Gene NCBI:66155 | MetamORF

Gene

ID CARD

NCBI:66155

Aliases

1110021H02Rik
AA062310, ENSMUSG00000062963, ESTM29
MGI:1913405, NCBI:66155, OFF:Ufc1
Ufc1

Chromosome

Transcripts

40 ORFs
5 known transcripts
88 ORF to known transcript associations

MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

ORFs

Display all the transcripts related to the entry.

8345

ENSMUST00000138974

Ufc1-203

retained_intron

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
364813	30	CTG ...	LES ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Intronic sORF	B_cell, Brain, Liver
326626	114	TTG ...	LAG ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Brain
822987	69	ATG ...	MIG ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Intronic sORF	B_cell
774831	48	TTG ...	LHC ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	B_cell
308929	42	CTG ...	LFA ...	Ribo-seq	CTG	weak	5	sORFs_org_Mouse	Intronic sORF	B_cell, Brain, Liver, MEF
299481	96	ATG ...	MWR ...	Ribo-seq	ATG	moderate	4	sORFs_org_Mouse	Intronic sORF	B_cell, Brain, Liver, MEF
381958	33	GTG ...	VIQ ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Intronic sORF	B_cell, Brain
43514	198	ATG ...	MLS ...	Predicted	ATG		1	Mackowiak2015	Intronic sORF
388849	69	CTG ...	LAV ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Intronic sORF	B_cell, Brain
399332	51	CTG ...	LII ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Intronic sORF	Brain, Liver
328039	54	CTG ...	LLQ ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	Brain
40939	81	CTG ...	LGP ...	Ribo-seq	CTG	strong	2	sORFs_org_Mouse	Intronic sORF	B_cell, Brain
325872	33	ATG ...	MLV ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse	Intronic sORF	Brain, Liver
106686	48	CTG ...	LIQ ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Intronic sORF	B_cell, Brain
326485	63	GTG ...	VEV ...	Ribo-seq	GTG	strong	2	sORFs_org_Mouse	Intronic sORF	B_cell, Brain
348755	45	GTG ...	VVW ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	Intronic sORF	Brain, Liver
86366	33	CTG ...	LDG ...	Ribo-seq	CTG	strong	3	sORFs_org_Mouse	Intronic sORF	B_cell, Brain, Liver
354326	30	CTG ...	LVH ...	Ribo-seq	CTG	strong	3	sORFs_org_Mouse	Intronic sORF	Brain, Liver
343229	51	TTG ...	LQV ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Intronic sORF	Brain
8344	69	GTG ...	VEN ...	Ribo-seq	GTG	moderate	5	sORFs_org_Mouse	Intronic sORF	B_cell, Brain, Liver, MEF, Skin_tumor
328471	63	TTG ...	LEN ...	Ribo-seq	TTG	strong	2	sORFs_org_Mouse	Intronic sORF	Brain, Liver

112944

ENSMUST00000111302

Ufc1-202

protein_coding

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
43514	198	ATG ...	MLS ...	Ribo-seq	ATG		1	sORFs_org_Mouse	CDS sORF	3T3
140474	54	CTG ...	LSW ...	Ribo-seq	CTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, BMDC
1172964	177	TTG ...	LVS ...	Ribo-seq	TTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	Liver
42939	204	GTG ...	VSM ...	Ribo-seq	GTG		1	sORFs_org_Mouse	CDS sORF	3T3
112943	63	TTG ...	LQS ...	Ribo-seq	TTG		5	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, Spleen_B_cell
130518	156	TTG ...	LEN ...	Ribo-seq	TTG		5	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, BMDC, Brain, Liver, Spleen_B_cell
48359	213	CTG ...	LSH ...	Ribo-seq	CTG		1	sORFs_org_Mouse	CDS sORF	3T3
453508	66	CTG ...	LLP ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Overlapping sORF Upstream	B_cell, Liver
1134053	66	GTG ...	VGA ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	v6-5
139338	75	CTG ...	LLR ...	Ribo-seq	CTG		3	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, BMDC, Brain

