Gene NCBI:28075 | MetamORF

Gene

ID CARD

NCBI:28075

Aliases

AI427858
AI850401, D15Wsu75e, DeSI-1
Desi1, ENSMUSG00000022472, Fam152b
MGI:106313, NCBI:28075, OFF:Desi1
Pppde2

Chromosome

Transcripts

23 ORFs
6 known transcripts
58 ORF to known transcript associations

MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

ORFs

Display all the transcripts related to the entry.

1405488

ENSMUST00000023110

Desi1-201

nonsense_mediated_decay

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
355044	114	GTG ...	VAA ...	Ribo-seq	GTG		1	sORFs_org_Mouse	NMD Overlapping sORF Upstream	Liver
359541	75	GTG ...	VGN ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	Liver
358842	105	TTG ...	LLG ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	Liver
359010	42	CTG ...	LEY ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	Liver
358876	84	GTG ...	VVD ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	Liver
30733	75	GTG ...	VAQ ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	Liver
31411	63	CTG ...	LTG ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	Liver
31725	33	CTG ...	LSS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	Liver

355613

ENSMUST00000089187

Desi1-202

nonsense_mediated_decay

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
355044	114	GTG ...	VAA ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative NMD Overlapping sORF Upstream	R1E
358876	84	GTG ...	VVD ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative Downstream NMD Overlapping sORF	Brain, R1E
356868	66	CTG ...	LDS ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	R1E
30733	75	GTG ...	VAQ ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	R1E
31725	33	CTG ...	LSS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	R1E
355612	60	TTG ...	LYT ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain
358842	105	TTG ...	LLG ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative Downstream NMD Overlapping sORF	Brain, R1E
359541	75	GTG ...	VGN ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative Downstream NMD sORF	Brain, R1E
361345	39	CTG ...	LWQ ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	R1E
31411	63	CTG ...	LTG ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	R1E
359010	42	CTG ...	LEY ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	R1E

30734

ENSMUST00000146628

Desi1-205

nonsense_mediated_decay

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
356980	48	ATG ...	MSS ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3, Brain
358876	84	GTG ...	VVD ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3, Brain
361345	39	CTG ...	LWQ ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Brain
31411	63	CTG ...	LTG ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative Downstream NMD Overlapping sORF	3T3, Brain, Testis
355044	114	GTG ...	VAA ...	Ribo-seq	GTG		4	sORFs_org_Mouse	NMD Overlapping sORF Upstream	3T3, Brain, E14
683187	48	TTG ...	LNT ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	CDS NMD sORF	3T3
358842	105	TTG ...	LLG ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3, Brain
1182206	135	CTG ...	LSK ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14
356868	66	CTG ...	LDS ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	Alternative Downstream NMD sORF	3T3, Brain, Liver
355612	60	TTG ...	LYT ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3
359010	42	CTG ...	LEY ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3, Brain
358399	48	CTG ...	LSS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Brain
30733	75	GTG ...	VAQ ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Alternative Downstream NMD Overlapping sORF	3T3, Brain, Testis
359541	75	GTG ...	VGN ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3, Brain
31725	33	CTG ...	LSS ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3, Brain, Testis

366597

ENSMUST00000129039

Desi1-203

processed_transcript

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
690768	246	CTG ...	LSS ...	Ribo-seq	CTG		7	sORFs_org_Mouse	ncRNA sORF	3T3, E14, Liver, MEF, Neutrophil, v6-5
683187	48	TTG ...	LNT ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	ncRNA sORF	Neutrophil
366596	288	GTG ...	VGN ...	Ribo-seq	GTG		6	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, E14, Liver, MEF, Neutrophil
1182151	195	CTG ...	LSP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	E14
30733	75	GTG ...	VAQ ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Neutrophil
691359	297	GTG ...	VVD ...	Ribo-seq	GTG		5	sORFs_org_Mouse	ncRNA sORF	3T3, E14, Liver, MEF, Neutrophil
689477	255	CTG ...	LEY ...	Ribo-seq	CTG		7	sORFs_org_Mouse	ncRNA sORF	3T3, E14, Liver, MEF, Neutrophil, v6-5
949744	210	CTG ...	LGS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	BMDC

469490

ENSMUST00000135988

Desi1-204

nonsense_mediated_decay

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
683187	48	TTG ...	LNT ...	Ribo-seq	TTG	weak	3	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14, MEF
31725	33	CTG ...	LSS ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14, Spleen_B_cell
359541	75	GTG ...	VGN ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14, MEF, Spleen_B_cell
355612	60	TTG ...	LYT ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	MEF
358876	84	GTG ...	VVD ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14, MEF, Spleen_B_cell
361345	39	CTG ...	LWQ ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14, MEF, v6-5
30733	75	GTG ...	VAQ ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14, MEF, Spleen_B_cell, v6-5
355044	114	GTG ...	VAA ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Alternative NMD Overlapping sORF Upstream	E14, MEF, NSC, Spleen_B_cell
356868	66	CTG ...	LDS ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14, MEF, NSC, v6-5
359010	42	CTG ...	LEY ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14, Spleen_B_cell
358842	105	TTG ...	LLG ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Spleen_B_cell
358399	48	CTG ...	LSS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	MEF
356980	48	ATG ...	MSS ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	MEF
31411	63	CTG ...	LTG ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14, MEF, v6-5

366093

ENSMUST00000152227

Desi1-206

protein_coding

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

366092

222

ATG ...

