Metam
ORF

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Gene

Gene

ID CARD

ID

NCBI:52036

Aliases

4930528G08Rik
9130026N02Rik, D19Bwg1430e, D19Ertd703e
ENSMUSG00000024908, MGI:1921807, mKIAA1558
NCBI:52036, OFF:Ppp6r3, Pp6r3
Ppcs3, Ppp6r3, Pptcs3
Sapl, Saps3

Chromosome

19

Transcripts

102 ORFs
3 known transcripts
181 ORF to known transcript associations

MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

ORFs

Display all the transcripts related to the entry.

411584 ENSMUST00000025846 Ppp6r3-201 protein_coding
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

806638 99

GTG ...

VQL ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell
401633 33

CTG ...

LMV ...

Ribo-seq
CTG

weak

4 sORFs_org_Mouse
    sORF
    Upstream
3T3, B_cell, MEF,
Spleen_B_cell
489438 51

ATG ...

MQK ...

Ribo-seq
ATG

moderate

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Spleen_B_cell
407941 42

ATG ...

MFY ...

Ribo-seq
ATG

moderate

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, MEF
720540 99

GTG ...

VKK ...

Ribo-seq
GTG

moderate

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, Brain
719831 48

CTG ...

LFH ...

Ribo-seq
CTG

weak

1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
3T3
401906 48

CTG ...

LKE ...

Ribo-seq
CTG

moderate

2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
B_cell, MEF
1869118 36

ATG ...

MPH ...

Ribo-seq
ATG

weak

1 Johnstone2016
    InCDS
    Overlapping
    sORF
Glioma, Liver, MEF,
MESC
1721830 33

ATG ...

MID ...

Ribo-seq
ATG

weak

2 sORFs_org_Mouse
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
Glioma, Liver, MEF,
MESC
963365 75

AGG ...

RSH ...

Ribo-seq
AGG

1 sORFs_org_Mouse
    Overlapping
    sORF
    Upstream
BMDC
723927 36

GTG ...

VQT ...

Ribo-seq
GTG

moderate

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Brain
726674 231

TTG ...

LKH ...

Ribo-seq
TTG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell
961053 33

TTG ...

LHC ...

Ribo-seq
TTG

moderate

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain
718392 87

TTG ...

LLS ...

Ribo-seq
TTG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
805741 30

ATG ...

MVT ...

Ribo-seq
ATG

strong

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
B_cell
407029 51

ATG ...

MRR ...

Ribo-seq
ATG

weak

4 sORFs_org_Mouse
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, Glioma,
Liver, MEF, MESC
41685 30

ATG ...

MNS ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain
1157912 36

ATG ...

MRR ...

Ribo-seq
ATG

weak

2 sORFs_org_Mouse
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
Glioma, Liver, MEF,
MESC
42296 30

ATG ...

MVS ...

Ribo-seq
ATG

moderate

6 sORFs_org_Mouse
Johnstone2016
    sORF
    Upstream
3T3, B_cell, C2C12,
Glioma, Liver, MEF,
MESC, Spleen_B_cell
806332 81

TTG ...

LTS ...

Ribo-seq
TTG

2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
B_cell, Brain
719766 54

TTG ...

LSS ...

Ribo-seq
TTG

weak

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
804486 30

CTG ...

LEH ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell
406861 48

ATG ...

MAQ ...

Ribo-seq
ATG

strong

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
719732 33

GTG ...

VSC ...

Ribo-seq
GTG

weak

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
722973 30

GTG ...

VHS ...

Ribo-seq
GTG

weak

2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, Brain
963344 54

ATT ...

ISF ...

Ribo-seq
ATT

1 sORFs_org_Mouse
    Overlapping
    sORF
    Upstream
BMDC
724951 192

ATG ...

MAA ...

Ribo-seq
ATG

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, Brain
409763 36

ATG ...

MNS ...

Ribo-seq
ATG

1 Johnstone2016
    InCDS
    Overlapping
    sORF
Glioma, Liver, MEF,
MESC
722119 78

ATG ...

MSG ...

Ribo-seq
ATG

weak

2 sORFs_org_Mouse
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Glioma, Liver,
MEF, MESC
41907 42

TTG ...

LDL ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain
491247 69

ATG ...

MRR ...

Ribo-seq
ATG

3 sORFs_org_Mouse
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Glioma, Liver,
MEF, MESC, Spleen_B_cell
411765 99

ATA ...

IAV ...

Ribo-seq
ATA

1 sORFs_org_Mouse
    sORF
    Upstream
C2C12
806364 36

ATG ...

MGK ...

Ribo-seq
ATG

moderate

3 sORFs_org_Mouse
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
B_cell, Glioma, Liver,
MEF, MESC
724573 81

CTG ...

LKK ...

Ribo-seq
CTG

moderate

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, Brain
725349 111

CTG ...

LQS ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell
487304 66

ATG ...

MLL ...

Ribo-seq
ATG

moderate

4 sORFs_org_Mouse
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, Glioma,
Liver, MEF, MESC,
Spleen_B_cell
724632 51

TTG ...

LIG ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
407654 33

TTG ...

LSL ...

Ribo-seq
TTG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
92041 69

TTG ...

LKP ...

Ribo-seq
TTG

2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, Spleen_B_cell
404634 51

ATG ...

MGY ...

Ribo-seq
ATG

moderate

2 sORFs_org_Mouse
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
Glioma, Liver, MEF,
MESC, Spleen_B_cell
403755 57

ATG ...

MSG ...

Ribo-seq
ATG

moderate

3 sORFs_org_Mouse
Johnstone2016
    InCDS
    Overlapping
    sORF
3T3, B_cell, Glioma,
Liver, MEF, MESC
402213 45

TTG ...

LGA ...

Ribo-seq
TTG

3 sORFs_org_Mouse
    sORF
    Upstream
3T3, B_cell, MEF
408895 75

GTG ...

VFL ...

Ribo-seq
GTG

2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, Spleen_B_cell
1544919 60

ATG ...

MRS ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain
488149 39

TTG ...

LCT ...

Ribo-seq
TTG

moderate

2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, Spleen_B_cell
489907 72

TTG ...

LQR ...

Ribo-seq
TTG

weak

3 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, Brain, Spleen_B_cell
1159822 45

ATG ...

MKS ...

Ribo-seq
ATG

weak

2 sORFs_org_Mouse
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
Glioma, Liver, MEF,
MESC
488489 69

GTG ...

VFL ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Spleen_B_cell
725625 180

ATG ...

MKR ...

Ribo-seq
ATG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell
719010 48

TTG ...

LSP ...

Ribo-seq
TTG

weak

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, Brain
409453 81

TTG ...

LKP ...

