Gene NCBI:56771 | MetamORF

Gene

ID CARD

NCBI:56771

Aliases

1110011O05Rik
2410115I17Rik, AU018348, ENSMUSG00000092558
Med20, MGI:1929648, NCBI:56771
OFF:Med20, Trfp

Chromosome

Transcripts

26 ORFs
4 known transcripts
44 ORF to known transcript associations

MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

ORFs

Display all the transcripts related to the entry.

704591

ENSMUST00000024778

Med20-201

protein_coding

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
708981	45	TTG ...	LGT ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
479296	45	TTG ...	LRP ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
480900	30	CTG ...	LTP ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
480657	48	ATG ...	MAL ...	Ribo-seq	ATG	strong	2	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, Glioma, Liver, MEF, MESC
479705	30	ATG ...	MRS ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, Glioma, Liver, MEF, MESC
38248	39	TTG ...	LEA ...	Ribo-seq	TTG	strong	1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3
482800	63	GTG ...	VPR ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
480649	33	TTG ...	LLT ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3

478378

ENSMUST00000149893

Med20-204

retained_intron

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
38494	222	CTG ...	LSC ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	Spleen_B_cell
480649	33	TTG ...	LLT ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	Intronic sORF	Brain, Spleen_B_cell
479468	63	TTG ...	LPS ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Intronic sORF	Brain, Spleen_B_cell
37124	117	GTG ...	VEL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Spleen_B_cell
37644	162	GTG ...	VLM ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Spleen_B_cell
36940	255	CTG ...	LMY ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Spleen_B_cell
37289	147	GTG ...	VAE ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Spleen_B_cell
480900	30	CTG ...	LTP ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Intronic sORF	Brain, Spleen_B_cell
38248	39	TTG ...	LEA ...	Ribo-seq	TTG	strong	1	sORFs_org_Mouse	Intronic sORF	Spleen_B_cell
37715	246	GTG ...	VMH ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Intronic sORF	Spleen_B_cell
37194	96	CTG ...	LEM ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Spleen_B_cell
482800	63	GTG ...	VPR ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Spleen_B_cell
480657	48	ATG ...	MAL ...	Ribo-seq	ATG	strong	2	sORFs_org_Mouse	Intronic sORF	Brain, Spleen_B_cell
38444	57	GTG ...	VDC ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Spleen_B_cell
36535	162	GTG ...	VSQ ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Spleen_B_cell
36107	153	GTG ...	VKL ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Spleen_B_cell
482687	54	TTG ...	LRM ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	Intronic sORF	Brain, Spleen_B_cell
36595	69	GTG ...	VKV ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Intronic sORF	Spleen_B_cell
479296	45	TTG ...	LRP ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Spleen_B_cell

795891

ENSMUST00000138638

Med20-203

retained_intron

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
38248	39	TTG ...	LEA ...	Ribo-seq	TTG	strong	1	sORFs_org_Mouse	Intronic sORF	B_cell
36090	198	GTG ...	VVA ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Intronic sORF	B_cell
795890	198	GTG ...	VCP ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	B_cell
37124	117	GTG ...	VEL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	B_cell
708981	45	TTG ...	LGT ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Intronic sORF	B_cell
37289	147	GTG ...	VAE ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	B_cell, R1E
36535	162	GTG ...	VSQ ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	B_cell, R1E
37194	96	CTG ...	LEM ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	B_cell
479705	30	ATG ...	MRS ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Intronic sORF	B_cell
37116	216	GTG ...	VEY ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Intronic sORF	B_cell

381225

ENSMUST00000133855

Med20-202

retained_intron

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
37194	96	CTG ...	LEM ...	Ribo-seq	CTG	strong	2	sORFs_org_Mouse	Intronic sORF	Brain, Liver
37289	147	GTG ...	VAE ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Intronic sORF	Brain, Liver
1152662	84	CTG ...	LSS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	E14
37124	117	GTG ...	VEL ...	Ribo-seq	GTG	strong	2	sORFs_org_Mouse	Intronic sORF	Brain, Liver
954601	93	CTG ...	LES ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	E14, MEF
36535	162	GTG ...	VSQ ...	Ribo-seq	GTG	weak	3	sORFs_org_Mouse	Intronic sORF	Brain, E14, Liver
38444	57	GTG ...	VDC ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Brain

ORFs

26 ORFs
4 known transcripts
44 ORF to known transcript associations

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF Length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Start codon

The start codon sequence of the ORF.

