Gene NCBI:66656 | MetamORF

Gene

ID CARD

NCBI:66656

Aliases

Eef1d
EF-1-delta, ENSMUSG00000055762, MGI:1913906
NCBI:66656, OFF:Eef1d

Chromosome

Transcripts

38 ORFs
14 known transcripts
139 ORF to known transcript associations

MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

ORFs

Display all the transcripts related to the entry.

358184

ENSMUST00000023235

Eef1d-201

protein_coding

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
471239	51	CTG ...	LSS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF	Spleen_B_cell
11558	33	ATG ...	MMQ ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	sORF	Spleen_B_cell
11633	30	ATG ...	MQK ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	sORF	Spleen_B_cell
470981	30	TTG ...	LVA ...	Ribo-seq	TTG		1	sORFs_org_Mouse	sORF	Spleen_B_cell
11359	36	ATG ...	MMM ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	sORF	Brain, Spleen_B_cell
31422	51	TTG ...	LTS ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	sORF	Spleen_B_cell

469445

ENSMUST00000154584

Eef1d-218

protein_coding

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
31743	72	GTG ...	VWW ...	Ribo-seq	GTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, Neutrophil, R1E, Spleen_B_cell
791646	183	TTG ...	LAM ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	MEF
11633	30	ATG ...	MQK ...	Ribo-seq	ATG	moderate	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, Neutrophil, NSC, R1E
975998	162	ATG ...	MRT ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
11359	36	ATG ...	MMM ...	Ribo-seq	ATG	moderate	7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, Neutrophil, NSC, R1E, v6-5
31685	108	CTG ...	LLA ...	Ribo-seq	CTG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, Neutrophil, R1E, Spleen_B_cell
472160	75	TTG ...	LGG ...	Ribo-seq	TTG	strong	5	sORFs_org_Mouse	InCDS Overlapping sORF	E14, MEF, R1E, Spleen_B_cell
1145783	240	GTG ...	VCV ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	MEF
471239	51	CTG ...	LSS ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Alternative sORF Upstream	E14, Liver, MEF, R1E
470981	30	TTG ...	LVA ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative sORF Upstream	MEF
31422	51	TTG ...	LTS ...	Ribo-seq	TTG	moderate	7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, Neutrophil, NSC, R1E, v6-5
30783	105	TTG ...	LAM ...	Ribo-seq	TTG		7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, Neutrophil, R1E, Spleen_B_cell
32020	162	GTG ...	VCV ...	Ribo-seq	GTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, Neutrophil, R1E, Spleen_B_cell
472786	192	TTG ...	LCL ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	E14, MEF, Spleen_B_cell
32163	114	TTG ...	LCL ...	Ribo-seq	TTG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, Neutrophil, R1E, Spleen_B_cell
11408	108	TTG ...	LCA ...	Ribo-seq	TTG	moderate	5	sORFs_org_Mouse	InCDS Overlapping sORF	E14, MEF, R1E, Spleen_B_cell
31352	60	ATG ...	MTK ...	Ribo-seq	ATG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, Neutrophil, R1E, Spleen_B_cell
360982	66	ATG ...	MRR ...	Ribo-seq	ATG	weak	7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, Neutrophil, NSC, R1E, v6-5
791194	186	CTG ...	LLA ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	E14, MEF
31602	99	ATG ...	MAS ...	Ribo-seq	ATG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, Neutrophil, R1E, Spleen_B_cell
11558	33	ATG ...	MMQ ...	Ribo-seq	ATG	moderate	7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, Neutrophil, NSC, R1E, v6-5

30784

ENSMUST00000134222

Eef1d-211

retained_intron

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
31352	60	ATG ...	MTK ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Intronic sORF	Testis
31743	72	GTG ...	VWW ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Testis
32020	162	GTG ...	VCV ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Testis
32322	219	CTG ...	LVW ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Testis
31602	99	ATG ...	MAS ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Intronic sORF	Testis
31107	195	GTG ...	VPV ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Testis
32163	114	TTG ...	LCL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	Testis
31685	108	CTG ...	LLA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Testis
32393	243	GTG ...	VRS ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Testis
30783	105	TTG ...	LAM ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	Testis
31098	228	TTG ...	LDG ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	Testis

