Gene NCBI:67693 | MetamORF

Gene

ID CARD

NCBI:67693

Aliases

2310003F16Rik
ENSMUSG00000027245, HSPC136, Hypk
MGI:1914943, NCBI:67693, OFF:Hypk

Chromosome

Transcripts

18 ORFs
5 known transcripts
33 ORF to known transcript associations

MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

ORFs

Display all the transcripts related to the entry.

96634

ENSMUST00000125849

Hypk-203

retained_intron

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
96633	30	GTG ...	VEA ...	Ribo-seq	GTG	strong	2	sORFs_org_Mouse	Intronic sORF	Brain, Spleen_B_cell
113995	33	GTG ...	VVE ...	Ribo-seq	GTG	strong	2	sORFs_org_Mouse	Intronic sORF	Brain, Spleen_B_cell
45594	45	GTG ...	VRS ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Intronic sORF	Brain, Spleen_B_cell
45879	45	ATG ...	MRR ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Intronic sORF	Spleen_B_cell
47628	51	CTG ...	LTM ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	Spleen_B_cell
101826	54	TTG ...	LRE ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	Intronic sORF	BMDC, Brain, Spleen_B_cell

49586

ENSMUST00000110612

Hypk-202

protein_coding

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
49585	93	TTG ...	LET ...	Ribo-seq	TTG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, R1E, Spleen_B_cell, Testis
45594	45	GTG ...	VRS ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, R1E
45879	45	ATG ...	MRR ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
50718	147	ATG ...	MRR ...	Ribo-seq	ATG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, R1E, Spleen_B_cell, Testis
47628	51	CTG ...	LTM ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
50449	153	CTG ...	LTM ...	Ribo-seq	CTG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, R1E, Spleen_B_cell, Testis

1503213

ENSMUST00000131870

Hypk-205

retained_intron

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

101826

TTG ...

LRE ...

Ribo-seq

TTG

moderate

sORFs_org_Mouse

NSC

113995

GTG ...

VVE ...

Ribo-seq

GTG

strong

sORFs_org_Mouse

NSC

44507

ENSMUST00000028677

Hypk-201

processed_transcript

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
48821	261	TTG ...	LEL ...	Ribo-seq	TTG		2	sORFs_org_Mouse	ncRNA sORF	Neutrophil, Testis
113995	33	GTG ...	VVE ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	ncRNA sORF	Brain
101826	54	TTG ...	LRE ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	ncRNA sORF	E14, MEF, Neutrophil
48093	267	GTG ...	VEL ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	Neutrophil, Testis
47628	51	CTG ...	LTM ...	Ribo-seq	CTG		10	sORFs_org_Mouse	ncRNA sORF	BMDC, Brain, E14, Liver, MEF, NSC, R1E, Testis, v6-5
45879	45	ATG ...	MRR ...	Ribo-seq	ATG		10	sORFs_org_Mouse	ncRNA sORF	BMDC, Brain, E14, Liver, MEF, NSC, R1E, Testis, v6-5
44506	78	TTG ...	LET ...	Ribo-seq	TTG		2	sORFs_org_Mouse	ncRNA sORF	E14, Testis
809359	81	ATG ...	MYK ...	Ribo-seq	ATG		3	sORFs_org_Mouse	ncRNA sORF	MEF, R1E

3448864

UNKNOWN_TRANSCRIPT

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
50718	147	ATG ...	MRR ...	Predicted	ATG		1	Samandi2017	sORF

863645

ENSMUST00000126764

Hypk-204

protein_coding

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
47628	51	CTG ...	LTM ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
1681552	36	ATG ...	MCF ...	Ribo-seq	ATG	moderate	1	Johnstone2016	Alternative Downstream sORF	Glioma, Liver, MEF, MESC
45594	45	GTG ...	VRS ...	Ribo-seq	GTG	moderate	7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14, MEF, Neutrophil, v6-5
1216865	219	ACG ...	TVQ ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	E14
49585	93	TTG ...	LET ...	Ribo-seq	TTG		11	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, v6-5
50718	147	ATG ...	MRR ...	Ribo-seq	ATG		14	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	BMDC, Brain, E14, Glioma, Liver, MEF, MESC, Neutrophil, NSC, v6-5
1643099	30	TTG ...	LMK ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Downstream sORF	MEF
50449	153	CTG ...	LTM ...	Ribo-seq	CTG		13	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, v6-5
1642477	39	TTG ...	LSV ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	Alternative Downstream sORF	MEF
1216675	57	AAG ...	KSG ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
45879	45	ATG ...	MRR ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF

ORFs

18 ORFs
5 known transcripts
33 ORF to known transcript associations

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF Length

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Start codon

The start codon sequence of the ORF.

