Gene NCBI:27643 | MetamORF

Gene

ID CARD

NCBI:27643

Aliases

DXHXS254E
DXS254E, DXS254Eh, ENSMUSG00000015290
Gdx, MGI:95049, NCBI:27643
OFF:Ubl4a, Ubl4, Ubl4a

Chromosome

Transcripts

50 ORFs
7 known transcripts
87 ORF to known transcript associations

MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

ORFs

Display all the transcripts related to the entry.

88595

ENSMUST00000015434

Ubl4a-201

nonsense_mediated_decay

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
441547	36	GTG ...	VTE ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	MEF
1034369	90	CTG ...	LAR ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	Brain
89043	162	CTG ...	LEE ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative Downstream NMD sORF	Brain, Testis
975061	72	ATC ...	IER ...	Ribo-seq	ATC	strong	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	MEF
1034897	177	GTG ...	VAE ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain
1034672	159	GTG ...	VST ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain
89550	231	CTG ...	LSD ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative Downstream NMD Overlapping sORF	Brain, Testis
1034448	150	CTG ...	LKH ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain
88788	177	TTG ...	LEK ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Alternative Downstream NMD sORF	Brain, Testis
88594	63	TTG ...	LAS ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	Testis
1693600	84	CTG ...	LSP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	MEF
7373	96	TTG ...	LSR ...	Ribo-seq	TTG	weak	3	sORFs_org_Mouse	Alternative Downstream NMD sORF	Brain, MEF, Testis
88705	138	CTG ...	LVD ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative Downstream NMD sORF	Brain, Testis
1035056	141	CTG ...	LVS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain
7286	81	CTG ...	LDD ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	Testis
89536	168	GTG ...	VLL ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative Downstream NMD sORF	Brain, Testis
88871	105	CTG ...	LIS ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative Downstream NMD sORF	Brain, Testis
1034655	126	CTG ...	LNV ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain

885612

ENSMUST00000140632

Ubl4a-205

retained_intron

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
441547	36	GTG ...	VTE ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Intronic sORF	MEF
282842	45	ATG ...	MTS ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Intronic sORF	BMDC
279708	48	ATG ...	MSL ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Intronic sORF	Liver
88594	63	TTG ...	LAS ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Intronic sORF	BMDC, MEF
1693600	84	CTG ...	LSP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	MEF
283077	87	TTG ...	LLS ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Intronic sORF	Liver
282847	57	CTG ...	LGR ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Intronic sORF	MEF
7286	81	CTG ...	LDD ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Intronic sORF	BMDC
284159	42	CTG ...	LCA ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	BMDC, Liver
7373	96	TTG ...	LSR ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	Intronic sORF	BMDC, MEF

282523

ENSMUST00000178691

Ubl4a-207

protein_coding

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
635553	165	CTG ...	LPP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative sORF Upstream	B_cell
282847	57	CTG ...	LGR ...	Ribo-seq	CTG	strong	2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	B_cell, Brain
282522	54	ATG ...	MKN ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
767718	192	TTG ...	LTS ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative sORF Upstream	B_cell
282842	45	ATG ...	MTS ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain
633879	174	CTG ...	LVF ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative sORF Upstream	B_cell
631691	54	CTG ...	LPP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative sORF Upstream	B_cell