681698

ENSMUST00000109972

Eef1d-205

protein_coding

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
31422	51	TTG ...	LTS ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
471239	51	CTG ...	LSS ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative sORF Upstream	3T3, BMDC
470981	30	TTG ...	LVA ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative sORF Upstream	BMDC
791194	186	CTG ...	LLA ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	B_cell, v6-5
472786	192	TTG ...	LCL ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	B_cell, v6-5
11408	108	TTG ...	LCA ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	3T3
30783	105	TTG ...	LAM ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell
32020	162	GTG ...	VCV ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell
472160	75	TTG ...	LGG ...	Ribo-seq	TTG	strong	2	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell
1145130	138	ATG ...	MTK ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	v6-5
11359	36	ATG ...	MMM ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
1145783	240	GTG ...	VCV ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	v6-5
32163	114	TTG ...	LCL ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell
31743	72	GTG ...	VWW ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell
11633	30	ATG ...	MQK ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
31602	99	ATG ...	MAS ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell
791563	177	ATG ...	MAS ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	B_cell, v6-5
11558	33	ATG ...	MMQ ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC
31352	60	ATG ...	MTK ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell
791646	183	TTG ...	LAM ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	B_cell, v6-5
31685	108	CTG ...	LLA ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell

31423

ENSMUST00000089680

Eef1d-203

protein_coding

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
11359	36	ATG ...	MMM ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Testis
11558	33	ATG ...	MMQ ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Testis
471239	51	CTG ...	LSS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative sORF Upstream	v6-5
31743	72	GTG ...	VWW ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver, v6-5
32020	162	GTG ...	VCV ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	v6-5
31422	51	TTG ...	LTS ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Testis
11633	30	ATG ...	MQK ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Testis, v6-5
30783	105	TTG ...	LAM ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	v6-5
472160	75	TTG ...	LGG ...	Ribo-seq	TTG	strong	1	sORFs_org_Mouse	InCDS Overlapping sORF	v6-5
32163	114	TTG ...	LCL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	v6-5
31685	108	CTG ...	LLA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	v6-5
31352	60	ATG ...	MTK ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	v6-5
31602	99	ATG ...	MAS ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	v6-5
470981	30	TTG ...	LVA ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative sORF Upstream	v6-5
11408	108	TTG ...	LCA ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	v6-5

421711

ENSMUST00000089681

Eef1d-204

protein_coding

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1184612	192	ACG ...	TMR ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
11359	36	ATG ...	MMM ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, MEF
1181657	159	AGG ...	RTR ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
31352	60	ATG ...	MTK ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14, MEF
30783	105	TTG ...	LAM ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14, MEF
421710	66	CTG ...	LSS ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	B_cell, C2C12, Liver, MEF
32020	162	GTG ...	VCV ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14, MEF
32163	114	TTG ...	LCL ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, MEF
11633	30	ATG ...	MQK ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, MEF
360982	66	ATG ...	MRR ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, MEF
1184421	186	AGG ...	RTR ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
31422	51	TTG ...	LTS ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, MEF
31602	99	ATG ...	MAS ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14, MEF
31685	108	CTG ...	LLA ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, MEF
31743	72	GTG ...	VWW ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, MEF
1181315	165	ACG ...	TMR ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
11408	108	TTG ...	LCA ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
11558	33	ATG ...	MMQ ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14, MEF
472160	75	TTG ...	LGG ...	Ribo-seq	TTG	strong	1	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
1179981	33	AGG ...	RRR ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
471239	51	CTG ...	LSS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative sORF Upstream	E14

359799

ENSMUST00000129800

Eef1d-210

retained_intron

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
31422	51	TTG ...	LTS ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Intronic sORF	Brain, Liver
11558	33	ATG ...	MMQ ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Intronic sORF	Brain, Liver
11359	36	ATG ...	MMM ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Intronic sORF	Liver
11633	30	ATG ...	MQK ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Intronic sORF	Brain, Liver

3019614

UNKNOWN_TRANSCRIPT

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
791563	177	ATG ...	MAS ...	Predicted	ATG		1	Samandi2017	sORF