Ribo-seq
TTG

3 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
B_cell, MEF, Spleen_B_cell
1545600 33

CTG ...

LLS ...

Ribo-seq
CTG

weak

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, MEF
725917 183

CTG ...

LMK ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell
721151 114

CTG ...

LAV ...

Ribo-seq
CTG

strong

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, Brain
805240 72

TTG ...

LAS ...

Ribo-seq
TTG

2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
B_cell, Brain
725550 66

ATG ...

MSH ...

Ribo-seq
ATG

2 sORFs_org_Mouse
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Glioma, Liver,
MEF, MESC
406460 57

ATG ...

MQR ...

Ribo-seq
ATG

moderate

2 sORFs_org_Mouse
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Glioma, Liver,
MEF, MESC
490152 63

CTG ...

LLA ...

Ribo-seq
CTG

moderate

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, Spleen_B_cell
725985 294

TTG ...

LIG ...

Ribo-seq
TTG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell
720747 69

ATG ...

MGP ...

Ribo-seq
ATG

strong

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Brain
401733 63

TTG ...

LRM ...

Ribo-seq
TTG

weak

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
726015 240

TTG ...

LPC ...

Ribo-seq
TTG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell
726461 198

TTG ...

LMM ...

Ribo-seq
TTG

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, Brain
720004 36

CTG ...

LIK ...

Ribo-seq
CTG

weak

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
411583 39

ATG ...

MGK ...

Ribo-seq
ATG

strong

4 sORFs_org_Mouse
Johnstone2016
    Alternative
    sORF
    Upstream
3T3, B_cell, C2C12,
Glioma, Liver, MEF,
MESC
1157828 39

TTG ...

LKP ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
726833 150

TTG ...

LHL ...

Ribo-seq
TTG

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, Brain
404730 42

CTG ...

LWK ...

Ribo-seq
CTG

weak

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
719407 96

GTG ...

VRK ...

Ribo-seq
GTG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell
726882 195

ATG ...

MMA ...

Ribo-seq
ATG

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, Brain
41686 ENSMUST00000172362 Ppp6r3-203 protein_coding
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

961053 33

TTG ...

LHC ...

Ribo-seq
TTG

moderate

2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC, v6-5
1201245 96

AAG ...

KKV ...

Ribo-seq
AAG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
724632 51

TTG ...

LIG ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
724573 81

CTG ...

LKK ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
407654 33

TTG ...

LSL ...

Ribo-seq
TTG

moderate

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
R1E, v6-5
403755 57

ATG ...

MSG ...

Ribo-seq
ATG

moderate

8 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14, Liver, MEF,
Neutrophil, NSC, R1E,
v6-5
722119 78

ATG ...

MSG ...

Ribo-seq
ATG

weak

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, R1E, v6-5
409453 81

TTG ...

LKP ...

Ribo-seq
TTG

3 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
MEF, R1E, v6-5
1202044 75

AAG ...

KKM ...

Ribo-seq
AAG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
1202988 45

AGG ...

RTT ...

Ribo-seq
AGG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
720747 69

ATG ...

MGP ...

Ribo-seq
ATG

strong

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
721151 114

CTG ...

LAV ...

Ribo-seq
CTG

strong

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, MEF
1203376 45

AAG ...

KRQ ...

Ribo-seq
AAG

weak

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
725917 183

CTG ...

LMK ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
961102 156

CTG ...

LHE ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, E14
41907 42

TTG ...

LDL ...

Ribo-seq
TTG

4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Liver, R1E, Testis,
v6-5
722973 30

GTG ...

VHS ...

Ribo-seq
GTG

weak

2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14, v6-5
1203192 57

ATC ...

IRG ...

Ribo-seq
ATC

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
1159822 45

ATG ...

MKS ...

Ribo-seq
ATG

weak

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, NSC, v6-5
1200830 57

AAG ...

KTC ...

Ribo-seq
AAG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
1362964 60

CTG ...

LGF ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
726882 195

ATG ...

MMA ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
1200698 48

ATC ...

IGC ...

Ribo-seq
ATC

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
723927 36

GTG ...

VQT ...

Ribo-seq
GTG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
726833 150

TTG ...

LHL ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
1204704 171

ATA ...

ISG ...

Ribo-seq
ATA

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
407029 51

ATG ...

MRR ...

Ribo-seq
ATG

weak

4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, Neutrophil, v6-5
408895 75

GTG ...

VFL ...

Ribo-seq
GTG

3 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Liver, R1E, v6-5
491247 69

ATG ...

MRR ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
NSC
489438 51

ATG ...

MQK ...

Ribo-seq
ATG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
1204389 291

ATC ...

IGC ...

Ribo-seq
ATC

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
718392 87

TTG ...

LLS ...

Ribo-seq
TTG

moderate

4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, MEF, R1E,
v6-5
406861 48

ATG ...

MAQ ...

Ribo-seq
ATG

strong

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, v6-5
1868677 66

CTG ...

LLD ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    sORF
R1E
719766 54

TTG ...

LSS ...

Ribo-seq
TTG

weak

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, v6-5
1869118 36

ATG ...

MPH ...

Ribo-seq
ATG

weak

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
R1E
42296 30

ATG ...

MVS ...

Ribo-seq
ATG

moderate

10 sORFs_org_Mouse
    sORF
    Upstream
BMDC, E14, Liver,
MEF, NSC, R1E,
Testis, v6-5
725985 294

TTG ...

LIG ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
401733 63

TTG ...

LRM ...

Ribo-seq
TTG

weak

4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, MEF, v6-5
1157828 39

TTG ...

LKP ...

Ribo-seq
TTG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, v6-5
1203078 48

AAG ...

KPA ...

Ribo-seq
AAG

weak

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
1157912 36

ATG ...

MRR ...

Ribo-seq
ATG

weak

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, v6-5
488489 69

GTG ...

VFL ...

Ribo-seq
GTG

4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, Liver, R1E,
v6-5
726015 240

TTG ...

LPC ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
43008 63

TTG ...

LKP ...

Ribo-seq
TTG

4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Liver, R1E, Testis,
v6-5
1204987 126

ACG ...

TPR ...

Ribo-seq
ACG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
401906 48

CTG ...

LKE ...

Ribo-seq
CTG

moderate

2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
MEF, R1E
806364 36

ATG ...

MGK ...

Ribo-seq
ATG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
1545600 33

CTG ...

LLS ...

Ribo-seq
CTG

weak

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
402213 45

TTG ...

LGA ...

Ribo-seq
TTG

2 sORFs_org_Mouse
    sORF
Neutrophil, R1E
1157673 39

CTG ...

LPP ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
v6-5
41685 30

ATG ...

MNS ...

Ribo-seq
ATG

4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Liver, R1E, Testis,
v6-5
409763 36

ATG ...