7287

ENSMUST00000126117

Ubl4a-203

processed_transcript

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
282847	57	CTG ...	LGR ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	ncRNA sORF	R1E
89914	96	CTG ...	LTV ...	Ribo-seq	CTG		14	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, R1E, Spleen_B_cell, Testis, v6-5
1034369	90	CTG ...	LAR ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	R1E
88788	177	TTG ...	LEK ...	Ribo-seq	TTG		3	sORFs_org_Mouse	ncRNA sORF	Liver, R1E, Spleen_B_cell
89868	141	GTG ...	VFA ...	Ribo-seq	GTG		12	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, Brain, Liver, MEF, Neutrophil, R1E, Spleen_B_cell, Testis, v6-5
444285	246	GTG ...	VLL ...	Ribo-seq	GTG		4	sORFs_org_Mouse	ncRNA sORF	B_cell, Liver, R1E, Spleen_B_cell
928142	36	AGG ...	RRS ...	Ribo-seq	AGG		1	sORFs_org_Mouse	ncRNA sORF	BMDC
89977	132	TTG ...	LAV ...	Ribo-seq	TTG		13	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, Brain, E14, Liver, MEF, Neutrophil, R1E, Spleen_B_cell, Testis, v6-5
441547	36	GTG ...	VTE ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	ncRNA sORF	R1E, Spleen_B_cell
88705	138	CTG ...	LVD ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	Liver, R1E
89536	168	GTG ...	VLL ...	Ribo-seq	GTG		3	sORFs_org_Mouse	ncRNA sORF	Liver, R1E, Spleen_B_cell
7493	183	CTG ...	LIS ...	Ribo-seq	CTG		6	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, Liver, R1E, Skin_tumor, Spleen_B_cell
1034897	177	GTG ...	VAE ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Liver
285655	216	CTG ...	LVD ...	Ribo-seq	CTG		6	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, Brain, Liver, R1E, Spleen_B_cell
7505	168	CTG ...	LAR ...	Ribo-seq	CTG		5	sORFs_org_Mouse	ncRNA sORF	B_cell, Liver, R1E, Skin_tumor, Spleen_B_cell
444119	240	CTG ...	LEE ...	Ribo-seq	CTG		4	sORFs_org_Mouse	ncRNA sORF	B_cell, Liver, R1E, Spleen_B_cell
7286	81	CTG ...	LDD ...	Ribo-seq	CTG	strong	4	sORFs_org_Mouse	ncRNA sORF	Liver, R1E, Skin_tumor, Spleen_B_cell
279708	48	ATG ...	MSL ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	R1E
89845	90	GTG ...	VKA ...	Ribo-seq	GTG		17	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, BMDC, Brain, C2C12, E14, Liver, MEF, R1E, Spleen_B_cell, Testis, v6-5
280809	36	ATG ...	MPA ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	Spleen_B_cell
284159	42	CTG ...	LCA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	R1E
7486	129	CTG ...	LEQ ...	Ribo-seq	CTG		5	sORFs_org_Mouse	ncRNA sORF	B_cell, Liver, R1E, Skin_tumor, Spleen_B_cell
282842	45	ATG ...	MTS ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	ncRNA sORF	R1E, Spleen_B_cell
89043	162	CTG ...	LEE ...	Ribo-seq	CTG		3	sORFs_org_Mouse	ncRNA sORF	Liver, R1E, Spleen_B_cell
88871	105	CTG ...	LIS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	R1E
89550	231	CTG ...	LSD ...	Ribo-seq	CTG		3	sORFs_org_Mouse	ncRNA sORF	Liver, R1E, Spleen_B_cell
443970	255	TTG ...	LEK ...	Ribo-seq	TTG		4	sORFs_org_Mouse	ncRNA sORF	B_cell, Liver, R1E, Spleen_B_cell
7373	96	TTG ...	LSR ...	Ribo-seq	TTG	weak	4	sORFs_org_Mouse	ncRNA sORF	Liver, R1E, Skin_tumor, Spleen_B_cell
88594	63	TTG ...	LAS ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	ncRNA sORF	Liver, R1E, Spleen_B_cell
89695	123	GTG ...	VDW ...	Ribo-seq	GTG		14	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, Brain, E14, Liver, MEF, Neutrophil, R1E, Spleen_B_cell, Testis, v6-5
89709	111	GTG ...	VDT ...	Ribo-seq	GTG		17	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, R1E, Spleen_B_cell, Testis, v6-5
286137	51	ATG ...	MPA ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	3T3

