Metam
ORF

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Gene

Gene

ID CARD

ID

NCBI:53379

Aliases

9130414A06Rik
ENSMUSG00000004980, hnrnp-A, Hnrnpa2b1
Hnrpa2, Hnrpa2b1, MGI:104819
NCBI:53379, OFF:Hnrnpa2b1

Chromosome

6

Transcripts

142 ORFs
11 known transcripts
287 ORF to known transcript associations

MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

ORFs

Display all the transcripts related to the entry.

415139 ENSMUST00000205204 Hnrnpa2b1-213 retained_intron
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

1247415 150

ATA ...

ING ...

Ribo-seq
ATA

moderate

1 sORFs_org_Mouse
    Intronic
    sORF
E14
2964 45

CTG ...

LRE ...

Ribo-seq
CTG

weak

5 sORFs_org_Mouse
    Intronic
    sORF
B_cell, Brain, E14,
Liver, MEF
837905 69

ATG ...

MVF ...

Ribo-seq
ATG

strong

5 sORFs_org_Mouse
    Intronic
    sORF
B_cell, Brain, Liver,
MEF, Neutrophil
1244442 81

AGG ...

RPH ...

Ribo-seq
AGG

1 sORFs_org_Mouse
    Intronic
    sORF
E14
1248441 222

ATG ...

MQK ...

Ribo-seq
ATG

moderate

2 sORFs_org_Mouse
    Intronic
    sORF
E14, MEF
1248379 93

GTG ...

VVA ...

Ribo-seq
GTG

moderate

1 sORFs_org_Mouse
    Intronic
    sORF
E14
1248200 99

ATT ...

ILV ...

Ribo-seq
ATT

moderate

1 sORFs_org_Mouse
    Intronic
    sORF
E14
70747 90

CTG ...

LLS ...

Ribo-seq
CTG

weak

10 sORFs_org_Mouse
    Intronic
    sORF
B_cell, Brain, E14,
Liver, MEF, Neutrophil,
NSC, v6-5
415494 93

ATA ...

IGS ...

Ribo-seq
ATA

2 sORFs_org_Mouse
    Intronic
    sORF
C2C12, E14
69816 33

CTG ...

LQG ...

Ribo-seq
CTG

weak

4 sORFs_org_Mouse
    Intronic
    sORF
B_cell, Brain, Liver,
MEF
68778 111

TTG ...

LVL ...

Ribo-seq
TTG

strong

2 sORFs_org_Mouse
    Intronic
    sORF
E14, MEF
1244889 207

AGG ...

RHC ...

Ribo-seq
AGG

moderate

1 sORFs_org_Mouse
    Intronic
    sORF
E14
1243297 51

AAG ...

KIK ...

Ribo-seq
AAG

weak

1 sORFs_org_Mouse
    Intronic
    sORF
E14
1687794 243

GTG ...

VTV ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    Intronic
    sORF
MEF
1248064 162

GTG ...

VEE ...

Ribo-seq
GTG

strong

1 sORFs_org_Mouse
    Intronic
    sORF
E14
68488 156

GTG ...

VQE ...

Ribo-seq
GTG

weak

10 sORFs_org_Mouse
    Intronic
    sORF
B_cell, Brain, E14,
Liver, MEF, Neutrophil,
NSC, v6-5
1687787 114

GTG ...

VIV ...

Ribo-seq
GTG

weak

1 sORFs_org_Mouse
    Intronic
    sORF
MEF
875766 84

TTG ...

LVE ...

Ribo-seq
TTG

moderate

1 sORFs_org_Mouse
    Intronic
    sORF
MEF
1245024 42

ATT ...

ITL ...

Ribo-seq
ATT

moderate

1 sORFs_org_Mouse
    Intronic
    sORF
E14
1246225 60

AGG ...

RVV ...

Ribo-seq
AGG

1 sORFs_org_Mouse
    Intronic
    sORF
E14
875257 81

GTG ...

VEL ...

Ribo-seq
GTG

moderate

2 sORFs_org_Mouse
    Intronic
    sORF
E14, MEF
1687681 36

TTG ...

LKS ...

Ribo-seq
TTG

moderate

1 sORFs_org_Mouse
    Intronic
    sORF
MEF
70341 48

TTG ...

LTL ...

Ribo-seq
TTG

moderate

4 sORFs_org_Mouse
    Intronic
    sORF
B_cell, Brain, Liver,
MEF
1688047 75

TTG ...

LDQ ...

Ribo-seq
TTG

strong

1 sORFs_org_Mouse
    Intronic
    sORF
MEF
415138 231

ATG ...

MVT ...

Ribo-seq
ATG

moderate

2 sORFs_org_Mouse
    Intronic
    sORF
C2C12, MEF
194519 132

GTG ...

VCR ...

Ribo-seq
GTG

weak

9 sORFs_org_Mouse
    Intronic
    sORF
B_cell, Brain, E14,
Liver, MEF, Neutrophil,
NSC, v6-5
1687606 237

GTG ...

VKK ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    Intronic
    sORF
MEF
1687708 99

TTG ...

LLL ...

Ribo-seq
TTG

weak

1 sORFs_org_Mouse
    Intronic
    sORF
MEF
1247976 57

AAG ...

KQK ...

Ribo-seq
AAG

weak

1 sORFs_org_Mouse
    Intronic
    sORF
E14
1247112 105

TTG ...

LGI ...

Ribo-seq
TTG

strong

1 sORFs_org_Mouse
    Intronic
    sORF
E14
1246645 63

CTG ...

LRN ...

Ribo-seq
CTG

moderate

2 sORFs_org_Mouse
    Intronic
    sORF
E14, MEF
415478 39

ATC ...

ILQ ...

Ribo-seq
ATC

moderate

2 sORFs_org_Mouse
    Intronic
    sORF
C2C12, E14
1247474 210

AAG ...

KED ...

Ribo-seq
AAG

1 sORFs_org_Mouse
    Intronic
    sORF
E14
415292 150

AAG ...

KEQ ...

Ribo-seq
AAG

2 sORFs_org_Mouse
    Intronic
    sORF
C2C12, E14
415544 126

ATT ...

IGG ...

Ribo-seq
ATT

1 sORFs_org_Mouse
    Intronic
    sORF
C2C12
1687602 51

TTG ...

LMT ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    Intronic
    sORF
MEF
415354 135

AAG ...

KLF ...

Ribo-seq
AAG

2 sORFs_org_Mouse
    Intronic
    sORF
C2C12, E14
68798 36

CTG ...

LQA ...

Ribo-seq
CTG

moderate

4 sORFs_org_Mouse
    Intronic
    sORF
B_cell, Brain, Liver,
MEF
1247772 141

ATA ...

IIT ...

Ribo-seq
ATA

1 sORFs_org_Mouse
    Intronic
    sORF
E14
415430 84

CTG ...

LER ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    Intronic
    sORF
C2C12, E14
1248300 69

AAG ...

KIL ...

Ribo-seq
AAG

moderate

1 sORFs_org_Mouse
    Intronic
    sORF
E14
70300 42

CTG ...

LPW ...

Ribo-seq
CTG

moderate

4 sORFs_org_Mouse
    Intronic
    sORF
B_cell, Brain, Liver,
MEF
1688011 96

CTG ...

LLI ...

Ribo-seq
CTG

weak

1 sORFs_org_Mouse
    Intronic
    sORF
MEF
1245068 90

TTG ...

LRN ...

Ribo-seq
TTG

3 sORFs_org_Mouse
    Intronic
    sORF
Brain, E14, MEF
1245800 30

AGG ...

RGG ...

Ribo-seq
AGG

moderate

1 sORFs_org_Mouse
    Intronic
    sORF
E14
415557 36

ATC ...

IGL ...

Ribo-seq
ATC

strong

2 sORFs_org_Mouse
    Intronic
    sORF
C2C12, E14
906806 36

ATA ...

ISH ...

Ribo-seq
ATA

moderate

2 sORFs_org_Mouse
    Intronic
    sORF
E14, Liver
873954 87

TTG ...

LLV ...

Ribo-seq
TTG

weak

1 sORFs_org_Mouse
    Intronic
    sORF
MEF
415567 45

ATG ...

MSN ...

Ribo-seq
ATG

6 sORFs_org_Mouse
    Intronic
    sORF
B_cell, Brain, C2C12,
E14, Liver, MEF
910087 30

ATC ...

ISL ...

Ribo-seq
ATC

weak

1 sORFs_org_Mouse
    Intronic
    sORF
E14
1687392 48

ATG ...

MTM ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    Intronic
    sORF
MEF
1687803 105

TTG ...

LFL ...

Ribo-seq
TTG

moderate

1 sORFs_org_Mouse
    Intronic
    sORF
MEF
3190 30

CTG ...

LKR ...

Ribo-seq
CTG

moderate

5 sORFs_org_Mouse
    Intronic
    sORF
B_cell, Brain, E14,
Liver, MEF
1687408 84

GTG ...

VAI ...

Ribo-seq
GTG

strong

1 sORFs_org_Mouse
    Intronic
    sORF
MEF
1246248 228

CTG ...

LFV ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    Intronic
    sORF
E14, MEF
194520 ENSMUST00000114459 Hnrnpa2b1-203 protein_coding
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

70747 90

CTG ...

LLS ...

Ribo-seq
CTG

weak

3 sORFs_org_Mouse
    sORF
    Upstream
Brain, R1E, Spleen_B_cell
71846 237

GTG ...

VDL ...

Ribo-seq
GTG

6 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain, MEF, Neutrophil,
R1E, Spleen_B_cell
71536 171

CTG ...

LVM ...

Ribo-seq
CTG

6 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, BMDC, Brain,
MEF, R1E, Spleen_B_cell
71396 297

GTG ...

VEK ...

Ribo-seq
GTG

3 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain, R1E, Spleen_B_cell
71654 258

CTG ...

LMD ...

Ribo-seq
CTG

5 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain, MEF, R1E,
Spleen_B_cell
910899 114

AGG ...

RVG ...

Ribo-seq
AGG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC
71251 216

ATG ...

MGM ...

Ribo-seq
ATG

5 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain, MEF, Neutrophil,
R1E, Spleen_B_cell
209501 162

GTG ...

VQE ...

Ribo-seq
GTG

10 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
Brain, E14, Liver,
MEF, Neutrophil, NSC,
R1E, Spleen_B_cell, v6-5
69816 33

CTG ...

LQG ...

Ribo-seq
CTG

weak

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain
71039 192

GTG ...

VAI ...

Ribo-seq
GTG

7 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, BMDC, Brain,
MEF, R1E, Spleen_B_cell
71072 165

ATG ...

MEE ...

Ribo-seq
ATG

6 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, BMDC, Brain,
MEF, R1E, Spleen_B_cell
71025 111

GTG ...

VGA ...

Ribo-seq
GTG

7 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, BMDC, Brain,
E14, MEF, R1E,
Spleen_B_cell
71386 255

ATG ...

MDT ...

Ribo-seq
ATG

5 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain, MEF, Neutrophil,
R1E, Spleen_B_cell
587464 39

CTG ...

LWI ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Liver
71775 138

GTG ...

VED ...

Ribo-seq
GTG

8 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC, Brain, E14,
Liver, MEF, R1E,
Spleen_B_cell
71747 123

ATG ...

MAT ...

Ribo-seq
ATG

6 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC, Brain, E14,
MEF, R1E, Spleen_B_cell
1249304 102

ACG ...

TEV ...

Ribo-seq
ACG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
194519 132

GTG ...

VCR ...

Ribo-seq
GTG

3 sORFs_org_Mouse
    sORF
    Upstream
Brain, R1E, Spleen_B_cell
208896 96

GTG ...

VVM ...

Ribo-seq
GTG

4 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, BMDC, Brain,
MEF
1066537 81

ATG ...

MEE ...

Ribo-seq
ATG

3 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC, E14, MEF
1575863 42

ATC ...

IGL ...

Ribo-seq
ATC

1 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
MEF
201706 54

TTG ...

