Gene NCBI:67144 | MetamORF

Gene

ID CARD

NCBI:67144

Aliases

2610040E16Rik
AI837674, ENSMUSG00000063052, Lrrc40
MGI:1914394, NCBI:67144, OFF:Lrrc40

Chromosome

Transcripts

84 ORFs
8 known transcripts
200 ORF to known transcript associations

MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

ORFs

Display all the transcripts related to the entry.

127997

ENSMUST00000156597

Lrrc40-206

nonsense_mediated_decay

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
135662	108	CTG ...	LDL ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Downstream NMD sORF	3T3, Brain, R1E
135947	96	TTG ...	LGN ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Downstream NMD sORF	Brain, R1E
129087	72	TTG ...	LRR ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Downstream NMD sORF	3T3, Brain, R1E
817120	60	GTG ...	VRD ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	B_cell
52654	111	GTG ...	VPA ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative Downstream NMD sORF	3T3, R1E
52139	33	TTG ...	LPA ...	Ribo-seq	TTG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	R1E
128389	33	CTG ...	LSN ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Downstream NMD sORF	Brain, R1E
138378	105	GTG ...	VGS ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Downstream NMD sORF	3T3, Brain, R1E
1174950	96	ATG ...	MTY ...	Ribo-seq	ATG		1	Johnstone2016	Alternative Downstream NMD sORF	Glioma, Liver, MEF, MESC
504549	78	ATG ...	MWT ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3, B_cell, R1E
506591	66	CTG ...	LKR ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3, B_cell, R1E
127276	42	TTG ...	LPA ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	R1E
52450	33	CTG ...	LEY ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Downstream NMD sORF	R1E
130375	126	CTG ...	LET ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Downstream NMD sORF	3T3, Brain, R1E
1646051	45	CTG ...	LRK ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative Downstream NMD sORF	MEF
54148	165	GTG ...	VDI ...	Ribo-seq	GTG		2	sORFs_org_Mouse	InCDS NMD Overlapping sORF	3T3, R1E
128733	33	GTG ...	VCL ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3, Brain, R1E
1375811	108	CTG ...	LPC ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Downstream NMD sORF	R1E
138709	126	CTG ...	LQA ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Downstream NMD sORF	3T3, Brain, R1E
128495	63	CTG ...	LTS ...	Ribo-seq	CTG		2	sORFs_org_Mouse	InCDS NMD Overlapping sORF	3T3, R1E
539952	45	GTG ...	VGS ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3, R1E
540919	63	ATG ...	MTF ...	Ribo-seq	ATG		1	Johnstone2016	Alternative Downstream NMD sORF	Glioma, Liver, MEF, MESC
128955	57	CTG ...	LQS ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Downstream NMD sORF	3T3, Brain, R1E
1173993	57	TTG ...	LRV ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Downstream NMD sORF	R1E
52112	168	CTG ...	LYR ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative Downstream NMD sORF	3T3, Brain, MEF, R1E
54713	78	TTG ...	LRL ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative Downstream NMD sORF	3T3, R1E
1174932	45	ATG ...	MIL ...	Ribo-seq	ATG		1	Johnstone2016	Alternative Downstream NMD sORF	Glioma, Liver, MEF, MESC
53905	138	CTG ...	LIS ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative Downstream NMD sORF	3T3, Brain, MEF, R1E
138464	60	CTG ...	LLQ ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Downstream NMD sORF	3T3, R1E
1647460	51	CTG ...	LSL ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative Downstream NMD sORF	MEF
749936	39	ATG ...	MEI ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse Johnstone2016	Alternative Downstream NMD sORF	3T3, Glioma, Liver, MEF, MESC
136159	81	TTG ...	LLY ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Downstream NMD sORF	3T3, Brain, R1E
138758	45	TTG ...	LQI ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Alternative Downstream NMD sORF	3T3, MEF, R1E
751530	42	CTG ...	LKF ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Alternative Downstream NMD sORF	3T3, MEF
136413	96	TTG ...	LIP ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Downstream NMD sORF	3T3, Brain, R1E
1175772	42	ATG ...	MLA ...	Ribo-seq	ATG		1	Johnstone2016	Alternative Downstream NMD sORF	Glioma, Liver, MEF, MESC
53978	90	CTG ...	LSS ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative Downstream NMD sORF	3T3, R1E
749501	48	ATG ...	MVG ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3, R1E
130791	117	GTG ...	VPP ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Downstream NMD sORF	3T3, Brain, R1E
503014	45	ATG ...	MIE ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse Johnstone2016	Alternative Downstream NMD sORF	3T3, Glioma, Liver, MEF, MESC
139126	87	CTG ...	LRS ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Downstream NMD sORF	3T3, Brain, R1E
54778	90	CTG ...	LME ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative Downstream NMD sORF	3T3, Brain, MEF, R1E
137907	48	TTG ...	LER ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Downstream NMD sORF	3T3, Brain, R1E
539026	36	GTG ...	VFY ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	3T3
136949	111	GTG ...	VDP ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative Downstream NMD sORF	Brain, MEF, R1E
52705	36	GTG ...	VLE ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Downstream NMD sORF	R1E
138114	87	CTG ...	LEL ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Downstream NMD sORF	3T3, Brain, R1E
817990	69	TTG ...	LTL ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	B_cell
139051	63	TTG ...	LPE ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Alternative Downstream NMD sORF	3T3, Brain, R1E
139774	147	TTG ...	LDC ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Downstream NMD sORF	Brain, MEF, R1E
52707	150	CTG ...	LEA ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative Downstream NMD sORF	3T3, Brain, MEF, R1E
54490	93	CTG ...	LTK ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	R1E
53947	93	TTG ...	LLS ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative Downstream NMD sORF	3T3, R1E
128204	72	CTG ...	LAL ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Downstream NMD sORF	Brain, R1E
134372	81	TTG ...	LKF ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Downstream NMD sORF	Brain, R1E
52296	78	CTG ...	LNT ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative Downstream NMD sORF	3T3, Brain, MEF, R1E
52695	183	GTG ...	VFP ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Alternative Downstream NMD sORF	3T3, Brain, MEF, R1E
52936	99	CTG ...	LLD ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Downstream NMD sORF	Brain, R1E
1173020	120	ATG ...	MPI ...	Ribo-seq	ATG	moderate	1	Johnstone2016	Alternative Downstream NMD sORF	Glioma, Liver, MEF, MESC
504366	30	CTG ...	LND ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3, B_cell, R1E
54281	81	CTG ...	LLR ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative Downstream NMD sORF	3T3, R1E
138825	51	CTG ...	LKN ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	R1E
53940	33	CTG ...	LQT ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	Brain
127996	42	CTG ...	LTK ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative Downstream NMD sORF	3T3, Brain, R1E