37508

ENSMUST00000152621

Ufc1-205

retained_intron

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
8344	69	GTG ...	VEN ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Intronic sORF	BMDC, E14, Spleen_B_cell, Testis
106686	48	CTG ...	LIQ ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Intronic sORF	BMDC, Liver, Spleen_B_cell
474311	84	TTG ...	LVS ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	Spleen_B_cell
326485	63	GTG ...	VEV ...	Ribo-seq	GTG	strong	3	sORFs_org_Mouse	Intronic sORF	BMDC, Liver, Spleen_B_cell
388849	69	CTG ...	LAV ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Intronic sORF	BMDC, Liver, Spleen_B_cell
299481	96	ATG ...	MWR ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Intronic sORF	Spleen_B_cell
1288179	39	AGG ...	RPL ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Intronic sORF	E14
325872	33	ATG ...	MLV ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Intronic sORF	Spleen_B_cell
308929	42	CTG ...	LFA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Spleen_B_cell
381958	33	GTG ...	VIQ ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Intronic sORF	Liver, Spleen_B_cell
1134053	66	GTG ...	VGA ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	E14
364813	30	CTG ...	LES ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	Brain, Spleen_B_cell
453508	66	CTG ...	LLP ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	Spleen_B_cell
86366	33	CTG ...	LDG ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Intronic sORF	BMDC, Spleen_B_cell, Testis
40939	81	CTG ...	LGP ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	Intronic sORF	BMDC, Liver, Spleen_B_cell, Testis
1275025	138	GTG ...	VQR ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	E14
103643	45	CTG ...	LVQ ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Intronic sORF	Brain, Liver
399332	51	CTG ...	LII ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	BMDC, Spleen_B_cell
343229	51	TTG ...	LQV ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	Liver
328471	63	TTG ...	LEN ...	Ribo-seq	TTG	strong	1	sORFs_org_Mouse	Intronic sORF	Spleen_B_cell
1292331	177	CTG ...	LKT ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	E14

42940

ENSMUST00000080001

Ufc1-201

protein_coding

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
43213	243	GTG ...	VFP ...	Ribo-seq	GTG		1	sORFs_org_Mouse	CDS sORF	Testis
325872	33	ATG ...	MLV ...	Ribo-seq	ATG	moderate	4	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	E14, Glioma, Liver, MEF, MESC, NSC
348755	45	GTG ...	VVW ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, NSC
414666	84	ATG ...	MIG ...	Ribo-seq	ATG		4	sORFs_org_Mouse Johnstone2016	Alternative sORF Upstream	3T3, C2C12, Glioma, Liver, MEF, MESC, R1E
1172964	177	TTG ...	LVS ...	Ribo-seq	TTG		4	sORFs_org_Mouse	InCDS Overlapping sORF	E14, NSC, R1E, v6-5
42939	204	GTG ...	VSM ...	Ribo-seq	GTG		1	sORFs_org_Mouse	CDS sORF	Testis
299481	96	ATG ...	MWR ...	Ribo-seq	ATG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, Neutrophil, NSC, R1E
328471	63	TTG ...	LEN ...	Ribo-seq	TTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, MEF, NSC, R1E
354326	30	CTG ...	LVH ...	Ribo-seq	CTG	strong	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, NSC
139338	75	CTG ...	LLR ...	Ribo-seq	CTG		6	sORFs_org_Mouse	InCDS Overlapping sORF	E14, Liver, MEF, R1E, v6-5
130518	156	TTG ...	LEN ...	Ribo-seq	TTG		5	sORFs_org_Mouse	InCDS Overlapping sORF	E14, MEF, NSC, R1E, v6-5
48359	213	CTG ...	LSH ...	Ribo-seq	CTG		1	sORFs_org_Mouse	CDS sORF	Testis
453508	66	CTG ...	LLP ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Overlapping sORF Upstream	Liver
1134053	66	GTG ...	VGA ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
112943	63	TTG ...	LQS ...	Ribo-seq	TTG		4	sORFs_org_Mouse	InCDS Overlapping sORF	E14, Liver, MEF
140474	54	CTG ...	LSW ...	Ribo-seq	CTG		3	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, MEF, v6-5
43514	198	ATG ...	MLS ...	Ribo-seq	ATG		1	sORFs_org_Mouse	CDS sORF	Testis