LGM ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain
71685 144

ATG ...

MVV ...

Ribo-seq
ATG

7 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, BMDC, Brain,
MEF, R1E, Spleen_B_cell
68488 156

GTG ...

VQE ...

Ribo-seq
GTG

4 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
Brain, R1E, Spleen_B_cell
71499 183

TTG ...

LEV ...

Ribo-seq
TTG

6 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, BMDC, Brain,
MEF, R1E, Spleen_B_cell
71169 294

TTG ...

LDQ ...

Ribo-seq
TTG

5 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain, MEF, R1E,
Spleen_B_cell
3190 30

CTG ...

LKR ...

Ribo-seq
CTG

4 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
Brain, R1E, Spleen_B_cell
1688856 66

CTG ...

LFL ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
71880 129

CTG ...

LDM ...

Ribo-seq
CTG

7 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC, Brain, E14,
MEF, R1E, Spleen_B_cell
71516 141

GTG ...

VVE ...

Ribo-seq
GTG

7 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC, Brain, Liver,
MEF, R1E, Spleen_B_cell
1439066 51

CTG ...

LRE ...

Ribo-seq
CTG

3 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
Liver, MEF
68798 36

CTG ...

LQA ...

Ribo-seq
CTG

moderate

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, R1E
1249175 219

ATA ...

IMG ...

Ribo-seq
ATA

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
2964 45

CTG ...

LRE ...

Ribo-seq
CTG

4 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
Brain, R1E, Spleen_B_cell
71586 210

ATG ...

MEE ...

Ribo-seq
ATG

4 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain, MEF, R1E,
Spleen_B_cell
71390 243

GTG ...

VDV ...

Ribo-seq
GTG

5 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain, MEF, Neutrophil,
R1E, Spleen_B_cell
71679 231

TTG ...

LGM ...

Ribo-seq
TTG

6 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain, MEF, Neutrophil,
R1E, Spleen_B_cell
70976 225

ATG ...

MAI ...

Ribo-seq
ATG

6 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain, MEF, Neutrophil,
R1E, Spleen_B_cell
3439 81

ATG ...

MSN ...

Ribo-seq
ATG

8 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, E14, Liver,
MEF, R1E, Spleen_B_cell
585851 90

ATG ...

MTT ...

Ribo-seq
ATG

5 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, BMDC, E14,
MEF
70300 42

CTG ...

LPW ...

Ribo-seq
CTG

moderate

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, Spleen_B_cell
2965 ENSMUST00000090002 Hnrnpa2b1-202 protein_coding
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

71679 231

TTG ...

LGM ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Testis
71390 243

GTG ...

VDV ...

Ribo-seq
GTG

2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC, Testis
71536 171

CTG ...

LVM ...

Ribo-seq
CTG

3 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
B_cell, Brain, Testis
70199 60

GTG ...

VDL ...

Ribo-seq
GTG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, Testis
196598 36

ATG ...

MDK ...

Ribo-seq
ATG

strong

1 Johnstone2016
    Alternative
    Downstream
    sORF
Glioma, Liver, MEF,
MESC
71685 144

ATG ...

MVV ...

Ribo-seq
ATG

3 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
B_cell, Brain, Testis
71654 258

CTG ...

LMD ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Testis
71499 183

TTG ...

LEV ...

Ribo-seq
TTG

3 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
B_cell, Brain, Testis
585851 90

ATG ...

MTT ...

Ribo-seq
ATG

2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
B_cell, Brain
3439 81

ATG ...

MSN ...

Ribo-seq
ATG

3 sORFs_org_Mouse
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
Glioma, Liver, MEF,
MESC, Skin_tumor, Testis
71842 195

GTG ...

VQE ...

Ribo-seq
GTG

3 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
B_cell, BMDC, Testis
71155 297

ATG ...

MVT ...

Ribo-seq
ATG

1 Johnstone2016
    InCDS
    Overlapping
    sORF
Glioma, Liver, MEF,
MESC
68798 36

CTG ...

LQA ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Testis
71039 192

GTG ...

VAI ...

Ribo-seq
GTG

3 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
B_cell, Brain, Testis
70976 225

ATG ...

MAI ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Testis
71404 84

CTG ...

LRE ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
BMDC, Testis
70747 90

CTG ...

LLS ...

Ribo-seq
CTG

weak

1 sORFs_org_Mouse
    sORF
    Upstream
Testis
71072 165

ATG ...

MEE ...

Ribo-seq
ATG

3 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
B_cell, Brain, Testis
71386 255

ATG ...

MDT ...

Ribo-seq
ATG

2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC, Testis
71586 210

ATG ...

MEE ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Testis
71169 294

TTG ...

LDQ ...

Ribo-seq
TTG

2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC, Testis
3190 30

CTG ...

LKR ...

Ribo-seq
CTG

3 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
BMDC, Skin_tumor, Testis
71846 237

GTG ...

VDL ...

Ribo-seq
GTG

2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC, Testis
71516 141

GTG ...

VVE ...

Ribo-seq
GTG

4 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, B_cell, Brain,
Testis
71171 69

CTG ...

LKR ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
BMDC, Testis
67598 78

ATG ...

MDT ...

Ribo-seq
ATG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, Testis
71775 138

GTG ...

VED ...

Ribo-seq
GTG

4 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, B_cell, Brain,
Testis
71251 216

ATG ...

MGM ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Testis
71396 297

GTG ...

VEK ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Testis
71747 123

ATG ...

MAT ...

Ribo-seq
ATG

4 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, B_cell, Brain,
Testis
70341 48

TTG ...

LTL ...

Ribo-seq
TTG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Testis
69816 33

CTG ...

LQG ...

Ribo-seq
CTG

weak

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Testis
68488 156

GTG ...

VQE ...

Ribo-seq
GTG

2 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
BMDC, Testis
68778 111

TTG ...

LVL ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Testis
71880 129

CTG ...

LDM ...

Ribo-seq
CTG

4 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, B_cell, Brain,
Testis
208896 96

GTG ...

VVM ...

Ribo-seq
GTG

2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
B_cell, Brain
2964 45

CTG ...

LRE ...

Ribo-seq
CTG

3 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
BMDC, Skin_tumor, Testis
70300 42

CTG ...

LPW ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Testis
71025 111

GTG ...

VGA ...

Ribo-seq
GTG

3 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
B_cell, Brain, Testis
1064462 ENSMUST00000203220 Hnrnpa2b1-204 protein_coding
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

70976 225

ATG ...

MAI ...

Ribo-seq
ATG

5 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14, MEF, NSC,
v6-5
3190 30

CTG ...

LKR ...

Ribo-seq
CTG

6 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
E14, MEF, Neutrophil,
NSC, v6-5
3439 81

ATG ...

MSN ...

Ribo-seq
ATG

6 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, MEF, Neutrophil,
NSC, v6-5
71171 69

CTG ...

LKR ...

Ribo-seq
CTG

6 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
E14, MEF, Neutrophil,
NSC, v6-5
2964 45

CTG ...

LRE ...

Ribo-seq
CTG

6 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
E14, MEF, Neutrophil,
NSC, v6-5
208896 96

GTG ...

VVM ...

Ribo-seq
GTG

5 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14, MEF, Neutrophil,
NSC, v6-5
70341 48

TTG ...

LTL ...

Ribo-seq
TTG

moderate

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, NSC, v6-5
71679 231

TTG ...

LGM ...

Ribo-seq
TTG

5 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14, MEF, NSC,
v6-5
70300 42

CTG ...

LPW ...

Ribo-seq
CTG

moderate

4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, MEF, NSC,
v6-5
201706 54

TTG ...

LGM ...

Ribo-seq
TTG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, v6-5
71846 237

GTG ...

VDL ...

Ribo-seq
GTG

5 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14, MEF, NSC,
v6-5
71072 165

ATG ...

MEE ...

Ribo-seq
ATG

6 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14, MEF, Neutrophil,
NSC, v6-5
71039 192

GTG ...

VAI ...

Ribo-seq
GTG

6 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14, MEF, Neutrophil,
NSC, v6-5
71685 144

ATG ...

MVV ...

Ribo-seq
ATG

6 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14, MEF, Neutrophil,
NSC, v6-5
71536 171

CTG ...

LVM ...

Ribo-seq
CTG

6 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14, MEF, Neutrophil,
NSC, v6-5
71025 111

GTG ...

VGA ...

Ribo-seq
GTG

5 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14, MEF, Neutrophil,
NSC, v6-5
71880 129

CTG ...

LDM ...

Ribo-seq
CTG

5 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14, MEF, Neutrophil,
NSC, v6-5
70199 60

GTG ...

VDL ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
71251 216

ATG ...

MGM ...

Ribo-seq
ATG

5 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14, MEF, NSC,
v6-5
1066537 81

ATG ...

MEE ...

Ribo-seq
ATG

2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Neutrophil, v6-5
71654 258

CTG ...

LMD ...

Ribo-seq
CTG

6 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14, MEF, Neutrophil,
NSC, v6-5
71404 84

CTG ...

LRE ...

Ribo-seq
CTG

6 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
E14, MEF, Neutrophil,
NSC, v6-5
71386 255

ATG ...

MDT ...

Ribo-seq
ATG

5 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14, MEF, NSC,
v6-5
67598 78

ATG ...

MDT ...

Ribo-seq
ATG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
587464 39

CTG ...

LWI ...

Ribo-seq
CTG

3 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14, MEF, NSC
71169 294

TTG ...

LDQ ...

Ribo-seq
TTG

6 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14, MEF, Neutrophil,
NSC, v6-5
71775 138

GTG ...

VED ...

Ribo-seq
GTG

6 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14, MEF, Neutrophil,
NSC, v6-5
71390 243

GTG ...

VDV ...

Ribo-seq
GTG

5 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14, MEF, NSC,
v6-5
71499 183

TTG ...

LEV ...

Ribo-seq
TTG

6 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14, MEF, Neutrophil,
NSC, v6-5
68798 36

CTG ...

LQA ...

Ribo-seq
CTG

moderate

4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, MEF, v6-5
71747 123

ATG ...

MAT ...

Ribo-seq
ATG

5 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14, MEF, Neutrophil,
NSC, v6-5
71516 141

GTG ...

VVE ...

Ribo-seq
GTG

6 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14, MEF, Neutrophil,
NSC, v6-5
1669183 66

GTG ...

VDV ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
69816 33

CTG ...

LQG ...

Ribo-seq
CTG

weak

5 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, MEF, Neutrophil,
NSC, v6-5
71586 210

ATG ...

MEE ...

Ribo-seq
ATG

6 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14, MEF, Neutrophil,
NSC, v6-5
585851 90

ATG ...

MTT ...

Ribo-seq
ATG

5 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14, MEF, Neutrophil,
NSC, v6-5
208572 ENSMUST00000069949 Hnrnpa2b1-201 protein_coding
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

586124 174

TTG ...

LDQ ...

Ribo-seq
TTG

2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, MEF
587464 39

CTG ...

LWI ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, Liver
586889 117

GTG ...

VDL ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3
71404 84

CTG ...

LRE ...

Ribo-seq
CTG

4 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
3T3, Liver, MEF
71155 297

ATG ...

MVT ...

Ribo-seq
ATG

3 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, BMDC, MEF
586998 123

GTG ...

VDV ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3
71842 195

GTG ...

VQE ...

Ribo-seq
GTG

4 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
3T3, Brain, Liver,
MEF
873954 87

TTG ...

LLV ...

Ribo-seq
TTG

weak

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Liver
875766 84

TTG ...

LVE ...

Ribo-seq
TTG

moderate

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Liver
575610 66

ATG ...

MEV ...

Ribo-seq
ATG

strong

2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, BMDC
585955 135

ATG ...

MDT ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3
194519 132

GTG ...

VCR ...

Ribo-seq
GTG

weak

2 sORFs_org_Mouse
    sORF
    Upstream
3T3, Liver
586759 90

ATG ...

MEE ...

Ribo-seq
ATG

2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, BMDC
977675 36

ATT ...