138465

ENSMUST00000150525

Lrrc40-205

nonsense_mediated_decay

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1219601	102	CTG ...	LMT ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14
138378	105	GTG ...	VGS ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Downstream NMD sORF	E14, v6-5
128733	33	GTG ...	VCL ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	MEF, v6-5
130791	117	GTG ...	VPP ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Downstream NMD sORF	E14, v6-5
1223211	153	AAG ...	KLG ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Downstream NMD sORF	E14
1173993	57	TTG ...	LRV ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Downstream NMD sORF	E14, v6-5
52705	36	GTG ...	VLE ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Downstream NMD sORF	E14
54148	165	GTG ...	VDI ...	Ribo-seq	GTG		5	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Brain, E14, MEF, v6-5
128955	57	CTG ...	LQS ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Downstream NMD sORF	E14, MEF, Neutrophil, v6-5
136413	96	TTG ...	LIP ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Downstream NMD sORF	Brain, E14, Liver, v6-5
1219915	42	ATA ...	IEP ...	Ribo-seq	ATA	strong	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14
1171365	123	GTG ...	VMP ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Alternative Downstream NMD sORF	MEF, v6-5
1649628	39	CTG ...	LNI ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	MEF
506591	66	CTG ...	LKR ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	MEF, NSC
749936	39	ATG ...	MEI ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14
54490	93	CTG ...	LTK ...	Ribo-seq	CTG		5	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Brain, E14, MEF, v6-5
53947	93	TTG ...	LLS ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14, Liver, MEF, v6-5
749501	48	ATG ...	MVG ...	Ribo-seq	ATG	strong	3	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14, MEF
1170959	30	GTG ...	VKP ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	v6-5
134372	81	TTG ...	LKF ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Downstream NMD sORF	E14
137907	48	TTG ...	LER ...	Ribo-seq	TTG		7	sORFs_org_Mouse	Downstream NMD sORF	Brain, E14, MEF, Neutrophil, Spleen_B_cell, v6-5
138114	87	CTG ...	LEL ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Downstream NMD sORF	E14, v6-5
1171327	102	CTG ...	LCL ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	v6-5
127996	42	CTG ...	LTK ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14, Liver, MEF, v6-5
52695	183	GTG ...	VFP ...	Ribo-seq	GTG		6	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14, Liver, MEF, Neutrophil, v6-5
54281	81	CTG ...	LLR ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14, Liver, v6-5
1173128	90	ATG ...	MWV ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	v6-5
52296	78	CTG ...	LNT ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14, Liver, MEF, Neutrophil, v6-5
1375811	108	CTG ...	LPC ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Downstream NMD sORF	E14
52112	168	CTG ...	LYR ...	Ribo-seq	CTG		6	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14, Liver, MEF, Neutrophil, v6-5
1173020	120	ATG ...	MPI ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Alternative Downstream NMD sORF	MEF, v6-5
503014	45	ATG ...	MIE ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	Spleen_B_cell
1647460	51	CTG ...	LSL ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	MEF
1171032	42	ATG ...	MTS ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain, v6-5
53905	138	CTG ...	LIS ...	Ribo-seq	CTG		6	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14, Liver, MEF, Neutrophil, v6-5
817990	69	TTG ...	LTL ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain
504366	30	CTG ...	LND ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	MEF
52936	99	CTG ...	LLD ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	Downstream NMD sORF	E14, Liver, MEF, v6-5
1646051	45	CTG ...	LRK ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	MEF
817120	60	GTG ...	VRD ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain
539952	45	GTG ...	VGS ...	Ribo-seq	GTG	strong	2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14, MEF
128495	63	CTG ...	LTS ...	Ribo-seq	CTG		6	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Brain, E14, Liver, MEF, Neutrophil, v6-5
53940	33	CTG ...	LQT ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14, Liver, MEF, v6-5
54713	78	TTG ...	LRL ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14, Liver, v6-5
54778	90	CTG ...	LME ...	Ribo-seq	CTG		6	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14, Liver, MEF, Neutrophil, v6-5
128204	72	CTG ...	LAL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Downstream NMD sORF	E14
128389	33	CTG ...	LSN ...	Ribo-seq	CTG		7	sORFs_org_Mouse	Downstream NMD sORF	Brain, E14, MEF, Neutrophil, Spleen_B_cell, v6-5
130375	126	CTG ...	LET ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Downstream NMD sORF	E14, MEF, v6-5
52450	33	CTG ...	LEY ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Downstream NMD sORF	v6-5
52139	33	TTG ...	LPA ...	Ribo-seq	TTG		3	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Brain, E14, v6-5
136949	111	GTG ...	VDP ...	Ribo-seq	GTG		5	sORFs_org_Mouse	Alternative Downstream NMD sORF	3T3, E14, MEF, Neutrophil, v6-5
138709	126	CTG ...	LQA ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Downstream NMD sORF	E14, MEF, Neutrophil, v6-5
129087	72	TTG ...	LRR ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Downstream NMD sORF	E14, v6-5
52654	111	GTG ...	VPA ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14, Liver, MEF, v6-5
751530	42	CTG ...	LKF ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	MEF
1172708	93	CTG ...	LMW ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	v6-5
139126	87	CTG ...	LRS ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Downstream NMD sORF	E14, MEF, v6-5
138825	51	CTG ...	LKN ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14, v6-5
52707	150	CTG ...	LEA ...	Ribo-seq	CTG		6	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14, Liver, MEF, Neutrophil, v6-5
139774	147	TTG ...	LDC ...	Ribo-seq	TTG		5	sORFs_org_Mouse	Downstream NMD sORF	3T3, E14, MEF, Neutrophil, v6-5
136159	81	TTG ...	LLY ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Downstream NMD sORF	E14, v6-5
135662	108	CTG ...	LDL ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Downstream NMD sORF	E14, MEF, Neutrophil, v6-5
138758	45	TTG ...	LQI ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Alternative Downstream NMD sORF	MEF, Neutrophil, v6-5
135947	96	TTG ...	LGN ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Downstream NMD sORF	E14
139051	63	TTG ...	LPE ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14, Liver, MEF, v6-5
53978	90	CTG ...	LSS ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14, Liver, v6-5
504549	78	ATG ...	MWT ...	Ribo-seq	ATG	weak	3	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	MEF, NSC, v6-5
129020	45	CTG ...	LMT ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	v6-5
138464	60	CTG ...	LLQ ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Downstream NMD sORF	Brain, E14, MEF, Neutrophil, v6-5