11409

ENSMUST00000137426

Eef1d-212

protein_coding

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
30783	105	TTG ...	LAM ...	Ribo-seq	TTG		1	sORFs_org_Mouse	sORF	Brain
11408	108	TTG ...	LCA ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	sORF	Brain, Skin_tumor
32163	114	TTG ...	LCL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	sORF	Brain
31422	51	TTG ...	LTS ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	sORF	Brain
472160	75	TTG ...	LGG ...	Ribo-seq	TTG	strong	1	sORFs_org_Mouse	sORF	Brain
32020	162	GTG ...	VCV ...	Ribo-seq	GTG		1	sORFs_org_Mouse	sORF	Brain
31685	108	CTG ...	LLA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF	Brain
31602	99	ATG ...	MAS ...	Ribo-seq	ATG		1	sORFs_org_Mouse	sORF	Brain

850692

ENSMUST00000109975

Eef1d-206

protein_coding

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
31352	60	ATG ...	MTK ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver, MEF
30783	105	TTG ...	LAM ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver, MEF
1676204	150	GTG ...	VWW ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	MEF
1700790	75	GTG ...	VST ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	MEF
31685	108	CTG ...	LLA ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver, MEF
472786	192	TTG ...	LCL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	MEF
32163	114	TTG ...	LCL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver
791194	186	CTG ...	LLA ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	MEF
11408	108	TTG ...	LCA ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
791563	177	ATG ...	MAS ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	E14, MEF
791646	183	TTG ...	LAM ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	E14, MEF
472160	75	TTG ...	LGG ...	Ribo-seq	TTG	strong	1	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
31602	99	ATG ...	MAS ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver, MEF
1185179	111	AGG ...	RRR ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	E14
1145783	240	GTG ...	VCV ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	E14, MEF
1145130	138	ATG ...	MTK ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	E14, MEF
32020	162	GTG ...	VCV ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver

2789611

ENSMUST00000151066

Eef1d-217

protein_coding

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

360982

ATG ...

MRR ...

Ribo-seq

ATG

weak

Johnstone2016

Glioma, Liver, MEF,
MESC

791563

177

ATG ...

MAS ...

Ribo-seq

ATG

Johnstone2016

Glioma, Liver, MEF,
MESC

1676019

ENSMUST00000144614

Eef1d-215

protein_coding

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
11359	36	ATG ...	MMM ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	sORF	MEF
11633	30	ATG ...	MQK ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	sORF	MEF
31422	51	TTG ...	LTS ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	sORF	MEF
360982	66	ATG ...	MRR ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	sORF	MEF
11558	33	ATG ...	MMQ ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	sORF	MEF

1180834

ENSMUST00000141475

Eef1d-214

protein_coding

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1180833	60	CTG ...	LRR ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	sORF	E14

1044000

ENSMUST00000145764

Eef1d-216

protein_coding

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
471239	51	CTG ...	LSS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF	Neutrophil
1145243	30	TTG ...	LVA ...	Ribo-seq	TTG		2	sORFs_org_Mouse	sORF	MEF, v6-5

11360

ENSMUST00000123712

Eef1d-208

protein_coding

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
31422	51	TTG ...	LTS ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	sORF	B_cell, Liver
11359	36	ATG ...	MMM ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse	sORF	B_cell, Liver, Skin_tumor
11633	30	ATG ...	MQK ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse	sORF	B_cell, Liver, Skin_tumor
11558	33	ATG ...	MMQ ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse	sORF	B_cell, Liver, Skin_tumor
360982	66	ATG ...	MRR ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	sORF	Brain, Liver

ORFs

38 ORFs
14 known transcripts
139 ORF to known transcript associations

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF Length

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Start codon

The start codon sequence of the ORF.

ORF annotations

A comma-separated list of all the annotations computed by our algorithm for the ORF. This list includes the annotations computed for the ORF for all transcripts. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of all the cell types in which the ORF has already been identified.

Transcripts

Display all the transcripts related to the entry.

471239

CTG...

LSS...

CTG

sORF
Alternative
Upstream

Spleen_B_cell, 3T3, BMDC,
v6-5, Neutrophil, E14,
Liver, MEF, R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
358184	ENSMUST00000023235	Eef1d-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse
681698	ENSMUST00000109972	Eef1d-205	protein_coding	Ribo-seq		2	sORFs_org_Mouse
31423	ENSMUST00000089680	Eef1d-203	protein_coding	Ribo-seq		1	sORFs_org_Mouse
1044000	ENSMUST00000145764	Eef1d-216	protein_coding	Ribo-seq		1	sORFs_org_Mouse
469445	ENSMUST00000154584	Eef1d-218	protein_coding	Ribo-seq		5	sORFs_org_Mouse
421711	ENSMUST00000089681	Eef1d-204	protein_coding	Ribo-seq		1	sORFs_org_Mouse

31743

GTG...