MNS ...

Ribo-seq
ATG

3 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Liver, R1E, v6-5
726461 198

TTG ...

LMM ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
407941 42

ATG ...

MFY ...

Ribo-seq
ATG

moderate

6 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, MEF, Neutrophil,
R1E, v6-5
725349 111

CTG ...

LQS ...

Ribo-seq
CTG

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, NSC, v6-5
1201513 90

AAG ...

KKN ...

Ribo-seq
AAG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
488149 39

TTG ...

LCT ...

Ribo-seq
TTG

moderate

4 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC, E14, MEF,
v6-5
410517 48

TTG ...

LDL ...

Ribo-seq
TTG

3 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Liver, R1E, v6-5
1201294 39

ACG ...

TAW ...

Ribo-seq
ACG

strong

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
1202244 30

AAG ...

KRM ...

Ribo-seq
AAG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
1204458 162

AGG ...

RRS ...

Ribo-seq
AGG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
489907 72

TTG ...

LQR ...

Ribo-seq
TTG

weak

4 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14, Liver, NSC,
v6-5
719407 96

GTG ...

VRK ...

Ribo-seq
GTG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
NSC, v6-5
92041 69

TTG ...

LKP ...

Ribo-seq
TTG

3 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Liver, R1E, v6-5
726674 231

TTG ...

LKH ...

Ribo-seq
TTG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, NSC
724951 192

ATG ...

MAA ...

Ribo-seq
ATG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, MEF
720540 99

GTG ...

VKK ...

Ribo-seq
GTG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
1201451 36

AAG ...

KPG ...

Ribo-seq
AAG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
1205358 243

ATA ...

ILP ...

Ribo-seq
ATA

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
805741 30

ATG ...

MVT ...

Ribo-seq
ATG

strong

2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14, R1E
1204170 45

ATC ...

IGH ...

Ribo-seq
ATC

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
401633 33

CTG ...

LMV ...

Ribo-seq
CTG

weak

9 sORFs_org_Mouse
    sORF
    Upstream
BMDC, E14, Liver,
MEF, Neutrophil, NSC,
R1E, v6-5
1202825 48

AGG ...

RQY ...

Ribo-seq
AGG

moderate

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
490152 63

CTG ...

LLA ...

Ribo-seq
CTG

moderate

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, v6-5
725625 180

ATG ...

MKR ...

Ribo-seq
ATG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, MEF
404634 51

ATG ...

MGY ...

Ribo-seq
ATG

moderate

6 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, Liver, MEF,
NSC, v6-5
1205083 228

AAG ...

KHV ...

Ribo-seq
AAG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
487304 66

ATG ...

MLL ...

Ribo-seq
ATG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
406460 57

ATG ...

MQR ...

Ribo-seq
ATG

moderate

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, v6-5
720004 36

CTG ...

LIK ...

Ribo-seq
CTG

weak

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, v6-5
963700 78

AAG ...

KIW ...

Ribo-seq
AAG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
404730 42

CTG ...

LWK ...

Ribo-seq
CTG

weak

4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, MEF, R1E,
v6-5
92042 ENSMUST00000113997 Ppp6r3-202 protein_coding
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

41685 30

ATG ...

MNS ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain
402213 45

TTG ...

LGA ...

Ribo-seq
TTG

strong

2 sORFs_org_Mouse
    sORF
    Upstream
Brain
408895 75

GTG ...

VFL ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain
404634 51

ATG ...

MGY ...

Ribo-seq
ATG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain
43008 63

TTG ...

LKP ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain
401906 48

CTG ...

LKE ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain
725752 84

ATG ...

MKL ...

Ribo-seq
ATG

3 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, E14, v6-5
1204392 99

ATT ...

IHP ...

Ribo-seq
ATT

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
403755 57

ATG ...

MSG ...

Ribo-seq
ATG

moderate

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain
407941 42

ATG ...

MFY ...

Ribo-seq
ATG

moderate

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, MEF
727103 87

ATG ...

MMK ...

Ribo-seq
ATG

3 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, E14, v6-5
41907 42

TTG ...

LDL ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain
410517 48

TTG ...

LDL ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain
406861 48

ATG ...

MAQ ...

Ribo-seq
ATG

strong

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain
42296 30

ATG ...

MVS ...

Ribo-seq
ATG

moderate

2 sORFs_org_Mouse
    sORF
    Upstream
Brain
726927 78

TTG ...

LTL ...

Ribo-seq
TTG

3 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, E14, v6-5
727059 90

GTG ...

VMM ...

Ribo-seq
GTG

3 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, E14, v6-5
411583 39

ATG ...

MGK ...

Ribo-seq
ATG

strong

1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
Brain
407029 51

ATG ...

MRR ...

Ribo-seq
ATG

weak

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, MEF
401733 63

TTG ...

LRM ...

Ribo-seq
TTG

weak

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain
401633 33

CTG ...

LMV ...

Ribo-seq
CTG

weak

2 sORFs_org_Mouse
    sORF
    Upstream
Brain
92041 69

TTG ...

LKP ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain
409763 36

ATG ...

MNS ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain
404730 42

CTG ...

LWK ...

Ribo-seq
CTG

weak

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain
406460 57

ATG ...

MQR ...

Ribo-seq
ATG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain
721151 114

CTG ...

LAV ...

Ribo-seq
CTG

strong

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
409453 81

TTG ...

LKP ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain
407654 33

TTG ...

LSL ...

Ribo-seq
TTG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain

ORFs

102 ORFs
3 known transcripts
181 ORF to known transcript associations

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF Length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Start codon

The start codon sequence of the ORF.

ORF annotations

A comma-separated list of all the annotations computed by our algorithm for the ORF. This list includes the annotations computed for the ORF for all transcripts. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of all the cell types in which the ORF has already been identified.

Transcripts

Display all the transcripts related to the entry.

806638 99

GTG...

VQL...

GTG Alternative
InCDS
Overlapping
sORF
B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

411584 ENSMUST00000025846 Ppp6r3-201 protein_coding Ribo-seq
1 sORFs_org_Mouse
961053 33

TTG...

LHC...

TTG InCDS
Overlapping
sORF
BMDC, v6-5, Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

41686 ENSMUST00000172362 Ppp6r3-203 protein_coding Ribo-seq
moderate 2 sORFs_org_Mouse
411584 ENSMUST00000025846 Ppp6r3-201 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
41685 30

ATG...

MNS...

ATG Alternative
InCDS
Overlapping
sORF
Brain, Liver, R1E,
Testis, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

92042 ENSMUST00000113997 Ppp6r3-202 protein_coding Ribo-seq
1 sORFs_org_Mouse
411584 ENSMUST00000025846 Ppp6r3-201 protein_coding Ribo-seq
1 sORFs_org_Mouse
41686 ENSMUST00000172362 Ppp6r3-203 protein_coding Ribo-seq
4 sORFs_org_Mouse
402213 45

TTG...