MSS ...

Ribo-seq

ATG

sORFs_org_Mouse

3T3, Brain, MEF

366252

234

TTG ...

LYT ...

Ribo-seq

TTG

sORFs_org_Mouse

3T3, Brain, MEF

3001076

UNKNOWN_TRANSCRIPT

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
366092	222	ATG ...	MSS ...	Predicted	ATG		1	Samandi2017	sORF

ORFs

23 ORFs
6 known transcripts
58 ORF to known transcript associations

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF Length

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Start codon

The start codon sequence of the ORF.

ORF annotations

A comma-separated list of all the annotations computed by our algorithm for the ORF. This list includes the annotations computed for the ORF for all transcripts. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of all the cell types in which the ORF has already been identified.

Transcripts

Display all the transcripts related to the entry.

355044

114

GTG...

VAA...

GTG

NMD
Overlapping
sORF
Upstream
Alternative

Liver, R1E, 3T3,
Brain, E14, MEF,
NSC, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
1405488	ENSMUST00000023110	Desi1-201	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse
355613	ENSMUST00000089187	Desi1-202	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse
30734	ENSMUST00000146628	Desi1-205	nonsense_mediated_decay	Ribo-seq		4	sORFs_org_Mouse
469490	ENSMUST00000135988	Desi1-204	nonsense_mediated_decay	Ribo-seq		4	sORFs_org_Mouse

356980

ATG...

MSS...

ATG

Alternative
InCDS
NMD
Overlapping
sORF

3T3, Brain, MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
30734	ENSMUST00000146628	Desi1-205	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse
469490	ENSMUST00000135988	Desi1-204	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

690768

246

CTG...

LSS...

CTG

ncRNA
sORF

3T3, E14, Liver,
MEF, Neutrophil, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
366597	ENSMUST00000129039	Desi1-203	processed_transcript	Ribo-seq		7	sORFs_org_Mouse

683187

TTG...

LNT...

TTG

ncRNA
sORF
Alternative
Downstream
NMD
CDS

Neutrophil, E14, MEF,
3T3

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
366597	ENSMUST00000129039	Desi1-203	processed_transcript	Ribo-seq	weak	1	sORFs_org_Mouse
469490	ENSMUST00000135988	Desi1-204	nonsense_mediated_decay	Ribo-seq	weak	3	sORFs_org_Mouse
30734	ENSMUST00000146628	Desi1-205	nonsense_mediated_decay	Ribo-seq	weak	1	sORFs_org_Mouse

358876

GTG...

VVD...

GTG

Alternative
Downstream
NMD
Overlapping
sORF
InCDS

Brain, R1E, 3T3,
E14, MEF, Spleen_B_cell,
Liver

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
355613	ENSMUST00000089187	Desi1-202	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse
30734	ENSMUST00000146628	Desi1-205	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse
469490	ENSMUST00000135988	Desi1-204	nonsense_mediated_decay	Ribo-seq		3	sORFs_org_Mouse
1405488	ENSMUST00000023110	Desi1-201	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

359541

GTG...

VGN...

GTG

Alternative
Downstream
NMD
sORF
InCDS
Overlapping

Liver, E14, MEF,
Spleen_B_cell, Brain, R1E,
3T3

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
1405488	ENSMUST00000023110	Desi1-201	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse
469490	ENSMUST00000135988	Desi1-204	nonsense_mediated_decay	Ribo-seq		3	sORFs_org_Mouse
355613	ENSMUST00000089187	Desi1-202	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse
30734	ENSMUST00000146628	Desi1-205	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse

358842

105

TTG...

LLG...

TTG

Alternative
Downstream
NMD
sORF
InCDS
Overlapping

Liver, 3T3, Brain,
R1E, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
1405488	ENSMUST00000023110	Desi1-201	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse
30734	ENSMUST00000146628	Desi1-205	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse
355613	ENSMUST00000089187	Desi1-202	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse
469490	ENSMUST00000135988	Desi1-204	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

366596

288

GTG...

VGN...

GTG

ncRNA
sORF

3T3, Brain, E14,
Liver, MEF, Neutrophil

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
366597	ENSMUST00000129039	Desi1-203	processed_transcript	Ribo-seq		6	sORFs_org_Mouse

361345

CTG...

LWQ...

CTG

InCDS
NMD
Overlapping
sORF
Alternative

Brain, E14, MEF,
v6-5, R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
30734	ENSMUST00000146628	Desi1-205	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse
469490	ENSMUST00000135988	Desi1-204	nonsense_mediated_decay	Ribo-seq		4	sORFs_org_Mouse
355613	ENSMUST00000089187	Desi1-202	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

356868

CTG...

LDS...