IIT ...

Ribo-seq
ATT

moderate

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
MEF
3190 30

CTG ...

LKR ...

Ribo-seq
CTG

3 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
3T3, Liver, MEF
71790 288

ATG ...

MQK ...

Ribo-seq
ATG

3 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, BMDC, MEF
2964 45

CTG ...

LRE ...

Ribo-seq
CTG

3 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
3T3, Liver, MEF
1470104 60

GTG ...

VEV ...

Ribo-seq
GTG

strong

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC
201706 54

TTG ...

LGM ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
71891 183

GTG ...

VAI ...

Ribo-seq
GTG

4 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, BMDC, Brain,
MEF
586255 111

TTG ...

LGM ...

Ribo-seq
TTG

2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, BMDC
586824 96

ATG ...

MGM ...

Ribo-seq
ATG

2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, BMDC
71388 228

GTG ...

VEE ...

Ribo-seq
GTG

4 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, BMDC, Brain,
MEF
68798 36

CTG ...

LQA ...

Ribo-seq
CTG

moderate

4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, BMDC, Liver,
MEF
586702 144

TTG ...

LGV ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    Alternative
    Downstream
    Overlapping
    sORF
3T3
70747 90

CTG ...

LLS ...

Ribo-seq
CTG

weak

3 sORFs_org_Mouse
    sORF
    Upstream
3T3, Liver, MEF
69816 33

CTG ...

LQG ...

Ribo-seq
CTG

weak

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, BMDC, Liver
586263 138

CTG ...

LMD ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, BMDC
71113 192

GTG ...

VVA ...

Ribo-seq
GTG

4 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, BMDC, Brain,
MEF
875257 81

GTG ...

VEL ...

Ribo-seq
GTG

moderate

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Liver
68488 156

GTG ...

VQE ...

Ribo-seq
GTG

2 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
3T3, Liver
71171 69

CTG ...

LKR ...

Ribo-seq
CTG

4 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
3T3, Liver, MEF
3439 81

ATG ...

MSN ...

Ribo-seq
ATG

4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, BMDC, Liver,
MEF
415726 75

ATC ...

IGL ...

Ribo-seq
ATC

1 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
MEF
71687 210

TTG ...

LVL ...

Ribo-seq
TTG

4 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, BMDC, Brain,
MEF
585047 153

GTG ...

VET ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    Alternative
    Downstream
    Overlapping
    sORF
3T3
71297 204

TTG ...

LGI ...

Ribo-seq
TTG

4 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, BMDC, Brain,
MEF
70300 42

CTG ...

LPW ...

Ribo-seq
CTG

moderate

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, BMDC, Liver
70341 48

TTG ...

LTL ...

Ribo-seq
TTG

moderate

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Liver
585411 105

ATG ...

MAI ...

Ribo-seq
ATG

2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, BMDC
415567 45

ATG ...

MSN ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Liver
71731 189

GTG ...

VAV ...

Ribo-seq
GTG

3 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, BMDC, MEF
415557 36

ATC ...

IGL ...

Ribo-seq
ATC

1 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
MEF
838341 ENSMUST00000204158 Hnrnpa2b1-209 nonsense_mediated_decay
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

415557 36

ATC ...

IGL ...

Ribo-seq
ATC

2 sORFs_org_Mouse
    Alternative
    NMD
    Overlapping
    sORF
    Upstream
BMDC, MEF
194519 132

GTG ...

VCR ...

Ribo-seq
GTG

weak

1 sORFs_org_Mouse
    NMD
    sORF
    Upstream
BMDC
3190 30

CTG ...

LKR ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    Alternative
    NMD
    Overlapping
    sORF
    Upstream
BMDC, MEF
1247753 63

AAG ...

KSG ...

Ribo-seq
AAG

1 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
E14
1243401 42

ATA ...

IMG ...

Ribo-seq
ATA

1 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
E14
1248245 69

ATT ...

IME ...

Ribo-seq
ATT

moderate

1 sORFs_org_Mouse
    InCDS
    NMD
    Overlapping
    sORF
E14
1244458 48

ATG ...

MAI ...

Ribo-seq
ATG

2 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
E14, MEF
909060 72

AAG ...

KWR ...

Ribo-seq
AAG

2 sORFs_org_Mouse
    Alternative
    Downstream
    NMD
    Overlapping
    sORF
BMDC, E14
906616 72

AGG ...

RKR ...

Ribo-seq
AGG

1 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
BMDC
2964 45

CTG ...

LRE ...

Ribo-seq
CTG

3 sORFs_org_Mouse
    Alternative
    NMD
    Overlapping
    sORF
    Upstream
BMDC, MEF
526716 75

CTG ...

LEE ...

Ribo-seq
CTG

4 sORFs_org_Mouse
    Alternative
    Downstream
    NMD
    Overlapping
    sORF
B_cell, BMDC, E14,
MEF
910087 30

ATC ...

ISL ...

Ribo-seq
ATC

weak

2 sORFs_org_Mouse
    NMD
    sORF
    Upstream
BMDC, MEF
67598 78

ATG ...

MDT ...

Ribo-seq
ATG

2 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
E14, MEF
906806 36

ATA ...

ISH ...

Ribo-seq
ATA

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
BMDC
837905 69

ATG ...

MVF ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
MEF
908662 54

GTG ...

VAM ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    Alternative
    Downstream
    NMD
    Overlapping
    sORF
BMDC
908568 189

TTG ...

LEV ...

Ribo-seq
TTG

3 sORFs_org_Mouse
    InCDS
    NMD
    Overlapping
    sORF
BMDC, E14, MEF
909965 66

AGG ...

RRI ...

Ribo-seq
AGG

2 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
BMDC, E14
68488 156

GTG ...

VQE ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    Alternative
    NMD
    Overlapping
    sORF
    Upstream
MEF
68778 111

TTG ...

LVL ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
MEF
1243018 48

AGG ...

RTW ...

Ribo-seq
AGG

1 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
E14
1245372 177

CTG ...

LVM ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    InCDS
    NMD
    Overlapping
    sORF
E14
875766 84

TTG ...

LVE ...

Ribo-seq
TTG

moderate

1 sORFs_org_Mouse
    InCDS
    NMD
    Overlapping
    sORF
MEF
1245068 90

TTG ...

LRN ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    InCDS
    NMD
    Overlapping
    sORF
MEF
873954 87

TTG ...

LLV ...

Ribo-seq
TTG

weak

1 sORFs_org_Mouse
    InCDS
    NMD
    Overlapping
    sORF
MEF
526725 93

TTG ...

LQG ...

Ribo-seq
TTG

2 sORFs_org_Mouse
    Alternative
    Downstream
    NMD
    Overlapping
    sORF
B_cell, MEF
906794 66

AGG ...

RKW ...

Ribo-seq
AGG

1 sORFs_org_Mouse
    Alternative
    Downstream
    NMD
    Overlapping
    sORF
BMDC
415292 150

AAG ...

KEQ ...

Ribo-seq
AAG

2 sORFs_org_Mouse
    InCDS
    NMD
    Overlapping
    sORF
BMDC, MEF
1669183 66

GTG ...

VDV ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
MEF
415354 135

AAG ...

KLF ...

Ribo-seq
AAG

1 sORFs_org_Mouse
    InCDS
    NMD
    Overlapping
    sORF
MEF
526116 81

ATG ...

MVL ...

Ribo-seq
ATG

3 sORFs_org_Mouse
    Alternative
    Downstream
    NMD
    Overlapping
    sORF
B_cell, E14, MEF
415567 45

ATG ...

MSN ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
MEF
70199 60

GTG ...

VDL ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
MEF
70747 90

CTG ...

LLS ...

Ribo-seq
CTG

weak

2 sORFs_org_Mouse
    NMD
    sORF
    Upstream
BMDC, MEF
1248076 198

GTG ...

VAI ...

Ribo-seq
GTG

2 sORFs_org_Mouse
    InCDS
    NMD
    Overlapping
    sORF
E14, MEF
1247112 105

TTG ...

LGI ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
MEF
201706 54

TTG ...

LGM ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
MEF
71114 ENSMUST00000204188 Hnrnpa2b1-210 protein_coding
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

71297 204

TTG ...

LGI ...

Ribo-seq
TTG

9 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
B_cell, Brain, E14,
MEF, Neutrophil, Spleen_B_cell,
Testis, v6-5
586824 96

ATG ...

MGM ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
B_cell
71388 228

GTG ...

VEE ...

Ribo-seq
GTG

11 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
B_cell, BMDC, Brain,
E14, MEF, Neutrophil,
R1E, Spleen_B_cell, Testis,
v6-5
585955 135

ATG ...

MDT ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
B_cell
3439 81

ATG ...

MSN ...

Ribo-seq
ATG

4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell, BMDC, Brain,
C2C12
910329 198

ATT ...

ILV ...

Ribo-seq
ATT

2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC, E14
71891 183

GTG ...

VAI ...

Ribo-seq
GTG

7 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
B_cell, MEF, Neutrophil,
Spleen_B_cell, Testis, v6-5
586255 111

TTG ...

LGM ...

Ribo-seq
TTG

3 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
B_cell, BMDC, Brain
71790 288

ATG ...

MQK ...

Ribo-seq
ATG

8 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
B_cell, BMDC, MEF,
Neutrophil, Spleen_B_cell, Testis,
v6-5
586263 138

CTG ...

LMD ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
B_cell
415726 75

ATC ...

IGL ...

Ribo-seq
ATC

2 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
BMDC, C2C12
415717 96

ATA ...

IGS ...

Ribo-seq
ATA

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
C2C12
910974 99

ATA ...

IMG ...

Ribo-seq
ATA

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC
586759 90

ATG ...

MEE ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
B_cell
586124 174

TTG ...

LDQ ...

Ribo-seq
TTG

2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
B_cell, Brain
910433 78

AAG ...

KWR ...

Ribo-seq
AAG

1 sORFs_org_Mouse
    Alternative
    Downstream
    Overlapping
    sORF
BMDC
71113 192

GTG ...

VVA ...

Ribo-seq
GTG

7 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
B_cell, MEF, Neutrophil,
Spleen_B_cell, Testis, v6-5
586889 117

GTG ...

VDL ...

Ribo-seq
GTG

2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
B_cell, Brain
71155 297

ATG ...

MVT ...

Ribo-seq
ATG

9 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
B_cell, BMDC, C2C12,
MEF, Neutrophil, Spleen_B_cell,
Testis, v6-5
71731 189

GTG ...

VAV ...

Ribo-seq
GTG

7 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
B_cell, MEF, Neutrophil,
Spleen_B_cell, Testis, v6-5
585411 105

ATG ...

MAI ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
B_cell
71404 84

CTG ...

LRE ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
B_cell, Brain
586998 123

GTG ...

VDV ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
B_cell
71687 210

TTG ...

LVL ...

Ribo-seq
TTG

10 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
B_cell, Brain, E14,
MEF, Neutrophil, R1E,
Spleen_B_cell, Testis, v6-5
71171 69

CTG ...

LKR ...

Ribo-seq
CTG

3 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
B_cell, BMDC, Brain
839672 177

GTG ...

VEK ...

Ribo-seq
GTG

2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
B_cell, Brain
986414 ENSMUST00000203954 Hnrnpa2b1-207 nonsense_mediated_decay
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

3190 30

CTG ...

LKR ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Alternative
    NMD
    Overlapping
    sORF
    Upstream
Liver
68488 156

GTG ...

VQE ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    Alternative
    NMD
    Overlapping
    sORF
    Upstream
Liver
2964 45

CTG ...

LRE ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Alternative
    NMD
    Overlapping
    sORF
    Upstream
Liver
526117 ENSMUST00000204090 Hnrnpa2b1-208 retained_intron
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

526725 93

TTG ...

LQG ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    Intronic
    sORF
Spleen_B_cell
526116 81

ATG ...

MVL ...

Ribo-seq
ATG

strong

1 sORFs_org_Mouse
    Intronic
    sORF
Spleen_B_cell
526716 75

CTG ...

