Gene NCBI:56433 | MetamORF

Gene

ID CARD

NCBI:56433

Aliases

2010015D08Rik
AW049835, ENSMUSG00000029462, MGI:1928344
NCBI:56433, OFF:Vps29, PEP11
Vps29

Chromosome

Transcripts

38 ORFs
9 known transcripts
84 ORF to known transcript associations

MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

ORFs

Display all the transcripts related to the entry.

179798

ENSMUST00000118765

Vps29-203

protein_coding

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
64816	99	GTG ...	VLM ...	Ribo-seq	GTG	weak	4	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	Brain, E14, v6-5
1238191	111	AGG ...	RKN ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
902919	156	ATC ...	ICT ...	Ribo-seq	ATC	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
1236310	51	AGG ...	RRA ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
977444	42	ACG ...	TTI ...	Ribo-seq	ACG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
904239	36	ATC ...	ISR ...	Ribo-seq	ATC	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
903268	51	AGG ...	RRS ...	Ribo-seq	AGG	moderate	2	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, E14
61614	96	CTG ...	LMD ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	Brain, E14, MEF, v6-5
1238523	36	AGG ...	RLL ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
65367	72	GTG ...	VVT ...	Ribo-seq	GTG	strong	4	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	BMDC, Brain, E14, v6-5
572507	42	TTG ...	LNG ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	BMDC, MEF, v6-5

520298

ENSMUST00000118830

Vps29-204

protein_coding

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
62901	30	TTG ...	LNG ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	Spleen_B_cell
169896	75	CTG ...	LHQ ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	Spleen_B_cell
1666206	60	CTG ...	LSA ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
1665605	96	TTG ...	LVM ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
524624	54	TTG ...	LNG ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	Spleen_B_cell
1665642	90	ATG ...	MFH ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
1679	90	CTG ...	LHR ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	Spleen_B_cell

167179

ENSMUST00000199086

Vps29-209

retained_intron

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
169896	75	CTG ...	LHQ ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	Brain
63106	186	CTG ...	LVP ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Intronic sORF	Brain, Liver
61358	210	CTG ...	LPA ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Intronic sORF	Brain, Liver
977444	42	ACG ...	TTI ...	Ribo-seq	ACG	moderate	1	sORFs_org_Mouse	Intronic sORF	MEF
62286	252	TTG ...	LVL ...	Ribo-seq	TTG	strong	2	sORFs_org_Mouse	Intronic sORF	Brain, Liver
65860	258	TTG ...	LVL ...	Ribo-seq	TTG	strong	2	sORFs_org_Mouse	Intronic sORF	Brain, Liver
66227	255	GTG ...	VLV ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	Intronic sORF	Brain, Liver
179637	72	CTG ...	LKV ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Intronic sORF	Brain, Liver
62856	237	CTG ...	LHI ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Intronic sORF	Brain, Liver
64393	183	GTG ...	VPG ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	Intronic sORF	Brain, Liver
1679	90	CTG ...	LHR ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	Brain

