Gene NCBI:66416 | MetamORF

Gene

ID CARD

NCBI:66416

Aliases

14.5kDa
2400007M02Rik, CI-B14.5a, ENSMUSG00000041881
MGI:1913666, NCBI:66416, Ndufa7
OFF:Ndufa7

Chromosome

Transcripts

28 ORFs
9 known transcripts
59 ORF to known transcript associations

MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

ORFs

Display all the transcripts related to the entry.

38065

ENSMUST00000173807

Ndufa7-206

processed_transcript

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1195287	39	AGG ...	RQG ...	Ribo-seq	AGG		1	sORFs_org_Mouse	ncRNA sORF	E14
37473	66	GTG ...	VPP ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	BMDC, R1E
38064	48	CTG ...	LQA ...	Ribo-seq	CTG		4	sORFs_org_Mouse	ncRNA sORF	BMDC, MEF, R1E, Testis
36298	129	GTG ...	VGP ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	R1E
37562	30	CTG ...	LRY ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	BMDC, R1E
411137	216	ATG ...	MAA ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	C2C12
35966	30	CTG ...	LVS ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	BMDC, R1E
38603	111	CTG ...	LSN ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	R1E

1190817

ENSMUST00000173946

Ndufa7-207

retained_intron

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1194575	36	AAG ...	KAL ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Intronic sORF	E14
1194274	66	AAG ...	KAV ...	Ribo-seq	AAG	strong	1	sORFs_org_Mouse	Intronic sORF	E14
1194069	171	AGG ...	RQG ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Intronic sORF	E14
36298	129	GTG ...	VGP ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	E14
1194562	150	AGG ...	RPP ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Intronic sORF	E14
411137	216	ATG ...	MAA ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Intronic sORF	E14
1191279	204	AAG ...	KLC ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Intronic sORF	E14

35967

ENSMUST00000173175

Ndufa7-203

processed_transcript

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
35966	30	CTG ...	LVS ...	Ribo-seq	CTG		4	sORFs_org_Mouse	ncRNA sORF	Brain, Liver, Testis
37473	66	GTG ...	VPP ...	Ribo-seq	GTG		4	sORFs_org_Mouse	ncRNA sORF	Brain, Liver, Testis
1004315	54	TTG ...	LSF ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
36298	129	GTG ...	VGP ...	Ribo-seq	GTG		4	sORFs_org_Mouse	ncRNA sORF	Brain, Liver, Testis
38603	111	CTG ...	LSN ...	Ribo-seq	CTG		4	sORFs_org_Mouse	ncRNA sORF	Brain, Liver, Testis
37562	30	CTG ...	LRY ...	Ribo-seq	CTG		3	sORFs_org_Mouse	ncRNA sORF	B_cell, Liver, Testis
380295	33	CTG ...	LQW ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	ncRNA sORF	Brain, Liver
411137	216	ATG ...	MAA ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	BMDC

380642

ENSMUST00000173556

Ndufa7-205

processed_transcript

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
35966	30	CTG ...	LVS ...	Ribo-seq	CTG		7	sORFs_org_Mouse	ncRNA sORF	Brain, E14, MEF, Neutrophil, NSC, v6-5
1004315	54	TTG ...	LSF ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	NSC
38603	111	CTG ...	LSN ...	Ribo-seq	CTG		4	sORFs_org_Mouse	ncRNA sORF	Brain, E14, Neutrophil, NSC
380295	33	CTG ...	LQW ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	ncRNA sORF	E14, MEF, NSC
36298	129	GTG ...	VGP ...	Ribo-seq	GTG		3	sORFs_org_Mouse	ncRNA sORF	Brain, E14, Neutrophil
391040	219	ATG ...	MSR ...	Ribo-seq	ATG		6	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, E14, R1E
37473	66	GTG ...	VPP ...	Ribo-seq	GTG		6	sORFs_org_Mouse	ncRNA sORF	Brain, E14, MEF, Neutrophil, NSC, v6-5

422168

ENSMUST00000173132

Ndufa7-202

nonsense_mediated_decay

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
36298	129	GTG ...	VGP ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative Downstream NMD Overlapping sORF	Spleen_B_cell
38064	48	CTG ...	LQA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain
38603	111	CTG ...	LSN ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative Downstream NMD Overlapping sORF	Spleen_B_cell
35966	30	CTG ...	LVS ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative Downstream NMD sORF	Liver, Spleen_B_cell
39291	114	ATG ...	MAA ...	Ribo-seq	ATG		1	Johnstone2016	Alternative Downstream NMD sORF	Glioma, Liver, MEF, MESC
422167	102	ATC ...	IQK ...	Ribo-seq	ATC		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	C2C12
37473	66	GTG ...	VPP ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	Spleen_B_cell
380295	33	CTG ...	LQW ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	Spleen_B_cell