52140

ENSMUST00000131518

Lrrc40-203

nonsense_mediated_decay

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
506591	66	CTG ...	LKR ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	NMD sORF	MEF
128733	33	GTG ...	VCL ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	NMD sORF	MEF
1171365	123	GTG ...	VMP ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	NMD sORF	MEF
504549	78	ATG ...	MWT ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	NMD sORF	MEF
54490	93	CTG ...	LTK ...	Ribo-seq	CTG		1	sORFs_org_Mouse	NMD sORF	Testis
53947	93	TTG ...	LLS ...	Ribo-seq	TTG		1	sORFs_org_Mouse	NMD sORF	Testis
52654	111	GTG ...	VPA ...	Ribo-seq	GTG		1	sORFs_org_Mouse	NMD sORF	Testis
54281	81	CTG ...	LLR ...	Ribo-seq	CTG		1	sORFs_org_Mouse	NMD sORF	Testis
1173020	120	ATG ...	MPI ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	NMD sORF	MEF
54148	165	GTG ...	VDI ...	Ribo-seq	GTG		1	sORFs_org_Mouse	NMD sORF	Testis
54713	78	TTG ...	LRL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	NMD sORF	Testis
53978	90	CTG ...	LSS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	NMD sORF	Testis
52139	33	TTG ...	LPA ...	Ribo-seq	TTG		1	sORFs_org_Mouse	NMD sORF	Testis

52113

ENSMUST00000132530

Lrrc40-204

retained_intron

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
53905	138	CTG ...	LIS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Testis
52112	168	CTG ...	LYR ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Testis
52296	78	CTG ...	LNT ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Testis
139051	63	TTG ...	LPE ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	Spleen_B_cell
53940	33	CTG ...	LQT ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Testis
52450	33	CTG ...	LEY ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Intronic sORF	Testis
52695	183	GTG ...	VFP ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Testis
54778	90	CTG ...	LME ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Testis
52705	36	GTG ...	VLE ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Testis
52936	99	CTG ...	LLD ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	Testis
52707	150	CTG ...	LEA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Testis

503081

ENSMUST00000200540

Lrrc40-208

nonsense_mediated_decay

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
506591	66	CTG ...	LKR ...	Ribo-seq	CTG		1	sORFs_org_Mouse	NMD sORF	Spleen_B_cell
504366	30	CTG ...	LND ...	Ribo-seq	CTG		1	sORFs_org_Mouse	NMD sORF	Spleen_B_cell
1171032	42	ATG ...	MTS ...	Ribo-seq	ATG		1	sORFs_org_Mouse	NMD sORF	E14
504549	78	ATG ...	MWT ...	Ribo-seq	ATG		2	sORFs_org_Mouse	NMD sORF	E14, Spleen_B_cell
128495	63	CTG ...	LTS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	NMD sORF	Spleen_B_cell
1220005	201	AAG ...	KAA ...	Ribo-seq	AAG		1	sORFs_org_Mouse	NMD sORF	E14
749501	48	ATG ...	MVG ...	Ribo-seq	ATG		1	sORFs_org_Mouse	NMD sORF	E14
128733	33	GTG ...	VCL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	NMD sORF	Spleen_B_cell

126647

ENSMUST00000123028

Lrrc40-202

nonsense_mediated_decay

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
52139	33	TTG ...	LPA ...	Ribo-seq	TTG		1	sORFs_org_Mouse	NMD sORF	Brain
53947	93	TTG ...	LLS ...	Ribo-seq	TTG		1	sORFs_org_Mouse	NMD sORF	Brain
54713	78	TTG ...	LRL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	NMD sORF	Brain
54281	81	CTG ...	LLR ...	Ribo-seq	CTG		1	sORFs_org_Mouse	NMD sORF	Brain
54148	165	GTG ...	VDI ...	Ribo-seq	GTG		1	sORFs_org_Mouse	NMD sORF	Brain
53978	90	CTG ...	LSS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	NMD sORF	Brain
127276	42	TTG ...	LPA ...	Ribo-seq	TTG		1	sORFs_org_Mouse	NMD sORF	Brain
128733	33	GTG ...	VCL ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	NMD sORF	MEF
54490	93	CTG ...	LTK ...	Ribo-seq	CTG		1	sORFs_org_Mouse	NMD sORF	Brain
129020	45	CTG ...	LMT ...	Ribo-seq	CTG		1	sORFs_org_Mouse	NMD sORF	Brain
52654	111	GTG ...	VPA ...	Ribo-seq	GTG		1	sORFs_org_Mouse	NMD sORF	Brain
138825	51	CTG ...	LKN ...	Ribo-seq	CTG		1	sORFs_org_Mouse	NMD sORF	Brain
128495	63	CTG ...	LTS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	NMD sORF	Brain

138759

ENSMUST00000199290

Lrrc40-207

retained_intron

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
53905	138	CTG ...	LIS ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Intronic sORF	E14, Spleen_B_cell
53940	33	CTG ...	LQT ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Spleen_B_cell
136949	111	GTG ...	VDP ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Spleen_B_cell
138758	45	TTG ...	LQI ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	Intronic sORF	Brain, Spleen_B_cell
127996	42	CTG ...	LTK ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Spleen_B_cell
52296	78	CTG ...	LNT ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Spleen_B_cell
52695	183	GTG ...	VFP ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Spleen_B_cell
52707	150	CTG ...	LEA ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Intronic sORF	Spleen_B_cell
52112	168	CTG ...	LYR ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Spleen_B_cell
54778	90	CTG ...	LME ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Intronic sORF	E14, Spleen_B_cell

3004942

UNKNOWN_TRANSCRIPT

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1173020	120	ATG ...	MPI ...	Predicted	ATG		1	Samandi2017	sORF
1174950	96	ATG ...	MTY ...	Predicted	ATG		1	Samandi2017	sORF

143360

ENSMUST00000072080

Lrrc40-201

protein_coding

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1175427	84	ATG ...	MPQ ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	v6-5
1175154	57	ATG ...	MTS ...	Ribo-seq	ATG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, R1E, v6-5
1175824	87	TTG ...	LMP ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	v6-5
1223899	72	ATC ...	IFP ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1175772	42	ATG ...	MLA ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, v6-5
540919	63	ATG ...	MTF ...	Ribo-seq	ATG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, MEF, v6-5
1175716	60	CTG ...	LMT ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, R1E, v6-5
1376219	84	CTG ...	LLI ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, R1E
1174932	45	ATG ...	MIL ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	v6-5
1175694	99	CTG ...	LMT ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, v6-5
143359	36	TTG ...	LGT ...	Ribo-seq	TTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, MEF, Spleen_B_cell
1174950	96	ATG ...	MTY ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	v6-5

ORFs

84 ORFs
8 known transcripts
200 ORF to known transcript associations

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF Length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Start codon

The start codon sequence of the ORF.

ORF annotations

A comma-separated list of all the annotations computed by our algorithm for the ORF. This list includes the annotations computed for the ORF for all transcripts. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of all the cell types in which the ORF has already been identified.

Transcripts

Display all the transcripts related to the entry.

135662

108

CTG...

LDL...

CTG

Downstream
NMD
sORF

3T3, Brain, R1E,
E14, MEF, Neutrophil,
v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
127997	ENSMUST00000156597	Lrrc40-206	nonsense_mediated_decay	Ribo-seq		3	sORFs_org_Mouse
138465	ENSMUST00000150525	Lrrc40-205	nonsense_mediated_decay	Ribo-seq		4	sORFs_org_Mouse

135947

TTG...