61615

ENSMUST00000111729

Vps29-201

nonsense_mediated_decay

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
62286	252	TTG ...	LVL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative Downstream NMD Overlapping sORF	Brain
64524	114	GTG ...	VDI ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative Downstream NMD sORF	BMDC, Brain, Testis
66227	255	GTG ...	VLV ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative Downstream NMD Overlapping sORF	Brain
63740	237	CTG ...	LNY ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative Downstream NMD sORF	BMDC, Brain, MEF, Testis
985877	129	GTG ...	VCF ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	MEF
65367	72	GTG ...	VVT ...	Ribo-seq	GTG	strong	6	sORFs_org_Mouse	Alternative Downstream NMD sORF	BMDC, Brain, MEF, Neutrophil, NSC, Testis
64393	183	GTG ...	VPG ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative Downstream NMD Overlapping sORF	Brain
64816	99	GTG ...	VLM ...	Ribo-seq	GTG	weak	7	sORFs_org_Mouse	Alternative Downstream NMD sORF	BMDC, Brain, MEF, Neutrophil, NSC, Testis
62361	135	CTG ...	LLQ ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative Downstream NMD sORF	Brain, Testis
179637	72	CTG ...	LKV ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	MEF
61865	132	CTG ...	LQR ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative Downstream NMD sORF	BMDC, Brain, Testis
1735413	30	CTG ...	LTP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	MEF
63106	186	CTG ...	LVP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative Downstream NMD Overlapping sORF	Brain
62901	30	TTG ...	LNG ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Alternative NMD Overlapping sORF Upstream	BMDC, MEF, Testis
61805	213	GTG ...	VTV ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative Downstream NMD sORF	BMDC, Brain, Testis
61789	186	CTG ...	LIH ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative Downstream NMD sORF	BMDC, Brain, Testis
1020038	108	CTG ...	LAG ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative Downstream NMD Overlapping sORF	Brain
1679	90	CTG ...	LHR ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Downstream NMD Overlapping sORF	MEF
61358	210	CTG ...	LPA ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative Downstream NMD Overlapping sORF	BMDC, Brain
66203	207	GTG ...	VGQ ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative Downstream NMD sORF	Brain, Testis
61614	96	CTG ...	LMD ...	Ribo-seq	CTG	moderate	6	sORFs_org_Mouse	Alternative Downstream NMD sORF	BMDC, Brain, MEF, Neutrophil, NSC, Testis
62856	237	CTG ...	LHI ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative Downstream NMD Overlapping sORF	BMDC, Brain
65860	258	TTG ...	LVL ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative Downstream NMD Overlapping sORF	BMDC, Brain
169896	75	CTG ...	LHQ ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Downstream NMD Overlapping sORF	MEF

61359

ENSMUST00000154686

Vps29-207

nonsense_mediated_decay

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
62286	252	TTG ...	LVL ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative Downstream NMD Overlapping sORF	MEF, Testis
985877	129	GTG ...	VCF ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	MEF
1679	90	CTG ...	LHR ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Downstream NMD sORF	MEF
66227	255	GTG ...	VLV ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative Downstream NMD Overlapping sORF	MEF, Testis
64393	183	GTG ...	VPG ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative Downstream NMD sORF	MEF, Testis
62856	237	CTG ...	LHI ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative Downstream NMD Overlapping sORF	Testis
63106	186	CTG ...	LVP ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative Downstream NMD sORF	MEF, Testis
65860	258	TTG ...	LVL ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative Downstream NMD Overlapping sORF	MEF, Testis
61358	210	CTG ...	LPA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative Downstream NMD Overlapping sORF	Testis

829295

ENSMUST00000132785

Vps29-205

processed_transcript

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
64393	183	GTG ...	VPG ...	Ribo-seq	GTG		6	sORFs_org_Mouse	ncRNA sORF	B_cell, E14, MEF, Neutrophil, NSC
985877	129	GTG ...	VCF ...	Ribo-seq	GTG		5	sORFs_org_Mouse	ncRNA sORF	E14, Liver, MEF, NSC, v6-5
62856	237	CTG ...	LHI ...	Ribo-seq	CTG		5	sORFs_org_Mouse	ncRNA sORF	B_cell, E14, MEF, Neutrophil, NSC
62901	30	TTG ...	LNG ...	Ribo-seq	TTG		6	sORFs_org_Mouse	ncRNA sORF	B_cell, MEF, Neutrophil, NSC, v6-5
169896	75	CTG ...	LHQ ...	Ribo-seq	CTG	weak	5	sORFs_org_Mouse	ncRNA sORF	B_cell, E14, Liver, MEF, v6-5
1679	90	CTG ...	LHR ...	Ribo-seq	CTG	weak	5	sORFs_org_Mouse	ncRNA sORF	B_cell, E14, Liver, MEF, v6-5
61358	210	CTG ...	LPA ...	Ribo-seq	CTG		5	sORFs_org_Mouse	ncRNA sORF	B_cell, E14, MEF, Neutrophil, NSC
65860	258	TTG ...	LVL ...	Ribo-seq	TTG		6	sORFs_org_Mouse	ncRNA sORF	B_cell, E14, MEF, Neutrophil, NSC
66227	255	GTG ...	VLV ...	Ribo-seq	GTG		7	sORFs_org_Mouse	ncRNA sORF	B_cell, E14, MEF, Neutrophil, NSC, v6-5
63106	186	CTG ...	LVP ...	Ribo-seq	CTG		6	sORFs_org_Mouse	ncRNA sORF	B_cell, E14, MEF, Neutrophil, NSC
62286	252	TTG ...	LVL ...	Ribo-seq	TTG		6	sORFs_org_Mouse	ncRNA sORF	B_cell, E14, MEF, Neutrophil, NSC