279709

ENSMUST00000155676

Ubl4a-206

protein_coding

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
284159	42	CTG ...	LCA ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, MEF, NSC
279708	48	ATG ...	MSL ...	Ribo-seq	ATG	weak	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, MEF, NSC
280809	36	ATG ...	MPA ...	Ribo-seq	ATG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF, Neutrophil
282842	45	ATG ...	MTS ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF
283077	87	TTG ...	LLS ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
282847	57	CTG ...	LGR ...	Ribo-seq	CTG	strong	5	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	MEF, Neutrophil, v6-5
629705	48	CTG ...	LPT ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
282522	54	ATG ...	MKN ...	Ribo-seq	ATG	weak	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, v6-5
286137	51	ATG ...	MPA ...	Ribo-seq	ATG		11	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC, Brain, MEF, Neutrophil, NSC, R1E, Spleen_B_cell

441577

ENSMUST00000126191

Ubl4a-204

retained_intron

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
282522	54	ATG ...	MKN ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Intronic sORF	Brain
282847	57	CTG ...	LGR ...	Ribo-seq	CTG	strong	2	sORFs_org_Mouse	Intronic sORF	3T3, Spleen_B_cell
284159	42	CTG ...	LCA ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Intronic sORF	3T3, BMDC
283077	87	TTG ...	LLS ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	Intronic sORF	3T3, Spleen_B_cell
629705	48	CTG ...	LPT ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	3T3
279708	48	ATG ...	MSL ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Intronic sORF	3T3

89704

ENSMUST00000125914

Ubl4a-202

processed_transcript

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1077938	300	TTG ...	LAV ...	Ribo-seq	TTG		2	sORFs_org_Mouse	ncRNA sORF	Liver, Neutrophil
89703	291	GTG ...	VDW ...	Ribo-seq	GTG		5	sORFs_org_Mouse	ncRNA sORF	Brain, E14, Liver, Neutrophil, Testis
89806	264	CTG ...	LTV ...	Ribo-seq	CTG		3	sORFs_org_Mouse	ncRNA sORF	Brain, Liver, Testis
1035598	258	GTG ...	VKA ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	Brain, Liver
89894	279	GTG ...	VDT ...	Ribo-seq	GTG		4	sORFs_org_Mouse	ncRNA sORF	Brain, E14, Liver, Testis

ORFs

50 ORFs
7 known transcripts
87 ORF to known transcript associations

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF Length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Start codon

The start codon sequence of the ORF.

ORF annotations

A comma-separated list of all the annotations computed by our algorithm for the ORF. This list includes the annotations computed for the ORF for all transcripts. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of all the cell types in which the ORF has already been identified.

Transcripts

Display all the transcripts related to the entry.

441547

GTG...

VTE...

GTG

Alternative
Downstream
NMD
sORF
Intronic
ncRNA

MEF, R1E, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
88595	ENSMUST00000015434	Ubl4a-201	nonsense_mediated_decay	Ribo-seq	moderate	1	sORFs_org_Mouse
885612	ENSMUST00000140632	Ubl4a-205	retained_intron	Ribo-seq	moderate	1	sORFs_org_Mouse
7287	ENSMUST00000126117	Ubl4a-203	processed_transcript	Ribo-seq	moderate	2	sORFs_org_Mouse

635553

165

CTG...

LPP...

CTG

Alternative
sORF
Upstream

B_cell, 3T3

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
282523	ENSMUST00000178691	Ubl4a-207	protein_coding	Ribo-seq		1	sORFs_org_Mouse
629423	ENSMUST00000037967	Slc10a3-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse

282847

CTG...

LGR...

CTG

ncRNA
sORF
Alternative
Overlapping
Upstream
Intronic

R1E, B_cell, Brain,
MEF, Neutrophil, v6-5,
3T3, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
7287	ENSMUST00000126117	Ubl4a-203	processed_transcript	Ribo-seq	strong	1	sORFs_org_Mouse
282523	ENSMUST00000178691	Ubl4a-207	protein_coding	Ribo-seq	strong	2	sORFs_org_Mouse
279709	ENSMUST00000155676	Ubl4a-206	protein_coding	Ribo-seq	strong	5	sORFs_org_Mouse
441577	ENSMUST00000126191	Ubl4a-204	retained_intron	Ribo-seq	strong	2	sORFs_org_Mouse
885612	ENSMUST00000140632	Ubl4a-205	retained_intron	Ribo-seq	strong	1	sORFs_org_Mouse

284159

CTG...

