribo-seq		1	sORFs_org_Mouse

1287015

AGG...

RFS...

AGG

InCDS
Overlapping
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
8934	ENSMUST00000000767	Rpa1-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse

319339

135

ATG...

MRL...

ATG

Alternative
InCDS
Overlapping
sORF

3T3, Brain, E14,
MEF, Neutrophil, v6-5,
R1E, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
314287	ENSMUST00000092907	Rpa1-202	protein_coding	Ribo-seq		7	sORFs_org_Mouse
8934	ENSMUST00000000767	Rpa1-201	protein_coding	Ribo-seq		3	sORFs_org_Mouse

318759

180

TTG...

LEN...

TTG

Alternative
InCDS
Overlapping
sORF

3T3, Brain, E14,
MEF, v6-5, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
314287	ENSMUST00000092907	Rpa1-202	protein_coding	Ribo-seq		6	sORFs_org_Mouse
8934	ENSMUST00000000767	Rpa1-201	protein_coding	Ribo-seq		2	sORFs_org_Mouse

308476

201

CTG...

LKI...

CTG

ncRNA
sORF

Brain, Neutrophil

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
22902	ENSMUST00000135770	Rpa1-203	processed_transcript	Ribo-seq		2	sORFs_org_Mouse

317611

162

CTG...

LAC...

CTG

Alternative
InCDS
Overlapping
sORF

Brain, Spleen_B_cell, 3T3,
E14, MEF, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
8934	ENSMUST00000000767	Rpa1-201	protein_coding	Ribo-seq		2	sORFs_org_Mouse
314287	ENSMUST00000092907	Rpa1-202	protein_coding	Ribo-seq		5	sORFs_org_Mouse

304240

GTG...

VNP...

GTG

ncRNA
sORF

Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
22902	ENSMUST00000135770	Rpa1-203	processed_transcript	Ribo-seq		1	sORFs_org_Mouse

451554

GTG...

VKS...

GTG

Alternative
InCDS
Overlapping
sORF

B_cell, E14, Spleen_B_cell,
3T3, MEF, NSC,
v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
8934	ENSMUST00000000767	Rpa1-201	protein_coding	Ribo-seq	moderate	3	sORFs_org_Mouse
314287	ENSMUST00000092907	Rpa1-202	protein_coding	Ribo-seq	moderate	6	sORFs_org_Mouse

316230

171

CTG...

LPE...

CTG

Alternative
InCDS
Overlapping
sORF

3T3, Brain, E14,
MEF, v6-5, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
314287	ENSMUST00000092907	Rpa1-202	protein_coding	Ribo-seq		6	sORFs_org_Mouse
8934	ENSMUST00000000767	Rpa1-201	protein_coding	Ribo-seq		3	sORFs_org_Mouse

20485

CTG...

LQP...

CTG

Intronic
sORF
ncRNA

Testis, Neutrophil, R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
19399	ENSMUST00000154894	Rpa1-205	retained_intron	Ribo-seq	weak	1	sORFs_org_Mouse
22902	ENSMUST00000135770	Rpa1-203	processed_transcript	Ribo-seq		2	sORFs_org_Mouse

315855

201

GTG...

VFP...

GTG

Alternative
InCDS
Overlapping
sORF

3T3, Brain, E14,
MEF, Neutrophil, v6-5,
R1E, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
314287	ENSMUST00000092907	Rpa1-202	protein_coding	Ribo-seq		7	sORFs_org_Mouse
8934	ENSMUST00000000767	Rpa1-201	protein_coding	Ribo-seq		5	sORFs_org_Mouse

292359

195

GTG...

VVF...

GTG

ncRNA
sORF

Brain, Neutrophil, R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
22902	ENSMUST00000135770	Rpa1-203	processed_transcript	Ribo-seq		3	sORFs_org_Mouse

315373

156

TTG...

LDR...

TTG

Alternative
InCDS
Overlapping
sORF

3T3, Brain, E14,
MEF, v6-5, BMDC,
R1E, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
314287	ENSMUST00000092907	Rpa1-202	protein_coding	Ribo-seq		6	sORFs_org_Mouse
8934	ENSMUST00000000767	Rpa1-201	protein_coding	Ribo-seq		6	sORFs_org_Mouse

647106

TTG...

LQI...

TTG

Alternative
InCDS
Overlapping
sORF

E14, 3T3, MEF,
v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
8934	ENSMUST00000000767	Rpa1-201	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse
314287	ENSMUST00000092907	Rpa1-202	protein_coding	Ribo-seq	moderate	5	sORFs_org_Mouse

1293297

177

AGG...

RSL...