VWW...

GTG

Alternative
InCDS
Overlapping
sORF
Intronic

E14, MEF, Neutrophil,
R1E, Spleen_B_cell, Testis,
Liver, v6-5, 3T3,
B_cell, BMDC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
469445	ENSMUST00000154584	Eef1d-218	protein_coding	Ribo-seq		5	sORFs_org_Mouse
30784	ENSMUST00000134222	Eef1d-211	retained_intron	Ribo-seq		1	sORFs_org_Mouse
31423	ENSMUST00000089680	Eef1d-203	protein_coding	Ribo-seq		2	sORFs_org_Mouse
681698	ENSMUST00000109972	Eef1d-205	protein_coding	Ribo-seq		2	sORFs_org_Mouse
421711	ENSMUST00000089681	Eef1d-204	protein_coding	Ribo-seq		2	sORFs_org_Mouse

31352

ATG...

MTK...

ATG

Intronic
sORF
Alternative
InCDS
Overlapping

Testis, Liver, MEF,
BMDC, E14, Neutrophil,
R1E, Spleen_B_cell, 3T3,
B_cell, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
30784	ENSMUST00000134222	Eef1d-211	retained_intron	Ribo-seq		1	sORFs_org_Mouse
850692	ENSMUST00000109975	Eef1d-206	protein_coding	Ribo-seq		2	sORFs_org_Mouse
421711	ENSMUST00000089681	Eef1d-204	protein_coding	Ribo-seq		3	sORFs_org_Mouse
469445	ENSMUST00000154584	Eef1d-218	protein_coding	Ribo-seq		5	sORFs_org_Mouse
681698	ENSMUST00000109972	Eef1d-205	protein_coding	Ribo-seq		2	sORFs_org_Mouse
31423	ENSMUST00000089680	Eef1d-203	protein_coding	Ribo-seq		1	sORFs_org_Mouse

31422

TTG...

LTS...

TTG

Alternative
InCDS
Overlapping
sORF
Intronic

3T3, Brain, Liver,
BMDC, MEF, B_cell,
E14, Neutrophil, NSC,
R1E, v6-5, Testis,
Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
681698	ENSMUST00000109972	Eef1d-205	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse
359799	ENSMUST00000129800	Eef1d-210	retained_intron	Ribo-seq	moderate	2	sORFs_org_Mouse
11409	ENSMUST00000137426	Eef1d-212	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse
421711	ENSMUST00000089681	Eef1d-204	protein_coding	Ribo-seq	moderate	2	sORFs_org_Mouse
11360	ENSMUST00000123712	Eef1d-208	protein_coding	Ribo-seq	moderate	2	sORFs_org_Mouse
469445	ENSMUST00000154584	Eef1d-218	protein_coding	Ribo-seq	moderate	7	sORFs_org_Mouse
1676019	ENSMUST00000144614	Eef1d-215	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse
31423	ENSMUST00000089680	Eef1d-203	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse
358184	ENSMUST00000023235	Eef1d-201	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse

11359

ATG...

MMM...

ATG

Alternative
InCDS
Overlapping
sORF
Intronic

Testis, E14, MEF,
Neutrophil, NSC, R1E,
v6-5, BMDC, B_cell,
Liver, Skin_tumor, 3T3,
Brain, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
31423	ENSMUST00000089680	Eef1d-203	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse
469445	ENSMUST00000154584	Eef1d-218	protein_coding	Ribo-seq	moderate	7	sORFs_org_Mouse
421711	ENSMUST00000089681	Eef1d-204	protein_coding	Ribo-seq	moderate	2	sORFs_org_Mouse
1676019	ENSMUST00000144614	Eef1d-215	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse
11360	ENSMUST00000123712	Eef1d-208	protein_coding	Ribo-seq	moderate	3	sORFs_org_Mouse
681698	ENSMUST00000109972	Eef1d-205	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse
359799	ENSMUST00000129800	Eef1d-210	retained_intron	Ribo-seq	moderate	1	sORFs_org_Mouse
358184	ENSMUST00000023235	Eef1d-201	protein_coding	Ribo-seq	moderate	2	sORFs_org_Mouse

470981

TTG...

LVA...