LEE ...

Ribo-seq
CTG

strong

1 sORFs_org_Mouse
    Intronic
    sORF
Spleen_B_cell
196599 ENSMUST00000204885 Hnrnpa2b1-211 retained_intron
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

196598 36

ATG ...

MDK ...

Ribo-seq
ATG

strong

1 sORFs_org_Mouse
    Intronic
    sORF
Brain
1247647 48

ATG ...

MPL ...

Ribo-seq
ATG

moderate

1 sORFs_org_Mouse
    Intronic
    sORF
E14
836030 ENSMUST00000203253 Hnrnpa2b1-205 protein_coding
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

836029 78

GTG ...

VET ...

Ribo-seq
GTG

2 sORFs_org_Mouse
    sORF
B_cell, Brain
838089 69

TTG ...

LGV ...

Ribo-seq
TTG

2 sORFs_org_Mouse
    sORF
B_cell, Brain
2991539 UNKNOWN_TRANSCRIPT
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

71155 297

ATG ...

MVT ...

Predicted
ATG

2 Samandi2017
    sORF

ORFs

142 ORFs
11 known transcripts
287 ORF to known transcript associations

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF Length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Start codon

The start codon sequence of the ORF.

ORF annotations

A comma-separated list of all the annotations computed by our algorithm for the ORF. This list includes the annotations computed for the ORF for all transcripts. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of all the cell types in which the ORF has already been identified.

Transcripts

Display all the transcripts related to the entry.

1247415 150

ATA...

ING...

ATA Intronic
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

415139 ENSMUST00000205204 Hnrnpa2b1-213 retained_intron Ribo-seq
moderate 1 sORFs_org_Mouse
70747 90

CTG...

LLS...

CTG sORF
Upstream
Intronic
NMD
Brain, R1E, Spleen_B_cell,
B_cell, E14, Liver,
MEF, Neutrophil, NSC,
v6-5, Testis, 3T3,
BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

194520 ENSMUST00000114459 Hnrnpa2b1-203 protein_coding Ribo-seq
weak 3 sORFs_org_Mouse
415139 ENSMUST00000205204 Hnrnpa2b1-213 retained_intron Ribo-seq
weak 10 sORFs_org_Mouse
2965 ENSMUST00000090002 Hnrnpa2b1-202 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
208572 ENSMUST00000069949 Hnrnpa2b1-201 protein_coding Ribo-seq
weak 3 sORFs_org_Mouse
838341 ENSMUST00000204158 Hnrnpa2b1-209 nonsense_mediated_decay Ribo-seq
weak 2 sORFs_org_Mouse
2964 45

CTG...

LRE...

CTG Intronic
sORF
Alternative
Overlapping
Upstream
NMD
B_cell, Brain, E14,
Liver, MEF, Neutrophil,
NSC, v6-5, 3T3,
BMDC, R1E, Spleen_B_cell,
Skin_tumor, Testis
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

415139 ENSMUST00000205204 Hnrnpa2b1-213 retained_intron Ribo-seq
weak 5 sORFs_org_Mouse
1064462 ENSMUST00000203220 Hnrnpa2b1-204 protein_coding Ribo-seq
6 sORFs_org_Mouse
208572 ENSMUST00000069949 Hnrnpa2b1-201 protein_coding Ribo-seq
3 sORFs_org_Mouse
838341 ENSMUST00000204158 Hnrnpa2b1-209 nonsense_mediated_decay Ribo-seq
3 sORFs_org_Mouse
986414 ENSMUST00000203954 Hnrnpa2b1-207 nonsense_mediated_decay Ribo-seq
1 sORFs_org_Mouse
194520 ENSMUST00000114459 Hnrnpa2b1-203 protein_coding Ribo-seq
4 sORFs_org_Mouse
2965 ENSMUST00000090002 Hnrnpa2b1-202 protein_coding Ribo-seq
3 sORFs_org_Mouse
71679 231

TTG...

LGM...

TTG InCDS
Overlapping
sORF
Testis, E14, MEF,
NSC, v6-5, Brain,
Neutrophil, R1E, Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

2965 ENSMUST00000090002 Hnrnpa2b1-202 protein_coding Ribo-seq
1 sORFs_org_Mouse
1064462 ENSMUST00000203220 Hnrnpa2b1-204 protein_coding Ribo-seq
5 sORFs_org_Mouse
194520 ENSMUST00000114459 Hnrnpa2b1-203 protein_coding Ribo-seq
6 sORFs_org_Mouse
70976 225

ATG...

MAI...

ATG InCDS
Overlapping
sORF
E14, MEF, NSC,
v6-5, Testis, Brain,
Neutrophil, R1E, Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1064462 ENSMUST00000203220 Hnrnpa2b1-204 protein_coding Ribo-seq
5 sORFs_org_Mouse
2965 ENSMUST00000090002 Hnrnpa2b1-202 protein_coding Ribo-seq
1 sORFs_org_Mouse
194520 ENSMUST00000114459 Hnrnpa2b1-203 protein_coding Ribo-seq
6 sORFs_org_Mouse
586124 174

TTG...

LDQ...

TTG InCDS
Overlapping
sORF
3T3, MEF, B_cell,
Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

208572 ENSMUST00000069949 Hnrnpa2b1-201 protein_coding Ribo-seq
2 sORFs_org_Mouse
71114 ENSMUST00000204188 Hnrnpa2b1-210 protein_coding Ribo-seq
2 sORFs_org_Mouse
415557 36

ATC...

IGL...

ATC Alternative
NMD
Overlapping
sORF
Upstream
Intronic
BMDC, MEF, C2C12,
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

838341 ENSMUST00000204158 Hnrnpa2b1-209 nonsense_mediated_decay Ribo-seq
2 sORFs_org_Mouse
415139 ENSMUST00000205204 Hnrnpa2b1-213 retained_intron Ribo-seq
strong 2 sORFs_org_Mouse
208572 ENSMUST00000069949 Hnrnpa2b1-201 protein_coding Ribo-seq
1 sORFs_org_Mouse
3190 30

CTG...

LKR...

CTG Alternative
Overlapping
sORF
Upstream
NMD
Intronic
E14, MEF, Neutrophil,
NSC, v6-5, BMDC,
Liver, 3T3, Skin_tumor,
Testis, Brain, R1E,
Spleen_B_cell, B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1064462 ENSMUST00000203220 Hnrnpa2b1-204 protein_coding Ribo-seq
6 sORFs_org_Mouse
838341 ENSMUST00000204158 Hnrnpa2b1-209 nonsense_mediated_decay Ribo-seq
2 sORFs_org_Mouse
986414 ENSMUST00000203954 Hnrnpa2b1-207 nonsense_mediated_decay Ribo-seq
1 sORFs_org_Mouse
208572 ENSMUST00000069949 Hnrnpa2b1-201 protein_coding Ribo-seq
3 sORFs_org_Mouse
2965 ENSMUST00000090002 Hnrnpa2b1-202 protein_coding Ribo-seq
3 sORFs_org_Mouse
194520 ENSMUST00000114459 Hnrnpa2b1-203 protein_coding Ribo-seq
4 sORFs_org_Mouse
415139 ENSMUST00000205204 Hnrnpa2b1-213 retained_intron Ribo-seq
moderate 5 sORFs_org_Mouse
837905 69

ATG...

MVF...

ATG Intronic
sORF
Alternative
InCDS
NMD
Overlapping
B_cell, Brain, Liver,
MEF, Neutrophil
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

415139 ENSMUST00000205204 Hnrnpa2b1-213 retained_intron Ribo-seq
strong 5 sORFs_org_Mouse
838341 ENSMUST00000204158 Hnrnpa2b1-209 nonsense_mediated_decay Ribo-seq
1 sORFs_org_Mouse
71846 237

GTG...

VDL...

GTG InCDS
Overlapping
sORF
Brain, MEF, Neutrophil,
R1E, Spleen_B_cell, E14,
NSC, v6-5, BMDC,
Testis
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

194520 ENSMUST00000114459 Hnrnpa2b1-203 protein_coding Ribo-seq
6 sORFs_org_Mouse
1064462 ENSMUST00000203220 Hnrnpa2b1-204 protein_coding Ribo-seq
5 sORFs_org_Mouse
2965 ENSMUST00000090002 Hnrnpa2b1-202 protein_coding Ribo-seq
2 sORFs_org_Mouse
194519 132

GTG...

VCR...

GTG NMD
sORF
Upstream
Intronic
BMDC, 3T3, Liver,
B_cell, Brain, E14,
MEF, Neutrophil, NSC,
v6-5, R1E, Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

838341 ENSMUST00000204158 Hnrnpa2b1-209 nonsense_mediated_decay Ribo-seq
weak 1 sORFs_org_Mouse
208572 ENSMUST00000069949 Hnrnpa2b1-201 protein_coding Ribo-seq
weak 2 sORFs_org_Mouse
415139 ENSMUST00000205204 Hnrnpa2b1-213 retained_intron Ribo-seq
weak 9 sORFs_org_Mouse
194520 ENSMUST00000114459 Hnrnpa2b1-203 protein_coding Ribo-seq
3 sORFs_org_Mouse
587464 39

CTG...

LWI...

CTG InCDS
Overlapping
sORF
3T3, Liver, E14,
MEF, NSC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

208572 ENSMUST00000069949 Hnrnpa2b1-201 protein_coding Ribo-seq
2 sORFs_org_Mouse
194520 ENSMUST00000114459 Hnrnpa2b1-203 protein_coding Ribo-seq
1 sORFs_org_Mouse
1064462 ENSMUST00000203220 Hnrnpa2b1-204 protein_coding Ribo-seq
3 sORFs_org_Mouse
71536 171

CTG...

LVM...

CTG InCDS
Overlapping
sORF
3T3, BMDC, Brain,
MEF, R1E, Spleen_B_cell,
B_cell, Testis, E14,
Neutrophil, NSC, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

194520 ENSMUST00000114459 Hnrnpa2b1-203 protein_coding Ribo-seq
6 sORFs_org_Mouse
2965 ENSMUST00000090002 Hnrnpa2b1-202 protein_coding Ribo-seq
3 sORFs_org_Mouse
1064462 ENSMUST00000203220 Hnrnpa2b1-204 protein_coding Ribo-seq
6 sORFs_org_Mouse
71390 243

GTG...

VDV...

GTG InCDS
Overlapping
sORF
BMDC, Testis, E14,
MEF, NSC, v6-5,
Brain, Neutrophil, R1E,
Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

2965 ENSMUST00000090002 Hnrnpa2b1-202 protein_coding Ribo-seq
2 sORFs_org_Mouse
1064462 ENSMUST00000203220 Hnrnpa2b1-204 protein_coding Ribo-seq
5 sORFs_org_Mouse
194520 ENSMUST00000114459 Hnrnpa2b1-203 protein_coding Ribo-seq
5 sORFs_org_Mouse
1244442 81

AGG...

RPH...

AGG Intronic
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

415139 ENSMUST00000205204 Hnrnpa2b1-213 retained_intron Ribo-seq
1 sORFs_org_Mouse
1248441 222

ATG...

MQK...

ATG Intronic
sORF
E14, MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

415139 ENSMUST00000205204 Hnrnpa2b1-213 retained_intron Ribo-seq
moderate 2 sORFs_org_Mouse
71297 204

TTG...

LGI...

TTG InCDS
Overlapping
sORF
B_cell, Brain, E14,
MEF, Neutrophil, Spleen_B_cell,
Testis, v6-5, 3T3,
BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

71114 ENSMUST00000204188 Hnrnpa2b1-210 protein_coding Ribo-seq
9 sORFs_org_Mouse
208572 ENSMUST00000069949 Hnrnpa2b1-201 protein_coding Ribo-seq
4 sORFs_org_Mouse
586824 96

ATG...

MGM...

