Gene NCBI:57317 | MetamORF

Gene

ID CARD

NCBI:57317

Aliases

5730499P16Rik
AW550192, ENSMUSG00000028911, MGI:1890577
MNCb-2616, NCBI:57317, OFF:Srsf4
Sfrs4, SRp75, Srsf4

Chromosome

Transcripts

42 ORFs
4 known transcripts
80 ORF to known transcript associations

MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

ORFs

Display all the transcripts related to the entry.

57291

ENSMUST00000134943

Srsf4-204

nonsense_mediated_decay

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
509602	57	ATG ...	MAL ...	Ribo-seq	ATG	strong	2	sORFs_org_Mouse	NMD sORF	3T3, MEF
512404	42	TTG ...	LMI ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	NMD sORF	3T3, MEF
550328	90	GTG ...	VAE ...	Ribo-seq	GTG	strong	3	sORFs_org_Mouse	NMD sORF	3T3, Brain, v6-5
547026	111	GTG ...	VDM ...	Ribo-seq	GTG	strong	3	sORFs_org_Mouse	NMD sORF	3T3, Brain, v6-5
160591	51	TTG ...	LWS ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	NMD sORF	3T3, MEF
553171	66	TTG ...	LLS ...	Ribo-seq	TTG		1	sORFs_org_Mouse	NMD sORF	3T3
150010	33	ATG ...	MLT ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	NMD sORF	3T3
551606	105	ATG ...	MVI ...	Ribo-seq	ATG	strong	4	sORFs_org_Mouse	NMD sORF	3T3, Brain, E14, v6-5
547547	36	ATG ...	MAA ...	Ribo-seq	ATG		1	sORFs_org_Mouse	NMD sORF	3T3
148225	39	ATG ...	MQM ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	NMD sORF	3T3
57290	54	GTG ...	VEN ...	Ribo-seq	GTG		4	sORFs_org_Mouse	NMD sORF	3T3, E14, Testis, v6-5
554714	81	GTG ...	VAS ...	Ribo-seq	GTG		1	sORFs_org_Mouse	NMD sORF	3T3
554283	126	TTG ...	LNL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	NMD sORF	3T3
510427	30	GTG ...	VMQ ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	NMD sORF	3T3, MEF
553537	63	TTG ...	LST ...	Ribo-seq	TTG		1	sORFs_org_Mouse	NMD sORF	3T3
512633	39	ATG ...	MIC ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	NMD sORF	3T3, MEF
826085	90	GTG ...	VFF ...	Ribo-seq	GTG		1	sORFs_org_Mouse	NMD sORF	v6-5
547004	42	TTG ...	LWR ...	Ribo-seq	TTG	weak	3	sORFs_org_Mouse	NMD sORF	3T3, Brain, v6-5
551799	45	TTG ...	LSS ...	Ribo-seq	TTG		4	sORFs_org_Mouse	NMD sORF	3T3, E14, MEF, v6-5