TTG

Alternative
sORF
Upstream

BMDC, Spleen_B_cell, MEF,
v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
681698	ENSMUST00000109972	Eef1d-205	protein_coding	Ribo-seq		1	sORFs_org_Mouse
358184	ENSMUST00000023235	Eef1d-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse
469445	ENSMUST00000154584	Eef1d-218	protein_coding	Ribo-seq		1	sORFs_org_Mouse
31423	ENSMUST00000089680	Eef1d-203	protein_coding	Ribo-seq		1	sORFs_org_Mouse

1184612

192

ACG...

TMR...

ACG

Alternative
InCDS
Overlapping
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
421711	ENSMUST00000089681	Eef1d-204	protein_coding	Ribo-seq		1	sORFs_org_Mouse

791646

183

TTG...

LAM...

TTG

Alternative
Downstream
Overlapping
sORF

MEF, E14, B_cell,
v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
469445	ENSMUST00000154584	Eef1d-218	protein_coding	Ribo-seq		2	sORFs_org_Mouse
850692	ENSMUST00000109975	Eef1d-206	protein_coding	Ribo-seq		3	sORFs_org_Mouse
681698	ENSMUST00000109972	Eef1d-205	protein_coding	Ribo-seq		2	sORFs_org_Mouse

11633

ATG...

MQK...

ATG

Alternative
InCDS
Overlapping
sORF
Intronic

E14, MEF, Neutrophil,
NSC, R1E, BMDC,
Spleen_B_cell, B_cell, Liver,
Skin_tumor, Testis, v6-5,
3T3, Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
469445	ENSMUST00000154584	Eef1d-218	protein_coding	Ribo-seq	moderate	6	sORFs_org_Mouse
1676019	ENSMUST00000144614	Eef1d-215	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse
421711	ENSMUST00000089681	Eef1d-204	protein_coding	Ribo-seq	moderate	2	sORFs_org_Mouse
358184	ENSMUST00000023235	Eef1d-201	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse
11360	ENSMUST00000123712	Eef1d-208	protein_coding	Ribo-seq	moderate	3	sORFs_org_Mouse
31423	ENSMUST00000089680	Eef1d-203	protein_coding	Ribo-seq	moderate	2	sORFs_org_Mouse
681698	ENSMUST00000109972	Eef1d-205	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse
359799	ENSMUST00000129800	Eef1d-210	retained_intron	Ribo-seq	moderate	2	sORFs_org_Mouse

11558

ATG...

MMQ...

ATG

Alternative
InCDS
Overlapping
sORF
Intronic

Testis, Brain, Liver,
Spleen_B_cell, 3T3, BMDC,
E14, MEF, B_cell,
Skin_tumor, Neutrophil, NSC,
R1E, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
31423	ENSMUST00000089680	Eef1d-203	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse
359799	ENSMUST00000129800	Eef1d-210	retained_intron	Ribo-seq	moderate	2	sORFs_org_Mouse
358184	ENSMUST00000023235	Eef1d-201	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse
681698	ENSMUST00000109972	Eef1d-205	protein_coding	Ribo-seq	moderate	2	sORFs_org_Mouse
421711	ENSMUST00000089681	Eef1d-204	protein_coding	Ribo-seq	moderate	3	sORFs_org_Mouse
1676019	ENSMUST00000144614	Eef1d-215	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse
11360	ENSMUST00000123712	Eef1d-208	protein_coding	Ribo-seq	moderate	3	sORFs_org_Mouse
469445	ENSMUST00000154584	Eef1d-218	protein_coding	Ribo-seq	moderate	7	sORFs_org_Mouse

975998

162

ATG...

MRT...

ATG

Alternative
InCDS
Overlapping
sORF

MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
469445	ENSMUST00000154584	Eef1d-218	protein_coding	Ribo-seq		1	sORFs_org_Mouse

791563

177

ATG...

MAS...

ATG

sORF
Alternative
Downstream
Overlapping

E14, MEF,
Glioma, Liver, MESC,
B_cell, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
3019614	UNKNOWN_TRANSCRIPT			Predicted		1	Samandi2017
850692	ENSMUST00000109975	Eef1d-206	protein_coding	Ribo-seq		2	sORFs_org_Mouse
2789611	ENSMUST00000151066	Eef1d-217	protein_coding	Ribo-seq		1	Johnstone2016
681698	ENSMUST00000109972	Eef1d-205	protein_coding	Ribo-seq		2	sORFs_org_Mouse

30783

105

TTG...