641611

ENSMUST00000144576

Ufc1-204

nonsense_mediated_decay

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
388849	69	CTG ...	LAV ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Downstream NMD sORF	3T3, v6-5
364813	30	CTG ...	LES ...	Ribo-seq	CTG		2	sORFs_org_Mouse	InCDS NMD Overlapping sORF	3T3, Brain
348755	45	GTG ...	VVW ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain
343229	51	TTG ...	LQV ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain
947976	174	AAG ...	KTN ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	BMDC
942601	195	GTG ...	VSE ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	BMDC
328471	63	TTG ...	LEN ...	Ribo-seq	TTG	strong	2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3, v6-5
354326	30	CTG ...	LVH ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain
328039	54	CTG ...	LLQ ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain
106686	48	CTG ...	LIQ ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Downstream NMD sORF	3T3
8344	69	GTG ...	VEN ...	Ribo-seq	GTG		3	sORFs_org_Mouse	InCDS NMD Overlapping sORF	3T3, Brain, v6-5
325872	33	ATG ...	MLV ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain
308929	42	CTG ...	LFA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain
955992	42	ATA ...	ISV ...	Ribo-seq	ATA		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	BMDC
381958	33	GTG ...	VIQ ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Downstream NMD sORF	3T3
474311	84	TTG ...	LVS ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	v6-5
326485	63	GTG ...	VEV ...	Ribo-seq	GTG	strong	2	sORFs_org_Mouse	Downstream NMD sORF	3T3, v6-5
86366	33	CTG ...	LDG ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative Downstream NMD sORF	3T3, v6-5
40939	81	CTG ...	LGP ...	Ribo-seq	CTG	strong	2	sORFs_org_Mouse	Downstream NMD sORF	3T3, v6-5

ORFs

40 ORFs
5 known transcripts
88 ORF to known transcript associations

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF Length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Start codon

The start codon sequence of the ORF.

ORF annotations

A comma-separated list of all the annotations computed by our algorithm for the ORF. This list includes the annotations computed for the ORF for all transcripts. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of all the cell types in which the ORF has already been identified.

Transcripts

Display all the transcripts related to the entry.

364813

CTG...

LES...

CTG

Intronic
sORF
InCDS
NMD
Overlapping

B_cell, Brain, Liver,
3T3, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
8345	ENSMUST00000138974	Ufc1-203	retained_intron	Ribo-seq	moderate	3	sORFs_org_Mouse
641611	ENSMUST00000144576	Ufc1-204	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse
37508	ENSMUST00000152621	Ufc1-205	retained_intron	Ribo-seq		2	sORFs_org_Mouse

43514

198

ATG...

MLS...

ATG

CDS
sORF
Intronic

3T3, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
112944	ENSMUST00000111302	Ufc1-202	protein_coding	Ribo-seq		1	sORFs_org_Mouse
8345	ENSMUST00000138974	Ufc1-203	retained_intron	Predicted		1	Mackowiak2015
42940	ENSMUST00000080001	Ufc1-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse

8344

GTG...

VEN...

GTG

Intronic
sORF
InCDS
NMD
Overlapping

BMDC, E14, Spleen_B_cell,
Testis, 3T3, Brain,
v6-5, B_cell, Liver,
MEF, Skin_tumor

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
37508	ENSMUST00000152621	Ufc1-205	retained_intron	Ribo-seq		4	sORFs_org_Mouse
641611	ENSMUST00000144576	Ufc1-204	nonsense_mediated_decay	Ribo-seq		3	sORFs_org_Mouse
8345	ENSMUST00000138974	Ufc1-203	retained_intron	Ribo-seq	moderate	5	sORFs_org_Mouse

326626

114

TTG...

LAG...

TTG

Intronic
sORF

Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
8345	ENSMUST00000138974	Ufc1-203	retained_intron	Ribo-seq	moderate	1	sORFs_org_Mouse

43213

243

GTG...

VFP...

GTG

CDS
sORF

Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
42940	ENSMUST00000080001	Ufc1-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse

822987

ATG...

MIG...

ATG

Intronic
sORF

B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
8345	ENSMUST00000138974	Ufc1-203	retained_intron	Ribo-seq	moderate	1	sORFs_org_Mouse

106686

CTG...

LIQ...

CTG

Intronic
sORF
Downstream
NMD

BMDC, Liver, Spleen_B_cell,
B_cell, Brain, 3T3

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
37508	ENSMUST00000152621	Ufc1-205	retained_intron	Ribo-seq	moderate	3	sORFs_org_Mouse
8345	ENSMUST00000138974	Ufc1-203	retained_intron	Ribo-seq	moderate	2	sORFs_org_Mouse
641611	ENSMUST00000144576	Ufc1-204	nonsense_mediated_decay	Ribo-seq	moderate	1	sORFs_org_Mouse

325872

ATG...

MLV...