1680

ENSMUST00000155671

Vps29-208

protein_coding

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
169604	138	ATG ...	MWT ...	Ribo-seq	ATG		1	sORFs_org_Mouse	InCDS Overlapping sORF	3T3
178168	141	TTG ...	LMW ...	Ribo-seq	TTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	3T3
572507	42	TTG ...	LNG ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3
1679	90	CTG ...	LHR ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	Skin_tumor

169605

ENSMUST00000117868

Vps29-202

protein_coding

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
169604	138	ATG ...	MWT ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Downstream Overlapping sORF	Brain
572507	42	TTG ...	LNG ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	B_cell, Neutrophil
1679	90	CTG ...	LHR ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	R1E
62901	30	TTG ...	LNG ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	Brain, R1E
169896	75	CTG ...	LHQ ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	R1E
178168	141	TTG ...	LMW ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Downstream Overlapping sORF	Brain

1661181

ENSMUST00000145821

Vps29-206

protein_coding

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
169896	75	CTG ...	LHQ ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	sORF	MEF

ORFs

38 ORFs
9 known transcripts
84 ORF to known transcript associations

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF Length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Start codon

The start codon sequence of the ORF.

ORF annotations

A comma-separated list of all the annotations computed by our algorithm for the ORF. This list includes the annotations computed for the ORF for all transcripts. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of all the cell types in which the ORF has already been identified.

Transcripts

Display all the transcripts related to the entry.

64816

GTG...

VLM...

GTG

Alternative
Downstream
Overlapping
sORF
NMD

Brain, E14, v6-5,
BMDC, MEF, Neutrophil,
NSC, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
179798	ENSMUST00000118765	Vps29-203	protein_coding	Ribo-seq	weak	4	sORFs_org_Mouse
61615	ENSMUST00000111729	Vps29-201	nonsense_mediated_decay	Ribo-seq	weak	7	sORFs_org_Mouse

62901

TTG...

LNG...

TTG

Alternative
Overlapping
sORF
Upstream
ncRNA
NMD

Spleen_B_cell, B_cell, MEF,
Neutrophil, NSC, v6-5,
Brain, R1E, BMDC,
Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
520298	ENSMUST00000118830	Vps29-204	protein_coding	Ribo-seq		1	sORFs_org_Mouse
829295	ENSMUST00000132785	Vps29-205	processed_transcript	Ribo-seq		6	sORFs_org_Mouse
169605	ENSMUST00000117868	Vps29-202	protein_coding	Ribo-seq		2	sORFs_org_Mouse
61615	ENSMUST00000111729	Vps29-201	nonsense_mediated_decay	Ribo-seq		4	sORFs_org_Mouse

169896

CTG...

LHQ...

CTG

Intronic
sORF
InCDS
Overlapping
ncRNA
Downstream
NMD

Brain, MEF, Spleen_B_cell,
B_cell, E14, Liver,
v6-5, R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
167179	ENSMUST00000199086	Vps29-209	retained_intron	Ribo-seq	weak	1	sORFs_org_Mouse
1661181	ENSMUST00000145821	Vps29-206	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse
520298	ENSMUST00000118830	Vps29-204	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse
829295	ENSMUST00000132785	Vps29-205	processed_transcript	Ribo-seq	weak	5	sORFs_org_Mouse
169605	ENSMUST00000117868	Vps29-202	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse
61615	ENSMUST00000111729	Vps29-201	nonsense_mediated_decay	Ribo-seq	weak	1	sORFs_org_Mouse

1238191

111

AGG...

RKN...