701923

ENSMUST00000174847

Ndufa7-209

processed_transcript

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
38603	111	CTG ...	LSN ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
37473	66	GTG ...	VPP ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	3T3, Brain
380295	33	CTG ...	LQW ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	ncRNA sORF	3T3, Brain
36298	129	GTG ...	VGP ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
1004315	54	TTG ...	LSF ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
35966	30	CTG ...	LVS ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	3T3, Brain

381617

ENSMUST00000174498

Ndufa7-208

retained_intron

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
38064	48	CTG ...	LQA ...	Ribo-seq	CTG	moderate	12	sORFs_org_Mouse	Intronic sORF	3T3, Brain, E14, Liver, MEF, Neutrophil, NSC, v6-5
1190571	105	AGG ...	RRS ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	Intronic sORF	E14
422167	102	ATC ...	IQK ...	Ribo-seq	ATC	moderate	1	sORFs_org_Mouse	Intronic sORF	BMDC
37562	30	CTG ...	LRY ...	Ribo-seq	CTG	weak	9	sORFs_org_Mouse	Intronic sORF	3T3, Brain, E14, MEF, Neutrophil, NSC, Spleen_B_cell, v6-5
1193969	39	AAG ...	KLQ ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	Intronic sORF	E14

39011

ENSMUST00000048249

Ndufa7-201

protein_coding

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1196046	102	AAG ...	KLC ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1195013	201	AGG ...	RRS ...	Ribo-seq	AGG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
390209	99	TTG ...	LCL ...	Ribo-seq	TTG		13	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, E14, Liver, MEF, NSC, R1E, Spleen_B_cell, v6-5
1195508	225	AGG ...	RRS ...	Ribo-seq	AGG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
39010	117	GTG ...	VMA ...	Ribo-seq	GTG		15	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, NSC, R1E, Spleen_B_cell, Testis, v6-5
39307	240	CTG ...	LGK ...	Ribo-seq	CTG		17	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, NSC, R1E, Spleen_B_cell, Testis, v6-5
1194645	48	AGG ...	RPP ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
39291	114	ATG ...	MAA ...	Ribo-seq	ATG		17	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, NSC, R1E, Spleen_B_cell, Testis, v6-5

482411

ENSMUST00000173182

Ndufa7-204

retained_intron

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

973184

AAG ...

KLR ...

Ribo-seq

AAG

sORFs_org_Mouse

Liver

38064

CTG ...

LQA ...

Ribo-seq

CTG

moderate

sORFs_org_Mouse

Liver, Spleen_B_cell

2985916

UNKNOWN_TRANSCRIPT

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
39291	114	ATG ...	MAA ...	Predicted	ATG		1	Samandi2017	sORF

ORFs

28 ORFs
9 known transcripts
59 ORF to known transcript associations

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF Length

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Start codon

The start codon sequence of the ORF.

ORF annotations

A comma-separated list of all the annotations computed by our algorithm for the ORF. This list includes the annotations computed for the ORF for all transcripts. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of all the cell types in which the ORF has already been identified.

Transcripts

Display all the transcripts related to the entry.

1195287

AGG...

RQG...

AGG

ncRNA
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
38065	ENSMUST00000173807	Ndufa7-206	processed_transcript	Ribo-seq		1	sORFs_org_Mouse

1194575

AAG...

KAL...

AAG

Intronic
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
1190817	ENSMUST00000173946	Ndufa7-207	retained_intron	Ribo-seq		1	sORFs_org_Mouse

37473

GTG...

VPP...

GTG

ncRNA
sORF
Alternative
Downstream
NMD

BMDC, R1E, 3T3,
Brain, Liver, Testis,
E14, MEF, Neutrophil,
NSC, v6-5, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
38065	ENSMUST00000173807	Ndufa7-206	processed_transcript	Ribo-seq		2	sORFs_org_Mouse
701923	ENSMUST00000174847	Ndufa7-209	processed_transcript	Ribo-seq		2	sORFs_org_Mouse
35967	ENSMUST00000173175	Ndufa7-203	processed_transcript	Ribo-seq		4	sORFs_org_Mouse
380642	ENSMUST00000173556	Ndufa7-205	processed_transcript	Ribo-seq		6	sORFs_org_Mouse
422168	ENSMUST00000173132	Ndufa7-202	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

35966

CTG...

LVS...

CTG

ncRNA
sORF
Alternative
Downstream
NMD

Brain, Liver, Testis,
E14, MEF, Neutrophil,
NSC, v6-5, Spleen_B_cell,
BMDC, R1E, 3T3

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
35967	ENSMUST00000173175	Ndufa7-203	processed_transcript	Ribo-seq		4	sORFs_org_Mouse
380642	ENSMUST00000173556	Ndufa7-205	processed_transcript	Ribo-seq		7	sORFs_org_Mouse
422168	ENSMUST00000173132	Ndufa7-202	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse
38065	ENSMUST00000173807	Ndufa7-206	processed_transcript	Ribo-seq		2	sORFs_org_Mouse
701923	ENSMUST00000174847	Ndufa7-209	processed_transcript	Ribo-seq		2	sORFs_org_Mouse

36298

129

GTG...