ATG

Alternative
InCDS
Overlapping
sORF
Intronic
NMD

E14, Glioma, Liver,
MEF, MESC, NSC,
Spleen_B_cell, Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
42940	ENSMUST00000080001	Ufc1-201	protein_coding	Ribo-seq	moderate	4	sORFs_org_Mouse Johnstone2016
37508	ENSMUST00000152621	Ufc1-205	retained_intron	Ribo-seq	moderate	1	sORFs_org_Mouse
8345	ENSMUST00000138974	Ufc1-203	retained_intron	Ribo-seq	moderate	3	sORFs_org_Mouse
641611	ENSMUST00000144576	Ufc1-204	nonsense_mediated_decay	Ribo-seq	moderate	1	sORFs_org_Mouse

140474

CTG...

LSW...

CTG

InCDS
Overlapping
sORF

3T3, BMDC, Brain,
MEF, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
112944	ENSMUST00000111302	Ufc1-202	protein_coding	Ribo-seq		2	sORFs_org_Mouse
42940	ENSMUST00000080001	Ufc1-201	protein_coding	Ribo-seq		3	sORFs_org_Mouse

388849

CTG...

LAV...

CTG

Downstream
NMD
sORF
Intronic

3T3, v6-5, BMDC,
Liver, Spleen_B_cell, B_cell,
Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
641611	ENSMUST00000144576	Ufc1-204	nonsense_mediated_decay	Ribo-seq	moderate	2	sORFs_org_Mouse
37508	ENSMUST00000152621	Ufc1-205	retained_intron	Ribo-seq	moderate	3	sORFs_org_Mouse
8345	ENSMUST00000138974	Ufc1-203	retained_intron	Ribo-seq	moderate	2	sORFs_org_Mouse

1172964

177

TTG...

LVS...

TTG

InCDS
Overlapping
sORF

Liver, E14, NSC,
R1E, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
112944	ENSMUST00000111302	Ufc1-202	protein_coding	Ribo-seq		1	sORFs_org_Mouse
42940	ENSMUST00000080001	Ufc1-201	protein_coding	Ribo-seq		4	sORFs_org_Mouse

774831

TTG...

LHC...

TTG

Intronic
sORF

B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
8345	ENSMUST00000138974	Ufc1-203	retained_intron	Ribo-seq		1	sORFs_org_Mouse

474311

TTG...

LVS...

TTG

Intronic
sORF
Alternative
InCDS
NMD
Overlapping

Spleen_B_cell, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
37508	ENSMUST00000152621	Ufc1-205	retained_intron	Ribo-seq		1	sORFs_org_Mouse
641611	ENSMUST00000144576	Ufc1-204	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

308929

CTG...

LFA...

CTG

Intronic
sORF
Alternative
InCDS
NMD
Overlapping

B_cell, Brain, Liver,
MEF, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
8345	ENSMUST00000138974	Ufc1-203	retained_intron	Ribo-seq	weak	5	sORFs_org_Mouse
37508	ENSMUST00000152621	Ufc1-205	retained_intron	Ribo-seq		1	sORFs_org_Mouse
641611	ENSMUST00000144576	Ufc1-204	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

299481

ATG...

MWR...

ATG

Intronic
sORF
Alternative
InCDS
Overlapping

B_cell, Brain, Liver,
MEF, Spleen_B_cell, Neutrophil,
NSC, R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
8345	ENSMUST00000138974	Ufc1-203	retained_intron	Ribo-seq	moderate	4	sORFs_org_Mouse
37508	ENSMUST00000152621	Ufc1-205	retained_intron	Ribo-seq		1	sORFs_org_Mouse
42940	ENSMUST00000080001	Ufc1-201	protein_coding	Ribo-seq		4	sORFs_org_Mouse

348755

GTG...

VVW...

GTG

Alternative
InCDS
NMD
Overlapping
sORF
Intronic

Brain, E14, MEF,
NSC, Liver

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
641611	ENSMUST00000144576	Ufc1-204	nonsense_mediated_decay	Ribo-seq	moderate	1	sORFs_org_Mouse
42940	ENSMUST00000080001	Ufc1-201	protein_coding	Ribo-seq	moderate	3	sORFs_org_Mouse
8345	ENSMUST00000138974	Ufc1-203	retained_intron	Ribo-seq	moderate	3	sORFs_org_Mouse

326485

GTG...

VEV...

GTG

Intronic
sORF
Downstream
NMD

BMDC, Liver, Spleen_B_cell,
B_cell, Brain, 3T3,
v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
37508	ENSMUST00000152621	Ufc1-205	retained_intron	Ribo-seq	strong	3	sORFs_org_Mouse
8345	ENSMUST00000138974	Ufc1-203	retained_intron	Ribo-seq	strong	2	sORFs_org_Mouse
641611	ENSMUST00000144576	Ufc1-204	nonsense_mediated_decay	Ribo-seq	strong	2	sORFs_org_Mouse

343229

TTG...