LAM...

TTG

sORF
Alternative
InCDS
Overlapping
Intronic

Brain, Liver, MEF,
BMDC, E14, Neutrophil,
R1E, Spleen_B_cell, 3T3,
B_cell, v6-5, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
11409	ENSMUST00000137426	Eef1d-212	protein_coding	Ribo-seq		1	sORFs_org_Mouse
850692	ENSMUST00000109975	Eef1d-206	protein_coding	Ribo-seq		2	sORFs_org_Mouse
421711	ENSMUST00000089681	Eef1d-204	protein_coding	Ribo-seq		3	sORFs_org_Mouse
469445	ENSMUST00000154584	Eef1d-218	protein_coding	Ribo-seq		7	sORFs_org_Mouse
681698	ENSMUST00000109972	Eef1d-205	protein_coding	Ribo-seq		2	sORFs_org_Mouse
31423	ENSMUST00000089680	Eef1d-203	protein_coding	Ribo-seq		1	sORFs_org_Mouse
30784	ENSMUST00000134222	Eef1d-211	retained_intron	Ribo-seq		1	sORFs_org_Mouse

32020

162

GTG...

VCV...

GTG

Intronic
sORF
Alternative
InCDS
Overlapping

Testis, BMDC, E14,
MEF, v6-5, 3T3,
B_cell, Neutrophil, R1E,
Spleen_B_cell, Brain, Liver

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
30784	ENSMUST00000134222	Eef1d-211	retained_intron	Ribo-seq		1	sORFs_org_Mouse
421711	ENSMUST00000089681	Eef1d-204	protein_coding	Ribo-seq		3	sORFs_org_Mouse
31423	ENSMUST00000089680	Eef1d-203	protein_coding	Ribo-seq		1	sORFs_org_Mouse
681698	ENSMUST00000109972	Eef1d-205	protein_coding	Ribo-seq		2	sORFs_org_Mouse
469445	ENSMUST00000154584	Eef1d-218	protein_coding	Ribo-seq		5	sORFs_org_Mouse
11409	ENSMUST00000137426	Eef1d-212	protein_coding	Ribo-seq		1	sORFs_org_Mouse
850692	ENSMUST00000109975	Eef1d-206	protein_coding	Ribo-seq		1	sORFs_org_Mouse

1181657

159

AGG...

RTR...

AGG

Alternative
InCDS
Overlapping
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
421711	ENSMUST00000089681	Eef1d-204	protein_coding	Ribo-seq		1	sORFs_org_Mouse

360982

ATG...

MRR...

ATG

Alternative
InCDS
Overlapping
sORF

Glioma, Liver, MEF,
MESC, BMDC, E14,
Neutrophil, NSC, R1E,
v6-5, Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
2789611	ENSMUST00000151066	Eef1d-217	protein_coding	Ribo-seq	weak	1	Johnstone2016
421711	ENSMUST00000089681	Eef1d-204	protein_coding	Ribo-seq	weak	2	sORFs_org_Mouse
1676019	ENSMUST00000144614	Eef1d-215	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse
469445	ENSMUST00000154584	Eef1d-218	protein_coding	Ribo-seq	weak	7	sORFs_org_Mouse
11360	ENSMUST00000123712	Eef1d-208	protein_coding	Ribo-seq	weak	2	sORFs_org_Mouse

1676204

150

GTG...

VWW...

GTG

Alternative
Downstream
Overlapping
sORF

MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
850692	ENSMUST00000109975	Eef1d-206	protein_coding	Ribo-seq		1	sORFs_org_Mouse

1700790

GTG...

VST...

GTG

Alternative
Downstream
Overlapping
sORF

MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
850692	ENSMUST00000109975	Eef1d-206	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse

421710

CTG...

LSS...

CTG

Alternative
Overlapping
sORF
Upstream

B_cell, C2C12, Liver,
MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
421711	ENSMUST00000089681	Eef1d-204	protein_coding	Ribo-seq		5	sORFs_org_Mouse

31685

108

CTG...

LLA...