ORF annotations

A comma-separated list of all the annotations computed by our algorithm for the ORF. This list includes the annotations computed for the ORF for all transcripts. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of all the cell types in which the ORF has already been identified.

Transcripts

Display all the transcripts related to the entry.

708981

TTG...

LGT...

TTG

Alternative
InCDS
Overlapping
sORF
NMD
Intronic

3T3, R1E, B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
704591	ENSMUST00000024778	Med20-201	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse
36055	ENSMUST00000132397	Gm20517-202	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse
795891	ENSMUST00000138638	Med20-203	retained_intron	Ribo-seq	moderate	1	sORFs_org_Mouse

38494

222

CTG...

LSC...

CTG

Intronic
sORF
Alternative
InCDS
NMD
Overlapping

Spleen_B_cell, R1E, Testis,
v6-5, Liver

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
478378	ENSMUST00000149893	Med20-204	retained_intron	Ribo-seq	weak	1	sORFs_org_Mouse
36055	ENSMUST00000132397	Gm20517-202	nonsense_mediated_decay	Ribo-seq		3	sORFs_org_Mouse
379667	ENSMUST00000130830	Gm20517-201	retained_intron	Ribo-seq		1	sORFs_org_Mouse

38248

TTG...

LEA...

TTG

Alternative
NMD
Overlapping
sORF
Upstream
Intronic

MEF, Testis, v6-5,
B_cell, Spleen_B_cell, 3T3

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
36055	ENSMUST00000132397	Gm20517-202	nonsense_mediated_decay	Ribo-seq	strong	3	sORFs_org_Mouse
795891	ENSMUST00000138638	Med20-203	retained_intron	Ribo-seq	strong	1	sORFs_org_Mouse
478378	ENSMUST00000149893	Med20-204	retained_intron	Ribo-seq	strong	1	sORFs_org_Mouse
704591	ENSMUST00000024778	Med20-201	protein_coding	Ribo-seq	strong	1	sORFs_org_Mouse

480649

TTG...

LLT...

TTG

Intronic
sORF
Alternative
InCDS
Overlapping

Brain, Spleen_B_cell, 3T3

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
478378	ENSMUST00000149893	Med20-204	retained_intron	Ribo-seq	weak	2	sORFs_org_Mouse
704591	ENSMUST00000024778	Med20-201	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse

37194

CTG...

LEM...

CTG

Intronic
sORF
Alternative
InCDS
NMD
Overlapping

E14, MEF, R1E,
Testis, v6-5, Brain,
Liver, Spleen_B_cell, C2C12,
B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
1358140	ENSMUST00000146105	Gm20517-203	retained_intron	Ribo-seq		1	sORFs_org_Mouse
36055	ENSMUST00000132397	Gm20517-202	nonsense_mediated_decay	Ribo-seq		5	sORFs_org_Mouse
381225	ENSMUST00000133855	Med20-202	retained_intron	Ribo-seq	strong	2	sORFs_org_Mouse
478378	ENSMUST00000149893	Med20-204	retained_intron	Ribo-seq		1	sORFs_org_Mouse
379667	ENSMUST00000130830	Gm20517-201	retained_intron	Ribo-seq		2	sORFs_org_Mouse
795891	ENSMUST00000138638	Med20-203	retained_intron	Ribo-seq		1	sORFs_org_Mouse

36595

GTG...

VKV...