LQV...

TTG

Alternative
InCDS
NMD
Overlapping
sORF
Intronic

Brain, Liver

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
641611	ENSMUST00000144576	Ufc1-204	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse
37508	ENSMUST00000152621	Ufc1-205	retained_intron	Ribo-seq		1	sORFs_org_Mouse
8345	ENSMUST00000138974	Ufc1-203	retained_intron	Ribo-seq	weak	1	sORFs_org_Mouse

42939

204

GTG...

VSM...

GTG

CDS
sORF

3T3, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
112944	ENSMUST00000111302	Ufc1-202	protein_coding	Ribo-seq		1	sORFs_org_Mouse
42940	ENSMUST00000080001	Ufc1-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse

381958

GTG...

VIQ...

GTG

Intronic
sORF
Downstream
NMD

B_cell, Brain, Liver,
Spleen_B_cell, 3T3

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
8345	ENSMUST00000138974	Ufc1-203	retained_intron	Ribo-seq	moderate	2	sORFs_org_Mouse
37508	ENSMUST00000152621	Ufc1-205	retained_intron	Ribo-seq	moderate	2	sORFs_org_Mouse
641611	ENSMUST00000144576	Ufc1-204	nonsense_mediated_decay	Ribo-seq	moderate	1	sORFs_org_Mouse

947976

174

AAG...

KTN...

AAG

Alternative
InCDS
NMD
Overlapping
sORF

BMDC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
641611	ENSMUST00000144576	Ufc1-204	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

942601

195

GTG...

VSE...

GTG

Alternative
InCDS
NMD
Overlapping
sORF

BMDC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
641611	ENSMUST00000144576	Ufc1-204	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

414666

ATG...

MIG...

ATG

Alternative
sORF
Upstream

3T3, C2C12, Glioma,
Liver, MEF, MESC,
R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
42940	ENSMUST00000080001	Ufc1-201	protein_coding	Ribo-seq		4	sORFs_org_Mouse Johnstone2016

1288179

AGG...

RPL...

AGG

Intronic
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
37508	ENSMUST00000152621	Ufc1-205	retained_intron	Ribo-seq	moderate	1	sORFs_org_Mouse

399332

CTG...

LII...

CTG

Intronic
sORF

Brain, Liver, BMDC,
Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
8345	ENSMUST00000138974	Ufc1-203	retained_intron	Ribo-seq	weak	2	sORFs_org_Mouse
37508	ENSMUST00000152621	Ufc1-205	retained_intron	Ribo-seq		2	sORFs_org_Mouse

328471

TTG...

LEN...

TTG

Alternative
InCDS
NMD
Overlapping
sORF
Intronic

3T3, v6-5, Brain,
E14, MEF, NSC,
R1E, Spleen_B_cell, Liver

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
641611	ENSMUST00000144576	Ufc1-204	nonsense_mediated_decay	Ribo-seq	strong	2	sORFs_org_Mouse
42940	ENSMUST00000080001	Ufc1-201	protein_coding	Ribo-seq		5	sORFs_org_Mouse
37508	ENSMUST00000152621	Ufc1-205	retained_intron	Ribo-seq	strong	1	sORFs_org_Mouse
8345	ENSMUST00000138974	Ufc1-203	retained_intron	Ribo-seq	strong	2	sORFs_org_Mouse

354326

CTG...

LVH...

CTG

Alternative
InCDS
NMD
Overlapping
sORF
Intronic

Brain, E14, MEF,
NSC, Liver

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
641611	ENSMUST00000144576	Ufc1-204	nonsense_mediated_decay	Ribo-seq	strong	1	sORFs_org_Mouse
42940	ENSMUST00000080001	Ufc1-201	protein_coding	Ribo-seq	strong	3	sORFs_org_Mouse
8345	ENSMUST00000138974	Ufc1-203	retained_intron	Ribo-seq	strong	3	sORFs_org_Mouse

328039

CTG...

LLQ...

CTG

Intronic
sORF
Alternative
InCDS
NMD
Overlapping

Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
8345	ENSMUST00000138974	Ufc1-203	retained_intron	Ribo-seq	weak	1	sORFs_org_Mouse
641611	ENSMUST00000144576	Ufc1-204	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

112943

TTG...