LGA...

TTG sORF
Upstream
Brain, 3T3, B_cell,
MEF, Neutrophil, R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

92042 ENSMUST00000113997 Ppp6r3-202 protein_coding Ribo-seq
strong 2 sORFs_org_Mouse
411584 ENSMUST00000025846 Ppp6r3-201 protein_coding Ribo-seq
3 sORFs_org_Mouse
41686 ENSMUST00000172362 Ppp6r3-203 protein_coding Ribo-seq
2 sORFs_org_Mouse
408895 75

GTG...

VFL...

GTG InCDS
Overlapping
sORF
Brain, Liver, R1E,
v6-5, 3T3, Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

92042 ENSMUST00000113997 Ppp6r3-202 protein_coding Ribo-seq
1 sORFs_org_Mouse
41686 ENSMUST00000172362 Ppp6r3-203 protein_coding Ribo-seq
3 sORFs_org_Mouse
411584 ENSMUST00000025846 Ppp6r3-201 protein_coding Ribo-seq
2 sORFs_org_Mouse
401633 33

CTG...

LMV...

CTG sORF
Upstream
3T3, B_cell, MEF,
Spleen_B_cell, Brain, BMDC,
E14, Liver, Neutrophil,
NSC, R1E, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

411584 ENSMUST00000025846 Ppp6r3-201 protein_coding Ribo-seq
weak 4 sORFs_org_Mouse
92042 ENSMUST00000113997 Ppp6r3-202 protein_coding Ribo-seq
weak 2 sORFs_org_Mouse
41686 ENSMUST00000172362 Ppp6r3-203 protein_coding Ribo-seq
weak 9 sORFs_org_Mouse
1201245 96

AAG...

KKV...

AAG Alternative
InCDS
Overlapping
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

41686 ENSMUST00000172362 Ppp6r3-203 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
489438 51

ATG...

MQK...

ATG Alternative
InCDS
Overlapping
sORF
3T3, Spleen_B_cell, E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

411584 ENSMUST00000025846 Ppp6r3-201 protein_coding Ribo-seq
moderate 2 sORFs_org_Mouse
41686 ENSMUST00000172362 Ppp6r3-203 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
407941 42

ATG...

MFY...

ATG Alternative
InCDS
Overlapping
sORF
3T3, B_cell, MEF,
Brain, E14, Neutrophil,
R1E, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

411584 ENSMUST00000025846 Ppp6r3-201 protein_coding Ribo-seq
moderate 3 sORFs_org_Mouse
92042 ENSMUST00000113997 Ppp6r3-202 protein_coding Ribo-seq
moderate 2 sORFs_org_Mouse
41686 ENSMUST00000172362 Ppp6r3-203 protein_coding Ribo-seq
moderate 6 sORFs_org_Mouse
404634 51

ATG...

MGY...

ATG Alternative
InCDS
Overlapping
sORF
Brain, Glioma, Liver,
MEF, MESC, Spleen_B_cell,
E14, NSC, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

92042 ENSMUST00000113997 Ppp6r3-202 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
411584 ENSMUST00000025846 Ppp6r3-201 protein_coding Ribo-seq
moderate 2 sORFs_org_Mouse
Johnstone2016
41686 ENSMUST00000172362 Ppp6r3-203 protein_coding Ribo-seq
moderate 6 sORFs_org_Mouse
724632 51

TTG...

LIG...

TTG Alternative
InCDS
Overlapping
sORF
MEF, 3T3
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

41686 ENSMUST00000172362 Ppp6r3-203 protein_coding Ribo-seq
1 sORFs_org_Mouse
411584 ENSMUST00000025846 Ppp6r3-201 protein_coding Ribo-seq
1 sORFs_org_Mouse
720540 99

GTG...

VKK...

GTG Alternative
InCDS
Overlapping
sORF
3T3, B_cell, Brain,
MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

411584 ENSMUST00000025846 Ppp6r3-201 protein_coding Ribo-seq
moderate 3 sORFs_org_Mouse
41686 ENSMUST00000172362 Ppp6r3-203 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
724573 81

CTG...

LKK...

CTG Alternative
InCDS
Overlapping
sORF
E14, 3T3, B_cell,
Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

41686 ENSMUST00000172362 Ppp6r3-203 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
411584 ENSMUST00000025846 Ppp6r3-201 protein_coding Ribo-seq
moderate 3 sORFs_org_Mouse
719831 48

CTG...

LFH...

CTG Alternative
sORF
Upstream
3T3
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

411584 ENSMUST00000025846 Ppp6r3-201 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
407654 33

TTG...

LSL...

TTG Alternative
InCDS
Overlapping
sORF
R1E, v6-5, 3T3,
Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

41686 ENSMUST00000172362 Ppp6r3-203 protein_coding Ribo-seq
moderate 2 sORFs_org_Mouse
411584 ENSMUST00000025846 Ppp6r3-201 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
92042 ENSMUST00000113997 Ppp6r3-202 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
43008 63

TTG...

LKP...

TTG Alternative
InCDS
Overlapping
sORF
Brain, Liver, R1E,
Testis, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

92042 ENSMUST00000113997 Ppp6r3-202 protein_coding Ribo-seq
1 sORFs_org_Mouse
41686 ENSMUST00000172362 Ppp6r3-203 protein_coding Ribo-seq
4 sORFs_org_Mouse
401906 48

CTG...

LKE...

CTG InCDS
Overlapping
sORF
B_cell, MEF, Brain,
R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

411584 ENSMUST00000025846 Ppp6r3-201 protein_coding Ribo-seq
moderate 2 sORFs_org_Mouse
92042 ENSMUST00000113997 Ppp6r3-202 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
41686 ENSMUST00000172362 Ppp6r3-203 protein_coding Ribo-seq
moderate 2 sORFs_org_Mouse
1869118 36

ATG...

MPH...

ATG InCDS
Overlapping
sORF
Glioma, Liver, MEF,
MESC, R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

411584 ENSMUST00000025846 Ppp6r3-201 protein_coding Ribo-seq
weak 1 Johnstone2016
41686 ENSMUST00000172362 Ppp6r3-203 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
1721830 33

ATG...

MID...

ATG Alternative
InCDS
Overlapping
sORF
Glioma, Liver, MEF,
MESC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

411584 ENSMUST00000025846 Ppp6r3-201 protein_coding Ribo-seq
weak 2 sORFs_org_Mouse
Johnstone2016
963365 75

AGG...

RSH...