ATG InCDS
Overlapping
sORF
B_cell, 3T3, BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

71114 ENSMUST00000204188 Hnrnpa2b1-210 protein_coding Ribo-seq
1 sORFs_org_Mouse
208572 ENSMUST00000069949 Hnrnpa2b1-201 protein_coding Ribo-seq
2 sORFs_org_Mouse
526725 93

TTG...

LQG...

TTG Intronic
sORF
Alternative
Downstream
NMD
Overlapping
Spleen_B_cell, B_cell, MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

526117 ENSMUST00000204090 Hnrnpa2b1-208 retained_intron Ribo-seq
1 sORFs_org_Mouse
838341 ENSMUST00000204158 Hnrnpa2b1-209 nonsense_mediated_decay Ribo-seq
2 sORFs_org_Mouse
586889 117

GTG...

VDL...

GTG InCDS
Overlapping
sORF
3T3, B_cell, Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

208572 ENSMUST00000069949 Hnrnpa2b1-201 protein_coding Ribo-seq
1 sORFs_org_Mouse
71114 ENSMUST00000204188 Hnrnpa2b1-210 protein_coding Ribo-seq
2 sORFs_org_Mouse
71404 84

CTG...

LRE...

CTG Alternative
Overlapping
sORF
Upstream
3T3, Liver, MEF,
BMDC, Testis, E14,
Neutrophil, NSC, v6-5,
B_cell, Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

208572 ENSMUST00000069949 Hnrnpa2b1-201 protein_coding Ribo-seq
4 sORFs_org_Mouse
2965 ENSMUST00000090002 Hnrnpa2b1-202 protein_coding Ribo-seq
2 sORFs_org_Mouse
1064462 ENSMUST00000203220 Hnrnpa2b1-204 protein_coding Ribo-seq
6 sORFs_org_Mouse
71114 ENSMUST00000204188 Hnrnpa2b1-210 protein_coding Ribo-seq
2 sORFs_org_Mouse
71155 297

ATG...

MVT...

ATG InCDS
Overlapping
sORF
3T3, BMDC, MEF,
Glioma, Liver, MESC,
B_cell, C2C12,
Neutrophil, Spleen_B_cell, Testis,
v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

208572 ENSMUST00000069949 Hnrnpa2b1-201 protein_coding Ribo-seq
3 sORFs_org_Mouse
2965 ENSMUST00000090002 Hnrnpa2b1-202 protein_coding Ribo-seq
1 Johnstone2016
2991539 UNKNOWN_TRANSCRIPT Predicted
2 Samandi2017
71114 ENSMUST00000204188 Hnrnpa2b1-210 protein_coding Ribo-seq
9 sORFs_org_Mouse
1247753 63

AAG...

KSG...

AAG Alternative
InCDS
NMD
Overlapping
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

838341 ENSMUST00000204158 Hnrnpa2b1-209 nonsense_mediated_decay Ribo-seq
1 sORFs_org_Mouse
586998 123

GTG...

VDV...

GTG InCDS
Overlapping
sORF
3T3, B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

208572 ENSMUST00000069949 Hnrnpa2b1-201 protein_coding Ribo-seq
1 sORFs_org_Mouse
71114 ENSMUST00000204188 Hnrnpa2b1-210 protein_coding Ribo-seq
1 sORFs_org_Mouse
70199 60

GTG...

VDL...

GTG Alternative
InCDS
Overlapping
sORF
NMD
BMDC, Testis, MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

2965 ENSMUST00000090002 Hnrnpa2b1-202 protein_coding Ribo-seq
2 sORFs_org_Mouse
1064462 ENSMUST00000203220 Hnrnpa2b1-204 protein_coding Ribo-seq
1 sORFs_org_Mouse
838341 ENSMUST00000204158 Hnrnpa2b1-209 nonsense_mediated_decay Ribo-seq
1 sORFs_org_Mouse
71842 195

GTG...

VQE...

GTG Alternative
Overlapping
sORF
Upstream
3T3, Brain, Liver,
MEF, B_cell, BMDC,
Testis
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

208572 ENSMUST00000069949 Hnrnpa2b1-201 protein_coding Ribo-seq
4 sORFs_org_Mouse
2965 ENSMUST00000090002 Hnrnpa2b1-202 protein_coding Ribo-seq
3 sORFs_org_Mouse
1248379 93

GTG...

VVA...

GTG Intronic
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

415139 ENSMUST00000205204 Hnrnpa2b1-213 retained_intron Ribo-seq
moderate 1 sORFs_org_Mouse
1248200 99

ATT...

ILV...

ATT Intronic
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

415139 ENSMUST00000205204 Hnrnpa2b1-213 retained_intron Ribo-seq
moderate 1 sORFs_org_Mouse
873954 87

TTG...

LLV...

TTG InCDS
Overlapping
sORF
NMD
Intronic
Liver, MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

208572 ENSMUST00000069949 Hnrnpa2b1-201 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
838341 ENSMUST00000204158 Hnrnpa2b1-209 nonsense_mediated_decay Ribo-seq
weak 1 sORFs_org_Mouse
415139 ENSMUST00000205204 Hnrnpa2b1-213 retained_intron Ribo-seq
weak 1 sORFs_org_Mouse
196598 36

ATG...

MDK...

ATG Alternative
Downstream
sORF
Intronic
Glioma, Liver, MEF,
MESC, Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

2965 ENSMUST00000090002 Hnrnpa2b1-202 protein_coding Ribo-seq
strong 1 Johnstone2016
196599 ENSMUST00000204885 Hnrnpa2b1-211 retained_intron Ribo-seq
strong 1 sORFs_org_Mouse
71685 144

ATG...

MVV...

ATG InCDS
Overlapping
sORF
B_cell, Brain, Testis,
E14, MEF, Neutrophil,
NSC, v6-5, 3T3,
BMDC, R1E, Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

2965 ENSMUST00000090002 Hnrnpa2b1-202 protein_coding Ribo-seq
3 sORFs_org_Mouse
1064462 ENSMUST00000203220 Hnrnpa2b1-204 protein_coding Ribo-seq
6 sORFs_org_Mouse
194520 ENSMUST00000114459 Hnrnpa2b1-203 protein_coding Ribo-seq
7 sORFs_org_Mouse
875766 84

TTG...

LVE...

TTG InCDS
Overlapping
sORF
Intronic
NMD
Liver, MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

208572 ENSMUST00000069949 Hnrnpa2b1-201 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
415139 ENSMUST00000205204 Hnrnpa2b1-213 retained_intron Ribo-seq
moderate 1 sORFs_org_Mouse
838341 ENSMUST00000204158 Hnrnpa2b1-209 nonsense_mediated_decay Ribo-seq
moderate 1 sORFs_org_Mouse
71654 258

CTG...

LMD...

CTG InCDS
Overlapping
sORF
Testis, Brain, MEF,
R1E, Spleen_B_cell, E14,
Neutrophil, NSC, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

2965 ENSMUST00000090002 Hnrnpa2b1-202 protein_coding Ribo-seq
1 sORFs_org_Mouse
194520 ENSMUST00000114459 Hnrnpa2b1-203 protein_coding Ribo-seq
5 sORFs_org_Mouse
1064462 ENSMUST00000203220 Hnrnpa2b1-204 protein_coding Ribo-seq
6 sORFs_org_Mouse
575610 66

ATG...

MEV...

ATG InCDS
Overlapping
sORF
3T3, BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

208572 ENSMUST00000069949 Hnrnpa2b1-201 protein_coding Ribo-seq
strong 2 sORFs_org_Mouse
585955 135

ATG...

MDT...

ATG InCDS
Overlapping
sORF
3T3, B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

208572 ENSMUST00000069949 Hnrnpa2b1-201 protein_coding Ribo-seq
1 sORFs_org_Mouse
71114 ENSMUST00000204188 Hnrnpa2b1-210 protein_coding Ribo-seq
1 sORFs_org_Mouse
415494 93

ATA...

IGS...

ATA Intronic
sORF
C2C12, E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

415139 ENSMUST00000205204 Hnrnpa2b1-213 retained_intron Ribo-seq
2 sORFs_org_Mouse
69816 33

CTG...

LQG...

CTG Intronic
sORF
Alternative
InCDS
Overlapping
B_cell, Brain, Liver,
MEF, 3T3, BMDC,
Testis, E14, Neutrophil,
NSC, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

415139 ENSMUST00000205204 Hnrnpa2b1-213 retained_intron Ribo-seq
weak 4 sORFs_org_Mouse
194520 ENSMUST00000114459 Hnrnpa2b1-203 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
208572 ENSMUST00000069949 Hnrnpa2b1-201 protein_coding Ribo-seq
weak 3 sORFs_org_Mouse
2965 ENSMUST00000090002 Hnrnpa2b1-202 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
1064462 ENSMUST00000203220 Hnrnpa2b1-204 protein_coding Ribo-seq
weak 5 sORFs_org_Mouse
3439 81

ATG...

MSN...

ATG Alternative
InCDS
Overlapping
sORF
E14, MEF, Neutrophil,
NSC, v6-5, Glioma,
Liver, MESC, Skin_tumor,
Testis, B_cell, BMDC,
Brain, C2C12, 3T3,
R1E, Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1064462 ENSMUST00000203220 Hnrnpa2b1-204 protein_coding Ribo-seq
6 sORFs_org_Mouse
2965 ENSMUST00000090002 Hnrnpa2b1-202 protein_coding Ribo-seq
3 sORFs_org_Mouse
Johnstone2016
71114 ENSMUST00000204188 Hnrnpa2b1-210 protein_coding Ribo-seq
4 sORFs_org_Mouse
208572 ENSMUST00000069949 Hnrnpa2b1-201 protein_coding Ribo-seq
4 sORFs_org_Mouse
194520 ENSMUST00000114459 Hnrnpa2b1-203 protein_coding Ribo-seq
8 sORFs_org_Mouse
71396 297

GTG...

VEK...

GTG InCDS
Overlapping
sORF
Brain, R1E, Spleen_B_cell,
Testis
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

194520 ENSMUST00000114459 Hnrnpa2b1-203 protein_coding Ribo-seq
3 sORFs_org_Mouse
2965 ENSMUST00000090002 Hnrnpa2b1-202 protein_coding Ribo-seq
1 sORFs_org_Mouse
71171 69

CTG...

LKR...

CTG Alternative
Overlapping
sORF
Upstream
E14, MEF, Neutrophil,
NSC, v6-5, BMDC,
Testis, 3T3, Liver,
B_cell, Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1064462 ENSMUST00000203220 Hnrnpa2b1-204 protein_coding Ribo-seq
6 sORFs_org_Mouse
2965 ENSMUST00000090002 Hnrnpa2b1-202 protein_coding Ribo-seq
2 sORFs_org_Mouse
208572 ENSMUST00000069949 Hnrnpa2b1-201 protein_coding Ribo-seq
4 sORFs_org_Mouse
71114 ENSMUST00000204188 Hnrnpa2b1-210 protein_coding Ribo-seq
3 sORFs_org_Mouse
68778 111

TTG...

LVL...

TTG Intronic
sORF
Alternative
InCDS
NMD
Overlapping
E14, MEF, Testis
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

415139 ENSMUST00000205204 Hnrnpa2b1-213 retained_intron Ribo-seq
strong 2 sORFs_org_Mouse
838341 ENSMUST00000204158 Hnrnpa2b1-209 nonsense_mediated_decay Ribo-seq
1 sORFs_org_Mouse
2965 ENSMUST00000090002 Hnrnpa2b1-202 protein_coding Ribo-seq
1 sORFs_org_Mouse
71499 183

TTG...

LEV...

TTG InCDS
Overlapping
sORF
B_cell, Brain, Testis,
3T3, BMDC, MEF,
R1E, Spleen_B_cell, E14,
Neutrophil, NSC, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

2965 ENSMUST00000090002 Hnrnpa2b1-202 protein_coding Ribo-seq
3 sORFs_org_Mouse
194520 ENSMUST00000114459 Hnrnpa2b1-203 protein_coding Ribo-seq
6 sORFs_org_Mouse
1064462 ENSMUST00000203220 Hnrnpa2b1-204 protein_coding Ribo-seq
6 sORFs_org_Mouse
1244889 207

AGG...