ORF annotations

A comma-separated list of all the annotations computed by our algorithm for the ORF. This list includes the annotations computed for the ORF for all transcripts. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of all the cell types in which the ORF has already been identified.

Transcripts

Display all the transcripts related to the entry.

96633

GTG...

VEA...

GTG

Intronic
sORF
Alternative
Downstream
NMD

Brain, Spleen_B_cell, B_cell,
E14, Liver

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
96634	ENSMUST00000125849	Hypk-203	retained_intron	Ribo-seq	strong	2	sORFs_org_Mouse
105812	ENSMUST00000154418	Serf2-206	nonsense_mediated_decay	Ribo-seq	strong	4	sORFs_org_Mouse

48093

267

GTG...

VEL...

GTG

Downstream
NMD
sORF
ncRNA

B_cell, Brain, E14,
Neutrophil, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
105812	ENSMUST00000154418	Serf2-206	nonsense_mediated_decay	Ribo-seq		3	sORFs_org_Mouse
44507	ENSMUST00000028677	Hypk-201	processed_transcript	Ribo-seq		2	sORFs_org_Mouse

49585

TTG...

LET...

TTG

Alternative
InCDS
Overlapping
sORF

3T3, B_cell, Brain,
R1E, Spleen_B_cell, Testis,
BMDC, E14, Liver,
MEF, Neutrophil, NSC,
v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
49586	ENSMUST00000110612	Hypk-202	protein_coding	Ribo-seq		6	sORFs_org_Mouse
863645	ENSMUST00000126764	Hypk-204	protein_coding	Ribo-seq		11	sORFs_org_Mouse

101826

TTG...

LRE...

TTG

Intronic
sORF
ncRNA
Alternative
Downstream
NMD

NSC, E14, MEF,
Neutrophil, B_cell, Brain,
Liver, BMDC, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
1503213	ENSMUST00000131870	Hypk-205	retained_intron	Ribo-seq	moderate	1	sORFs_org_Mouse
44507	ENSMUST00000028677	Hypk-201	processed_transcript	Ribo-seq	moderate	3	sORFs_org_Mouse
105812	ENSMUST00000154418	Serf2-206	nonsense_mediated_decay	Ribo-seq	moderate	3	sORFs_org_Mouse
96634	ENSMUST00000125849	Hypk-203	retained_intron	Ribo-seq	moderate	3	sORFs_org_Mouse

48821

261

TTG...

LEL...

TTG

ncRNA
sORF
Downstream
NMD

Neutrophil, Testis, B_cell,
Brain, E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
44507	ENSMUST00000028677	Hypk-201	processed_transcript	Ribo-seq		2	sORFs_org_Mouse
105812	ENSMUST00000154418	Serf2-206	nonsense_mediated_decay	Ribo-seq		3	sORFs_org_Mouse

45594

GTG...

VRS...

GTG

Alternative
InCDS
Overlapping
sORF
Downstream
NMD
Intronic

3T3, R1E, Testis,
Brain, Spleen_B_cell, BMDC,
E14, MEF, Neutrophil,
v6-5, B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
49586	ENSMUST00000110612	Hypk-202	protein_coding	Ribo-seq	moderate	2	sORFs_org_Mouse
45595	ENSMUST00000148575	Serf2-205	nonsense_mediated_decay	Ribo-seq	moderate	1	sORFs_org_Mouse
96634	ENSMUST00000125849	Hypk-203	retained_intron	Ribo-seq	moderate	2	sORFs_org_Mouse
863645	ENSMUST00000126764	Hypk-204	protein_coding	Ribo-seq	moderate	7	sORFs_org_Mouse
105812	ENSMUST00000154418	Serf2-206	nonsense_mediated_decay	Ribo-seq	moderate	3	sORFs_org_Mouse

47628

CTG...

LTM...

CTG

Alternative
Downstream
NMD
sORF
InCDS
Overlapping
ncRNA
Intronic

B_cell, Brain, E14,
Liver, MEF, BMDC,
NSC, R1E, Testis,
v6-5, Spleen_B_cell, 3T3

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
105812	ENSMUST00000154418	Serf2-206	nonsense_mediated_decay	Ribo-seq		5	sORFs_org_Mouse
863645	ENSMUST00000126764	Hypk-204	protein_coding	Ribo-seq		1	sORFs_org_Mouse
44507	ENSMUST00000028677	Hypk-201	processed_transcript	Ribo-seq		10	sORFs_org_Mouse
96634	ENSMUST00000125849	Hypk-203	retained_intron	Ribo-seq	weak	1	sORFs_org_Mouse
49586	ENSMUST00000110612	Hypk-202	protein_coding	Ribo-seq		1	sORFs_org_Mouse

50718

147

ATG...

