Gene NCBI:378702 | MetamORF

Gene

ID CARD

NCBI:378702

Aliases

C80083
ENSMUSG00000074884, m4F5rel, MGI:1337041
Msmac1l, NCBI:378702, OFF:Serf2
Serf2

Chromosome

Transcripts

20 ORFs
2 known transcripts
21 ORF to known transcript associations

MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

ORFs

Display all the transcripts related to the entry.

105812

ENSMUST00000154418

Serf2-206

nonsense_mediated_decay

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
48093	267	GTG ...	VEL ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Downstream NMD sORF	B_cell, Brain, E14
47628	51	CTG ...	LTM ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Alternative Downstream NMD sORF	B_cell, Brain, E14, Liver, MEF
976696	210	AGG ...	RKH ...	Ribo-seq	AGG		2	sORFs_org_Mouse	Downstream NMD sORF	E14, MEF
1209080	93	ACG ...	TEM ...	Ribo-seq	ACG	strong	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14
1213988	51	AGG ...	REH ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14
1680207	111	TTG ...	LTR ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	MEF
44506	78	TTG ...	LET ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative Downstream NMD sORF	B_cell, MEF
1681133	135	TTG ...	LRG ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	MEF
45879	45	ATG ...	MRR ...	Ribo-seq	ATG		5	sORFs_org_Mouse	Alternative Downstream NMD sORF	B_cell, Brain, E14, Liver, MEF
1680303	123	GTG ...	VVD ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	MEF
1681849	42	CTG ...	LIM ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	MEF
1212478	60	AGG ...	RSL ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14
809359	81	ATG ...	MYK ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative Downstream NMD sORF	B_cell, MEF
96633	30	GTG ...	VEA ...	Ribo-seq	GTG	strong	4	sORFs_org_Mouse	Alternative Downstream NMD sORF	B_cell, Brain, E14, Liver
45594	45	GTG ...	VRS ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	Alternative Downstream NMD sORF	B_cell, E14, MEF
101826	54	TTG ...	LRE ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	Alternative Downstream NMD sORF	B_cell, Brain, Liver
48821	261	TTG ...	LEL ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Downstream NMD sORF	B_cell, Brain, E14
1681552	36	ATG ...	MCF ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	MEF
113995	33	GTG ...	VVE ...	Ribo-seq	GTG	strong	3	sORFs_org_Mouse	Alternative Downstream NMD sORF	B_cell, Brain, Liver
810107	153	GTG ...	VIF ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative Downstream NMD sORF	B_cell, MEF

45595

ENSMUST00000148575

Serf2-205

nonsense_mediated_decay

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

45594

GTG ...

VRS ...

Ribo-seq

GTG

moderate

sORFs_org_Mouse

Testis

ORFs

20 ORFs
2 known transcripts
21 ORF to known transcript associations

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF Length

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Start codon

The start codon sequence of the ORF.

ORF annotations

A comma-separated list of all the annotations computed by our algorithm for the ORF. This list includes the annotations computed for the ORF for all transcripts. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of all the cell types in which the ORF has already been identified.

Transcripts

Display all the transcripts related to the entry.

96633

GTG...

VEA...

GTG

Intronic
sORF
Alternative
Downstream
NMD

Brain, Spleen_B_cell, B_cell,
E14, Liver

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
96634	ENSMUST00000125849	Hypk-203	retained_intron	Ribo-seq	strong	2	sORFs_org_Mouse
105812	ENSMUST00000154418	Serf2-206	nonsense_mediated_decay	Ribo-seq	strong	4	sORFs_org_Mouse

48093

267

GTG...

VEL...

GTG

Downstream
NMD
sORF
ncRNA

B_cell, Brain, E14,
Neutrophil, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
105812	ENSMUST00000154418	Serf2-206	nonsense_mediated_decay	Ribo-seq		3	sORFs_org_Mouse
44507	ENSMUST00000028677	Hypk-201	processed_transcript	Ribo-seq		2	sORFs_org_Mouse

101826

TTG...

LRE...

TTG

Intronic
sORF
ncRNA
Alternative
Downstream
NMD

NSC, E14, MEF,
Neutrophil, B_cell, Brain,
Liver, BMDC, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
1503213	ENSMUST00000131870	Hypk-205	retained_intron	Ribo-seq	moderate	1	sORFs_org_Mouse
44507	ENSMUST00000028677	Hypk-201	processed_transcript	Ribo-seq	moderate	3	sORFs_org_Mouse
105812	ENSMUST00000154418	Serf2-206	nonsense_mediated_decay	Ribo-seq	moderate	3	sORFs_org_Mouse
96634	ENSMUST00000125849	Hypk-203	retained_intron	Ribo-seq	moderate	3	sORFs_org_Mouse

48821

261

TTG...

LEL...

TTG

ncRNA
sORF
Downstream
NMD

Neutrophil, Testis, B_cell,
Brain, E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
44507	ENSMUST00000028677	Hypk-201	processed_transcript	Ribo-seq		2	sORFs_org_Mouse
105812	ENSMUST00000154418	Serf2-206	nonsense_mediated_decay	Ribo-seq		3	sORFs_org_Mouse

45594

GTG...

VRS...

GTG

Alternative
InCDS
Overlapping
sORF
Downstream
NMD
Intronic

3T3, R1E, Testis,
Brain, Spleen_B_cell, BMDC,
E14, MEF, Neutrophil,
v6-5, B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
49586	ENSMUST00000110612	Hypk-202	protein_coding	Ribo-seq	moderate	2	sORFs_org_Mouse
45595	ENSMUST00000148575	Serf2-205	nonsense_mediated_decay	Ribo-seq	moderate	1	sORFs_org_Mouse
96634	ENSMUST00000125849	Hypk-203	retained_intron	Ribo-seq	moderate	2	sORFs_org_Mouse
863645	ENSMUST00000126764	Hypk-204	protein_coding	Ribo-seq	moderate	7	sORFs_org_Mouse
105812	ENSMUST00000154418	Serf2-206	nonsense_mediated_decay	Ribo-seq	moderate	3	sORFs_org_Mouse

47628

CTG...