LQS...

TTG

InCDS
Overlapping
sORF

3T3, B_cell, BMDC,
Brain, Spleen_B_cell, E14,
Liver, MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
112944	ENSMUST00000111302	Ufc1-202	protein_coding	Ribo-seq		5	sORFs_org_Mouse
42940	ENSMUST00000080001	Ufc1-201	protein_coding	Ribo-seq		4	sORFs_org_Mouse

130518

156

TTG...

LEN...

TTG

InCDS
Overlapping
sORF

3T3, BMDC, Brain,
Liver, Spleen_B_cell, E14,
MEF, NSC, R1E,
v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
112944	ENSMUST00000111302	Ufc1-202	protein_coding	Ribo-seq		5	sORFs_org_Mouse
42940	ENSMUST00000080001	Ufc1-201	protein_coding	Ribo-seq		5	sORFs_org_Mouse

40939

CTG...

LGP...

CTG

Intronic
sORF
Downstream
NMD

B_cell, Brain, BMDC,
Liver, Spleen_B_cell, Testis,
3T3, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
8345	ENSMUST00000138974	Ufc1-203	retained_intron	Ribo-seq	strong	2	sORFs_org_Mouse
37508	ENSMUST00000152621	Ufc1-205	retained_intron	Ribo-seq	moderate	4	sORFs_org_Mouse
641611	ENSMUST00000144576	Ufc1-204	nonsense_mediated_decay	Ribo-seq	strong	2	sORFs_org_Mouse

48359

213

CTG...

LSH...

CTG

CDS
sORF

3T3, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
112944	ENSMUST00000111302	Ufc1-202	protein_coding	Ribo-seq		1	sORFs_org_Mouse
42940	ENSMUST00000080001	Ufc1-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse

139338

CTG...

LLR...

CTG

InCDS
Overlapping
sORF

E14, Liver, MEF,
R1E, v6-5, 3T3,
BMDC, Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
42940	ENSMUST00000080001	Ufc1-201	protein_coding	Ribo-seq		6	sORFs_org_Mouse
112944	ENSMUST00000111302	Ufc1-202	protein_coding	Ribo-seq		3	sORFs_org_Mouse

1134053

GTG...

VGA...

GTG

Intronic
sORF
Alternative
InCDS
Overlapping

E14, v6-5, MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
37508	ENSMUST00000152621	Ufc1-205	retained_intron	Ribo-seq		1	sORFs_org_Mouse
112944	ENSMUST00000111302	Ufc1-202	protein_coding	Ribo-seq		1	sORFs_org_Mouse
42940	ENSMUST00000080001	Ufc1-201	protein_coding	Ribo-seq		2	sORFs_org_Mouse

955992

ATA...

ISV...

ATA

Alternative
InCDS
NMD
Overlapping
sORF

BMDC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
641611	ENSMUST00000144576	Ufc1-204	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

453508

CTG...

LLP...

CTG

Intronic
sORF
Overlapping
Upstream

Spleen_B_cell, B_cell, Liver

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
37508	ENSMUST00000152621	Ufc1-205	retained_intron	Ribo-seq	weak	1	sORFs_org_Mouse
112944	ENSMUST00000111302	Ufc1-202	protein_coding	Ribo-seq	weak	2	sORFs_org_Mouse
42940	ENSMUST00000080001	Ufc1-201	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse

86366

CTG...

LDG...

CTG

Intronic
sORF
Alternative
Downstream
NMD

BMDC, Spleen_B_cell, Testis,
B_cell, Brain, Liver,
3T3, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
37508	ENSMUST00000152621	Ufc1-205	retained_intron	Ribo-seq		3	sORFs_org_Mouse
8345	ENSMUST00000138974	Ufc1-203	retained_intron	Ribo-seq	strong	3	sORFs_org_Mouse
641611	ENSMUST00000144576	Ufc1-204	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse

1275025

138

GTG...

VQR...

GTG

Intronic
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
37508	ENSMUST00000152621	Ufc1-205	retained_intron	Ribo-seq		1	sORFs_org_Mouse

103643

CTG...

LVQ...

CTG

Intronic
sORF

Brain, Liver

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
37508	ENSMUST00000152621	Ufc1-205	retained_intron	Ribo-seq	moderate	2	sORFs_org_Mouse

1292331

177

CTG...

LKT...

CTG

Intronic
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
37508	ENSMUST00000152621	Ufc1-205	retained_intron	Ribo-seq		1	sORFs_org_Mouse

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