RHC...

AGG Intronic
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

415139 ENSMUST00000205204 Hnrnpa2b1-213 retained_intron Ribo-seq
moderate 1 sORFs_org_Mouse
1243401 42

ATA...

IMG...

ATA Alternative
InCDS
NMD
Overlapping
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

838341 ENSMUST00000204158 Hnrnpa2b1-209 nonsense_mediated_decay Ribo-seq
1 sORFs_org_Mouse
1248245 69

ATT...

IME...

ATT InCDS
NMD
Overlapping
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

838341 ENSMUST00000204158 Hnrnpa2b1-209 nonsense_mediated_decay Ribo-seq
moderate 1 sORFs_org_Mouse
71388 228

GTG...

VEE...

GTG InCDS
Overlapping
sORF
B_cell, BMDC, Brain,
E14, MEF, Neutrophil,
R1E, Spleen_B_cell, Testis,
v6-5, 3T3
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

71114 ENSMUST00000204188 Hnrnpa2b1-210 protein_coding Ribo-seq
11 sORFs_org_Mouse
208572 ENSMUST00000069949 Hnrnpa2b1-201 protein_coding Ribo-seq
4 sORFs_org_Mouse
910899 114

AGG...

RVG...

AGG InCDS
Overlapping
sORF
BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

194520 ENSMUST00000114459 Hnrnpa2b1-203 protein_coding Ribo-seq
1 sORFs_org_Mouse
71251 216

ATG...

MGM...

ATG InCDS
Overlapping
sORF
Brain, MEF, Neutrophil,
R1E, Spleen_B_cell, E14,
NSC, v6-5, Testis
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

194520 ENSMUST00000114459 Hnrnpa2b1-203 protein_coding Ribo-seq
5 sORFs_org_Mouse
1064462 ENSMUST00000203220 Hnrnpa2b1-204 protein_coding Ribo-seq
5 sORFs_org_Mouse
2965 ENSMUST00000090002 Hnrnpa2b1-202 protein_coding Ribo-seq
1 sORFs_org_Mouse
209501 162

GTG...

VQE...

GTG Alternative
Overlapping
sORF
Upstream
Brain, E14, Liver,
MEF, Neutrophil, NSC,
R1E, Spleen_B_cell, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

194520 ENSMUST00000114459 Hnrnpa2b1-203 protein_coding Ribo-seq
10 sORFs_org_Mouse
586759 90

ATG...

MEE...

ATG InCDS
Overlapping
sORF
3T3, BMDC, B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

208572 ENSMUST00000069949 Hnrnpa2b1-201 protein_coding Ribo-seq
2 sORFs_org_Mouse
71114 ENSMUST00000204188 Hnrnpa2b1-210 protein_coding Ribo-seq
1 sORFs_org_Mouse
585851 90

ATG...

MTT...

ATG InCDS
Overlapping
sORF
B_cell, Brain, 3T3,
BMDC, E14, MEF,
Neutrophil, NSC, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

2965 ENSMUST00000090002 Hnrnpa2b1-202 protein_coding Ribo-seq
2 sORFs_org_Mouse
194520 ENSMUST00000114459 Hnrnpa2b1-203 protein_coding Ribo-seq
5 sORFs_org_Mouse
1064462 ENSMUST00000203220 Hnrnpa2b1-204 protein_coding Ribo-seq
5 sORFs_org_Mouse
208896 96

GTG...

VVM...

GTG InCDS
Overlapping
sORF
E14, MEF, Neutrophil,
NSC, v6-5, 3T3,
BMDC, Brain, B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1064462 ENSMUST00000203220 Hnrnpa2b1-204 protein_coding Ribo-seq
5 sORFs_org_Mouse
194520 ENSMUST00000114459 Hnrnpa2b1-203 protein_coding Ribo-seq
4 sORFs_org_Mouse
2965 ENSMUST00000090002 Hnrnpa2b1-202 protein_coding Ribo-seq
2 sORFs_org_Mouse
70341 48

TTG...

LTL...

TTG Alternative
InCDS
Overlapping
sORF
Intronic
E14, NSC, v6-5,
B_cell, Brain, Liver,
MEF, Testis, 3T3
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1064462 ENSMUST00000203220 Hnrnpa2b1-204 protein_coding Ribo-seq
moderate 3 sORFs_org_Mouse
415139 ENSMUST00000205204 Hnrnpa2b1-213 retained_intron Ribo-seq
moderate 4 sORFs_org_Mouse
2965 ENSMUST00000090002 Hnrnpa2b1-202 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
208572 ENSMUST00000069949 Hnrnpa2b1-201 protein_coding Ribo-seq
moderate 2 sORFs_org_Mouse
1244458 48

ATG...

MAI...

ATG Alternative
InCDS
NMD
Overlapping
sORF
E14, MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

838341 ENSMUST00000204158 Hnrnpa2b1-209 nonsense_mediated_decay Ribo-seq
2 sORFs_org_Mouse
1243297 51

AAG...

KIK...

AAG Intronic
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

415139 ENSMUST00000205204 Hnrnpa2b1-213 retained_intron Ribo-seq
weak 1 sORFs_org_Mouse
836029 78

GTG...

VET...

GTG sORF
B_cell, Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

836030 ENSMUST00000203253 Hnrnpa2b1-205 protein_coding Ribo-seq
2 sORFs_org_Mouse
977675 36

ATT...

IIT...

ATT InCDS
Overlapping
sORF
MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

208572 ENSMUST00000069949 Hnrnpa2b1-201 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
526116 81

ATG...

MVL...

ATG Intronic
sORF
Alternative
Downstream
NMD
Overlapping
Spleen_B_cell, B_cell, E14,
MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

526117 ENSMUST00000204090 Hnrnpa2b1-208 retained_intron Ribo-seq
strong 1 sORFs_org_Mouse
838341 ENSMUST00000204158 Hnrnpa2b1-209 nonsense_mediated_decay Ribo-seq
3 sORFs_org_Mouse
71790 288

ATG...

MQK...

ATG InCDS
Overlapping
sORF
3T3, BMDC, MEF,
B_cell, Neutrophil, Spleen_B_cell,
Testis, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

208572 ENSMUST00000069949 Hnrnpa2b1-201 protein_coding Ribo-seq
3 sORFs_org_Mouse
71114 ENSMUST00000204188 Hnrnpa2b1-210 protein_coding Ribo-seq
8 sORFs_org_Mouse
909060 72

AAG...

KWR...

AAG Alternative
Downstream
NMD
Overlapping
sORF
BMDC, E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

838341 ENSMUST00000204158 Hnrnpa2b1-209 nonsense_mediated_decay Ribo-seq
2 sORFs_org_Mouse
1470104 60

GTG...

VEV...

GTG InCDS
Overlapping
sORF
BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

208572 ENSMUST00000069949 Hnrnpa2b1-201 protein_coding Ribo-seq
strong 1 sORFs_org_Mouse
906616 72

AGG...

RKR...

AGG Alternative
InCDS
NMD
Overlapping
sORF
BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

838341 ENSMUST00000204158 Hnrnpa2b1-209 nonsense_mediated_decay Ribo-seq
1 sORFs_org_Mouse
1687794 243

GTG...

VTV...

GTG Intronic
sORF
MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

415139 ENSMUST00000205204 Hnrnpa2b1-213 retained_intron Ribo-seq
1 sORFs_org_Mouse
71039 192

GTG...

VAI...

GTG InCDS
Overlapping
sORF
3T3, BMDC, Brain,
MEF, R1E, Spleen_B_cell,
B_cell, Testis, E14,
Neutrophil, NSC, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

194520 ENSMUST00000114459 Hnrnpa2b1-203 protein_coding Ribo-seq
7 sORFs_org_Mouse
2965 ENSMUST00000090002 Hnrnpa2b1-202 protein_coding Ribo-seq
3 sORFs_org_Mouse
1064462 ENSMUST00000203220 Hnrnpa2b1-204 protein_coding Ribo-seq
6 sORFs_org_Mouse
201706 54

TTG...

LGM...

TTG Alternative
InCDS
Overlapping
sORF
NMD
BMDC, MEF, v6-5,
Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

208572 ENSMUST00000069949 Hnrnpa2b1-201 protein_coding Ribo-seq
1 sORFs_org_Mouse
1064462 ENSMUST00000203220 Hnrnpa2b1-204 protein_coding Ribo-seq
2 sORFs_org_Mouse
194520 ENSMUST00000114459 Hnrnpa2b1-203 protein_coding Ribo-seq
1 sORFs_org_Mouse
838341 ENSMUST00000204158 Hnrnpa2b1-209 nonsense_mediated_decay Ribo-seq
1 sORFs_org_Mouse
910329 198

ATT...

ILV...

ATT InCDS
Overlapping
sORF
BMDC, E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

71114 ENSMUST00000204188 Hnrnpa2b1-210 protein_coding Ribo-seq
2 sORFs_org_Mouse
71891 183

GTG...

VAI...

GTG InCDS
Overlapping
sORF
3T3, BMDC, Brain,
MEF, B_cell, Neutrophil,
Spleen_B_cell, Testis, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

208572 ENSMUST00000069949 Hnrnpa2b1-201 protein_coding Ribo-seq
4 sORFs_org_Mouse
71114 ENSMUST00000204188 Hnrnpa2b1-210 protein_coding Ribo-seq
7 sORFs_org_Mouse
71072 165

ATG...

MEE...

ATG InCDS
Overlapping
sORF
3T3, BMDC, Brain,
MEF, R1E, Spleen_B_cell,
E14, Neutrophil, NSC,
v6-5, B_cell, Testis
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

194520 ENSMUST00000114459 Hnrnpa2b1-203 protein_coding Ribo-seq
6 sORFs_org_Mouse
1064462 ENSMUST00000203220 Hnrnpa2b1-204 protein_coding Ribo-seq
6 sORFs_org_Mouse
2965 ENSMUST00000090002 Hnrnpa2b1-202 protein_coding Ribo-seq
3 sORFs_org_Mouse
1248064 162

GTG...

VEE...

GTG Intronic
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

415139 ENSMUST00000205204 Hnrnpa2b1-213 retained_intron Ribo-seq
strong 1 sORFs_org_Mouse
68798 36

CTG...

LQA...

CTG Alternative
InCDS
Overlapping
sORF
Intronic
Testis, 3T3, BMDC,
Liver, MEF, B_cell,
Brain, R1E, E14,
v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

2965 ENSMUST00000090002 Hnrnpa2b1-202 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
208572 ENSMUST00000069949 Hnrnpa2b1-201 protein_coding Ribo-seq
moderate 4 sORFs_org_Mouse
415139 ENSMUST00000205204 Hnrnpa2b1-213 retained_intron Ribo-seq
moderate 4 sORFs_org_Mouse
194520 ENSMUST00000114459 Hnrnpa2b1-203 protein_coding Ribo-seq
moderate 3 sORFs_org_Mouse
1064462 ENSMUST00000203220 Hnrnpa2b1-204 protein_coding Ribo-seq
moderate 4 sORFs_org_Mouse
526716 75

CTG...

LEE...

CTG Alternative
Downstream
NMD
Overlapping
sORF
Intronic
B_cell, BMDC, E14,
MEF, Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

838341 ENSMUST00000204158 Hnrnpa2b1-209 nonsense_mediated_decay Ribo-seq
4 sORFs_org_Mouse
526117 ENSMUST00000204090 Hnrnpa2b1-208 retained_intron Ribo-seq
strong 1 sORFs_org_Mouse
68488 156

GTG...

VQE...