55737

ENSMUST00000030743

Srsf4-201

retained_intron

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
823311	120	CTG ...	LCG ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	B_cell
59257	147	GTG ...	VSY ...	Ribo-seq	GTG		5	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, Brain, R1E, Testis
824627	180	GTG ...	VEF ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	B_cell, R1E
1226944	45	AGG ...	RSP ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	Intronic sORF	E14
150010	33	ATG ...	MLT ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Intronic sORF	B_cell
550328	90	GTG ...	VAE ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	Intronic sORF	B_cell
825694	99	ATG ...	MPR ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Intronic sORF	B_cell
554714	81	GTG ...	VAS ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	B_cell
55736	159	GTG ...	VIE ...	Ribo-seq	GTG		5	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, Brain, R1E, Testis
553537	63	TTG ...	LST ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	B_cell
826085	90	GTG ...	VFF ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	B_cell
509602	57	ATG ...	MAL ...	Ribo-seq	ATG	strong	2	sORFs_org_Mouse	Intronic sORF	B_cell, MEF
547026	111	GTG ...	VDM ...	Ribo-seq	GTG	strong	3	sORFs_org_Mouse	Intronic sORF	B_cell, E14, R1E
510427	30	GTG ...	VMQ ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	Intronic sORF	B_cell, MEF
551606	105	ATG ...	MVI ...	Ribo-seq	ATG	strong	2	sORFs_org_Mouse	Intronic sORF	B_cell, R1E
160591	51	TTG ...	LWS ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Intronic sORF	B_cell, MEF
509370	30	CTG ...	LKS ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	B_cell
56646	255	GTG ...	VSK ...	Ribo-seq	GTG	weak	6	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, Brain, E14, R1E, Testis
1226425	297	AAG ...	KKK ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	Intronic sORF	E14
547004	42	TTG ...	LWR ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Intronic sORF	B_cell
512404	42	TTG ...	LMI ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Intronic sORF	B_cell, MEF
553171	66	TTG ...	LLS ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	B_cell
512633	39	ATG ...	MIC ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	Intronic sORF	B_cell, MEF
57290	54	GTG ...	VEN ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	B_cell, R1E
1231514	201	ATG ...	MSR ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Intronic sORF	E14
56890	201	GTG ...	VTY ...	Ribo-seq	GTG		5	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, Brain, R1E, Testis
547547	36	ATG ...	MAA ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Intronic sORF	B_cell
824411	165	CTG ...	LRD ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	B_cell, R1E
57497	111	CTG ...	LDG ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, Brain, R1E, Testis
1225446	36	ACG ...	TEL ...	Ribo-seq	ACG	moderate	1	sORFs_org_Mouse	Intronic sORF	E14
825626	135	CTG ...	LNG ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	B_cell, R1E
148225	39	ATG ...	MQM ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Intronic sORF	B_cell
1226638	57	AGG ...	RSA ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	Intronic sORF	E14
551799	45	TTG ...	LSS ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Intronic sORF	B_cell, MEF, R1E
55983	120	TTG ...	LEK ...	Ribo-seq	TTG		5	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, Brain, R1E, Testis
822640	162	CTG ...	LTR ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	B_cell
554283	126	TTG ...	LNL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	B_cell

148226

ENSMUST00000053819

Srsf4-202

protein_coding

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
148225	39	ATG ...	MQM ...	Ribo-seq	ATG	weak	5	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	Brain, Glioma, Liver, MEF, MESC, Neutrophil, Spleen_B_cell
512404	42	TTG ...	LMI ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	Spleen_B_cell
160591	51	TTG ...	LWS ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, Spleen_B_cell
510427	30	GTG ...	VMQ ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	Spleen_B_cell
150010	33	ATG ...	MLT ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF
550328	90	GTG ...	VAE ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
509602	57	ATG ...	MAL ...	Ribo-seq	ATG	strong	2	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	Glioma, Liver, MEF, MESC, Spleen_B_cell
509370	30	CTG ...	LKS ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Spleen_B_cell
512756	102	CTG ...	LRG ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	Brain, Spleen_B_cell
158489	51	ATG ...	MWS ...	Ribo-seq	ATG	moderate	11	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, Glioma, Liver, MEF, MESC, Neutrophil, NSC
547004	42	TTG ...	LWR ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
553068	42	CTG ...	LPP ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, B_cell
512633	39	ATG ...	MIC ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	Spleen_B_cell