AGG

Alternative
InCDS
Overlapping
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
8934	ENSMUST00000000767	Rpa1-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse

8933

CTG...

LYV...

CTG

InCDS
Overlapping
sORF

E14, MEF, v6-5,
Skin_tumor

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
314287	ENSMUST00000092907	Rpa1-202	protein_coding	Ribo-seq	moderate	4	sORFs_org_Mouse
8934	ENSMUST00000000767	Rpa1-201	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse

455569

141

GTG...

VGH...

GTG

Alternative
InCDS
Overlapping
sORF

3T3, E14, MEF,
v6-5, Brain, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
314287	ENSMUST00000092907	Rpa1-202	protein_coding	Ribo-seq		4	sORFs_org_Mouse
8934	ENSMUST00000000767	Rpa1-201	protein_coding	Ribo-seq		2	sORFs_org_Mouse

655759

147

TTG...

LIS...

TTG

Alternative
InCDS
Overlapping
sORF

3T3, E14, MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
314287	ENSMUST00000092907	Rpa1-202	protein_coding	Ribo-seq		3	sORFs_org_Mouse

1840034

GTG...

VPI...

GTG

ncRNA
sORF

R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
22902	ENSMUST00000135770	Rpa1-203	processed_transcript	Ribo-seq		1	sORFs_org_Mouse

450747

CTG...

LSF...

CTG

InCDS
Overlapping
sORF

3T3, E14, MEF,
v6-5, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
314287	ENSMUST00000092907	Rpa1-202	protein_coding	Ribo-seq	weak	5	sORFs_org_Mouse
8934	ENSMUST00000000767	Rpa1-201	protein_coding	Ribo-seq	weak	2	sORFs_org_Mouse

448438

GTG...

VKM...

GTG

InCDS
Overlapping
sORF

3T3, E14, MEF,
v6-5, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
314287	ENSMUST00000092907	Rpa1-202	protein_coding	Ribo-seq	weak	4	sORFs_org_Mouse
8934	ENSMUST00000000767	Rpa1-201	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse

1287498

AGG...

RSL...

AGG

Alternative
InCDS
Overlapping
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
8934	ENSMUST00000000767	Rpa1-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse

1294636

AGG...

RFS...

AGG

Alternative
InCDS
Overlapping
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
8934	ENSMUST00000000767	Rpa1-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse

930641

ATA...

IQQ...

ATA

Intronic
sORF

BMDC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
19399	ENSMUST00000154894	Rpa1-205	retained_intron	Ribo-seq		1	sORFs_org_Mouse

23759

192

GTG...

VTT...

GTG

ncRNA
sORF

BMDC, Brain, Liver,
Neutrophil, NSC, R1E,
Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
22902	ENSMUST00000135770	Rpa1-203	processed_transcript	Ribo-seq		9	sORFs_org_Mouse

23576

216

TTG...

LMD...

TTG

ncRNA
sORF

B_cell, BMDC, Brain,
Liver, Neutrophil, NSC,
R1E, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
22902	ENSMUST00000135770	Rpa1-203	processed_transcript	Ribo-seq		10	sORFs_org_Mouse

645957

ATG...

MSK...

ATG

Alternative
InCDS
Overlapping
sORF

E14, 3T3, MEF,
NSC, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
8934	ENSMUST00000000767	Rpa1-201	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse
314287	ENSMUST00000092907	Rpa1-202	protein_coding	Ribo-seq	weak	6	sORFs_org_Mouse

446795

TTG...

LTS...

TTG

Alternative
InCDS
Overlapping
sORF

Spleen_B_cell, 3T3, E14,
MEF, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
8934	ENSMUST00000000767	Rpa1-201	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse
314287	ENSMUST00000092907	Rpa1-202	protein_coding	Ribo-seq	weak	5	sORFs_org_Mouse

23002

180

CTG...

LWG...

CTG

ncRNA
sORF

Brain, Liver, Neutrophil,
Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
22902	ENSMUST00000135770	Rpa1-203	processed_transcript	Ribo-seq		6	sORFs_org_Mouse

318199

123

CTG...

LRT...

CTG

Alternative
InCDS
Overlapping
sORF

3T3, Brain, E14,
MEF, Neutrophil, v6-5,
R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
314287	ENSMUST00000092907	Rpa1-202	protein_coding	Ribo-seq		7	sORFs_org_Mouse
8934	ENSMUST00000000767	Rpa1-201	protein_coding	Ribo-seq		3	sORFs_org_Mouse

1287950

138

GTG...

VGD...

GTG

Alternative
InCDS
Overlapping
sORF

E14, MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
8934	ENSMUST00000000767	Rpa1-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse
314287	ENSMUST00000092907	Rpa1-202	protein_coding	Ribo-seq		1	sORFs_org_Mouse

318380

171

CTG...