LGN...

TTG

Downstream
NMD
sORF

Brain, R1E, E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
127997	ENSMUST00000156597	Lrrc40-206	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse
138465	ENSMUST00000150525	Lrrc40-205	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

129087

TTG...

LRR...

TTG

Downstream
NMD
sORF

3T3, Brain, R1E,
E14, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
127997	ENSMUST00000156597	Lrrc40-206	nonsense_mediated_decay	Ribo-seq		3	sORFs_org_Mouse
138465	ENSMUST00000150525	Lrrc40-205	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse

1219601

102

CTG...

LMT...

CTG

Alternative
Downstream
NMD
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
138465	ENSMUST00000150525	Lrrc40-205	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

817120

GTG...

VRD...

GTG

Alternative
InCDS
NMD
Overlapping
sORF

B_cell, Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
127997	ENSMUST00000156597	Lrrc40-206	nonsense_mediated_decay	Ribo-seq	weak	1	sORFs_org_Mouse
138465	ENSMUST00000150525	Lrrc40-205	nonsense_mediated_decay	Ribo-seq	weak	1	sORFs_org_Mouse

138378

105

GTG...

VGS...

GTG

Downstream
NMD
sORF

E14, v6-5, 3T3,
Brain, R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
138465	ENSMUST00000150525	Lrrc40-205	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse
127997	ENSMUST00000156597	Lrrc40-206	nonsense_mediated_decay	Ribo-seq		3	sORFs_org_Mouse

52654

111

GTG...

VPA...

GTG

Alternative
Downstream
NMD
sORF

3T3, R1E, Testis,
E14, Liver, MEF,
v6-5, Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
127997	ENSMUST00000156597	Lrrc40-206	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse
52140	ENSMUST00000131518	Lrrc40-203	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse
138465	ENSMUST00000150525	Lrrc40-205	nonsense_mediated_decay	Ribo-seq		4	sORFs_org_Mouse
126647	ENSMUST00000123028	Lrrc40-202	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

128733

GTG...

VCL...

GTG

Alternative
InCDS
NMD
Overlapping
sORF

MEF, v6-5, 3T3,
Brain, R1E, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
138465	ENSMUST00000150525	Lrrc40-205	nonsense_mediated_decay	Ribo-seq	weak	2	sORFs_org_Mouse
52140	ENSMUST00000131518	Lrrc40-203	nonsense_mediated_decay	Ribo-seq	weak	1	sORFs_org_Mouse
127997	ENSMUST00000156597	Lrrc40-206	nonsense_mediated_decay	Ribo-seq		3	sORFs_org_Mouse
126647	ENSMUST00000123028	Lrrc40-202	nonsense_mediated_decay	Ribo-seq	weak	1	sORFs_org_Mouse
503081	ENSMUST00000200540	Lrrc40-208	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

506591

CTG...

LKR...

CTG

NMD
sORF
Alternative
InCDS
Overlapping

MEF, Spleen_B_cell, NSC,
3T3, B_cell, R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
52140	ENSMUST00000131518	Lrrc40-203	nonsense_mediated_decay	Ribo-seq	weak	1	sORFs_org_Mouse
503081	ENSMUST00000200540	Lrrc40-208	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse
138465	ENSMUST00000150525	Lrrc40-205	nonsense_mediated_decay	Ribo-seq	weak	2	sORFs_org_Mouse
127997	ENSMUST00000156597	Lrrc40-206	nonsense_mediated_decay	Ribo-seq		3	sORFs_org_Mouse

53905

138

CTG...

LIS...

CTG

Intronic
sORF
Alternative
Downstream
NMD

Testis, E14, Spleen_B_cell,
Liver, MEF, Neutrophil,
v6-5, 3T3, Brain,
R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
52113	ENSMUST00000132530	Lrrc40-204	retained_intron	Ribo-seq		1	sORFs_org_Mouse
138759	ENSMUST00000199290	Lrrc40-207	retained_intron	Ribo-seq	moderate	2	sORFs_org_Mouse
138465	ENSMUST00000150525	Lrrc40-205	nonsense_mediated_decay	Ribo-seq		6	sORFs_org_Mouse
127997	ENSMUST00000156597	Lrrc40-206	nonsense_mediated_decay	Ribo-seq		4	sORFs_org_Mouse

130791

117

GTG...

VPP...

GTG

Downstream
NMD
sORF

E14, v6-5, 3T3,
Brain, R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
138465	ENSMUST00000150525	Lrrc40-205	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse
127997	ENSMUST00000156597	Lrrc40-206	nonsense_mediated_decay	Ribo-seq		3	sORFs_org_Mouse

1223211

153

AAG...

KLG...

AAG

Downstream
NMD
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
138465	ENSMUST00000150525	Lrrc40-205	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

1173993

TTG...

LRV...

TTG

Downstream
NMD
sORF

E14, v6-5, R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
138465	ENSMUST00000150525	Lrrc40-205	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse
127997	ENSMUST00000156597	Lrrc40-206	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

52139

TTG...

LPA...

TTG

NMD
sORF
InCDS
Overlapping

Brain, R1E, E14,
v6-5, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
126647	ENSMUST00000123028	Lrrc40-202	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse
127997	ENSMUST00000156597	Lrrc40-206	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse
138465	ENSMUST00000150525	Lrrc40-205	nonsense_mediated_decay	Ribo-seq		3	sORFs_org_Mouse
52140	ENSMUST00000131518	Lrrc40-203	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

52705

GTG...

VLE...

GTG

Downstream
NMD
sORF
Intronic

E14, Testis, R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
138465	ENSMUST00000150525	Lrrc40-205	nonsense_mediated_decay	Ribo-seq	moderate	1	sORFs_org_Mouse
52113	ENSMUST00000132530	Lrrc40-204	retained_intron	Ribo-seq	moderate	1	sORFs_org_Mouse
127997	ENSMUST00000156597	Lrrc40-206	nonsense_mediated_decay	Ribo-seq	moderate	1	sORFs_org_Mouse

52112

168

CTG...

LYR...

CTG

Intronic
sORF
Alternative
Downstream
NMD

Testis, E14, Liver,
MEF, Neutrophil, v6-5,
3T3, Brain, R1E,
Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
52113	ENSMUST00000132530	Lrrc40-204	retained_intron	Ribo-seq		1	sORFs_org_Mouse
138465	ENSMUST00000150525	Lrrc40-205	nonsense_mediated_decay	Ribo-seq		6	sORFs_org_Mouse
127997	ENSMUST00000156597	Lrrc40-206	nonsense_mediated_decay	Ribo-seq		4	sORFs_org_Mouse
138759	ENSMUST00000199290	Lrrc40-207	retained_intron	Ribo-seq	moderate	1	sORFs_org_Mouse

1173020

120

ATG...

MPI...