GTG Intronic
sORF
Alternative
NMD
Overlapping
Upstream
B_cell, Brain, E14,
Liver, MEF, Neutrophil,
NSC, v6-5, 3T3,
R1E, Spleen_B_cell, BMDC,
Testis
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

415139 ENSMUST00000205204 Hnrnpa2b1-213 retained_intron Ribo-seq
weak 10 sORFs_org_Mouse
986414 ENSMUST00000203954 Hnrnpa2b1-207 nonsense_mediated_decay Ribo-seq
1 sORFs_org_Mouse
838341 ENSMUST00000204158 Hnrnpa2b1-209 nonsense_mediated_decay Ribo-seq
1 sORFs_org_Mouse
208572 ENSMUST00000069949 Hnrnpa2b1-201 protein_coding Ribo-seq
2 sORFs_org_Mouse
194520 ENSMUST00000114459 Hnrnpa2b1-203 protein_coding Ribo-seq
4 sORFs_org_Mouse
2965 ENSMUST00000090002 Hnrnpa2b1-202 protein_coding Ribo-seq
2 sORFs_org_Mouse
1687787 114

GTG...

VIV...

GTG Intronic
sORF
MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

415139 ENSMUST00000205204 Hnrnpa2b1-213 retained_intron Ribo-seq
weak 1 sORFs_org_Mouse
70300 42

CTG...

LPW...

CTG Alternative
InCDS
Overlapping
sORF
Intronic
E14, MEF, NSC,
v6-5, B_cell, Brain,
Liver, 3T3, BMDC,
Spleen_B_cell, Testis
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1064462 ENSMUST00000203220 Hnrnpa2b1-204 protein_coding Ribo-seq
moderate 4 sORFs_org_Mouse
415139 ENSMUST00000205204 Hnrnpa2b1-213 retained_intron Ribo-seq
moderate 4 sORFs_org_Mouse
208572 ENSMUST00000069949 Hnrnpa2b1-201 protein_coding Ribo-seq
moderate 3 sORFs_org_Mouse
194520 ENSMUST00000114459 Hnrnpa2b1-203 protein_coding Ribo-seq
moderate 2 sORFs_org_Mouse
2965 ENSMUST00000090002 Hnrnpa2b1-202 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
910087 30

ATC...

ISL...

ATC NMD
sORF
Upstream
Intronic
BMDC, MEF, E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

838341 ENSMUST00000204158 Hnrnpa2b1-209 nonsense_mediated_decay Ribo-seq
weak 2 sORFs_org_Mouse
415139 ENSMUST00000205204 Hnrnpa2b1-213 retained_intron Ribo-seq
weak 1 sORFs_org_Mouse
67598 78

ATG...

MDT...

ATG Alternative
InCDS
NMD
Overlapping
sORF
E14, MEF, BMDC,
Testis
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

838341 ENSMUST00000204158 Hnrnpa2b1-209 nonsense_mediated_decay Ribo-seq
2 sORFs_org_Mouse
1064462 ENSMUST00000203220 Hnrnpa2b1-204 protein_coding Ribo-seq
2 sORFs_org_Mouse
2965 ENSMUST00000090002 Hnrnpa2b1-202 protein_coding Ribo-seq
2 sORFs_org_Mouse
586255 111

TTG...

LGM...

TTG InCDS
Overlapping
sORF
3T3, BMDC, B_cell,
Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

208572 ENSMUST00000069949 Hnrnpa2b1-201 protein_coding Ribo-seq
2 sORFs_org_Mouse
71114 ENSMUST00000204188 Hnrnpa2b1-210 protein_coding Ribo-seq
3 sORFs_org_Mouse
71025 111

GTG...

VGA...

GTG InCDS
Overlapping
sORF
3T3, BMDC, Brain,
E14, MEF, R1E,
Spleen_B_cell, Neutrophil, NSC,
v6-5, B_cell, Testis
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

194520 ENSMUST00000114459 Hnrnpa2b1-203 protein_coding Ribo-seq
7 sORFs_org_Mouse
1064462 ENSMUST00000203220 Hnrnpa2b1-204 protein_coding Ribo-seq
5 sORFs_org_Mouse
2965 ENSMUST00000090002 Hnrnpa2b1-202 protein_coding Ribo-seq
3 sORFs_org_Mouse
71386 255

ATG...

MDT...

ATG InCDS
Overlapping
sORF
Brain, MEF, Neutrophil,
R1E, Spleen_B_cell, BMDC,
Testis, E14, NSC,
v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

194520 ENSMUST00000114459 Hnrnpa2b1-203 protein_coding Ribo-seq
5 sORFs_org_Mouse
2965 ENSMUST00000090002 Hnrnpa2b1-202 protein_coding Ribo-seq
2 sORFs_org_Mouse
1064462 ENSMUST00000203220 Hnrnpa2b1-204 protein_coding Ribo-seq
5 sORFs_org_Mouse
1245024 42

ATT...

ITL...

ATT Intronic
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

415139 ENSMUST00000205204 Hnrnpa2b1-213 retained_intron Ribo-seq
moderate 1 sORFs_org_Mouse
71775 138

GTG...

VED...

GTG InCDS
Overlapping
sORF
BMDC, Brain, E14,
Liver, MEF, R1E,
Spleen_B_cell, 3T3, B_cell,
Testis, Neutrophil, NSC,
v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

194520 ENSMUST00000114459 Hnrnpa2b1-203 protein_coding Ribo-seq
8 sORFs_org_Mouse
2965 ENSMUST00000090002 Hnrnpa2b1-202 protein_coding Ribo-seq
4 sORFs_org_Mouse
1064462 ENSMUST00000203220 Hnrnpa2b1-204 protein_coding Ribo-seq
6 sORFs_org_Mouse
1246225 60

AGG...

RVV...

AGG Intronic
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

415139 ENSMUST00000205204 Hnrnpa2b1-213 retained_intron Ribo-seq
1 sORFs_org_Mouse
875257 81

GTG...

VEL...

GTG Intronic
sORF
InCDS
Overlapping
E14, MEF, Liver
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

415139 ENSMUST00000205204 Hnrnpa2b1-213 retained_intron Ribo-seq
moderate 2 sORFs_org_Mouse
208572 ENSMUST00000069949 Hnrnpa2b1-201 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
906806 36

ATA...

ISH...

ATA Alternative
InCDS
NMD
Overlapping
sORF
Intronic
BMDC, E14, Liver
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

838341 ENSMUST00000204158 Hnrnpa2b1-209 nonsense_mediated_decay Ribo-seq
moderate 1 sORFs_org_Mouse
415139 ENSMUST00000205204 Hnrnpa2b1-213 retained_intron Ribo-seq
moderate 2 sORFs_org_Mouse
586263 138

CTG...

LMD...

CTG InCDS
Overlapping
sORF
B_cell, 3T3, BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

71114 ENSMUST00000204188 Hnrnpa2b1-210 protein_coding Ribo-seq
1 sORFs_org_Mouse
208572 ENSMUST00000069949 Hnrnpa2b1-201 protein_coding Ribo-seq
2 sORFs_org_Mouse
1687681 36

TTG...

LKS...

TTG Intronic
sORF
MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

415139 ENSMUST00000205204 Hnrnpa2b1-213 retained_intron Ribo-seq
moderate 1 sORFs_org_Mouse
71747 123

ATG...

MAT...

ATG InCDS
Overlapping
sORF
BMDC, Brain, E14,
MEF, R1E, Spleen_B_cell,
3T3, B_cell, Testis,
Neutrophil, NSC, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

194520 ENSMUST00000114459 Hnrnpa2b1-203 protein_coding Ribo-seq
6 sORFs_org_Mouse
2965 ENSMUST00000090002 Hnrnpa2b1-202 protein_coding Ribo-seq
4 sORFs_org_Mouse
1064462 ENSMUST00000203220 Hnrnpa2b1-204 protein_coding Ribo-seq
5 sORFs_org_Mouse
908662 54

GTG...

VAM...

GTG Alternative
Downstream
NMD
Overlapping
sORF
BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

838341 ENSMUST00000204158 Hnrnpa2b1-209 nonsense_mediated_decay Ribo-seq
1 sORFs_org_Mouse
415726 75

ATC...

IGL...

ATC Alternative
Overlapping
sORF
Upstream
BMDC, C2C12, MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

71114 ENSMUST00000204188 Hnrnpa2b1-210 protein_coding Ribo-seq
2 sORFs_org_Mouse
208572 ENSMUST00000069949 Hnrnpa2b1-201 protein_coding Ribo-seq
1 sORFs_org_Mouse
1688047 75

TTG...

LDQ...

TTG Intronic
sORF
MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

415139 ENSMUST00000205204 Hnrnpa2b1-213 retained_intron Ribo-seq
strong 1 sORFs_org_Mouse
1249304 102

ACG...

TEV...

ACG InCDS
Overlapping
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

194520 ENSMUST00000114459 Hnrnpa2b1-203 protein_coding Ribo-seq
1 sORFs_org_Mouse
415138 231

ATG...

MVT...

ATG Intronic
sORF
C2C12, MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

415139 ENSMUST00000205204 Hnrnpa2b1-213 retained_intron Ribo-seq
moderate 2 sORFs_org_Mouse
1687606 237

GTG...

VKK...

GTG Intronic
sORF
MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

415139 ENSMUST00000205204 Hnrnpa2b1-213 retained_intron Ribo-seq
1 sORFs_org_Mouse
586702 144

TTG...

LGV...

TTG Alternative
Downstream
Overlapping
sORF
3T3
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

208572 ENSMUST00000069949 Hnrnpa2b1-201 protein_coding Ribo-seq
1 sORFs_org_Mouse
71586 210

ATG...

MEE...

ATG InCDS
Overlapping
sORF
Testis, Brain, MEF,
R1E, Spleen_B_cell, E14,
Neutrophil, NSC, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

2965 ENSMUST00000090002 Hnrnpa2b1-202 protein_coding Ribo-seq
1 sORFs_org_Mouse
194520 ENSMUST00000114459 Hnrnpa2b1-203 protein_coding Ribo-seq
4 sORFs_org_Mouse
1064462 ENSMUST00000203220 Hnrnpa2b1-204 protein_coding Ribo-seq
6 sORFs_org_Mouse
1687708 99

TTG...

LLL...

TTG Intronic
sORF
MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

415139 ENSMUST00000205204 Hnrnpa2b1-213 retained_intron Ribo-seq
weak 1 sORFs_org_Mouse
71169 294

TTG...

LDQ...

TTG InCDS
Overlapping
sORF
BMDC, Testis, Brain,
MEF, R1E, Spleen_B_cell,
E14, Neutrophil, NSC,
v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

2965 ENSMUST00000090002 Hnrnpa2b1-202 protein_coding Ribo-seq
2 sORFs_org_Mouse
194520 ENSMUST00000114459 Hnrnpa2b1-203 protein_coding Ribo-seq
5 sORFs_org_Mouse
1064462 ENSMUST00000203220 Hnrnpa2b1-204 protein_coding Ribo-seq
6 sORFs_org_Mouse
415717 96

ATA...

IGS...

ATA InCDS
Overlapping
sORF
C2C12
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

71114 ENSMUST00000204188 Hnrnpa2b1-210 protein_coding Ribo-seq
1 sORFs_org_Mouse
1247976 57

AAG...

KQK...

AAG Intronic
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

415139 ENSMUST00000205204 Hnrnpa2b1-213 retained_intron Ribo-seq
weak 1 sORFs_org_Mouse
908568 189

TTG...

LEV...

TTG InCDS
NMD
Overlapping
sORF
BMDC, E14, MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

838341 ENSMUST00000204158 Hnrnpa2b1-209 nonsense_mediated_decay Ribo-seq
3 sORFs_org_Mouse
1066537 81

ATG...

MEE...

ATG InCDS
Overlapping
sORF
BMDC, E14, MEF,
Neutrophil, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

194520 ENSMUST00000114459 Hnrnpa2b1-203 protein_coding Ribo-seq
3 sORFs_org_Mouse
1064462 ENSMUST00000203220 Hnrnpa2b1-204 protein_coding Ribo-seq
2 sORFs_org_Mouse
909965 66

AGG...

RRI...

AGG Alternative
InCDS
NMD
Overlapping
sORF
BMDC, E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

838341 ENSMUST00000204158 Hnrnpa2b1-209 nonsense_mediated_decay Ribo-seq
2 sORFs_org_Mouse
1247647 48

ATG...

