Gene NCBI:66641 | MetamORF

Gene

ID CARD

NCBI:66641

Aliases

2810005O12Rik
5730470L24Rik, AI450236, AI839862
ENSMUSG00000027854, MGI:1913891, NCBI:66641
OFF:Sike1, Sike, Sike1
Sikeb

Chromosome

Transcripts

21 ORFs
5 known transcripts
40 ORF to known transcript associations

MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

ORFs

Display all the transcripts related to the entry.

52402

ENSMUST00000151065

Sike1-204

retained_intron

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
52645	66	GTG ...	VDA ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	Brain, Testis
1014683	174	CTG ...	LRE ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	Brain
54116	204	TTG ...	LTD ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Intronic sORF	Brain, Testis
54135	90	GTG ...	VKD ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Intronic sORF	E14, Testis
1013265	183	CTG ...	LER ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Brain
53187	57	CTG ...	LLS ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Intronic sORF	Brain, E14, Testis
52401	123	CTG ...	LIM ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Testis
53874	150	TTG ...	LEE ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Intronic sORF	Brain, Testis
1013677	186	CTG ...	LLE ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Brain
54611	162	CTG ...	LWV ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	Brain, Testis
54310	54	CTG ...	LSQ ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Intronic sORF	Brain, E14, Testis
54475	129	TTG ...	LEL ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Intronic sORF	Brain, Testis

17146

ENSMUST00000196827

Sike1-205

retained_intron

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
53874	150	TTG ...	LEE ...	Ribo-seq	TTG	moderate	6	sORFs_org_Mouse	Intronic sORF	Brain, E14, Liver, MEF, NSC, v6-5
17145	87	GTG ...	VGF ...	Ribo-seq	GTG	strong	2	sORFs_org_Mouse	Intronic sORF	Brain, Skin_tumor
52401	123	CTG ...	LIM ...	Ribo-seq	CTG	moderate	7	sORFs_org_Mouse	Intronic sORF	Brain, E14, Liver, MEF, NSC, v6-5
54475	129	TTG ...	LEL ...	Ribo-seq	TTG	strong	7	sORFs_org_Mouse	Intronic sORF	Brain, E14, Liver, MEF, NSC, v6-5
1172042	48	CTG ...	LFR ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Intronic sORF	MEF, v6-5
128572	48	CTG ...	LKA ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	Intronic sORF	Brain, E14, Liver, MEF
135870	42	TTG ...	LKV ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	Intronic sORF	B_cell, Brain, MEF
134510	111	ATG ...	MFA ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Intronic sORF	Brain
54611	162	CTG ...	LWV ...	Ribo-seq	CTG	moderate	7	sORFs_org_Mouse	Intronic sORF	Brain, E14, Liver, MEF, NSC, v6-5
52645	66	GTG ...	VDA ...	Ribo-seq	GTG	strong	6	sORFs_org_Mouse	Intronic sORF	Brain, E14, Liver, MEF, v6-5

51924

ENSMUST00000197601

Sike1-206

nonsense_mediated_decay

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
54611	162	CTG ...	LWV ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	NMD sORF	R1E
54310	54	CTG ...	LSQ ...	Ribo-seq	CTG		2	sORFs_org_Mouse	NMD sORF	3T3, R1E
52401	123	CTG ...	LIM ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	NMD sORF	R1E
53187	57	CTG ...	LLS ...	Ribo-seq	CTG		2	sORFs_org_Mouse	NMD sORF	3T3, R1E
54475	129	TTG ...	LEL ...	Ribo-seq	TTG	strong	1	sORFs_org_Mouse	NMD sORF	R1E
53874	150	TTG ...	LEE ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	NMD sORF	R1E
54135	90	GTG ...	VKD ...	Ribo-seq	GTG		3	sORFs_org_Mouse	NMD sORF	3T3, Liver, R1E
51923	54	CTG ...	LQV ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	NMD sORF	Liver, Testis
52645	66	GTG ...	VDA ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	NMD sORF	R1E
52339	75	CTG ...	LSI ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	NMD sORF	Liver, R1E, Testis
1425122	30	GTG ...	VAP ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	NMD sORF	Liver

131447

ENSMUST00000137332

Sike1-203

retained_intron

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
17145	87	GTG ...	VGF ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	Intronic sORF	NSC
54310	54	CTG ...	LSQ ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Intronic sORF	Brain, MEF, Neutrophil, v6-5
134510	111	ATG ...	MFA ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Intronic sORF	NSC
54135	90	GTG ...	VKD ...	Ribo-seq	GTG		5	sORFs_org_Mouse	Intronic sORF	Brain, MEF, Neutrophil, NSC, v6-5
53187	57	CTG ...	LLS ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Intronic sORF	Brain, MEF, Neutrophil, v6-5

144568

ENSMUST00000119450

Sike1-202

protein_coding

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

144567

105

CTG ...