GTG

Alternative
InCDS
NMD
Overlapping
sORF
Intronic

R1E, Testis, Brain,
Liver, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
36055	ENSMUST00000132397	Gm20517-202	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse
379667	ENSMUST00000130830	Gm20517-201	retained_intron	Ribo-seq		2	sORFs_org_Mouse
478378	ENSMUST00000149893	Med20-204	retained_intron	Ribo-seq	weak	1	sORFs_org_Mouse

479468

TTG...

LPS...

TTG

Intronic
sORF
Alternative
InCDS
NMD
Overlapping

Brain, Spleen_B_cell, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
478378	ENSMUST00000149893	Med20-204	retained_intron	Ribo-seq	moderate	2	sORFs_org_Mouse
36055	ENSMUST00000132397	Gm20517-202	nonsense_mediated_decay	Ribo-seq	moderate	1	sORFs_org_Mouse

37124

117

GTG...

VEL...

GTG

Intronic
sORF
Alternative
InCDS
NMD
Overlapping

Spleen_B_cell, MEF, E14,
R1E, Testis, v6-5,
Brain, Liver, B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
478378	ENSMUST00000149893	Med20-204	retained_intron	Ribo-seq		1	sORFs_org_Mouse
379667	ENSMUST00000130830	Gm20517-201	retained_intron	Ribo-seq		1	sORFs_org_Mouse
36055	ENSMUST00000132397	Gm20517-202	nonsense_mediated_decay	Ribo-seq		6	sORFs_org_Mouse
381225	ENSMUST00000133855	Med20-202	retained_intron	Ribo-seq	strong	2	sORFs_org_Mouse
795891	ENSMUST00000138638	Med20-203	retained_intron	Ribo-seq		1	sORFs_org_Mouse

36090

198

GTG...

VVA...

GTG

Alternative
InCDS
NMD
Overlapping
sORF
Intronic

MEF, Neutrophil, R1E,
Testis, v6-5, B_cell,
Liver, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
36055	ENSMUST00000132397	Gm20517-202	nonsense_mediated_decay	Ribo-seq		5	sORFs_org_Mouse
795891	ENSMUST00000138638	Med20-203	retained_intron	Ribo-seq	moderate	1	sORFs_org_Mouse
379667	ENSMUST00000130830	Gm20517-201	retained_intron	Ribo-seq		2	sORFs_org_Mouse

479296

TTG...

LRP...

TTG

Alternative
InCDS
Overlapping
sORF
NMD
Intronic

3T3, R1E, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
704591	ENSMUST00000024778	Med20-201	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse
36055	ENSMUST00000132397	Gm20517-202	nonsense_mediated_decay	Ribo-seq	moderate	1	sORFs_org_Mouse
478378	ENSMUST00000149893	Med20-204	retained_intron	Ribo-seq	moderate	1	sORFs_org_Mouse

36535

162

GTG...

VSQ...

GTG

Intronic
sORF
Alternative
InCDS
NMD
Overlapping

MEF, Testis, v6-5,
E14, Brain, Liver,
B_cell, R1E, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
379667	ENSMUST00000130830	Gm20517-201	retained_intron	Ribo-seq		1	sORFs_org_Mouse
36055	ENSMUST00000132397	Gm20517-202	nonsense_mediated_decay	Ribo-seq		5	sORFs_org_Mouse
1358140	ENSMUST00000146105	Gm20517-203	retained_intron	Ribo-seq		1	sORFs_org_Mouse
381225	ENSMUST00000133855	Med20-202	retained_intron	Ribo-seq	weak	3	sORFs_org_Mouse
795891	ENSMUST00000138638	Med20-203	retained_intron	Ribo-seq		2	sORFs_org_Mouse
478378	ENSMUST00000149893	Med20-204	retained_intron	Ribo-seq		1	sORFs_org_Mouse

37644

162

GTG...

VLM...