MPL...

ATG Intronic
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

196599 ENSMUST00000204885 Hnrnpa2b1-211 retained_intron Ribo-seq
moderate 1 sORFs_org_Mouse
910974 99

ATA...

IMG...

ATA InCDS
Overlapping
sORF
BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

71114 ENSMUST00000204188 Hnrnpa2b1-210 protein_coding Ribo-seq
1 sORFs_org_Mouse
71880 129

CTG...

LDM...

CTG InCDS
Overlapping
sORF
E14, MEF, Neutrophil,
NSC, v6-5, BMDC,
Brain, R1E, Spleen_B_cell,
3T3, B_cell, Testis
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1064462 ENSMUST00000203220 Hnrnpa2b1-204 protein_coding Ribo-seq
5 sORFs_org_Mouse
194520 ENSMUST00000114459 Hnrnpa2b1-203 protein_coding Ribo-seq
7 sORFs_org_Mouse
2965 ENSMUST00000090002 Hnrnpa2b1-202 protein_coding Ribo-seq
4 sORFs_org_Mouse
1247112 105

TTG...

LGI...

TTG Intronic
sORF
Alternative
InCDS
NMD
Overlapping
E14, MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

415139 ENSMUST00000205204 Hnrnpa2b1-213 retained_intron Ribo-seq
strong 1 sORFs_org_Mouse
838341 ENSMUST00000204158 Hnrnpa2b1-209 nonsense_mediated_decay Ribo-seq
1 sORFs_org_Mouse
1246645 63

CTG...

LRN...

CTG Intronic
sORF
E14, MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

415139 ENSMUST00000205204 Hnrnpa2b1-213 retained_intron Ribo-seq
moderate 2 sORFs_org_Mouse
415478 39

ATC...

ILQ...

ATC Intronic
sORF
C2C12, E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

415139 ENSMUST00000205204 Hnrnpa2b1-213 retained_intron Ribo-seq
moderate 2 sORFs_org_Mouse
1575863 42

ATC...

IGL...

ATC Alternative
Overlapping
sORF
Upstream
MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

194520 ENSMUST00000114459 Hnrnpa2b1-203 protein_coding Ribo-seq
1 sORFs_org_Mouse
71113 192

GTG...

VVA...

GTG InCDS
Overlapping
sORF
3T3, BMDC, Brain,
MEF, B_cell, Neutrophil,
Spleen_B_cell, Testis, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

208572 ENSMUST00000069949 Hnrnpa2b1-201 protein_coding Ribo-seq
4 sORFs_org_Mouse
71114 ENSMUST00000204188 Hnrnpa2b1-210 protein_coding Ribo-seq
7 sORFs_org_Mouse
1247474 210

AAG...

KED...

AAG Intronic
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

415139 ENSMUST00000205204 Hnrnpa2b1-213 retained_intron Ribo-seq
1 sORFs_org_Mouse
415292 150

AAG...

KEQ...

AAG Intronic
sORF
InCDS
NMD
Overlapping
C2C12, E14, BMDC,
MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

415139 ENSMUST00000205204 Hnrnpa2b1-213 retained_intron Ribo-seq
2 sORFs_org_Mouse
838341 ENSMUST00000204158 Hnrnpa2b1-209 nonsense_mediated_decay Ribo-seq
2 sORFs_org_Mouse
415544 126

ATT...

IGG...

ATT Intronic
sORF
C2C12
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

415139 ENSMUST00000205204 Hnrnpa2b1-213 retained_intron Ribo-seq
1 sORFs_org_Mouse
1687602 51

TTG...

LMT...

TTG Intronic
sORF
MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

415139 ENSMUST00000205204 Hnrnpa2b1-213 retained_intron Ribo-seq
1 sORFs_org_Mouse
415354 135

AAG...

KLF...

AAG Intronic
sORF
InCDS
NMD
Overlapping
C2C12, E14, MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

415139 ENSMUST00000205204 Hnrnpa2b1-213 retained_intron Ribo-seq
2 sORFs_org_Mouse
838341 ENSMUST00000204158 Hnrnpa2b1-209 nonsense_mediated_decay Ribo-seq
1 sORFs_org_Mouse
1243018 48

AGG...

RTW...

AGG Alternative
InCDS
NMD
Overlapping
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

838341 ENSMUST00000204158 Hnrnpa2b1-209 nonsense_mediated_decay Ribo-seq
1 sORFs_org_Mouse
1245372 177

CTG...

LVM...

CTG InCDS
NMD
Overlapping
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

838341 ENSMUST00000204158 Hnrnpa2b1-209 nonsense_mediated_decay Ribo-seq
1 sORFs_org_Mouse
1247772 141

ATA...

IIT...

ATA Intronic
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

415139 ENSMUST00000205204 Hnrnpa2b1-213 retained_intron Ribo-seq
1 sORFs_org_Mouse
1245068 90

TTG...

LRN...

TTG InCDS
NMD
Overlapping
sORF
Intronic
MEF, Brain, E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

838341 ENSMUST00000204158 Hnrnpa2b1-209 nonsense_mediated_decay Ribo-seq
1 sORFs_org_Mouse
415139 ENSMUST00000205204 Hnrnpa2b1-213 retained_intron Ribo-seq
3 sORFs_org_Mouse
415430 84

CTG...

LER...

CTG Intronic
sORF
C2C12, E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

415139 ENSMUST00000205204 Hnrnpa2b1-213 retained_intron Ribo-seq
2 sORFs_org_Mouse
71516 141

GTG...

VVE...

GTG InCDS
Overlapping
sORF
3T3, B_cell, Brain,
Testis, BMDC, Liver,
MEF, R1E, Spleen_B_cell,
E14, Neutrophil, NSC,
v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

2965 ENSMUST00000090002 Hnrnpa2b1-202 protein_coding Ribo-seq
4 sORFs_org_Mouse
194520 ENSMUST00000114459 Hnrnpa2b1-203 protein_coding Ribo-seq
7 sORFs_org_Mouse
1064462 ENSMUST00000203220 Hnrnpa2b1-204 protein_coding Ribo-seq
6 sORFs_org_Mouse
1248300 69

AAG...

KIL...

AAG Intronic
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

415139 ENSMUST00000205204 Hnrnpa2b1-213 retained_intron Ribo-seq
moderate 1 sORFs_org_Mouse
906794 66

AGG...

RKW...

AGG Alternative
Downstream
NMD
Overlapping
sORF
BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

838341 ENSMUST00000204158 Hnrnpa2b1-209 nonsense_mediated_decay Ribo-seq
1 sORFs_org_Mouse
838089 69

TTG...

LGV...

TTG sORF
B_cell, Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

836030 ENSMUST00000203253 Hnrnpa2b1-205 protein_coding Ribo-seq
2 sORFs_org_Mouse
1688011 96

CTG...

LLI...

CTG Intronic
sORF
MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

415139 ENSMUST00000205204 Hnrnpa2b1-213 retained_intron Ribo-seq
weak 1 sORFs_org_Mouse
1688856 66

CTG...

LFL...

CTG Alternative
InCDS
Overlapping
sORF
MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

194520 ENSMUST00000114459 Hnrnpa2b1-203 protein_coding Ribo-seq
1 sORFs_org_Mouse
1669183 66

GTG...

VDV...

GTG Alternative
InCDS
NMD
Overlapping
sORF
MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

838341 ENSMUST00000204158 Hnrnpa2b1-209 nonsense_mediated_decay Ribo-seq
1 sORFs_org_Mouse
1064462 ENSMUST00000203220 Hnrnpa2b1-204 protein_coding Ribo-seq
1 sORFs_org_Mouse
910433 78

AAG...

KWR...

AAG Alternative
Downstream
Overlapping
sORF
BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

71114 ENSMUST00000204188 Hnrnpa2b1-210 protein_coding Ribo-seq
1 sORFs_org_Mouse
1245800 30

AGG...

RGG...

AGG Intronic
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

415139 ENSMUST00000205204 Hnrnpa2b1-213 retained_intron Ribo-seq
moderate 1 sORFs_org_Mouse
1439066 51

CTG...

LRE...

CTG Alternative
Overlapping
sORF
Upstream
Liver, MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

194520 ENSMUST00000114459 Hnrnpa2b1-203 protein_coding Ribo-seq
3 sORFs_org_Mouse
1249175 219

ATA...

IMG...

ATA InCDS
Overlapping
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

194520 ENSMUST00000114459 Hnrnpa2b1-203 protein_coding Ribo-seq
1 sORFs_org_Mouse
415567 45

ATG...

MSN...

ATG Intronic
sORF
Alternative
InCDS
NMD
Overlapping
B_cell, Brain, C2C12,
E14, Liver, MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

415139 ENSMUST00000205204 Hnrnpa2b1-213 retained_intron Ribo-seq
6 sORFs_org_Mouse
838341 ENSMUST00000204158 Hnrnpa2b1-209 nonsense_mediated_decay Ribo-seq
1 sORFs_org_Mouse
208572 ENSMUST00000069949 Hnrnpa2b1-201 protein_coding Ribo-seq
1 sORFs_org_Mouse
1248076 198

GTG...

VAI...

GTG InCDS
NMD
Overlapping
sORF
E14, MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

838341 ENSMUST00000204158 Hnrnpa2b1-209 nonsense_mediated_decay Ribo-seq
2 sORFs_org_Mouse
71731 189

GTG...

VAV...

GTG InCDS
Overlapping
sORF
B_cell, MEF, Neutrophil,
Spleen_B_cell, Testis, v6-5,
3T3, BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

71114 ENSMUST00000204188 Hnrnpa2b1-210 protein_coding Ribo-seq
7 sORFs_org_Mouse
208572 ENSMUST00000069949 Hnrnpa2b1-201 protein_coding Ribo-seq
3 sORFs_org_Mouse
585411 105

ATG...

MAI...

ATG InCDS
Overlapping
sORF
B_cell, 3T3, BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

71114 ENSMUST00000204188 Hnrnpa2b1-210 protein_coding Ribo-seq
1 sORFs_org_Mouse
208572 ENSMUST00000069949 Hnrnpa2b1-201 protein_coding Ribo-seq
2 sORFs_org_Mouse
71687 210

TTG...

LVL...

TTG InCDS
Overlapping
sORF
3T3, BMDC, Brain,
MEF, B_cell, E14,
Neutrophil, R1E, Spleen_B_cell,
Testis, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

208572 ENSMUST00000069949 Hnrnpa2b1-201 protein_coding Ribo-seq
4 sORFs_org_Mouse
71114 ENSMUST00000204188 Hnrnpa2b1-210 protein_coding Ribo-seq
10 sORFs_org_Mouse
1687392 48

ATG...

MTM...

ATG Intronic
sORF
MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

415139 ENSMUST00000205204 Hnrnpa2b1-213 retained_intron Ribo-seq
1 sORFs_org_Mouse
585047 153

GTG...

VET...

GTG Alternative
Downstream
Overlapping
sORF
3T3
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

208572 ENSMUST00000069949 Hnrnpa2b1-201 protein_coding Ribo-seq
1 sORFs_org_Mouse
1687803 105

TTG...

LFL...

TTG Intronic
sORF
MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

415139 ENSMUST00000205204 Hnrnpa2b1-213 retained_intron Ribo-seq
moderate 1 sORFs_org_Mouse
1687408 84

GTG...

VAI...

GTG Intronic
sORF
MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

415139 ENSMUST00000205204 Hnrnpa2b1-213 retained_intron Ribo-seq
strong 1 sORFs_org_Mouse
1246248 228

CTG...

LFV...

CTG Intronic
sORF
E14, MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

415139 ENSMUST00000205204 Hnrnpa2b1-213 retained_intron Ribo-seq
2 sORFs_org_Mouse
839672 177

GTG...

VEK...

GTG InCDS
Overlapping
sORF
B_cell, Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

71114 ENSMUST00000204188 Hnrnpa2b1-210 protein_coding Ribo-seq
2 sORFs_org_Mouse

Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5