CTG

Alternative
InCDS
Overlapping
sORF
Intronic

E14, MEF, Neutrophil,
R1E, Spleen_B_cell, Liver,
BMDC, Testis, v6-5,
Brain, 3T3, B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
469445	ENSMUST00000154584	Eef1d-218	protein_coding	Ribo-seq		6	sORFs_org_Mouse
850692	ENSMUST00000109975	Eef1d-206	protein_coding	Ribo-seq		2	sORFs_org_Mouse
421711	ENSMUST00000089681	Eef1d-204	protein_coding	Ribo-seq		2	sORFs_org_Mouse
30784	ENSMUST00000134222	Eef1d-211	retained_intron	Ribo-seq		1	sORFs_org_Mouse
31423	ENSMUST00000089680	Eef1d-203	protein_coding	Ribo-seq		1	sORFs_org_Mouse
11409	ENSMUST00000137426	Eef1d-212	protein_coding	Ribo-seq		1	sORFs_org_Mouse
681698	ENSMUST00000109972	Eef1d-205	protein_coding	Ribo-seq		2	sORFs_org_Mouse

32163

114

TTG...

LCL...

TTG

Alternative
InCDS
Overlapping
sORF
Intronic

BMDC, MEF, Brain,
Liver, Testis, 3T3,
B_cell, v6-5, E14,
Neutrophil, R1E, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
421711	ENSMUST00000089681	Eef1d-204	protein_coding	Ribo-seq		2	sORFs_org_Mouse
11409	ENSMUST00000137426	Eef1d-212	protein_coding	Ribo-seq		1	sORFs_org_Mouse
850692	ENSMUST00000109975	Eef1d-206	protein_coding	Ribo-seq		1	sORFs_org_Mouse
30784	ENSMUST00000134222	Eef1d-211	retained_intron	Ribo-seq		1	sORFs_org_Mouse
681698	ENSMUST00000109972	Eef1d-205	protein_coding	Ribo-seq		2	sORFs_org_Mouse
31423	ENSMUST00000089680	Eef1d-203	protein_coding	Ribo-seq		1	sORFs_org_Mouse
469445	ENSMUST00000154584	Eef1d-218	protein_coding	Ribo-seq		6	sORFs_org_Mouse

11408

108

TTG...

LCA...

TTG

sORF
InCDS
Overlapping

Brain, Skin_tumor, MEF,
3T3, E14, R1E,
Spleen_B_cell, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
11409	ENSMUST00000137426	Eef1d-212	protein_coding	Ribo-seq	moderate	2	sORFs_org_Mouse
850692	ENSMUST00000109975	Eef1d-206	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse
681698	ENSMUST00000109972	Eef1d-205	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse
469445	ENSMUST00000154584	Eef1d-218	protein_coding	Ribo-seq	moderate	5	sORFs_org_Mouse
421711	ENSMUST00000089681	Eef1d-204	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse
31423	ENSMUST00000089680	Eef1d-203	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse

32322

219

CTG...

LVW...

CTG

Intronic
sORF

Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
30784	ENSMUST00000134222	Eef1d-211	retained_intron	Ribo-seq		1	sORFs_org_Mouse

1180833

CTG...

LRR...

CTG

sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
1180834	ENSMUST00000141475	Eef1d-214	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse

31602

ATG...

MAS...

ATG

Intronic
sORF
Alternative
InCDS
Overlapping

Testis, BMDC, E14,
MEF, Liver, 3T3,
B_cell, v6-5, Brain,
Neutrophil, R1E, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
30784	ENSMUST00000134222	Eef1d-211	retained_intron	Ribo-seq		1	sORFs_org_Mouse
421711	ENSMUST00000089681	Eef1d-204	protein_coding	Ribo-seq		3	sORFs_org_Mouse
850692	ENSMUST00000109975	Eef1d-206	protein_coding	Ribo-seq		2	sORFs_org_Mouse
681698	ENSMUST00000109972	Eef1d-205	protein_coding	Ribo-seq		2	sORFs_org_Mouse
31423	ENSMUST00000089680	Eef1d-203	protein_coding	Ribo-seq		1	sORFs_org_Mouse
11409	ENSMUST00000137426	Eef1d-212	protein_coding	Ribo-seq		1	sORFs_org_Mouse
469445	ENSMUST00000154584	Eef1d-218	protein_coding	Ribo-seq		6	sORFs_org_Mouse

472160

TTG...

LGG...