GTG

Intronic
sORF
Alternative
InCDS
NMD
Overlapping

Spleen_B_cell, Brain, Liver,
R1E, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
478378	ENSMUST00000149893	Med20-204	retained_intron	Ribo-seq	moderate	1	sORFs_org_Mouse
379667	ENSMUST00000130830	Gm20517-201	retained_intron	Ribo-seq		2	sORFs_org_Mouse
36055	ENSMUST00000132397	Gm20517-202	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse

37289

147

GTG...

VAE...

GTG

Intronic
sORF
Alternative
InCDS
NMD
Overlapping

Brain, Liver, Spleen_B_cell,
E14, B_cell, R1E,
MEF, Testis, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
381225	ENSMUST00000133855	Med20-202	retained_intron	Ribo-seq	moderate	2	sORFs_org_Mouse
478378	ENSMUST00000149893	Med20-204	retained_intron	Ribo-seq		1	sORFs_org_Mouse
1358140	ENSMUST00000146105	Gm20517-203	retained_intron	Ribo-seq		1	sORFs_org_Mouse
795891	ENSMUST00000138638	Med20-203	retained_intron	Ribo-seq		2	sORFs_org_Mouse
36055	ENSMUST00000132397	Gm20517-202	nonsense_mediated_decay	Ribo-seq		4	sORFs_org_Mouse

480900

CTG...

LTP...

CTG

Alternative
InCDS
Overlapping
sORF
Intronic
NMD

3T3, Brain, Spleen_B_cell,
v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
704591	ENSMUST00000024778	Med20-201	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse
478378	ENSMUST00000149893	Med20-204	retained_intron	Ribo-seq	weak	2	sORFs_org_Mouse
36055	ENSMUST00000132397	Gm20517-202	nonsense_mediated_decay	Ribo-seq	weak	1	sORFs_org_Mouse

36940

255

CTG...

LMY...

CTG

Intronic
sORF
Alternative
InCDS
NMD
Overlapping

Brain, Liver, Spleen_B_cell,
R1E, Testis, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
379667	ENSMUST00000130830	Gm20517-201	retained_intron	Ribo-seq		2	sORFs_org_Mouse
478378	ENSMUST00000149893	Med20-204	retained_intron	Ribo-seq	moderate	1	sORFs_org_Mouse
36055	ENSMUST00000132397	Gm20517-202	nonsense_mediated_decay	Ribo-seq		3	sORFs_org_Mouse

479705

ATG...

MRS...

ATG

Alternative
InCDS
NMD
Overlapping
sORF
Intronic

MEF, R1E, 3T3,
Glioma, Liver, MESC,
Spleen_B_cell, B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
36055	ENSMUST00000132397	Gm20517-202	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse
704591	ENSMUST00000024778	Med20-201	protein_coding	Ribo-seq	moderate	2	sORFs_org_Mouse Johnstone2016
379667	ENSMUST00000130830	Gm20517-201	retained_intron	Ribo-seq		1	sORFs_org_Mouse
795891	ENSMUST00000138638	Med20-203	retained_intron	Ribo-seq	moderate	1	sORFs_org_Mouse

954601

CTG...

LES...

CTG

Alternative
NMD
Overlapping
sORF
Upstream
Intronic

MEF, v6-5, E14,
BMDC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
36055	ENSMUST00000132397	Gm20517-202	nonsense_mediated_decay	Ribo-seq		3	sORFs_org_Mouse
381225	ENSMUST00000133855	Med20-202	retained_intron	Ribo-seq		2	sORFs_org_Mouse
379667	ENSMUST00000130830	Gm20517-201	retained_intron	Ribo-seq		1	sORFs_org_Mouse

480657

ATG...

MAL...