1058856

ENSMUST00000129966

Srsf4-203

nonsense_mediated_decay

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
824411	165	CTG ...	LRD ...	Ribo-seq	CTG		2	sORFs_org_Mouse	NMD sORF	Brain, Neutrophil
1230113	33	AAG ...	KIL ...	Ribo-seq	AAG		1	sORFs_org_Mouse	NMD sORF	E14
509602	57	ATG ...	MAL ...	Ribo-seq	ATG	strong	2	sORFs_org_Mouse	NMD sORF	Brain, MEF
824627	180	GTG ...	VEF ...	Ribo-seq	GTG		2	sORFs_org_Mouse	NMD sORF	Brain, Neutrophil
547547	36	ATG ...	MAA ...	Ribo-seq	ATG		1	sORFs_org_Mouse	NMD sORF	Neutrophil
160591	51	TTG ...	LWS ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	NMD sORF	Brain, MEF
1887794	114	CTG ...	LLC ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	NMD sORF	R1E
512404	42	TTG ...	LMI ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	NMD sORF	Brain, MEF
823311	120	CTG ...	LCG ...	Ribo-seq	CTG		1	sORFs_org_Mouse	NMD sORF	Brain
510427	30	GTG ...	VMQ ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	NMD sORF	MEF
512633	39	ATG ...	MIC ...	Ribo-seq	ATG	weak	3	sORFs_org_Mouse	NMD sORF	Brain, MEF, NSC

ORFs

42 ORFs
4 known transcripts
80 ORF to known transcript associations

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF Length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Start codon

The start codon sequence of the ORF.

ORF annotations

A comma-separated list of all the annotations computed by our algorithm for the ORF. This list includes the annotations computed for the ORF for all transcripts. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of all the cell types in which the ORF has already been identified.

Transcripts

Display all the transcripts related to the entry.

509602

ATG...

MAL...

ATG

NMD
sORF
Intronic
InCDS
Overlapping

3T3, MEF, Brain,
B_cell, Glioma, Liver,
MESC, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
57291	ENSMUST00000134943	Srsf4-204	nonsense_mediated_decay	Ribo-seq	strong	2	sORFs_org_Mouse
1058856	ENSMUST00000129966	Srsf4-203	nonsense_mediated_decay	Ribo-seq	strong	2	sORFs_org_Mouse
55737	ENSMUST00000030743	Srsf4-201	retained_intron	Ribo-seq	strong	2	sORFs_org_Mouse
148226	ENSMUST00000053819	Srsf4-202	protein_coding	Ribo-seq	strong	2	sORFs_org_Mouse Johnstone2016

823311

120

CTG...

LCG...

CTG

Intronic
sORF
NMD

B_cell, Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
55737	ENSMUST00000030743	Srsf4-201	retained_intron	Ribo-seq		1	sORFs_org_Mouse
1058856	ENSMUST00000129966	Srsf4-203	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

512404

TTG...

LMI...

TTG

NMD
sORF
InCDS
Overlapping
Intronic

3T3, MEF, Spleen_B_cell,
B_cell, Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
57291	ENSMUST00000134943	Srsf4-204	nonsense_mediated_decay	Ribo-seq	moderate	2	sORFs_org_Mouse
148226	ENSMUST00000053819	Srsf4-202	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse
55737	ENSMUST00000030743	Srsf4-201	retained_intron	Ribo-seq	moderate	2	sORFs_org_Mouse
1058856	ENSMUST00000129966	Srsf4-203	nonsense_mediated_decay	Ribo-seq	moderate	2	sORFs_org_Mouse

148225

ATG...

MQM...

ATG

Alternative
InCDS
Overlapping
sORF
NMD
Intronic

Brain, Glioma, Liver,
MEF, MESC, Neutrophil,
Spleen_B_cell, 3T3, B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
148226	ENSMUST00000053819	Srsf4-202	protein_coding	Ribo-seq	weak	5	sORFs_org_Mouse Johnstone2016
57291	ENSMUST00000134943	Srsf4-204	nonsense_mediated_decay	Ribo-seq	weak	1	sORFs_org_Mouse
55737	ENSMUST00000030743	Srsf4-201	retained_intron	Ribo-seq	weak	1	sORFs_org_Mouse

550328

GTG...

VAE...

GTG

NMD
sORF
Intronic
Alternative
InCDS
Overlapping

3T3, Brain, v6-5,
B_cell, E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
57291	ENSMUST00000134943	Srsf4-204	nonsense_mediated_decay	Ribo-seq	strong	3	sORFs_org_Mouse
55737	ENSMUST00000030743	Srsf4-201	retained_intron	Ribo-seq	strong	1	sORFs_org_Mouse
148226	ENSMUST00000053819	Srsf4-202	protein_coding	Ribo-seq	strong	1	sORFs_org_Mouse

59257

147

GTG...