LTM...

CTG

Alternative
Downstream
NMD
sORF
InCDS
Overlapping
ncRNA
Intronic

B_cell, Brain, E14,
Liver, MEF, BMDC,
NSC, R1E, Testis,
v6-5, Spleen_B_cell, 3T3

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
105812	ENSMUST00000154418	Serf2-206	nonsense_mediated_decay	Ribo-seq		5	sORFs_org_Mouse
863645	ENSMUST00000126764	Hypk-204	protein_coding	Ribo-seq		1	sORFs_org_Mouse
44507	ENSMUST00000028677	Hypk-201	processed_transcript	Ribo-seq		10	sORFs_org_Mouse
96634	ENSMUST00000125849	Hypk-203	retained_intron	Ribo-seq	weak	1	sORFs_org_Mouse
49586	ENSMUST00000110612	Hypk-202	protein_coding	Ribo-seq		1	sORFs_org_Mouse

976696

210

AGG...

RKH...

AGG

Downstream
NMD
sORF

E14, MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
105812	ENSMUST00000154418	Serf2-206	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse

1209080

ACG...

TEM...

ACG

Alternative
Downstream
NMD
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
105812	ENSMUST00000154418	Serf2-206	nonsense_mediated_decay	Ribo-seq	strong	1	sORFs_org_Mouse

1213988

AGG...

REH...

AGG

Alternative
Downstream
NMD
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
105812	ENSMUST00000154418	Serf2-206	nonsense_mediated_decay	Ribo-seq	moderate	1	sORFs_org_Mouse

1680207

111

TTG...

LTR...

TTG

Alternative
Downstream
NMD
sORF

MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
105812	ENSMUST00000154418	Serf2-206	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

44506

TTG...

LET...

TTG

Alternative
Downstream
NMD
sORF
ncRNA

B_cell, MEF, E14,
Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
105812	ENSMUST00000154418	Serf2-206	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse
44507	ENSMUST00000028677	Hypk-201	processed_transcript	Ribo-seq		2	sORFs_org_Mouse

113995

GTG...

VVE...

GTG

ncRNA
sORF
Intronic
Alternative
Downstream
NMD

Brain, Spleen_B_cell, B_cell,
Liver, NSC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
44507	ENSMUST00000028677	Hypk-201	processed_transcript	Ribo-seq	strong	1	sORFs_org_Mouse
96634	ENSMUST00000125849	Hypk-203	retained_intron	Ribo-seq	strong	2	sORFs_org_Mouse
105812	ENSMUST00000154418	Serf2-206	nonsense_mediated_decay	Ribo-seq	strong	3	sORFs_org_Mouse
1503213	ENSMUST00000131870	Hypk-205	retained_intron	Ribo-seq	strong	1	sORFs_org_Mouse

1681133

135

TTG...

LRG...

TTG

Alternative
Downstream
NMD
sORF

MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
105812	ENSMUST00000154418	Serf2-206	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

45879

ATG...

MRR...

ATG

Alternative
Downstream
NMD
sORF
InCDS
Overlapping
ncRNA
Intronic

B_cell, Brain, E14,
Liver, MEF, 3T3,
BMDC, NSC, R1E,
Testis, v6-5, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
105812	ENSMUST00000154418	Serf2-206	nonsense_mediated_decay	Ribo-seq		5	sORFs_org_Mouse
49586	ENSMUST00000110612	Hypk-202	protein_coding	Ribo-seq		1	sORFs_org_Mouse
44507	ENSMUST00000028677	Hypk-201	processed_transcript	Ribo-seq		10	sORFs_org_Mouse
96634	ENSMUST00000125849	Hypk-203	retained_intron	Ribo-seq	moderate	1	sORFs_org_Mouse
863645	ENSMUST00000126764	Hypk-204	protein_coding	Ribo-seq		1	sORFs_org_Mouse

1680303

123

GTG...

VVD...

GTG

Alternative
Downstream
NMD
sORF

MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
105812	ENSMUST00000154418	Serf2-206	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

1681849

CTG...

LIM...

CTG

Alternative
Downstream
NMD
sORF

MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
105812	ENSMUST00000154418	Serf2-206	nonsense_mediated_decay	Ribo-seq	weak	1	sORFs_org_Mouse

1681552

ATG...

MCF...

ATG

Alternative
Downstream
sORF
NMD

Glioma, Liver, MEF,
MESC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
863645	ENSMUST00000126764	Hypk-204	protein_coding	Ribo-seq	moderate	1	Johnstone2016
105812	ENSMUST00000154418	Serf2-206	nonsense_mediated_decay	Ribo-seq	moderate	1	sORFs_org_Mouse

1212478

AGG...

RSL...

AGG

Alternative
Downstream
NMD
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
105812	ENSMUST00000154418	Serf2-206	nonsense_mediated_decay	Ribo-seq	moderate	1	sORFs_org_Mouse

809359

ATG...

MYK...

ATG

Alternative
Downstream
NMD
sORF
ncRNA

B_cell, MEF, R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
105812	ENSMUST00000154418	Serf2-206	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse
44507	ENSMUST00000028677	Hypk-201	processed_transcript	Ribo-seq		3	sORFs_org_Mouse

810107

153

GTG...

VIF...

GTG

Alternative
Downstream
NMD
sORF

B_cell, MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
105812	ENSMUST00000154418	Serf2-206	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse

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