AGG Overlapping
sORF
Upstream
BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

411584 ENSMUST00000025846 Ppp6r3-201 protein_coding Ribo-seq
1 sORFs_org_Mouse
403755 57

ATG...

MSG...

ATG InCDS
Overlapping
sORF
E14, Liver, MEF,
Neutrophil, NSC, R1E,
v6-5, Brain, 3T3,
B_cell, Glioma, MESC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

41686 ENSMUST00000172362 Ppp6r3-203 protein_coding Ribo-seq
moderate 8 sORFs_org_Mouse
92042 ENSMUST00000113997 Ppp6r3-202 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
411584 ENSMUST00000025846 Ppp6r3-201 protein_coding Ribo-seq
moderate 3 sORFs_org_Mouse
Johnstone2016
725752 84

ATG...

MKL...

ATG InCDS
Overlapping
sORF
3T3, E14, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

92042 ENSMUST00000113997 Ppp6r3-202 protein_coding Ribo-seq
3 sORFs_org_Mouse
722119 78

ATG...

MSG...

ATG Alternative
InCDS
Overlapping
sORF
E14, R1E, v6-5,
3T3, Glioma, Liver,
MEF, MESC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

41686 ENSMUST00000172362 Ppp6r3-203 protein_coding Ribo-seq
weak 3 sORFs_org_Mouse
411584 ENSMUST00000025846 Ppp6r3-201 protein_coding Ribo-seq
weak 2 sORFs_org_Mouse
Johnstone2016
409453 81

TTG...

LKP...

TTG InCDS
Overlapping
sORF
MEF, R1E, v6-5,
B_cell, Spleen_B_cell, Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

41686 ENSMUST00000172362 Ppp6r3-203 protein_coding Ribo-seq
3 sORFs_org_Mouse
411584 ENSMUST00000025846 Ppp6r3-201 protein_coding Ribo-seq
3 sORFs_org_Mouse
92042 ENSMUST00000113997 Ppp6r3-202 protein_coding Ribo-seq
1 sORFs_org_Mouse
723927 36

GTG...

VQT...

GTG Alternative
InCDS
Overlapping
sORF
3T3, Brain, MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

411584 ENSMUST00000025846 Ppp6r3-201 protein_coding Ribo-seq
moderate 2 sORFs_org_Mouse
41686 ENSMUST00000172362 Ppp6r3-203 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
1202044 75

AAG...

KKM...

AAG Alternative
InCDS
Overlapping
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

41686 ENSMUST00000172362 Ppp6r3-203 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
726674 231

TTG...

LKH...

TTG Alternative
InCDS
Overlapping
sORF
3T3, B_cell, MEF,
NSC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

411584 ENSMUST00000025846 Ppp6r3-201 protein_coding Ribo-seq
2 sORFs_org_Mouse
41686 ENSMUST00000172362 Ppp6r3-203 protein_coding Ribo-seq
2 sORFs_org_Mouse
1202988 45

AGG...

RTT...

AGG Alternative
InCDS
Overlapping
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

41686 ENSMUST00000172362 Ppp6r3-203 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
720747 69

ATG...

MGP...

ATG Alternative
InCDS
Overlapping
sORF
E14, 3T3, Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

41686 ENSMUST00000172362 Ppp6r3-203 protein_coding Ribo-seq
strong 1 sORFs_org_Mouse
411584 ENSMUST00000025846 Ppp6r3-201 protein_coding Ribo-seq
strong 2 sORFs_org_Mouse
1204392 99

ATT...

IHP...

ATT InCDS
Overlapping
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

92042 ENSMUST00000113997 Ppp6r3-202 protein_coding Ribo-seq
1 sORFs_org_Mouse
721151 114

CTG...

LAV...

CTG Alternative
InCDS
Overlapping
sORF
E14, MEF, 3T3,
B_cell, Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

41686 ENSMUST00000172362 Ppp6r3-203 protein_coding Ribo-seq
strong 2 sORFs_org_Mouse
411584 ENSMUST00000025846 Ppp6r3-201 protein_coding Ribo-seq
strong 3 sORFs_org_Mouse
92042 ENSMUST00000113997 Ppp6r3-202 protein_coding Ribo-seq
strong 1 sORFs_org_Mouse
1203376 45

AAG...

KRQ...

AAG Alternative
InCDS
Overlapping
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

41686 ENSMUST00000172362 Ppp6r3-203 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
718392 87

TTG...

LLS...

TTG Alternative
InCDS
Overlapping
sORF
3T3, E14, MEF,
R1E, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

411584 ENSMUST00000025846 Ppp6r3-201 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
41686 ENSMUST00000172362 Ppp6r3-203 protein_coding Ribo-seq
moderate 4 sORFs_org_Mouse
725917 183

CTG...

LMK...

CTG Alternative
InCDS
Overlapping
sORF
MEF, 3T3, B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

41686 ENSMUST00000172362 Ppp6r3-203 protein_coding Ribo-seq
1 sORFs_org_Mouse
411584 ENSMUST00000025846 Ppp6r3-201 protein_coding Ribo-seq
2 sORFs_org_Mouse
961102 156

CTG...

LHE...

CTG Alternative
InCDS
Overlapping
sORF
BMDC, E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

41686 ENSMUST00000172362 Ppp6r3-203 protein_coding Ribo-seq
2 sORFs_org_Mouse
805741 30

ATG...

MVT...

ATG InCDS
Overlapping
sORF
B_cell, E14, R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

411584 ENSMUST00000025846 Ppp6r3-201 protein_coding Ribo-seq
strong 1 sORFs_org_Mouse
41686 ENSMUST00000172362 Ppp6r3-203 protein_coding Ribo-seq
strong 2 sORFs_org_Mouse
41907 42

TTG...

LDL...

TTG Alternative
InCDS
Overlapping
sORF
Liver, R1E, Testis,
v6-5, Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

41686 ENSMUST00000172362 Ppp6r3-203 protein_coding Ribo-seq
4 sORFs_org_Mouse
92042 ENSMUST00000113997 Ppp6r3-202 protein_coding Ribo-seq
1 sORFs_org_Mouse
411584 ENSMUST00000025846 Ppp6r3-201 protein_coding Ribo-seq
1 sORFs_org_Mouse
722973 30

GTG...

VHS...

GTG InCDS
Overlapping
sORF
E14, v6-5, 3T3,
Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

41686 ENSMUST00000172362 Ppp6r3-203 protein_coding Ribo-seq
weak 2 sORFs_org_Mouse
411584 ENSMUST00000025846 Ppp6r3-201 protein_coding Ribo-seq
weak 2 sORFs_org_Mouse
407029 51

ATG...

MRR...