AGG

InCDS
Overlapping
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
179798	ENSMUST00000118765	Vps29-203	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse

62286

252

TTG...

LVL...

TTG

Alternative
Downstream
NMD
Overlapping
sORF
Intronic
ncRNA

Brain, MEF, Testis,
Liver, B_cell, E14,
Neutrophil, NSC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
61615	ENSMUST00000111729	Vps29-201	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse
61359	ENSMUST00000154686	Vps29-207	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse
167179	ENSMUST00000199086	Vps29-209	retained_intron	Ribo-seq	strong	2	sORFs_org_Mouse
829295	ENSMUST00000132785	Vps29-205	processed_transcript	Ribo-seq		6	sORFs_org_Mouse

63106

186

CTG...

LVP...

CTG

Intronic
sORF
Alternative
Downstream
NMD
Overlapping
ncRNA

Brain, Liver, MEF,
Testis, B_cell, E14,
Neutrophil, NSC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
167179	ENSMUST00000199086	Vps29-209	retained_intron	Ribo-seq	moderate	2	sORFs_org_Mouse
61615	ENSMUST00000111729	Vps29-201	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse
61359	ENSMUST00000154686	Vps29-207	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse
829295	ENSMUST00000132785	Vps29-205	processed_transcript	Ribo-seq		6	sORFs_org_Mouse

64524

114

GTG...

VDI...

GTG

Alternative
Downstream
NMD
sORF

BMDC, Brain, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
61615	ENSMUST00000111729	Vps29-201	nonsense_mediated_decay	Ribo-seq		3	sORFs_org_Mouse

61358

210

CTG...

LPA...

CTG

Intronic
sORF
Alternative
Downstream
NMD
Overlapping
ncRNA

Brain, Liver, BMDC,
B_cell, E14, MEF,
Neutrophil, NSC, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
167179	ENSMUST00000199086	Vps29-209	retained_intron	Ribo-seq	moderate	2	sORFs_org_Mouse
61615	ENSMUST00000111729	Vps29-201	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse
829295	ENSMUST00000132785	Vps29-205	processed_transcript	Ribo-seq		5	sORFs_org_Mouse
61359	ENSMUST00000154686	Vps29-207	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

64393

183

GTG...

VPG...

GTG

ncRNA
sORF
Alternative
Downstream
NMD
Overlapping
Intronic

B_cell, E14, MEF,
Neutrophil, NSC, Brain,
Liver, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
829295	ENSMUST00000132785	Vps29-205	processed_transcript	Ribo-seq		6	sORFs_org_Mouse
61615	ENSMUST00000111729	Vps29-201	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse
167179	ENSMUST00000199086	Vps29-209	retained_intron	Ribo-seq	weak	2	sORFs_org_Mouse
61359	ENSMUST00000154686	Vps29-207	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse

985877

129

GTG...

VCF...

GTG

Alternative
Downstream
NMD
sORF
ncRNA

MEF, E14, Liver,
NSC, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
61359	ENSMUST00000154686	Vps29-207	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse
61615	ENSMUST00000111729	Vps29-201	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse
829295	ENSMUST00000132785	Vps29-205	processed_transcript	Ribo-seq		5	sORFs_org_Mouse

169604

138

ATG...

MWT...

ATG

InCDS
Overlapping
sORF
Downstream

3T3, Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
1680	ENSMUST00000155671	Vps29-208	protein_coding	Ribo-seq		1	sORFs_org_Mouse
169605	ENSMUST00000117868	Vps29-202	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse

977444

ACG...

TTI...

ACG

Intronic
sORF
Alternative
InCDS
Overlapping

MEF, E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
167179	ENSMUST00000199086	Vps29-209	retained_intron	Ribo-seq	moderate	1	sORFs_org_Mouse
179798	ENSMUST00000118765	Vps29-203	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse

66227

255

GTG...

VLV...