ATG

sORF
Alternative
Downstream
NMD

MEF, v6-5,
Glioma, Liver, MESC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
3004942	UNKNOWN_TRANSCRIPT			Predicted		1	Samandi2017
138465	ENSMUST00000150525	Lrrc40-205	nonsense_mediated_decay	Ribo-seq	moderate	2	sORFs_org_Mouse
52140	ENSMUST00000131518	Lrrc40-203	nonsense_mediated_decay	Ribo-seq	moderate	1	sORFs_org_Mouse
127997	ENSMUST00000156597	Lrrc40-206	nonsense_mediated_decay	Ribo-seq	moderate	1	Johnstone2016

54148

165

GTG...

VDI...

GTG

InCDS
NMD
Overlapping
sORF

Brain, E14, MEF,
v6-5, 3T3, R1E,
Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
138465	ENSMUST00000150525	Lrrc40-205	nonsense_mediated_decay	Ribo-seq		5	sORFs_org_Mouse
126647	ENSMUST00000123028	Lrrc40-202	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse
127997	ENSMUST00000156597	Lrrc40-206	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse
52140	ENSMUST00000131518	Lrrc40-203	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

504366

CTG...

LND...

CTG

NMD
sORF
Alternative
InCDS
Overlapping

Spleen_B_cell, MEF, 3T3,
B_cell, R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
503081	ENSMUST00000200540	Lrrc40-208	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse
138465	ENSMUST00000150525	Lrrc40-205	nonsense_mediated_decay	Ribo-seq	weak	1	sORFs_org_Mouse
127997	ENSMUST00000156597	Lrrc40-206	nonsense_mediated_decay	Ribo-seq		3	sORFs_org_Mouse

1175427

ATG...

MPQ...

ATG

Alternative
InCDS
Overlapping
sORF

v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
143360	ENSMUST00000072080	Lrrc40-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse

128955

CTG...

LQS...

CTG

Downstream
NMD
sORF

E14, MEF, Neutrophil,
v6-5, 3T3, Brain,
R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
138465	ENSMUST00000150525	Lrrc40-205	nonsense_mediated_decay	Ribo-seq		5	sORFs_org_Mouse
127997	ENSMUST00000156597	Lrrc40-206	nonsense_mediated_decay	Ribo-seq		3	sORFs_org_Mouse

53940

CTG...

LQT...

CTG

Intronic
sORF
Alternative
Downstream
NMD

Spleen_B_cell, Testis, E14,
Liver, MEF, v6-5,
Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
138759	ENSMUST00000199290	Lrrc40-207	retained_intron	Ribo-seq		1	sORFs_org_Mouse
52113	ENSMUST00000132530	Lrrc40-204	retained_intron	Ribo-seq		1	sORFs_org_Mouse
138465	ENSMUST00000150525	Lrrc40-205	nonsense_mediated_decay	Ribo-seq		4	sORFs_org_Mouse
127997	ENSMUST00000156597	Lrrc40-206	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

128389

CTG...

LSN...

CTG

Downstream
NMD
sORF

Brain, R1E, E14,
MEF, Neutrophil, Spleen_B_cell,
v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
127997	ENSMUST00000156597	Lrrc40-206	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse
138465	ENSMUST00000150525	Lrrc40-205	nonsense_mediated_decay	Ribo-seq		7	sORFs_org_Mouse

136413

TTG...

LIP...

TTG

Downstream
NMD
sORF

Brain, E14, Liver,
v6-5, 3T3, R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
138465	ENSMUST00000150525	Lrrc40-205	nonsense_mediated_decay	Ribo-seq		4	sORFs_org_Mouse
127997	ENSMUST00000156597	Lrrc40-206	nonsense_mediated_decay	Ribo-seq		3	sORFs_org_Mouse

1219915

ATA...

IEP...

ATA

Alternative
Downstream
NMD
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
138465	ENSMUST00000150525	Lrrc40-205	nonsense_mediated_decay	Ribo-seq	strong	1	sORFs_org_Mouse

1174950

ATG...

MTY...

ATG

Alternative
Downstream
NMD
sORF
InCDS
Overlapping

Glioma, Liver, MEF,
MESC, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
127997	ENSMUST00000156597	Lrrc40-206	nonsense_mediated_decay	Ribo-seq		1	Johnstone2016
3004942	UNKNOWN_TRANSCRIPT			Predicted		1	Samandi2017
143360	ENSMUST00000072080	Lrrc40-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse

1171365

123

GTG...

VMP...

GTG

Alternative
Downstream
NMD
sORF

MEF, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
138465	ENSMUST00000150525	Lrrc40-205	nonsense_mediated_decay	Ribo-seq	moderate	2	sORFs_org_Mouse
52140	ENSMUST00000131518	Lrrc40-203	nonsense_mediated_decay	Ribo-seq	moderate	1	sORFs_org_Mouse

1649628

CTG...

LNI...

CTG

Alternative
Downstream
NMD
sORF

MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
138465	ENSMUST00000150525	Lrrc40-205	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

749936

ATG...

MEI...

ATG

Alternative
Downstream
NMD
sORF

E14, 3T3, Glioma,
Liver, MEF, MESC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
138465	ENSMUST00000150525	Lrrc40-205	nonsense_mediated_decay	Ribo-seq	moderate	1	sORFs_org_Mouse
127997	ENSMUST00000156597	Lrrc40-206	nonsense_mediated_decay	Ribo-seq	moderate	2	sORFs_org_Mouse Johnstone2016

54490

CTG...

LTK...

CTG

InCDS
NMD
Overlapping
sORF

Brain, E14, MEF,
v6-5, Testis, R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
138465	ENSMUST00000150525	Lrrc40-205	nonsense_mediated_decay	Ribo-seq		5	sORFs_org_Mouse
52140	ENSMUST00000131518	Lrrc40-203	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse
126647	ENSMUST00000123028	Lrrc40-202	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse
127997	ENSMUST00000156597	Lrrc40-206	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

136949

111

GTG...

VDP...

GTG

Intronic
sORF
Alternative
Downstream
NMD

Spleen_B_cell, 3T3, E14,
MEF, Neutrophil, v6-5,
Brain, R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
138759	ENSMUST00000199290	Lrrc40-207	retained_intron	Ribo-seq	moderate	1	sORFs_org_Mouse
138465	ENSMUST00000150525	Lrrc40-205	nonsense_mediated_decay	Ribo-seq		5	sORFs_org_Mouse
127997	ENSMUST00000156597	Lrrc40-206	nonsense_mediated_decay	Ribo-seq		3	sORFs_org_Mouse

53947

TTG...

LLS...

TTG

Alternative
Downstream
NMD
sORF

E14, Liver, MEF,
v6-5, Brain, Testis,
3T3, R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
138465	ENSMUST00000150525	Lrrc40-205	nonsense_mediated_decay	Ribo-seq		4	sORFs_org_Mouse
126647	ENSMUST00000123028	Lrrc40-202	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse
52140	ENSMUST00000131518	Lrrc40-203	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse
127997	ENSMUST00000156597	Lrrc40-206	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse

1175154

ATG...