VGP...

GTG

Alternative
Downstream
NMD
Overlapping
sORF
ncRNA
Intronic

Spleen_B_cell, R1E, Brain,
Liver, Testis, E14,
Neutrophil

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
422168	ENSMUST00000173132	Ndufa7-202	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse
38065	ENSMUST00000173807	Ndufa7-206	processed_transcript	Ribo-seq		1	sORFs_org_Mouse
35967	ENSMUST00000173175	Ndufa7-203	processed_transcript	Ribo-seq		4	sORFs_org_Mouse
380642	ENSMUST00000173556	Ndufa7-205	processed_transcript	Ribo-seq		3	sORFs_org_Mouse
701923	ENSMUST00000174847	Ndufa7-209	processed_transcript	Ribo-seq		1	sORFs_org_Mouse
1190817	ENSMUST00000173946	Ndufa7-207	retained_intron	Ribo-seq		1	sORFs_org_Mouse

38603

111

CTG...

LSN...

CTG

ncRNA
sORF
Alternative
Downstream
NMD
Overlapping

Brain, E14, Neutrophil,
NSC, Spleen_B_cell, Liver,
Testis, R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
701923	ENSMUST00000174847	Ndufa7-209	processed_transcript	Ribo-seq		1	sORFs_org_Mouse
380642	ENSMUST00000173556	Ndufa7-205	processed_transcript	Ribo-seq		4	sORFs_org_Mouse
422168	ENSMUST00000173132	Ndufa7-202	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse
35967	ENSMUST00000173175	Ndufa7-203	processed_transcript	Ribo-seq		4	sORFs_org_Mouse
38065	ENSMUST00000173807	Ndufa7-206	processed_transcript	Ribo-seq		1	sORFs_org_Mouse

1004315

TTG...

LSF...

TTG

ncRNA
sORF

NSC, Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
380642	ENSMUST00000173556	Ndufa7-205	processed_transcript	Ribo-seq		1	sORFs_org_Mouse
35967	ENSMUST00000173175	Ndufa7-203	processed_transcript	Ribo-seq		1	sORFs_org_Mouse
701923	ENSMUST00000174847	Ndufa7-209	processed_transcript	Ribo-seq		1	sORFs_org_Mouse

38064

CTG...

LQA...

CTG

ncRNA
sORF
Intronic
Alternative
InCDS
NMD
Overlapping

BMDC, MEF, R1E,
Testis, 3T3, Brain,
E14, Liver, Neutrophil,
NSC, v6-5, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
38065	ENSMUST00000173807	Ndufa7-206	processed_transcript	Ribo-seq		4	sORFs_org_Mouse
381617	ENSMUST00000174498	Ndufa7-208	retained_intron	Ribo-seq	moderate	12	sORFs_org_Mouse
422168	ENSMUST00000173132	Ndufa7-202	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse
482411	ENSMUST00000173182	Ndufa7-204	retained_intron	Ribo-seq	moderate	2	sORFs_org_Mouse

37562

CTG...

LRY...

CTG

ncRNA
sORF
Intronic

BMDC, R1E, B_cell,
Liver, Testis, 3T3,
Brain, E14, MEF,
Neutrophil, NSC, Spleen_B_cell,
v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
38065	ENSMUST00000173807	Ndufa7-206	processed_transcript	Ribo-seq		2	sORFs_org_Mouse
35967	ENSMUST00000173175	Ndufa7-203	processed_transcript	Ribo-seq		3	sORFs_org_Mouse
381617	ENSMUST00000174498	Ndufa7-208	retained_intron	Ribo-seq	weak	9	sORFs_org_Mouse

1194274

AAG...

KAV...

AAG

Intronic
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
1190817	ENSMUST00000173946	Ndufa7-207	retained_intron	Ribo-seq	strong	1	sORFs_org_Mouse

380295

CTG...

LQW...

CTG

ncRNA
sORF
Alternative
Downstream
NMD

E14, MEF, NSC,
3T3, Brain, Liver,
Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
380642	ENSMUST00000173556	Ndufa7-205	processed_transcript	Ribo-seq	moderate	3	sORFs_org_Mouse
701923	ENSMUST00000174847	Ndufa7-209	processed_transcript	Ribo-seq	moderate	2	sORFs_org_Mouse
35967	ENSMUST00000173175	Ndufa7-203	processed_transcript	Ribo-seq	moderate	2	sORFs_org_Mouse
422168	ENSMUST00000173132	Ndufa7-202	nonsense_mediated_decay	Ribo-seq	moderate	1	sORFs_org_Mouse

1196046

102

AAG...