ATG Alternative
InCDS
Overlapping
sORF
3T3, B_cell, Glioma,
Liver, MEF, MESC,
Neutrophil, v6-5, Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

411584 ENSMUST00000025846 Ppp6r3-201 protein_coding Ribo-seq
weak 4 sORFs_org_Mouse
Johnstone2016
41686 ENSMUST00000172362 Ppp6r3-203 protein_coding Ribo-seq
weak 4 sORFs_org_Mouse
92042 ENSMUST00000113997 Ppp6r3-202 protein_coding Ribo-seq
weak 2 sORFs_org_Mouse
1203192 57

ATC...

IRG...

ATC InCDS
Overlapping
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

41686 ENSMUST00000172362 Ppp6r3-203 protein_coding Ribo-seq
1 sORFs_org_Mouse
1159822 45

ATG...

MKS...

ATG Alternative
InCDS
Overlapping
sORF
BMDC, NSC, v6-5,
Glioma, Liver, MEF,
MESC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

41686 ENSMUST00000172362 Ppp6r3-203 protein_coding Ribo-seq
weak 3 sORFs_org_Mouse
411584 ENSMUST00000025846 Ppp6r3-201 protein_coding Ribo-seq
weak 2 sORFs_org_Mouse
Johnstone2016
1200830 57

AAG...

KTC...

AAG Alternative
InCDS
Overlapping
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

41686 ENSMUST00000172362 Ppp6r3-203 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
1362964 60

CTG...

LGF...

CTG Alternative
InCDS
Overlapping
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

41686 ENSMUST00000172362 Ppp6r3-203 protein_coding Ribo-seq
1 sORFs_org_Mouse
726882 195

ATG...

MMA...

ATG Alternative
InCDS
Overlapping
sORF
MEF, 3T3, B_cell,
Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

41686 ENSMUST00000172362 Ppp6r3-203 protein_coding Ribo-seq
1 sORFs_org_Mouse
411584 ENSMUST00000025846 Ppp6r3-201 protein_coding Ribo-seq
3 sORFs_org_Mouse
1200698 48

ATC...

IGC...

ATC Alternative
InCDS
Overlapping
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

41686 ENSMUST00000172362 Ppp6r3-203 protein_coding Ribo-seq
1 sORFs_org_Mouse
1157912 36

ATG...

MRR...

ATG Alternative
InCDS
Overlapping
sORF
Glioma, Liver, MEF,
MESC, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

411584 ENSMUST00000025846 Ppp6r3-201 protein_coding Ribo-seq
weak 2 sORFs_org_Mouse
Johnstone2016
41686 ENSMUST00000172362 Ppp6r3-203 protein_coding Ribo-seq
weak 2 sORFs_org_Mouse
42296 30

ATG...

MVS...

ATG sORF
Upstream
3T3, B_cell, C2C12,
Glioma, Liver, MEF,
MESC, Spleen_B_cell, BMDC,
E14, NSC, R1E,
Testis, v6-5, Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

411584 ENSMUST00000025846 Ppp6r3-201 protein_coding Ribo-seq
moderate 6 sORFs_org_Mouse
Johnstone2016
41686 ENSMUST00000172362 Ppp6r3-203 protein_coding Ribo-seq
moderate 10 sORFs_org_Mouse
92042 ENSMUST00000113997 Ppp6r3-202 protein_coding Ribo-seq
moderate 2 sORFs_org_Mouse
726833 150

TTG...

LHL...

TTG Alternative
InCDS
Overlapping
sORF
MEF, 3T3, B_cell,
Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

41686 ENSMUST00000172362 Ppp6r3-203 protein_coding Ribo-seq
1 sORFs_org_Mouse
411584 ENSMUST00000025846 Ppp6r3-201 protein_coding Ribo-seq
3 sORFs_org_Mouse
806332 81

TTG...

LTS...

TTG InCDS
Overlapping
sORF
B_cell, Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

411584 ENSMUST00000025846 Ppp6r3-201 protein_coding Ribo-seq
2 sORFs_org_Mouse
727103 87

ATG...

MMK...

ATG InCDS
Overlapping
sORF
3T3, E14, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

92042 ENSMUST00000113997 Ppp6r3-202 protein_coding Ribo-seq
3 sORFs_org_Mouse
719766 54

TTG...

LSS...

TTG Alternative
InCDS
Overlapping
sORF
3T3, E14, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

411584 ENSMUST00000025846 Ppp6r3-201 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
41686 ENSMUST00000172362 Ppp6r3-203 protein_coding Ribo-seq
weak 2 sORFs_org_Mouse
1204704 171

ATA...

ISG...

ATA Alternative
InCDS
Overlapping
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

41686 ENSMUST00000172362 Ppp6r3-203 protein_coding Ribo-seq
1 sORFs_org_Mouse
804486 30

CTG...

LEH...

CTG Alternative
InCDS
Overlapping
sORF
B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

411584 ENSMUST00000025846 Ppp6r3-201 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
406861 48

ATG...

MAQ...

ATG Alternative
InCDS
Overlapping
sORF
3T3, Brain, MEF,
v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

411584 ENSMUST00000025846 Ppp6r3-201 protein_coding Ribo-seq
strong 1 sORFs_org_Mouse
92042 ENSMUST00000113997 Ppp6r3-202 protein_coding Ribo-seq
strong 1 sORFs_org_Mouse
41686 ENSMUST00000172362 Ppp6r3-203 protein_coding Ribo-seq
strong 2 sORFs_org_Mouse
410517 48

TTG...

LDL...

TTG InCDS
Overlapping
sORF
Brain, Liver, R1E,
v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

92042 ENSMUST00000113997 Ppp6r3-202 protein_coding Ribo-seq
1 sORFs_org_Mouse
41686 ENSMUST00000172362 Ppp6r3-203 protein_coding Ribo-seq
3 sORFs_org_Mouse
719732 33

GTG...

VSC...

GTG Alternative
InCDS
Overlapping
sORF
3T3
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

411584 ENSMUST00000025846 Ppp6r3-201 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
491247 69

ATG...

MRR...

ATG Alternative
InCDS
Overlapping
sORF
NSC, 3T3, Glioma,
Liver, MEF, MESC,
Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

41686 ENSMUST00000172362 Ppp6r3-203 protein_coding Ribo-seq
1 sORFs_org_Mouse
411584 ENSMUST00000025846 Ppp6r3-201 protein_coding Ribo-seq
3 sORFs_org_Mouse
Johnstone2016
1204389 291

ATC...

IGC...

ATC Alternative
InCDS
Overlapping
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

41686 ENSMUST00000172362 Ppp6r3-203 protein_coding Ribo-seq
1 sORFs_org_Mouse
963344 54

ATT...

ISF...

ATT Overlapping
sORF
Upstream
BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

411584 ENSMUST00000025846 Ppp6r3-201 protein_coding Ribo-seq
1 sORFs_org_Mouse
724951 192

ATG...