MRR...

ATG

sORF
Alternative
InCDS
Overlapping

3T3, B_cell,
Brain, R1E, Spleen_B_cell,
Testis, BMDC, E14,
Glioma, Liver, MEF,
MESC, Neutrophil, NSC,
v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
3448864	UNKNOWN_TRANSCRIPT			Predicted		1	Samandi2017
49586	ENSMUST00000110612	Hypk-202	protein_coding	Ribo-seq		6	sORFs_org_Mouse
863645	ENSMUST00000126764	Hypk-204	protein_coding	Ribo-seq		14	sORFs_org_Mouse Johnstone2016

44506

TTG...

LET...

TTG

Alternative
Downstream
NMD
sORF
ncRNA

B_cell, MEF, E14,
Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
105812	ENSMUST00000154418	Serf2-206	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse
44507	ENSMUST00000028677	Hypk-201	processed_transcript	Ribo-seq		2	sORFs_org_Mouse

113995

GTG...

VVE...

GTG

ncRNA
sORF
Intronic
Alternative
Downstream
NMD

Brain, Spleen_B_cell, B_cell,
Liver, NSC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
44507	ENSMUST00000028677	Hypk-201	processed_transcript	Ribo-seq	strong	1	sORFs_org_Mouse
96634	ENSMUST00000125849	Hypk-203	retained_intron	Ribo-seq	strong	2	sORFs_org_Mouse
105812	ENSMUST00000154418	Serf2-206	nonsense_mediated_decay	Ribo-seq	strong	3	sORFs_org_Mouse
1503213	ENSMUST00000131870	Hypk-205	retained_intron	Ribo-seq	strong	1	sORFs_org_Mouse

45879

ATG...

MRR...

ATG

Alternative
Downstream
NMD
sORF
InCDS
Overlapping
ncRNA
Intronic

B_cell, Brain, E14,
Liver, MEF, 3T3,
BMDC, NSC, R1E,
Testis, v6-5, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
105812	ENSMUST00000154418	Serf2-206	nonsense_mediated_decay	Ribo-seq		5	sORFs_org_Mouse
49586	ENSMUST00000110612	Hypk-202	protein_coding	Ribo-seq		1	sORFs_org_Mouse
44507	ENSMUST00000028677	Hypk-201	processed_transcript	Ribo-seq		10	sORFs_org_Mouse
96634	ENSMUST00000125849	Hypk-203	retained_intron	Ribo-seq	moderate	1	sORFs_org_Mouse
863645	ENSMUST00000126764	Hypk-204	protein_coding	Ribo-seq		1	sORFs_org_Mouse

1681552

ATG...

MCF...

ATG

Alternative
Downstream
sORF
NMD

Glioma, Liver, MEF,
MESC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
863645	ENSMUST00000126764	Hypk-204	protein_coding	Ribo-seq	moderate	1	Johnstone2016
105812	ENSMUST00000154418	Serf2-206	nonsense_mediated_decay	Ribo-seq	moderate	1	sORFs_org_Mouse

809359

ATG...

MYK...

ATG

Alternative
Downstream
NMD
sORF
ncRNA

B_cell, MEF, R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
105812	ENSMUST00000154418	Serf2-206	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse
44507	ENSMUST00000028677	Hypk-201	processed_transcript	Ribo-seq		3	sORFs_org_Mouse

1216865

219

ACG...

TVQ...

ACG

Alternative
Downstream
Overlapping
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
863645	ENSMUST00000126764	Hypk-204	protein_coding	Ribo-seq		1	sORFs_org_Mouse

1643099

TTG...

LMK...

TTG

Downstream
sORF

MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
863645	ENSMUST00000126764	Hypk-204	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse

50449

153

CTG...

LTM...

CTG

Alternative
InCDS
Overlapping
sORF

BMDC, Brain, E14,
Liver, MEF, Neutrophil,
NSC, v6-5, 3T3,
B_cell, R1E, Spleen_B_cell,
Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
863645	ENSMUST00000126764	Hypk-204	protein_coding	Ribo-seq		13	sORFs_org_Mouse
49586	ENSMUST00000110612	Hypk-202	protein_coding	Ribo-seq		6	sORFs_org_Mouse

1642477

TTG...

LSV...

TTG

Alternative
Downstream
sORF

MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
863645	ENSMUST00000126764	Hypk-204	protein_coding	Ribo-seq	weak	2	sORFs_org_Mouse

1216675

AAG...

KSG...

AAG

Alternative
InCDS
Overlapping
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
863645	ENSMUST00000126764	Hypk-204	protein_coding	Ribo-seq		1	sORFs_org_Mouse

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