VSY...

GTG

Intronic
sORF

3T3, B_cell, Brain,
R1E, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
55737	ENSMUST00000030743	Srsf4-201	retained_intron	Ribo-seq		5	sORFs_org_Mouse

824627

180

GTG...

VEF...

GTG

Intronic
sORF
NMD

B_cell, R1E, Brain,
Neutrophil

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
55737	ENSMUST00000030743	Srsf4-201	retained_intron	Ribo-seq		2	sORFs_org_Mouse
1058856	ENSMUST00000129966	Srsf4-203	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse

1226944

AGG...

RSP...

AGG

Intronic
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
55737	ENSMUST00000030743	Srsf4-201	retained_intron	Ribo-seq	weak	1	sORFs_org_Mouse

160591

TTG...

LWS...

TTG

InCDS
Overlapping
sORF
NMD
Intronic

Brain, Spleen_B_cell, 3T3,
MEF, B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
148226	ENSMUST00000053819	Srsf4-202	protein_coding	Ribo-seq	moderate	2	sORFs_org_Mouse
57291	ENSMUST00000134943	Srsf4-204	nonsense_mediated_decay	Ribo-seq	moderate	2	sORFs_org_Mouse
1058856	ENSMUST00000129966	Srsf4-203	nonsense_mediated_decay	Ribo-seq	moderate	2	sORFs_org_Mouse
55737	ENSMUST00000030743	Srsf4-201	retained_intron	Ribo-seq	moderate	2	sORFs_org_Mouse

547026

111

GTG...

VDM...

GTG

NMD
sORF
Intronic

3T3, Brain, v6-5,
B_cell, E14, R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
57291	ENSMUST00000134943	Srsf4-204	nonsense_mediated_decay	Ribo-seq	strong	3	sORFs_org_Mouse
55737	ENSMUST00000030743	Srsf4-201	retained_intron	Ribo-seq	strong	3	sORFs_org_Mouse

150010

ATG...

MLT...

ATG

Intronic
sORF
NMD
Alternative
InCDS
Overlapping

B_cell, 3T3, Brain,
MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
55737	ENSMUST00000030743	Srsf4-201	retained_intron	Ribo-seq	weak	1	sORFs_org_Mouse
57291	ENSMUST00000134943	Srsf4-204	nonsense_mediated_decay	Ribo-seq	weak	1	sORFs_org_Mouse
148226	ENSMUST00000053819	Srsf4-202	protein_coding	Ribo-seq	weak	2	sORFs_org_Mouse

824411

165

CTG...

LRD...

CTG

NMD
sORF
Intronic

Brain, Neutrophil, B_cell,
R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
1058856	ENSMUST00000129966	Srsf4-203	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse
55737	ENSMUST00000030743	Srsf4-201	retained_intron	Ribo-seq		2	sORFs_org_Mouse

510427

GTG...

VMQ...

GTG

InCDS
Overlapping
sORF
Intronic
NMD

Spleen_B_cell, B_cell, MEF,
3T3

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
148226	ENSMUST00000053819	Srsf4-202	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse
55737	ENSMUST00000030743	Srsf4-201	retained_intron	Ribo-seq	weak	2	sORFs_org_Mouse
57291	ENSMUST00000134943	Srsf4-204	nonsense_mediated_decay	Ribo-seq	weak	2	sORFs_org_Mouse
1058856	ENSMUST00000129966	Srsf4-203	nonsense_mediated_decay	Ribo-seq	weak	1	sORFs_org_Mouse

553171

TTG...

LLS...

TTG

NMD
sORF
Intronic

3T3, B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
57291	ENSMUST00000134943	Srsf4-204	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse
55737	ENSMUST00000030743	Srsf4-201	retained_intron	Ribo-seq		1	sORFs_org_Mouse

825694

ATG...

MPR...