LRC ...

Ribo-seq

CTG

sORFs_org_Mouse

3T3, B_cell, Brain,
Spleen_B_cell

135870

TTG ...

LKV ...

Ribo-seq

TTG

moderate

sORFs_org_Mouse

MEF

ORFs

21 ORFs
5 known transcripts
40 ORF to known transcript associations

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF Length

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Start codon

The start codon sequence of the ORF.

ORF annotations

A comma-separated list of all the annotations computed by our algorithm for the ORF. This list includes the annotations computed for the ORF for all transcripts. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of all the cell types in which the ORF has already been identified.

Transcripts

Display all the transcripts related to the entry.

52645

GTG...

VDA...

GTG

Intronic
sORF
NMD

Brain, Testis, R1E,
E14, Liver, MEF,
v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
52402	ENSMUST00000151065	Sike1-204	retained_intron	Ribo-seq		2	sORFs_org_Mouse
51924	ENSMUST00000197601	Sike1-206	nonsense_mediated_decay	Ribo-seq	strong	1	sORFs_org_Mouse
17146	ENSMUST00000196827	Sike1-205	retained_intron	Ribo-seq	strong	6	sORFs_org_Mouse

1014683

174

CTG...

LRE...

CTG

Intronic
sORF

Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
52402	ENSMUST00000151065	Sike1-204	retained_intron	Ribo-seq	weak	1	sORFs_org_Mouse

54116

204

TTG...

LTD...

TTG

Intronic
sORF

Brain, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
52402	ENSMUST00000151065	Sike1-204	retained_intron	Ribo-seq	moderate	2	sORFs_org_Mouse

53874

150

TTG...

LEE...

TTG

Intronic
sORF
NMD

Brain, E14, Liver,
MEF, NSC, v6-5,
Testis, R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
17146	ENSMUST00000196827	Sike1-205	retained_intron	Ribo-seq	moderate	6	sORFs_org_Mouse
52402	ENSMUST00000151065	Sike1-204	retained_intron	Ribo-seq		2	sORFs_org_Mouse
51924	ENSMUST00000197601	Sike1-206	nonsense_mediated_decay	Ribo-seq	moderate	1	sORFs_org_Mouse

54611

162

CTG...

LWV...

CTG

NMD
sORF
Intronic

R1E, Brain, Testis,
E14, Liver, MEF,
NSC, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
51924	ENSMUST00000197601	Sike1-206	nonsense_mediated_decay	Ribo-seq	moderate	1	sORFs_org_Mouse
52402	ENSMUST00000151065	Sike1-204	retained_intron	Ribo-seq		2	sORFs_org_Mouse
17146	ENSMUST00000196827	Sike1-205	retained_intron	Ribo-seq	moderate	7	sORFs_org_Mouse

17145

GTG...

VGF...

GTG

Intronic
sORF

Brain, Skin_tumor, NSC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
17146	ENSMUST00000196827	Sike1-205	retained_intron	Ribo-seq	strong	2	sORFs_org_Mouse
131447	ENSMUST00000137332	Sike1-203	retained_intron	Ribo-seq	strong	1	sORFs_org_Mouse

54310

CTG...

LSQ...

CTG

NMD
sORF
Intronic

3T3, R1E, Brain,
MEF, Neutrophil, v6-5,
E14, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
51924	ENSMUST00000197601	Sike1-206	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse
131447	ENSMUST00000137332	Sike1-203	retained_intron	Ribo-seq		5	sORFs_org_Mouse
52402	ENSMUST00000151065	Sike1-204	retained_intron	Ribo-seq	weak	3	sORFs_org_Mouse

54135

GTG...

VKD...