LQR...

CTG

Alternative
InCDS
Overlapping
sORF

E14, MEF, R1E,
Spleen_B_cell, 3T3, Brain,
Neutrophil, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
8934	ENSMUST00000000767	Rpa1-201	protein_coding	Ribo-seq		5	sORFs_org_Mouse
314287	ENSMUST00000092907	Rpa1-202	protein_coding	Ribo-seq		7	sORFs_org_Mouse

1838222

120

TTG...

LLM...

TTG

ncRNA
sORF

R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
22902	ENSMUST00000135770	Rpa1-203	processed_transcript	Ribo-seq		1	sORFs_org_Mouse

644920

CTG...

LTS...

CTG

Alternative
InCDS
Overlapping
sORF

3T3, E14, MEF,
Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
314287	ENSMUST00000092907	Rpa1-202	protein_coding	Ribo-seq	weak	3	sORFs_org_Mouse
8934	ENSMUST00000000767	Rpa1-201	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse

1285065

ATT...

IKD...

ATT

Alternative
InCDS
Overlapping
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
8934	ENSMUST00000000767	Rpa1-201	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse

1288637

ACG...

TSR...

ACG

InCDS
Overlapping
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
8934	ENSMUST00000000767	Rpa1-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse

654635

GTG...

VAG...

GTG

Alternative
InCDS
Overlapping
sORF

3T3, B_cell, R1E,
MEF, Neutrophil, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
8934	ENSMUST00000000767	Rpa1-201	protein_coding	Ribo-seq		3	sORFs_org_Mouse
314287	ENSMUST00000092907	Rpa1-202	protein_coding	Ribo-seq		4	sORFs_org_Mouse

419624

ATA...

IKP...

ATA

ncRNA
sORF

C2C12

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
22902	ENSMUST00000135770	Rpa1-203	processed_transcript	Ribo-seq		1	sORFs_org_Mouse

19459

CTG...

LSE...

CTG

ncRNA
sORF

Neutrophil, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
19460	ENSMUST00000149365	Rpa1-204	processed_transcript	Ribo-seq		2	sORFs_org_Mouse

1286104

153

GTG...

VFP...

GTG

Alternative
InCDS
Overlapping
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
8934	ENSMUST00000000767	Rpa1-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse

658813

162

CTG...

LNW...

CTG

Alternative
InCDS
Overlapping
sORF

3T3, E14, MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
314287	ENSMUST00000092907	Rpa1-202	protein_coding	Ribo-seq		3	sORFs_org_Mouse

311645

192

GTG...

VFL...

GTG

ncRNA
sORF

Brain, Neutrophil, R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
22902	ENSMUST00000135770	Rpa1-203	processed_transcript	Ribo-seq		3	sORFs_org_Mouse

1292325

ATT...

IYV...

ATT

Alternative
InCDS
Overlapping
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
8934	ENSMUST00000000767	Rpa1-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse

1294079

108

AGG...

RET...

AGG

Alternative
InCDS
Overlapping
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
8934	ENSMUST00000000767	Rpa1-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse

644318

GTG...

VSA...

GTG

Alternative
InCDS
Overlapping
sORF

3T3, MEF, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
314287	ENSMUST00000092907	Rpa1-202	protein_coding	Ribo-seq	moderate	3	sORFs_org_Mouse

91221

147

TTG...

LMD...

TTG

Intronic
sORF

Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
19399	ENSMUST00000154894	Rpa1-205	retained_intron	Ribo-seq		1	sORFs_org_Mouse

20475

GTG...

VGH...

GTG

ncRNA
sORF

BMDC, Brain, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
19460	ENSMUST00000149365	Rpa1-204	processed_transcript	Ribo-seq		4	sORFs_org_Mouse

455251

102

TTG...

LKR...

TTG

Alternative
InCDS
Overlapping
sORF

3T3, BMDC, E14,
MEF, v6-5, Brain,
Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
314287	ENSMUST00000092907	Rpa1-202	protein_coding	Ribo-seq		6	sORFs_org_Mouse
8934	ENSMUST00000000767	Rpa1-201	protein_coding	Ribo-seq		4	sORFs_org_Mouse

1289107

AGG...

RKA...

AGG

InCDS
Overlapping
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
8934	ENSMUST00000000767	Rpa1-201	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse

639994

GTG...

VRS...

GTG

Alternative
InCDS
Overlapping
sORF

3T3, E14, MEF,
NSC, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
314287	ENSMUST00000092907	Rpa1-202	protein_coding	Ribo-seq	moderate	6	sORFs_org_Mouse

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