GTG

Alternative
Downstream
NMD
Overlapping
sORF
Intronic
ncRNA

Brain, Liver, MEF,
Testis, B_cell, E14,
Neutrophil, NSC, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
61615	ENSMUST00000111729	Vps29-201	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse
167179	ENSMUST00000199086	Vps29-209	retained_intron	Ribo-seq	weak	2	sORFs_org_Mouse
61359	ENSMUST00000154686	Vps29-207	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse
829295	ENSMUST00000132785	Vps29-205	processed_transcript	Ribo-seq		7	sORFs_org_Mouse

902919

156

ATC...

ICT...

ATC

Alternative
InCDS
Overlapping
sORF

BMDC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
179798	ENSMUST00000118765	Vps29-203	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse

65860

258

TTG...

LVL...

TTG

Intronic
sORF
ncRNA
Alternative
Downstream
NMD
Overlapping

Brain, Liver, B_cell,
E14, MEF, Neutrophil,
NSC, Testis, BMDC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
167179	ENSMUST00000199086	Vps29-209	retained_intron	Ribo-seq	strong	2	sORFs_org_Mouse
829295	ENSMUST00000132785	Vps29-205	processed_transcript	Ribo-seq		6	sORFs_org_Mouse
61359	ENSMUST00000154686	Vps29-207	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse
61615	ENSMUST00000111729	Vps29-201	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse

1236310

AGG...

RRA...

AGG

Alternative
InCDS
Overlapping
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
179798	ENSMUST00000118765	Vps29-203	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse

63740

237

CTG...

LNY...

CTG

Alternative
Downstream
NMD
sORF

BMDC, Brain, MEF,
Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
61615	ENSMUST00000111729	Vps29-201	nonsense_mediated_decay	Ribo-seq		4	sORFs_org_Mouse

65367

GTG...

VVT...

GTG

Alternative
Downstream
NMD
sORF
Overlapping

BMDC, Brain, MEF,
Neutrophil, NSC, Testis,
E14, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
61615	ENSMUST00000111729	Vps29-201	nonsense_mediated_decay	Ribo-seq	strong	6	sORFs_org_Mouse
179798	ENSMUST00000118765	Vps29-203	protein_coding	Ribo-seq	strong	4	sORFs_org_Mouse

904239

ATC...

ISR...

ATC

Alternative
InCDS
Overlapping
sORF

BMDC, E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
179798	ENSMUST00000118765	Vps29-203	protein_coding	Ribo-seq	moderate	2	sORFs_org_Mouse

572507

TTG...

LNG...

TTG

Alternative
Overlapping
sORF
Upstream

B_cell, Neutrophil, 3T3,
BMDC, MEF, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
169605	ENSMUST00000117868	Vps29-202	protein_coding	Ribo-seq		2	sORFs_org_Mouse
1680	ENSMUST00000155671	Vps29-208	protein_coding	Ribo-seq		1	sORFs_org_Mouse
179798	ENSMUST00000118765	Vps29-203	protein_coding	Ribo-seq		3	sORFs_org_Mouse

62856

237

CTG...

LHI...

CTG

ncRNA
sORF
Intronic
Alternative
Downstream
NMD
Overlapping

B_cell, E14, MEF,
Neutrophil, NSC, Brain,
Liver, Testis, BMDC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
829295	ENSMUST00000132785	Vps29-205	processed_transcript	Ribo-seq		5	sORFs_org_Mouse
167179	ENSMUST00000199086	Vps29-209	retained_intron	Ribo-seq	moderate	2	sORFs_org_Mouse
61359	ENSMUST00000154686	Vps29-207	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse
61615	ENSMUST00000111729	Vps29-201	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse

1666206

CTG...

LSA...

CTG

Alternative
InCDS
Overlapping
sORF

MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
520298	ENSMUST00000118830	Vps29-204	protein_coding	Ribo-seq		3	sORFs_org_Mouse

1665605

TTG...

LVM...

TTG

Alternative
InCDS
Overlapping
sORF

MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
520298	ENSMUST00000118830	Vps29-204	protein_coding	Ribo-seq		1	sORFs_org_Mouse

903268

AGG...

RRS...

AGG

InCDS
Overlapping
sORF

BMDC, E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
179798	ENSMUST00000118765	Vps29-203	protein_coding	Ribo-seq	moderate	2	sORFs_org_Mouse

1679

CTG...

LHR...