GTG

Intronic
sORF
NMD

E14, Testis, 3T3,
Liver, R1E, Brain,
MEF, Neutrophil, NSC,
v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
52402	ENSMUST00000151065	Sike1-204	retained_intron	Ribo-seq	moderate	2	sORFs_org_Mouse
51924	ENSMUST00000197601	Sike1-206	nonsense_mediated_decay	Ribo-seq		3	sORFs_org_Mouse
131447	ENSMUST00000137332	Sike1-203	retained_intron	Ribo-seq		5	sORFs_org_Mouse

52401

123

CTG...

LIM...

CTG

NMD
sORF
Intronic

R1E, Brain, E14,
Liver, MEF, NSC,
v6-5, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
51924	ENSMUST00000197601	Sike1-206	nonsense_mediated_decay	Ribo-seq	moderate	1	sORFs_org_Mouse
17146	ENSMUST00000196827	Sike1-205	retained_intron	Ribo-seq	moderate	7	sORFs_org_Mouse
52402	ENSMUST00000151065	Sike1-204	retained_intron	Ribo-seq		1	sORFs_org_Mouse

53187

CTG...

LLS...

CTG

NMD
sORF
Intronic

3T3, R1E, Brain,
E14, Testis, MEF,
Neutrophil, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
51924	ENSMUST00000197601	Sike1-206	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse
52402	ENSMUST00000151065	Sike1-204	retained_intron	Ribo-seq	moderate	3	sORFs_org_Mouse
131447	ENSMUST00000137332	Sike1-203	retained_intron	Ribo-seq		4	sORFs_org_Mouse

1013265

183

CTG...

LER...

CTG

Intronic
sORF

Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
52402	ENSMUST00000151065	Sike1-204	retained_intron	Ribo-seq	moderate	1	sORFs_org_Mouse

54475

129

TTG...

LEL...

TTG

Intronic
sORF
NMD

Brain, E14, Liver,
MEF, NSC, v6-5,
R1E, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
17146	ENSMUST00000196827	Sike1-205	retained_intron	Ribo-seq	strong	7	sORFs_org_Mouse
51924	ENSMUST00000197601	Sike1-206	nonsense_mediated_decay	Ribo-seq	strong	1	sORFs_org_Mouse
52402	ENSMUST00000151065	Sike1-204	retained_intron	Ribo-seq		2	sORFs_org_Mouse

1172042

CTG...

LFR...

CTG

Intronic
sORF

MEF, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
17146	ENSMUST00000196827	Sike1-205	retained_intron	Ribo-seq	moderate	2	sORFs_org_Mouse

128572

CTG...

LKA...

CTG

Intronic
sORF

Brain, E14, Liver,
MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
17146	ENSMUST00000196827	Sike1-205	retained_intron	Ribo-seq	moderate	4	sORFs_org_Mouse

144567

105

CTG...

LRC...

CTG

Alternative
InCDS
Overlapping
sORF

3T3, B_cell, Brain,
Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
144568	ENSMUST00000119450	Sike1-202	protein_coding	Ribo-seq		4	sORFs_org_Mouse

135870

TTG...

LKV...

TTG

Intronic
sORF
InCDS
Overlapping

B_cell, Brain, MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
17146	ENSMUST00000196827	Sike1-205	retained_intron	Ribo-seq	moderate	3	sORFs_org_Mouse
144568	ENSMUST00000119450	Sike1-202	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse

1013677

186

CTG...

LLE...

CTG

Intronic
sORF

Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
52402	ENSMUST00000151065	Sike1-204	retained_intron	Ribo-seq	moderate	1	sORFs_org_Mouse

134510

111

ATG...

MFA...

ATG

Intronic
sORF

NSC, Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
131447	ENSMUST00000137332	Sike1-203	retained_intron	Ribo-seq		1	sORFs_org_Mouse
17146	ENSMUST00000196827	Sike1-205	retained_intron	Ribo-seq	weak	1	sORFs_org_Mouse

51923

CTG...

LQV...

CTG

NMD
sORF

Liver, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
51924	ENSMUST00000197601	Sike1-206	nonsense_mediated_decay	Ribo-seq	weak	2	sORFs_org_Mouse

52339

CTG...

LSI...

CTG

NMD
sORF

Liver, R1E, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
51924	ENSMUST00000197601	Sike1-206	nonsense_mediated_decay	Ribo-seq	weak	3	sORFs_org_Mouse

1425122

GTG...

VAP...

GTG

NMD
sORF

Liver

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
51924	ENSMUST00000197601	Sike1-206	nonsense_mediated_decay	Ribo-seq	moderate	1	sORFs_org_Mouse

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