CTG

Alternative
Downstream
NMD
sORF

R1E, 3T3, Brain,
Liver, E14, MEF,
NSC, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
355613	ENSMUST00000089187	Desi1-202	nonsense_mediated_decay	Ribo-seq	moderate	1	sORFs_org_Mouse
30734	ENSMUST00000146628	Desi1-205	nonsense_mediated_decay	Ribo-seq	moderate	4	sORFs_org_Mouse
469490	ENSMUST00000135988	Desi1-204	nonsense_mediated_decay	Ribo-seq	moderate	4	sORFs_org_Mouse

31411

CTG...

LTG...

CTG

Alternative
Downstream
NMD
Overlapping
sORF

3T3, Brain, Testis,
R1E, Liver, E14,
MEF, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
30734	ENSMUST00000146628	Desi1-205	nonsense_mediated_decay	Ribo-seq		3	sORFs_org_Mouse
355613	ENSMUST00000089187	Desi1-202	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse
1405488	ENSMUST00000023110	Desi1-201	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse
469490	ENSMUST00000135988	Desi1-204	nonsense_mediated_decay	Ribo-seq		3	sORFs_org_Mouse

359010

CTG...

LEY...

CTG

Alternative
Downstream
NMD
sORF
InCDS
Overlapping

Liver, 3T3, Brain,
E14, Spleen_B_cell, R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
1405488	ENSMUST00000023110	Desi1-201	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse
30734	ENSMUST00000146628	Desi1-205	nonsense_mediated_decay	Ribo-seq		3	sORFs_org_Mouse
469490	ENSMUST00000135988	Desi1-204	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse
355613	ENSMUST00000089187	Desi1-202	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

366092

222

ATG...

MSS...

ATG

Alternative
InCDS
Overlapping
sORF

3T3, Brain, MEF,

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
366093	ENSMUST00000152227	Desi1-206	protein_coding	Ribo-seq		3	sORFs_org_Mouse
3001076	UNKNOWN_TRANSCRIPT			Predicted		1	Samandi2017

31725

CTG...

LSS...

CTG

Alternative
InCDS
NMD
Overlapping
sORF
Downstream

E14, Spleen_B_cell, R1E,
Liver, 3T3, Brain,
Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
469490	ENSMUST00000135988	Desi1-204	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse
355613	ENSMUST00000089187	Desi1-202	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse
1405488	ENSMUST00000023110	Desi1-201	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse
30734	ENSMUST00000146628	Desi1-205	nonsense_mediated_decay	Ribo-seq		4	sORFs_org_Mouse

30733

GTG...

VAQ...

GTG

Alternative
Downstream
NMD
sORF
ncRNA
Overlapping

R1E, Neutrophil, E14,
MEF, Spleen_B_cell, v6-5,
3T3, Brain, Testis,
Liver

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
355613	ENSMUST00000089187	Desi1-202	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse
366597	ENSMUST00000129039	Desi1-203	processed_transcript	Ribo-seq		1	sORFs_org_Mouse
469490	ENSMUST00000135988	Desi1-204	nonsense_mediated_decay	Ribo-seq		4	sORFs_org_Mouse
30734	ENSMUST00000146628	Desi1-205	nonsense_mediated_decay	Ribo-seq		4	sORFs_org_Mouse
1405488	ENSMUST00000023110	Desi1-201	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

355612

TTG...

LYT...

TTG

Alternative
InCDS
NMD
Overlapping
sORF

MEF, 3T3, Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
469490	ENSMUST00000135988	Desi1-204	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse
30734	ENSMUST00000146628	Desi1-205	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse
355613	ENSMUST00000089187	Desi1-202	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

366252

234

TTG...

LYT...

TTG

Alternative
InCDS
Overlapping
sORF

3T3, Brain, MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
366093	ENSMUST00000152227	Desi1-206	protein_coding	Ribo-seq		3	sORFs_org_Mouse

1182151

195

CTG...

LSP...

CTG

ncRNA
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
366597	ENSMUST00000129039	Desi1-203	processed_transcript	Ribo-seq		1	sORFs_org_Mouse

1182206

135

CTG...

LSK...

CTG

Alternative
InCDS
NMD
Overlapping
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
30734	ENSMUST00000146628	Desi1-205	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

691359

297

GTG...

VVD...

GTG

ncRNA
sORF

3T3, E14, Liver,
MEF, Neutrophil

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
366597	ENSMUST00000129039	Desi1-203	processed_transcript	Ribo-seq		5	sORFs_org_Mouse

358399

CTG...

LSS...

CTG

InCDS
NMD
Overlapping
sORF
Alternative

Brain, MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
30734	ENSMUST00000146628	Desi1-205	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse
469490	ENSMUST00000135988	Desi1-204	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

689477

255

CTG...

LEY...

CTG

ncRNA
sORF

3T3, E14, Liver,
MEF, Neutrophil, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
366597	ENSMUST00000129039	Desi1-203	processed_transcript	Ribo-seq		7	sORFs_org_Mouse

949744

210

CTG...

LGS...

CTG

ncRNA
sORF

BMDC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
366597	ENSMUST00000129039	Desi1-203	processed_transcript	Ribo-seq		1	sORFs_org_Mouse

Export data