KLC...

AAG

Alternative
InCDS
Overlapping
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
39011	ENSMUST00000048249	Ndufa7-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse

1195013

201

AGG...

RRS...

AGG

InCDS
Overlapping
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
39011	ENSMUST00000048249	Ndufa7-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse

973184

AAG...

KLR...

AAG

Intronic
sORF

Liver

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
482411	ENSMUST00000173182	Ndufa7-204	retained_intron	Ribo-seq		1	sORFs_org_Mouse

1194069

171

AGG...

RQG...

AGG

Intronic
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
1190817	ENSMUST00000173946	Ndufa7-207	retained_intron	Ribo-seq		1	sORFs_org_Mouse

390209

TTG...

LCL...

TTG

Alternative
InCDS
Overlapping
sORF

3T3, B_cell, Brain,
E14, Liver, MEF,
NSC, R1E, Spleen_B_cell,
v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
39011	ENSMUST00000048249	Ndufa7-201	protein_coding	Ribo-seq		13	sORFs_org_Mouse

1195508

225

AGG...

RRS...

AGG

InCDS
Overlapping
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
39011	ENSMUST00000048249	Ndufa7-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse

1190571

105

AGG...

RRS...

AGG

Intronic
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
381617	ENSMUST00000174498	Ndufa7-208	retained_intron	Ribo-seq	weak	1	sORFs_org_Mouse

411137

216

ATG...

MAA...

ATG

ncRNA
sORF
Intronic

C2C12, BMDC, E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
38065	ENSMUST00000173807	Ndufa7-206	processed_transcript	Ribo-seq		1	sORFs_org_Mouse
35967	ENSMUST00000173175	Ndufa7-203	processed_transcript	Ribo-seq		1	sORFs_org_Mouse
1190817	ENSMUST00000173946	Ndufa7-207	retained_intron	Ribo-seq		1	sORFs_org_Mouse

39010

117

GTG...

VMA...

GTG

Alternative
InCDS
Overlapping
sORF

3T3, B_cell, BMDC,
Brain, E14, Liver,
MEF, NSC, R1E,
Spleen_B_cell, Testis, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
39011	ENSMUST00000048249	Ndufa7-201	protein_coding	Ribo-seq		15	sORFs_org_Mouse

39307

240

CTG...

LGK...

CTG

Alternative
InCDS
Overlapping
sORF

3T3, B_cell, BMDC,
Brain, E14, Liver,
MEF, NSC, R1E,
Spleen_B_cell, Testis, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
39011	ENSMUST00000048249	Ndufa7-201	protein_coding	Ribo-seq		17	sORFs_org_Mouse

39291

114

ATG...

MAA...

ATG

sORF
Alternative
Downstream
NMD
InCDS
Overlapping

Glioma, Liver,
MEF, MESC, 3T3,
B_cell, BMDC, Brain,
E14, NSC, R1E,
Spleen_B_cell, Testis, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
2985916	UNKNOWN_TRANSCRIPT			Predicted		1	Samandi2017
422168	ENSMUST00000173132	Ndufa7-202	nonsense_mediated_decay	Ribo-seq		1	Johnstone2016
39011	ENSMUST00000048249	Ndufa7-201	protein_coding	Ribo-seq		17	sORFs_org_Mouse

391040

219

ATG...

MSR...

ATG

ncRNA
sORF

B_cell, Brain, E14,
R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
380642	ENSMUST00000173556	Ndufa7-205	processed_transcript	Ribo-seq		6	sORFs_org_Mouse

422167

102

ATC...

IQK...

ATC

InCDS
NMD
Overlapping
sORF
Intronic

C2C12, BMDC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
422168	ENSMUST00000173132	Ndufa7-202	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse
381617	ENSMUST00000174498	Ndufa7-208	retained_intron	Ribo-seq	moderate	1	sORFs_org_Mouse

1194562

150

AGG...

RPP...

AGG

Intronic
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
1190817	ENSMUST00000173946	Ndufa7-207	retained_intron	Ribo-seq		1	sORFs_org_Mouse

1191279

204

AAG...

KLC...

AAG

Intronic
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
1190817	ENSMUST00000173946	Ndufa7-207	retained_intron	Ribo-seq		1	sORFs_org_Mouse

1193969

AAG...

KLQ...

AAG

Intronic
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
381617	ENSMUST00000174498	Ndufa7-208	retained_intron	Ribo-seq	moderate	1	sORFs_org_Mouse

1194645

AGG...

RPP...

AGG

Alternative
InCDS
Overlapping
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
39011	ENSMUST00000048249	Ndufa7-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse

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