ATG

Intronic
sORF

B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
55737	ENSMUST00000030743	Srsf4-201	retained_intron	Ribo-seq		1	sORFs_org_Mouse

554714

GTG...

VAS...

GTG

Intronic
sORF
NMD

B_cell, 3T3

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
55737	ENSMUST00000030743	Srsf4-201	retained_intron	Ribo-seq		1	sORFs_org_Mouse
57291	ENSMUST00000134943	Srsf4-204	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

55736

159

GTG...

VIE...

GTG

Intronic
sORF

3T3, B_cell, Brain,
R1E, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
55737	ENSMUST00000030743	Srsf4-201	retained_intron	Ribo-seq		5	sORFs_org_Mouse

1230113

AAG...

KIL...

AAG

NMD
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
1058856	ENSMUST00000129966	Srsf4-203	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

551606

105

ATG...

MVI...

ATG

NMD
sORF
Intronic

3T3, Brain, E14,
v6-5, B_cell, R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
57291	ENSMUST00000134943	Srsf4-204	nonsense_mediated_decay	Ribo-seq	strong	4	sORFs_org_Mouse
55737	ENSMUST00000030743	Srsf4-201	retained_intron	Ribo-seq	strong	2	sORFs_org_Mouse

553537

TTG...

LST...

TTG

Intronic
sORF
NMD

B_cell, 3T3

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
55737	ENSMUST00000030743	Srsf4-201	retained_intron	Ribo-seq		1	sORFs_org_Mouse
57291	ENSMUST00000134943	Srsf4-204	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

826085

GTG...

VFF...

GTG

Intronic
sORF
NMD

B_cell, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
55737	ENSMUST00000030743	Srsf4-201	retained_intron	Ribo-seq		1	sORFs_org_Mouse
57291	ENSMUST00000134943	Srsf4-204	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

547547

ATG...

MAA...

ATG

NMD
sORF
Intronic

Neutrophil, 3T3, B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
1058856	ENSMUST00000129966	Srsf4-203	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse
57291	ENSMUST00000134943	Srsf4-204	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse
55737	ENSMUST00000030743	Srsf4-201	retained_intron	Ribo-seq		1	sORFs_org_Mouse

509370

CTG...

LKS...

CTG

Intronic
sORF
Alternative
InCDS
Overlapping

B_cell, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
55737	ENSMUST00000030743	Srsf4-201	retained_intron	Ribo-seq	moderate	1	sORFs_org_Mouse
148226	ENSMUST00000053819	Srsf4-202	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse

56646

255

GTG...

VSK...

GTG

Intronic
sORF

3T3, B_cell, Brain,
E14, R1E, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
55737	ENSMUST00000030743	Srsf4-201	retained_intron	Ribo-seq	weak	6	sORFs_org_Mouse

1226425

297

AAG...

KKK...

AAG

Intronic
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
55737	ENSMUST00000030743	Srsf4-201	retained_intron	Ribo-seq	moderate	1	sORFs_org_Mouse

547004

TTG...

LWR...

TTG

Intronic
sORF
Alternative
InCDS
Overlapping
NMD

B_cell, MEF, 3T3,
Brain, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
55737	ENSMUST00000030743	Srsf4-201	retained_intron	Ribo-seq	weak	1	sORFs_org_Mouse
148226	ENSMUST00000053819	Srsf4-202	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse
57291	ENSMUST00000134943	Srsf4-204	nonsense_mediated_decay	Ribo-seq	weak	3	sORFs_org_Mouse

1887794

114

CTG...

LLC...

CTG

NMD
sORF

R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
1058856	ENSMUST00000129966	Srsf4-203	nonsense_mediated_decay	Ribo-seq	moderate	1	sORFs_org_Mouse

57290

GTG...

VEN...

GTG

NMD
sORF
Intronic

3T3, E14, Testis,
v6-5, B_cell, R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
57291	ENSMUST00000134943	Srsf4-204	nonsense_mediated_decay	Ribo-seq		4	sORFs_org_Mouse
55737	ENSMUST00000030743	Srsf4-201	retained_intron	Ribo-seq		2	sORFs_org_Mouse

512633

ATG...