CTG

Downstream
NMD
sORF
InCDS
Overlapping
Intronic
ncRNA

MEF, R1E, Brain,
B_cell, E14, Liver,
v6-5, Spleen_B_cell, Skin_tumor

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
61359	ENSMUST00000154686	Vps29-207	nonsense_mediated_decay	Ribo-seq	weak	1	sORFs_org_Mouse
169605	ENSMUST00000117868	Vps29-202	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse
167179	ENSMUST00000199086	Vps29-209	retained_intron	Ribo-seq	weak	1	sORFs_org_Mouse
829295	ENSMUST00000132785	Vps29-205	processed_transcript	Ribo-seq	weak	5	sORFs_org_Mouse
61615	ENSMUST00000111729	Vps29-201	nonsense_mediated_decay	Ribo-seq	weak	1	sORFs_org_Mouse
520298	ENSMUST00000118830	Vps29-204	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse
1680	ENSMUST00000155671	Vps29-208	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse

61614

CTG...

LMD...

CTG

Alternative
Downstream
Overlapping
sORF
NMD

Brain, E14, MEF,
v6-5, BMDC, Neutrophil,
NSC, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
179798	ENSMUST00000118765	Vps29-203	protein_coding	Ribo-seq	moderate	4	sORFs_org_Mouse
61615	ENSMUST00000111729	Vps29-201	nonsense_mediated_decay	Ribo-seq	moderate	6	sORFs_org_Mouse

179637

CTG...

LKV...

CTG

Intronic
sORF
InCDS
NMD
Overlapping

Brain, Liver, MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
167179	ENSMUST00000199086	Vps29-209	retained_intron	Ribo-seq	weak	2	sORFs_org_Mouse
61615	ENSMUST00000111729	Vps29-201	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

62361

135

CTG...

LLQ...

CTG

Alternative
Downstream
NMD
sORF

Brain, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
61615	ENSMUST00000111729	Vps29-201	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse

61865

132

CTG...

LQR...

CTG

Alternative
Downstream
NMD
sORF

BMDC, Brain, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
61615	ENSMUST00000111729	Vps29-201	nonsense_mediated_decay	Ribo-seq		3	sORFs_org_Mouse

1735413

CTG...

LTP...

CTG

Alternative
InCDS
NMD
Overlapping
sORF

MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
61615	ENSMUST00000111729	Vps29-201	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

524624

TTG...

LNG...

TTG

Alternative
Overlapping
sORF
Upstream

Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
520298	ENSMUST00000118830	Vps29-204	protein_coding	Ribo-seq		1	sORFs_org_Mouse

178168

141

TTG...

LMW...

TTG

InCDS
Overlapping
sORF
Downstream

3T3, Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
1680	ENSMUST00000155671	Vps29-208	protein_coding	Ribo-seq		1	sORFs_org_Mouse
169605	ENSMUST00000117868	Vps29-202	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse

1665642

ATG...

MFH...

ATG

Alternative
InCDS
Overlapping
sORF

MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
520298	ENSMUST00000118830	Vps29-204	protein_coding	Ribo-seq		1	sORFs_org_Mouse

61805

213

GTG...

VTV...

GTG

Alternative
Downstream
NMD
sORF

BMDC, Brain, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
61615	ENSMUST00000111729	Vps29-201	nonsense_mediated_decay	Ribo-seq		3	sORFs_org_Mouse

1238523

AGG...

RLL...

AGG

Alternative
InCDS
Overlapping
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
179798	ENSMUST00000118765	Vps29-203	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse

61789

186

CTG...

LIH...

CTG

Alternative
Downstream
NMD
sORF

BMDC, Brain, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
61615	ENSMUST00000111729	Vps29-201	nonsense_mediated_decay	Ribo-seq		3	sORFs_org_Mouse

1020038

108

CTG...

LAG...

CTG

Alternative
Downstream
NMD
Overlapping
sORF

Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
61615	ENSMUST00000111729	Vps29-201	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

66203

207

GTG...

VGQ...

GTG

Alternative
Downstream
NMD
sORF

Brain, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
61615	ENSMUST00000111729	Vps29-201	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse

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