MTS...

ATG

Alternative
InCDS
Overlapping
sORF

E14, R1E, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
143360	ENSMUST00000072080	Lrrc40-201	protein_coding	Ribo-seq		4	sORFs_org_Mouse

1175824

TTG...

LMP...

TTG

Alternative
InCDS
Overlapping
sORF

v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
143360	ENSMUST00000072080	Lrrc40-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse

504549

ATG...

MWT...

ATG

Alternative
InCDS
NMD
Overlapping
sORF

3T3, B_cell, R1E,
MEF, E14, Spleen_B_cell,
NSC, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
127997	ENSMUST00000156597	Lrrc40-206	nonsense_mediated_decay	Ribo-seq		3	sORFs_org_Mouse
52140	ENSMUST00000131518	Lrrc40-203	nonsense_mediated_decay	Ribo-seq	weak	2	sORFs_org_Mouse
503081	ENSMUST00000200540	Lrrc40-208	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse
138465	ENSMUST00000150525	Lrrc40-205	nonsense_mediated_decay	Ribo-seq	weak	3	sORFs_org_Mouse

749501

ATG...

MVG...

ATG

Alternative
InCDS
NMD
Overlapping
sORF

E14, MEF, 3T3,
R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
138465	ENSMUST00000150525	Lrrc40-205	nonsense_mediated_decay	Ribo-seq	strong	3	sORFs_org_Mouse
127997	ENSMUST00000156597	Lrrc40-206	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse
503081	ENSMUST00000200540	Lrrc40-208	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

1170959

GTG...

VKP...

GTG

Alternative
Downstream
NMD
sORF

v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
138465	ENSMUST00000150525	Lrrc40-205	nonsense_mediated_decay	Ribo-seq	weak	1	sORFs_org_Mouse

134372

TTG...

LKF...

TTG

Downstream
NMD
sORF

E14, Brain, R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
138465	ENSMUST00000150525	Lrrc40-205	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse
127997	ENSMUST00000156597	Lrrc40-206	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse

52296

CTG...

LNT...

CTG

Intronic
sORF
Alternative
Downstream
NMD

Testis, E14, Liver,
MEF, Neutrophil, v6-5,
Spleen_B_cell, 3T3, Brain,
R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
52113	ENSMUST00000132530	Lrrc40-204	retained_intron	Ribo-seq		1	sORFs_org_Mouse
138465	ENSMUST00000150525	Lrrc40-205	nonsense_mediated_decay	Ribo-seq		5	sORFs_org_Mouse
138759	ENSMUST00000199290	Lrrc40-207	retained_intron	Ribo-seq	moderate	1	sORFs_org_Mouse
127997	ENSMUST00000156597	Lrrc40-206	nonsense_mediated_decay	Ribo-seq		4	sORFs_org_Mouse

127276

TTG...

LPA...

TTG

Alternative
Downstream
NMD
sORF

R1E, Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
127997	ENSMUST00000156597	Lrrc40-206	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse
126647	ENSMUST00000123028	Lrrc40-202	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

52450

CTG...

LEY...

CTG

Downstream
NMD
sORF
Intronic

R1E, Testis, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
127997	ENSMUST00000156597	Lrrc40-206	nonsense_mediated_decay	Ribo-seq	strong	1	sORFs_org_Mouse
52113	ENSMUST00000132530	Lrrc40-204	retained_intron	Ribo-seq	strong	1	sORFs_org_Mouse
138465	ENSMUST00000150525	Lrrc40-205	nonsense_mediated_decay	Ribo-seq	strong	1	sORFs_org_Mouse

137907

TTG...

LER...

TTG

Downstream
NMD
sORF

Brain, E14, MEF,
Neutrophil, Spleen_B_cell, v6-5,
3T3, R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
138465	ENSMUST00000150525	Lrrc40-205	nonsense_mediated_decay	Ribo-seq		7	sORFs_org_Mouse
127997	ENSMUST00000156597	Lrrc40-206	nonsense_mediated_decay	Ribo-seq		3	sORFs_org_Mouse

139051

TTG...

LPE...

TTG

Intronic
sORF
Alternative
Downstream
NMD

Spleen_B_cell, 3T3, Brain,
R1E, E14, Liver,
MEF, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
52113	ENSMUST00000132530	Lrrc40-204	retained_intron	Ribo-seq		1	sORFs_org_Mouse
127997	ENSMUST00000156597	Lrrc40-206	nonsense_mediated_decay	Ribo-seq		3	sORFs_org_Mouse
138465	ENSMUST00000150525	Lrrc40-205	nonsense_mediated_decay	Ribo-seq		4	sORFs_org_Mouse

1223899

ATC...

IFP...

ATC

Alternative
InCDS
Overlapping
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
143360	ENSMUST00000072080	Lrrc40-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse

1171032

ATG...

MTS...

ATG

NMD
sORF
Alternative
InCDS
Overlapping

E14, Brain, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
503081	ENSMUST00000200540	Lrrc40-208	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse
138465	ENSMUST00000150525	Lrrc40-205	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse

54713

TTG...

LRL...

TTG

NMD
sORF
Alternative
Downstream

Brain, 3T3, R1E,
E14, Liver, v6-5,
Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
126647	ENSMUST00000123028	Lrrc40-202	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse
127997	ENSMUST00000156597	Lrrc40-206	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse
138465	ENSMUST00000150525	Lrrc40-205	nonsense_mediated_decay	Ribo-seq		3	sORFs_org_Mouse
52140	ENSMUST00000131518	Lrrc40-203	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

138758

TTG...

LQI...

TTG

Intronic
sORF
Alternative
Downstream
NMD

Brain, Spleen_B_cell, 3T3,
MEF, R1E, Neutrophil,
v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
138759	ENSMUST00000199290	Lrrc40-207	retained_intron	Ribo-seq	weak	2	sORFs_org_Mouse
127997	ENSMUST00000156597	Lrrc40-206	nonsense_mediated_decay	Ribo-seq		3	sORFs_org_Mouse
138465	ENSMUST00000150525	Lrrc40-205	nonsense_mediated_decay	Ribo-seq		3	sORFs_org_Mouse

54281

CTG...

LLR...

CTG

NMD
sORF
Alternative
Downstream

Brain, E14, Liver,
v6-5, Testis, 3T3,
R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
126647	ENSMUST00000123028	Lrrc40-202	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse
138465	ENSMUST00000150525	Lrrc40-205	nonsense_mediated_decay	Ribo-seq		3	sORFs_org_Mouse
52140	ENSMUST00000131518	Lrrc40-203	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse
127997	ENSMUST00000156597	Lrrc40-206	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse

138114

CTG...

LEL...

CTG

Downstream
NMD
sORF

E14, v6-5, 3T3,
Brain, R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
138465	ENSMUST00000150525	Lrrc40-205	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse
127997	ENSMUST00000156597	Lrrc40-206	nonsense_mediated_decay	Ribo-seq		3	sORFs_org_Mouse

1171327

102

CTG...