TTG

InCDS
Overlapping
sORF

E14, MEF, R1E,
Spleen_B_cell, Brain, 3T3,
B_cell, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
469445	ENSMUST00000154584	Eef1d-218	protein_coding	Ribo-seq	strong	5	sORFs_org_Mouse
850692	ENSMUST00000109975	Eef1d-206	protein_coding	Ribo-seq	strong	1	sORFs_org_Mouse
11409	ENSMUST00000137426	Eef1d-212	protein_coding	Ribo-seq	strong	1	sORFs_org_Mouse
681698	ENSMUST00000109972	Eef1d-205	protein_coding	Ribo-seq	strong	2	sORFs_org_Mouse
31423	ENSMUST00000089680	Eef1d-203	protein_coding	Ribo-seq	strong	1	sORFs_org_Mouse
421711	ENSMUST00000089681	Eef1d-204	protein_coding	Ribo-seq	strong	1	sORFs_org_Mouse

791194

186

CTG...

LLA...

CTG

Alternative
Downstream
Overlapping
sORF

B_cell, v6-5, MEF,
E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
681698	ENSMUST00000109972	Eef1d-205	protein_coding	Ribo-seq		2	sORFs_org_Mouse
850692	ENSMUST00000109975	Eef1d-206	protein_coding	Ribo-seq		2	sORFs_org_Mouse
469445	ENSMUST00000154584	Eef1d-218	protein_coding	Ribo-seq		2	sORFs_org_Mouse

472786

192

TTG...

LCL...

TTG

Alternative
Downstream
Overlapping
sORF

MEF, B_cell, v6-5,
E14, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
850692	ENSMUST00000109975	Eef1d-206	protein_coding	Ribo-seq		1	sORFs_org_Mouse
681698	ENSMUST00000109972	Eef1d-205	protein_coding	Ribo-seq		2	sORFs_org_Mouse
469445	ENSMUST00000154584	Eef1d-218	protein_coding	Ribo-seq		3	sORFs_org_Mouse

31107

195

GTG...

VPV...

GTG

Intronic
sORF

Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
30784	ENSMUST00000134222	Eef1d-211	retained_intron	Ribo-seq		1	sORFs_org_Mouse

1184421

186

AGG...

RTR...

AGG

Alternative
InCDS
Overlapping
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
421711	ENSMUST00000089681	Eef1d-204	protein_coding	Ribo-seq		1	sORFs_org_Mouse

1145783

240

GTG...

VCV...

GTG

Alternative
Downstream
Overlapping
sORF

MEF, v6-5, E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
469445	ENSMUST00000154584	Eef1d-218	protein_coding	Ribo-seq		1	sORFs_org_Mouse
681698	ENSMUST00000109972	Eef1d-205	protein_coding	Ribo-seq		1	sORFs_org_Mouse
850692	ENSMUST00000109975	Eef1d-206	protein_coding	Ribo-seq		2	sORFs_org_Mouse

1145130

138

ATG...

MTK...

ATG

Alternative
Downstream
Overlapping
sORF

v6-5, E14, MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
681698	ENSMUST00000109972	Eef1d-205	protein_coding	Ribo-seq		1	sORFs_org_Mouse
850692	ENSMUST00000109975	Eef1d-206	protein_coding	Ribo-seq		2	sORFs_org_Mouse

1185179

111

AGG...

RRR...

AGG

Alternative
Downstream
Overlapping
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
850692	ENSMUST00000109975	Eef1d-206	protein_coding	Ribo-seq		1	sORFs_org_Mouse

32393

243

GTG...

VRS...

GTG

Intronic
sORF

Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
30784	ENSMUST00000134222	Eef1d-211	retained_intron	Ribo-seq		1	sORFs_org_Mouse

1145243

TTG...

LVA...

TTG

sORF

MEF, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
1044000	ENSMUST00000145764	Eef1d-216	protein_coding	Ribo-seq		2	sORFs_org_Mouse

1181315

165

ACG...

TMR...

ACG

Alternative
InCDS
Overlapping
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
421711	ENSMUST00000089681	Eef1d-204	protein_coding	Ribo-seq		1	sORFs_org_Mouse

31098

228

TTG...

LDG...

TTG

Intronic
sORF

Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
30784	ENSMUST00000134222	Eef1d-211	retained_intron	Ribo-seq		1	sORFs_org_Mouse

1179981

AGG...

RRR...

AGG

Alternative
InCDS
Overlapping
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
421711	ENSMUST00000089681	Eef1d-204	protein_coding	Ribo-seq		1	sORFs_org_Mouse

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