MAA...

ATG Alternative
InCDS
Overlapping
sORF
3T3, B_cell, Brain,
E14, MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

411584 ENSMUST00000025846 Ppp6r3-201 protein_coding Ribo-seq
3 sORFs_org_Mouse
41686 ENSMUST00000172362 Ppp6r3-203 protein_coding Ribo-seq
2 sORFs_org_Mouse
409763 36

ATG...

MNS...

ATG InCDS
Overlapping
sORF
Glioma, Liver, MEF,
MESC, R1E, v6-5,
Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

411584 ENSMUST00000025846 Ppp6r3-201 protein_coding Ribo-seq
1 Johnstone2016
41686 ENSMUST00000172362 Ppp6r3-203 protein_coding Ribo-seq
3 sORFs_org_Mouse
92042 ENSMUST00000113997 Ppp6r3-202 protein_coding Ribo-seq
1 sORFs_org_Mouse
1868677 66

CTG...

LLD...

CTG sORF
R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

41686 ENSMUST00000172362 Ppp6r3-203 protein_coding Ribo-seq
1 sORFs_org_Mouse
411765 99

ATA...

IAV...

ATA sORF
Upstream
C2C12
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

411584 ENSMUST00000025846 Ppp6r3-201 protein_coding Ribo-seq
1 sORFs_org_Mouse
806364 36

ATG...

MGK...

ATG Alternative
InCDS
Overlapping
sORF
B_cell, Glioma, Liver,
MEF, MESC, E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

411584 ENSMUST00000025846 Ppp6r3-201 protein_coding Ribo-seq
moderate 3 sORFs_org_Mouse
Johnstone2016
41686 ENSMUST00000172362 Ppp6r3-203 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
725349 111

CTG...

LQS...

CTG Alternative
InCDS
Overlapping
sORF
3T3, B_cell, E14,
NSC, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

411584 ENSMUST00000025846 Ppp6r3-201 protein_coding Ribo-seq
2 sORFs_org_Mouse
41686 ENSMUST00000172362 Ppp6r3-203 protein_coding Ribo-seq
3 sORFs_org_Mouse
487304 66

ATG...

MLL...

ATG Alternative
InCDS
Overlapping
sORF
3T3, B_cell, Glioma,
Liver, MEF, MESC,
Spleen_B_cell, E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

411584 ENSMUST00000025846 Ppp6r3-201 protein_coding Ribo-seq
moderate 4 sORFs_org_Mouse
Johnstone2016
41686 ENSMUST00000172362 Ppp6r3-203 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
725985 294

TTG...

LIG...

TTG Alternative
InCDS
Overlapping
sORF
MEF, 3T3, B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

41686 ENSMUST00000172362 Ppp6r3-203 protein_coding Ribo-seq
1 sORFs_org_Mouse
411584 ENSMUST00000025846 Ppp6r3-201 protein_coding Ribo-seq
2 sORFs_org_Mouse
401733 63

TTG...

LRM...

TTG Alternative
InCDS
Overlapping
sORF
E14, MEF, v6-5,
Brain, 3T3
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

41686 ENSMUST00000172362 Ppp6r3-203 protein_coding Ribo-seq
weak 4 sORFs_org_Mouse
92042 ENSMUST00000113997 Ppp6r3-202 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
411584 ENSMUST00000025846 Ppp6r3-201 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
1157828 39

TTG...

LKP...

TTG Alternative
InCDS
Overlapping
sORF
MEF, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

41686 ENSMUST00000172362 Ppp6r3-203 protein_coding Ribo-seq
2 sORFs_org_Mouse
411584 ENSMUST00000025846 Ppp6r3-201 protein_coding Ribo-seq
1 sORFs_org_Mouse
1203078 48

AAG...

KPA...

AAG Alternative
InCDS
Overlapping
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

41686 ENSMUST00000172362 Ppp6r3-203 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
726927 78

TTG...

LTL...

TTG InCDS
Overlapping
sORF
3T3, E14, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

92042 ENSMUST00000113997 Ppp6r3-202 protein_coding Ribo-seq
3 sORFs_org_Mouse
488489 69

GTG...

VFL...

GTG Alternative
InCDS
Overlapping
sORF
E14, Liver, R1E,
v6-5, Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

41686 ENSMUST00000172362 Ppp6r3-203 protein_coding Ribo-seq
4 sORFs_org_Mouse
411584 ENSMUST00000025846 Ppp6r3-201 protein_coding Ribo-seq
1 sORFs_org_Mouse
726015 240

TTG...

LPC...

TTG Alternative
InCDS
Overlapping
sORF
MEF, 3T3, B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

41686 ENSMUST00000172362 Ppp6r3-203 protein_coding Ribo-seq
1 sORFs_org_Mouse
411584 ENSMUST00000025846 Ppp6r3-201 protein_coding Ribo-seq
2 sORFs_org_Mouse
92041 69

TTG...

LKP...

TTG InCDS
Overlapping
sORF
3T3, Spleen_B_cell, Brain,
Liver, R1E, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

411584 ENSMUST00000025846 Ppp6r3-201 protein_coding Ribo-seq
2 sORFs_org_Mouse
92042 ENSMUST00000113997 Ppp6r3-202 protein_coding Ribo-seq
1 sORFs_org_Mouse
41686 ENSMUST00000172362 Ppp6r3-203 protein_coding Ribo-seq
3 sORFs_org_Mouse
1204987 126

ACG...

TPR...

ACG Alternative
InCDS
Overlapping
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

41686 ENSMUST00000172362 Ppp6r3-203 protein_coding Ribo-seq
1 sORFs_org_Mouse
727059 90

GTG...

VMM...

GTG InCDS
Overlapping
sORF
3T3, E14, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

92042 ENSMUST00000113997 Ppp6r3-202 protein_coding Ribo-seq
3 sORFs_org_Mouse
1545600 33

CTG...

LLS...

CTG Alternative
InCDS
Overlapping
sORF
MEF, Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

41686 ENSMUST00000172362 Ppp6r3-203 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
411584 ENSMUST00000025846 Ppp6r3-201 protein_coding Ribo-seq
weak 2 sORFs_org_Mouse
411583 39

ATG...

MGK...

ATG Alternative
sORF
Upstream
Brain, 3T3, B_cell,
C2C12, Glioma, Liver,
MEF, MESC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

92042 ENSMUST00000113997 Ppp6r3-202 protein_coding Ribo-seq
strong 1 sORFs_org_Mouse
411584 ENSMUST00000025846 Ppp6r3-201 protein_coding Ribo-seq
strong 4 sORFs_org_Mouse
Johnstone2016
1544919 60

ATG...

MRS...