LCL...

CTG

Alternative
Downstream
NMD
sORF

v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
138465	ENSMUST00000150525	Lrrc40-205	nonsense_mediated_decay	Ribo-seq	moderate	1	sORFs_org_Mouse

127996

CTG...

LTK...

CTG

Alternative
Downstream
NMD
sORF
Intronic

E14, Liver, MEF,
v6-5, Spleen_B_cell, 3T3,
Brain, R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
138465	ENSMUST00000150525	Lrrc40-205	nonsense_mediated_decay	Ribo-seq		4	sORFs_org_Mouse
138759	ENSMUST00000199290	Lrrc40-207	retained_intron	Ribo-seq		1	sORFs_org_Mouse
127997	ENSMUST00000156597	Lrrc40-206	nonsense_mediated_decay	Ribo-seq		3	sORFs_org_Mouse

130375

126

CTG...

LET...

CTG

Downstream
NMD
sORF

3T3, Brain, R1E,
E14, MEF, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
127997	ENSMUST00000156597	Lrrc40-206	nonsense_mediated_decay	Ribo-seq		3	sORFs_org_Mouse
138465	ENSMUST00000150525	Lrrc40-205	nonsense_mediated_decay	Ribo-seq		3	sORFs_org_Mouse

1646051

CTG...

LRK...

CTG

Alternative
Downstream
NMD
sORF

MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
127997	ENSMUST00000156597	Lrrc40-206	nonsense_mediated_decay	Ribo-seq	weak	2	sORFs_org_Mouse
138465	ENSMUST00000150525	Lrrc40-205	nonsense_mediated_decay	Ribo-seq	weak	1	sORFs_org_Mouse

53978

CTG...

LSS...

CTG

NMD
sORF
Alternative
Downstream

Brain, 3T3, R1E,
Testis, E14, Liver,
v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
126647	ENSMUST00000123028	Lrrc40-202	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse
127997	ENSMUST00000156597	Lrrc40-206	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse
52140	ENSMUST00000131518	Lrrc40-203	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse
138465	ENSMUST00000150525	Lrrc40-205	nonsense_mediated_decay	Ribo-seq		3	sORFs_org_Mouse

52695

183

GTG...

VFP...

GTG

Alternative
Downstream
NMD
sORF
Intronic

E14, Liver, MEF,
Neutrophil, v6-5, Testis,
Spleen_B_cell, 3T3, Brain,
R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
138465	ENSMUST00000150525	Lrrc40-205	nonsense_mediated_decay	Ribo-seq		6	sORFs_org_Mouse
52113	ENSMUST00000132530	Lrrc40-204	retained_intron	Ribo-seq		1	sORFs_org_Mouse
138759	ENSMUST00000199290	Lrrc40-207	retained_intron	Ribo-seq	moderate	1	sORFs_org_Mouse
127997	ENSMUST00000156597	Lrrc40-206	nonsense_mediated_decay	Ribo-seq		4	sORFs_org_Mouse

1173128

ATG...

MWV...

ATG

Alternative
Downstream
NMD
sORF

v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
138465	ENSMUST00000150525	Lrrc40-205	nonsense_mediated_decay	Ribo-seq	weak	1	sORFs_org_Mouse

1375811

108

CTG...

LPC...

CTG

Downstream
NMD
sORF

R1E, E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
127997	ENSMUST00000156597	Lrrc40-206	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse
138465	ENSMUST00000150525	Lrrc40-205	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

138709

126

CTG...

LQA...

CTG

Downstream
NMD
sORF

3T3, Brain, R1E,
E14, MEF, Neutrophil,
v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
127997	ENSMUST00000156597	Lrrc40-206	nonsense_mediated_decay	Ribo-seq		3	sORFs_org_Mouse
138465	ENSMUST00000150525	Lrrc40-205	nonsense_mediated_decay	Ribo-seq		4	sORFs_org_Mouse

128495

CTG...

LTS...

CTG

InCDS
NMD
Overlapping
sORF

3T3, R1E, Brain,
E14, Liver, MEF,
Neutrophil, v6-5, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
127997	ENSMUST00000156597	Lrrc40-206	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse
138465	ENSMUST00000150525	Lrrc40-205	nonsense_mediated_decay	Ribo-seq		6	sORFs_org_Mouse
503081	ENSMUST00000200540	Lrrc40-208	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse
126647	ENSMUST00000123028	Lrrc40-202	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

1175772

ATG...

MLA...

ATG

Alternative
InCDS
Overlapping
sORF
Downstream
NMD

E14, MEF, v6-5,
Glioma, Liver, MESC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
143360	ENSMUST00000072080	Lrrc40-201	protein_coding	Ribo-seq		3	sORFs_org_Mouse
127997	ENSMUST00000156597	Lrrc40-206	nonsense_mediated_decay	Ribo-seq		1	Johnstone2016

539952

GTG...

VGS...

GTG

Alternative
InCDS
NMD
Overlapping
sORF

3T3, R1E, E14,
MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
127997	ENSMUST00000156597	Lrrc40-206	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse
138465	ENSMUST00000150525	Lrrc40-205	nonsense_mediated_decay	Ribo-seq	strong	2	sORFs_org_Mouse

503014

ATG...

MIE...

ATG

Alternative
Downstream
NMD
sORF

Spleen_B_cell, 3T3, Glioma,
Liver, MEF, MESC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
138465	ENSMUST00000150525	Lrrc40-205	nonsense_mediated_decay	Ribo-seq	moderate	1	sORFs_org_Mouse
127997	ENSMUST00000156597	Lrrc40-206	nonsense_mediated_decay	Ribo-seq	moderate	2	sORFs_org_Mouse Johnstone2016

54778

CTG...

LME...

CTG

Intronic
sORF
Alternative
Downstream
NMD

Testis, E14, Liver,
MEF, Neutrophil, v6-5,
3T3, Brain, R1E,
Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
52113	ENSMUST00000132530	Lrrc40-204	retained_intron	Ribo-seq		1	sORFs_org_Mouse
138465	ENSMUST00000150525	Lrrc40-205	nonsense_mediated_decay	Ribo-seq		6	sORFs_org_Mouse
127997	ENSMUST00000156597	Lrrc40-206	nonsense_mediated_decay	Ribo-seq		4	sORFs_org_Mouse
138759	ENSMUST00000199290	Lrrc40-207	retained_intron	Ribo-seq	moderate	2	sORFs_org_Mouse

1647460

CTG...

LSL...

CTG

Alternative
Downstream
NMD
sORF

MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
138465	ENSMUST00000150525	Lrrc40-205	nonsense_mediated_decay	Ribo-seq	moderate	1	sORFs_org_Mouse
127997	ENSMUST00000156597	Lrrc40-206	nonsense_mediated_decay	Ribo-seq	moderate	2	sORFs_org_Mouse

540919

ATG...

MTF...