ATG

Alternative
InCDS
Overlapping
sORF
NMD
Intronic

3T3, Glioma, Liver,
MEF, MESC, v6-5,
Brain, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
704591	ENSMUST00000024778	Med20-201	protein_coding	Ribo-seq	strong	2	sORFs_org_Mouse Johnstone2016
36055	ENSMUST00000132397	Gm20517-202	nonsense_mediated_decay	Ribo-seq	strong	2	sORFs_org_Mouse Johnstone2016
478378	ENSMUST00000149893	Med20-204	retained_intron	Ribo-seq	strong	2	sORFs_org_Mouse

37116

216

GTG...

VEY...

GTG

Intronic
sORF
Alternative
InCDS
NMD
Overlapping

Brain, Liver, Spleen_B_cell,
MEF, Neutrophil, R1E,
Testis, v6-5, B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
379667	ENSMUST00000130830	Gm20517-201	retained_intron	Ribo-seq		3	sORFs_org_Mouse
36055	ENSMUST00000132397	Gm20517-202	nonsense_mediated_decay	Ribo-seq		5	sORFs_org_Mouse
795891	ENSMUST00000138638	Med20-203	retained_intron	Ribo-seq	moderate	1	sORFs_org_Mouse

37715

246

GTG...

VMH...

GTG

Intronic
sORF
Alternative
InCDS
NMD
Overlapping

Brain, Liver, Spleen_B_cell,
R1E, Testis, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
379667	ENSMUST00000130830	Gm20517-201	retained_intron	Ribo-seq		2	sORFs_org_Mouse
478378	ENSMUST00000149893	Med20-204	retained_intron	Ribo-seq	weak	1	sORFs_org_Mouse
36055	ENSMUST00000132397	Gm20517-202	nonsense_mediated_decay	Ribo-seq		3	sORFs_org_Mouse

1152662

CTG...

LSS...

CTG

Intronic
sORF
Alternative
NMD
Overlapping
Upstream

E14, MEF, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
381225	ENSMUST00000133855	Med20-202	retained_intron	Ribo-seq		1	sORFs_org_Mouse
36055	ENSMUST00000132397	Gm20517-202	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse

795890

198

GTG...

VCP...

GTG

Alternative
InCDS
NMD
Overlapping
sORF
Intronic

MEF, B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
36055	ENSMUST00000132397	Gm20517-202	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse
795891	ENSMUST00000138638	Med20-203	retained_intron	Ribo-seq		1	sORFs_org_Mouse

36107

153

GTG...

VKL...

GTG

Alternative
InCDS
NMD
Overlapping
sORF
Intronic

R1E, Testis, Brain,
Liver, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
36055	ENSMUST00000132397	Gm20517-202	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse
379667	ENSMUST00000130830	Gm20517-201	retained_intron	Ribo-seq		2	sORFs_org_Mouse
478378	ENSMUST00000149893	Med20-204	retained_intron	Ribo-seq	moderate	1	sORFs_org_Mouse

482800

GTG...

VPR...

GTG

Intronic
sORF
Alternative
InCDS
Overlapping
NMD

Spleen_B_cell, 3T3, R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
478378	ENSMUST00000149893	Med20-204	retained_intron	Ribo-seq	moderate	1	sORFs_org_Mouse
704591	ENSMUST00000024778	Med20-201	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse
36055	ENSMUST00000132397	Gm20517-202	nonsense_mediated_decay	Ribo-seq	moderate	1	sORFs_org_Mouse

38444

GTG...

VDC...

GTG

Intronic
sORF
Alternative
InCDS
NMD
Overlapping

Brain, E14, R1E,
Testis, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
381225	ENSMUST00000133855	Med20-202	retained_intron	Ribo-seq	moderate	1	sORFs_org_Mouse
36055	ENSMUST00000132397	Gm20517-202	nonsense_mediated_decay	Ribo-seq		3	sORFs_org_Mouse
478378	ENSMUST00000149893	Med20-204	retained_intron	Ribo-seq		1	sORFs_org_Mouse

482687

TTG...

LRM...

TTG

Intronic
sORF

Brain, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
478378	ENSMUST00000149893	Med20-204	retained_intron	Ribo-seq	weak	2	sORFs_org_Mouse

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