ATG InCDS
Overlapping
sORF
Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

411584 ENSMUST00000025846 Ppp6r3-201 protein_coding Ribo-seq
1 sORFs_org_Mouse
488149 39

TTG...

LCT...

TTG InCDS
Overlapping
sORF
3T3, Spleen_B_cell, BMDC,
E14, MEF, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

411584 ENSMUST00000025846 Ppp6r3-201 protein_coding Ribo-seq
moderate 2 sORFs_org_Mouse
41686 ENSMUST00000172362 Ppp6r3-203 protein_coding Ribo-seq
moderate 4 sORFs_org_Mouse
489907 72

TTG...

LQR...

TTG InCDS
Overlapping
sORF
3T3, Brain, Spleen_B_cell,
E14, Liver, NSC,
v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

411584 ENSMUST00000025846 Ppp6r3-201 protein_coding Ribo-seq
weak 3 sORFs_org_Mouse
41686 ENSMUST00000172362 Ppp6r3-203 protein_coding Ribo-seq
weak 4 sORFs_org_Mouse
1157673 39

CTG...

LPP...

CTG Alternative
InCDS
Overlapping
sORF
v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

41686 ENSMUST00000172362 Ppp6r3-203 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
725625 180

ATG...

MKR...

ATG Alternative
InCDS
Overlapping
sORF
3T3, B_cell, E14,
MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

411584 ENSMUST00000025846 Ppp6r3-201 protein_coding Ribo-seq
2 sORFs_org_Mouse
41686 ENSMUST00000172362 Ppp6r3-203 protein_coding Ribo-seq
2 sORFs_org_Mouse
719010 48

TTG...

LSP...

TTG Alternative
InCDS
Overlapping
sORF
3T3, B_cell, Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

411584 ENSMUST00000025846 Ppp6r3-201 protein_coding Ribo-seq
weak 3 sORFs_org_Mouse
726461 198

TTG...

LMM...

TTG Alternative
InCDS
Overlapping
sORF
MEF, 3T3, B_cell,
Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

41686 ENSMUST00000172362 Ppp6r3-203 protein_coding Ribo-seq
1 sORFs_org_Mouse
411584 ENSMUST00000025846 Ppp6r3-201 protein_coding Ribo-seq
3 sORFs_org_Mouse
1201513 90

AAG...

KKN...

AAG Alternative
InCDS
Overlapping
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

41686 ENSMUST00000172362 Ppp6r3-203 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
1201294 39

ACG...

TAW...

ACG Alternative
InCDS
Overlapping
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

41686 ENSMUST00000172362 Ppp6r3-203 protein_coding Ribo-seq
strong 1 sORFs_org_Mouse
1202244 30

AAG...

KRM...

AAG Alternative
InCDS
Overlapping
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

41686 ENSMUST00000172362 Ppp6r3-203 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
805240 72

TTG...

LAS...

TTG InCDS
Overlapping
sORF
B_cell, Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

411584 ENSMUST00000025846 Ppp6r3-201 protein_coding Ribo-seq
2 sORFs_org_Mouse
1204458 162

AGG...

RRS...

AGG Alternative
InCDS
Overlapping
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

41686 ENSMUST00000172362 Ppp6r3-203 protein_coding Ribo-seq
1 sORFs_org_Mouse
725550 66

ATG...

MSH...

ATG Alternative
InCDS
Overlapping
sORF
3T3, Glioma, Liver,
MEF, MESC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

411584 ENSMUST00000025846 Ppp6r3-201 protein_coding Ribo-seq
2 sORFs_org_Mouse
Johnstone2016
719407 96

GTG...

VRK...

GTG Alternative
InCDS
Overlapping
sORF
NSC, v6-5, 3T3,
B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

41686 ENSMUST00000172362 Ppp6r3-203 protein_coding Ribo-seq
2 sORFs_org_Mouse
411584 ENSMUST00000025846 Ppp6r3-201 protein_coding Ribo-seq
2 sORFs_org_Mouse
406460 57

ATG...

MQR...

ATG Alternative
InCDS
Overlapping
sORF
3T3, Glioma, Liver,
MEF, MESC, Brain,
v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

411584 ENSMUST00000025846 Ppp6r3-201 protein_coding Ribo-seq
moderate 2 sORFs_org_Mouse
Johnstone2016
92042 ENSMUST00000113997 Ppp6r3-202 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
41686 ENSMUST00000172362 Ppp6r3-203 protein_coding Ribo-seq
moderate 2 sORFs_org_Mouse
490152 63

CTG...

LLA...

CTG Alternative
InCDS
Overlapping
sORF
3T3, B_cell, Spleen_B_cell,
E14, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

411584 ENSMUST00000025846 Ppp6r3-201 protein_coding Ribo-seq
moderate 3 sORFs_org_Mouse
41686 ENSMUST00000172362 Ppp6r3-203 protein_coding Ribo-seq
moderate 2 sORFs_org_Mouse
1201451 36

AAG...

KPG...

AAG Alternative
InCDS
Overlapping
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

41686 ENSMUST00000172362 Ppp6r3-203 protein_coding Ribo-seq
1 sORFs_org_Mouse
1205358 243

ATA...

ILP...

ATA Alternative
InCDS
Overlapping
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

41686 ENSMUST00000172362 Ppp6r3-203 protein_coding Ribo-seq
1 sORFs_org_Mouse
1204170 45

ATC...

IGH...

ATC Alternative
InCDS
Overlapping
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

41686 ENSMUST00000172362 Ppp6r3-203 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
1202825 48

AGG...

RQY...

AGG InCDS
Overlapping
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

41686 ENSMUST00000172362 Ppp6r3-203 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
404730 42

CTG...

LWK...

CTG Alternative
InCDS
Overlapping
sORF
Brain, E14, MEF,
R1E, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

92042 ENSMUST00000113997 Ppp6r3-202 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
41686 ENSMUST00000172362 Ppp6r3-203 protein_coding Ribo-seq
weak 4 sORFs_org_Mouse
411584 ENSMUST00000025846 Ppp6r3-201 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
1205083 228

AAG...

KHV...

AAG Alternative
InCDS
Overlapping
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

41686 ENSMUST00000172362 Ppp6r3-203 protein_coding Ribo-seq
1 sORFs_org_Mouse
720004 36

CTG...

LIK...

CTG Alternative
InCDS
Overlapping
sORF
3T3, MEF, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

411584 ENSMUST00000025846 Ppp6r3-201 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
41686 ENSMUST00000172362 Ppp6r3-203 protein_coding Ribo-seq
weak 3 sORFs_org_Mouse
963700 78

AAG...

KIW...

AAG Alternative
InCDS
Overlapping
sORF
BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

41686 ENSMUST00000172362 Ppp6r3-203 protein_coding Ribo-seq
1 sORFs_org_Mouse

Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5