ATG

Alternative
Downstream
NMD
sORF
InCDS
Overlapping

Glioma, Liver, MEF,
MESC, 3T3, E14,
v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
127997	ENSMUST00000156597	Lrrc40-206	nonsense_mediated_decay	Ribo-seq		1	Johnstone2016
143360	ENSMUST00000072080	Lrrc40-201	protein_coding	Ribo-seq		4	sORFs_org_Mouse

1175716

CTG...

LMT...

CTG

Alternative
InCDS
Overlapping
sORF

E14, MEF, R1E,
v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
143360	ENSMUST00000072080	Lrrc40-201	protein_coding	Ribo-seq		4	sORFs_org_Mouse

817990

TTG...

LTL...

TTG

Alternative
InCDS
NMD
Overlapping
sORF

Brain, B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
138465	ENSMUST00000150525	Lrrc40-205	nonsense_mediated_decay	Ribo-seq	moderate	1	sORFs_org_Mouse
127997	ENSMUST00000156597	Lrrc40-206	nonsense_mediated_decay	Ribo-seq	moderate	1	sORFs_org_Mouse

52936

CTG...

LLD...

CTG

Downstream
NMD
sORF
Intronic

E14, Liver, MEF,
v6-5, Testis, Brain,
R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
138465	ENSMUST00000150525	Lrrc40-205	nonsense_mediated_decay	Ribo-seq	weak	4	sORFs_org_Mouse
52113	ENSMUST00000132530	Lrrc40-204	retained_intron	Ribo-seq	weak	1	sORFs_org_Mouse
127997	ENSMUST00000156597	Lrrc40-206	nonsense_mediated_decay	Ribo-seq	weak	2	sORFs_org_Mouse

1174932

ATG...

MIL...

ATG

Alternative
Downstream
NMD
sORF
InCDS
Overlapping

Glioma, Liver, MEF,
MESC, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
127997	ENSMUST00000156597	Lrrc40-206	nonsense_mediated_decay	Ribo-seq		1	Johnstone2016
143360	ENSMUST00000072080	Lrrc40-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse

138464

CTG...

LLQ...

CTG

Downstream
NMD
sORF

3T3, R1E, Brain,
E14, MEF, Neutrophil,
v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
127997	ENSMUST00000156597	Lrrc40-206	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse
138465	ENSMUST00000150525	Lrrc40-205	nonsense_mediated_decay	Ribo-seq		5	sORFs_org_Mouse

136159

TTG...

LLY...

TTG

Downstream
NMD
sORF

3T3, Brain, R1E,
E14, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
127997	ENSMUST00000156597	Lrrc40-206	nonsense_mediated_decay	Ribo-seq		3	sORFs_org_Mouse
138465	ENSMUST00000150525	Lrrc40-205	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse

128204

CTG...

LAL...

CTG

Downstream
NMD
sORF

E14, Brain, R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
138465	ENSMUST00000150525	Lrrc40-205	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse
127997	ENSMUST00000156597	Lrrc40-206	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse

751530

CTG...

LKF...

CTG

Alternative
Downstream
NMD
sORF

3T3, MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
127997	ENSMUST00000156597	Lrrc40-206	nonsense_mediated_decay	Ribo-seq	weak	3	sORFs_org_Mouse
138465	ENSMUST00000150525	Lrrc40-205	nonsense_mediated_decay	Ribo-seq	weak	1	sORFs_org_Mouse

1376219

CTG...

LLI...

CTG

Alternative
InCDS
Overlapping
sORF

E14, R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
143360	ENSMUST00000072080	Lrrc40-201	protein_coding	Ribo-seq		2	sORFs_org_Mouse

139126

CTG...

LRS...

CTG

Downstream
NMD
sORF

3T3, Brain, R1E,
E14, MEF, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
127997	ENSMUST00000156597	Lrrc40-206	nonsense_mediated_decay	Ribo-seq		3	sORFs_org_Mouse
138465	ENSMUST00000150525	Lrrc40-205	nonsense_mediated_decay	Ribo-seq		4	sORFs_org_Mouse

129020

CTG...

LMT...

CTG

NMD
sORF
Alternative
InCDS
Overlapping

Brain, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
126647	ENSMUST00000123028	Lrrc40-202	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse
138465	ENSMUST00000150525	Lrrc40-205	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

539026

GTG...

VFY...

GTG

Alternative
Downstream
NMD
sORF

3T3

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
127997	ENSMUST00000156597	Lrrc40-206	nonsense_mediated_decay	Ribo-seq	weak	1	sORFs_org_Mouse

52707

150

CTG...

LEA...

CTG

Intronic
sORF
Alternative
Downstream
NMD

Spleen_B_cell, 3T3, Brain,
MEF, R1E, E14,
Liver, Neutrophil, v6-5,
Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
138759	ENSMUST00000199290	Lrrc40-207	retained_intron	Ribo-seq	strong	1	sORFs_org_Mouse
127997	ENSMUST00000156597	Lrrc40-206	nonsense_mediated_decay	Ribo-seq		4	sORFs_org_Mouse
138465	ENSMUST00000150525	Lrrc40-205	nonsense_mediated_decay	Ribo-seq		6	sORFs_org_Mouse
52113	ENSMUST00000132530	Lrrc40-204	retained_intron	Ribo-seq		1	sORFs_org_Mouse

139774

147

TTG...

LDC...

TTG

Downstream
NMD
sORF

Brain, MEF, R1E,
3T3, E14, Neutrophil,
v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
127997	ENSMUST00000156597	Lrrc40-206	nonsense_mediated_decay	Ribo-seq		3	sORFs_org_Mouse
138465	ENSMUST00000150525	Lrrc40-205	nonsense_mediated_decay	Ribo-seq		5	sORFs_org_Mouse

1175694

CTG...

LMT...

CTG

Alternative
InCDS
Overlapping
sORF

E14, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
143360	ENSMUST00000072080	Lrrc40-201	protein_coding	Ribo-seq		2	sORFs_org_Mouse

1172708

CTG...

LMW...

CTG

Alternative
Downstream
NMD
sORF

v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
138465	ENSMUST00000150525	Lrrc40-205	nonsense_mediated_decay	Ribo-seq	weak	1	sORFs_org_Mouse

1220005

201

AAG...

KAA...

AAG

NMD
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
503081	ENSMUST00000200540	Lrrc40-208	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

138825

CTG...

LKN...

CTG

Alternative
Downstream
NMD
sORF

E14, v6-5, R1E,
Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
138465	ENSMUST00000150525	Lrrc40-205	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse
127997	ENSMUST00000156597	Lrrc40-206	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse
126647	ENSMUST00000123028	Lrrc40-202	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

143359

TTG...

LGT...

TTG

Alternative
InCDS
Overlapping
sORF

3T3, Brain, MEF,
Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
143360	ENSMUST00000072080	Lrrc40-201	protein_coding	Ribo-seq		5	sORFs_org_Mouse

Export data