MIC...

ATG

Intronic
sORF
NMD
InCDS
Overlapping

B_cell, MEF, Brain,
NSC, 3T3, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
55737	ENSMUST00000030743	Srsf4-201	retained_intron	Ribo-seq	weak	2	sORFs_org_Mouse
1058856	ENSMUST00000129966	Srsf4-203	nonsense_mediated_decay	Ribo-seq	weak	3	sORFs_org_Mouse
57291	ENSMUST00000134943	Srsf4-204	nonsense_mediated_decay	Ribo-seq	weak	2	sORFs_org_Mouse
148226	ENSMUST00000053819	Srsf4-202	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse

512756

102

CTG...

LRG...

CTG

Alternative
Overlapping
sORF
Upstream

Brain, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
148226	ENSMUST00000053819	Srsf4-202	protein_coding	Ribo-seq	weak	2	sORFs_org_Mouse

554283

126

TTG...

LNL...

TTG

NMD
sORF
Intronic

3T3, B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
57291	ENSMUST00000134943	Srsf4-204	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse
55737	ENSMUST00000030743	Srsf4-201	retained_intron	Ribo-seq		1	sORFs_org_Mouse

1231514

201

ATG...

MSR...

ATG

Intronic
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
55737	ENSMUST00000030743	Srsf4-201	retained_intron	Ribo-seq	weak	1	sORFs_org_Mouse

56890

201

GTG...

VTY...

GTG

Intronic
sORF

3T3, B_cell, Brain,
R1E, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
55737	ENSMUST00000030743	Srsf4-201	retained_intron	Ribo-seq		5	sORFs_org_Mouse

158489

ATG...

MWS...

ATG

Alternative
InCDS
Overlapping
sORF

3T3, B_cell, Brain,
Glioma, Liver, MEF,
MESC, Neutrophil, NSC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
148226	ENSMUST00000053819	Srsf4-202	protein_coding	Ribo-seq	moderate	11	sORFs_org_Mouse Johnstone2016

57497

111

CTG...

LDG...

CTG

Intronic
sORF

3T3, B_cell, Brain,
R1E, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
55737	ENSMUST00000030743	Srsf4-201	retained_intron	Ribo-seq		5	sORFs_org_Mouse

1225446

ACG...

TEL...

ACG

Intronic
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
55737	ENSMUST00000030743	Srsf4-201	retained_intron	Ribo-seq	moderate	1	sORFs_org_Mouse

825626

135

CTG...

LNG...

CTG

Intronic
sORF

B_cell, R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
55737	ENSMUST00000030743	Srsf4-201	retained_intron	Ribo-seq		2	sORFs_org_Mouse

1226638

AGG...

RSA...

AGG

Intronic
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
55737	ENSMUST00000030743	Srsf4-201	retained_intron	Ribo-seq	weak	1	sORFs_org_Mouse

553068

CTG...

LPP...

CTG

Alternative
Overlapping
sORF
Upstream

3T3, B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
148226	ENSMUST00000053819	Srsf4-202	protein_coding	Ribo-seq	weak	2	sORFs_org_Mouse

551799

TTG...

LSS...

TTG

Intronic
sORF
NMD

B_cell, MEF, R1E,
3T3, E14, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
55737	ENSMUST00000030743	Srsf4-201	retained_intron	Ribo-seq		3	sORFs_org_Mouse
57291	ENSMUST00000134943	Srsf4-204	nonsense_mediated_decay	Ribo-seq		4	sORFs_org_Mouse

55983

120

TTG...

LEK...

TTG

Intronic
sORF

3T3, B_cell, Brain,
R1E, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
55737	ENSMUST00000030743	Srsf4-201	retained_intron	Ribo-seq		5	sORFs_org_Mouse

822640

162

CTG...

LTR...

CTG

Intronic
sORF

B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
55737	ENSMUST00000030743	Srsf4-201	retained_intron	Ribo-seq	moderate	1	sORFs_org_Mouse

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