LCA...

CTG

Alternative
InCDS
Overlapping
sORF
Intronic
ncRNA

Brain, E14, MEF,
NSC, BMDC, Liver,
3T3, R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
279709	ENSMUST00000155676	Ubl4a-206	protein_coding	Ribo-seq	weak	4	sORFs_org_Mouse
885612	ENSMUST00000140632	Ubl4a-205	retained_intron	Ribo-seq		2	sORFs_org_Mouse
441577	ENSMUST00000126191	Ubl4a-204	retained_intron	Ribo-seq	weak	2	sORFs_org_Mouse
7287	ENSMUST00000126117	Ubl4a-203	processed_transcript	Ribo-seq		1	sORFs_org_Mouse

282842

ATG...

MTS...

ATG

Intronic
sORF
Downstream
NMD
Alternative
InCDS
Overlapping
ncRNA

BMDC, Glioma, Liver,
MEF, MESC, E14,
R1E, Spleen_B_cell, 3T3,
Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
885612	ENSMUST00000140632	Ubl4a-205	retained_intron	Ribo-seq	weak	1	sORFs_org_Mouse
2775780	ENSMUST00000015434	Ubl4a-201	nonsense_mediated_decay	Ribo-seq	weak	1	Johnstone2016
279709	ENSMUST00000155676	Ubl4a-206	protein_coding	Ribo-seq	weak	2	sORFs_org_Mouse
7287	ENSMUST00000126117	Ubl4a-203	processed_transcript	Ribo-seq	weak	2	sORFs_org_Mouse
282523	ENSMUST00000178691	Ubl4a-207	protein_coding	Ribo-seq	weak	2	sORFs_org_Mouse

89914

CTG...

LTV...

CTG

ncRNA
sORF

3T3, B_cell, BMDC,
Brain, E14, Liver,
MEF, R1E, Spleen_B_cell,
Testis, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
7287	ENSMUST00000126117	Ubl4a-203	processed_transcript	Ribo-seq		14	sORFs_org_Mouse

1034369

CTG...

LAR...

CTG

Alternative
Downstream
NMD
sORF
ncRNA

Brain, R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
88595	ENSMUST00000015434	Ubl4a-201	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse
7287	ENSMUST00000126117	Ubl4a-203	processed_transcript	Ribo-seq		1	sORFs_org_Mouse

282522

ATG...

MKN...

ATG

Intronic
sORF
Alternative
InCDS
Overlapping

Brain, E14, MEF,
v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
441577	ENSMUST00000126191	Ubl4a-204	retained_intron	Ribo-seq	weak	1	sORFs_org_Mouse
279709	ENSMUST00000155676	Ubl4a-206	protein_coding	Ribo-seq	weak	4	sORFs_org_Mouse
282523	ENSMUST00000178691	Ubl4a-207	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse

88788

177

TTG...

LEK...

TTG

ncRNA
sORF
Alternative
Downstream
NMD

Liver, R1E, Spleen_B_cell,
Brain, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
7287	ENSMUST00000126117	Ubl4a-203	processed_transcript	Ribo-seq		3	sORFs_org_Mouse
88595	ENSMUST00000015434	Ubl4a-201	nonsense_mediated_decay	Ribo-seq		3	sORFs_org_Mouse

89043

162

CTG...

LEE...

CTG

Alternative
Downstream
NMD
sORF
ncRNA

Brain, Testis, Liver,
R1E, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
88595	ENSMUST00000015434	Ubl4a-201	nonsense_mediated_decay	Ribo-seq		3	sORFs_org_Mouse
7287	ENSMUST00000126117	Ubl4a-203	processed_transcript	Ribo-seq		3	sORFs_org_Mouse

975061

ATC...

IER...

ATC

Alternative
Downstream
NMD
sORF

MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
88595	ENSMUST00000015434	Ubl4a-201	nonsense_mediated_decay	Ribo-seq	strong	1	sORFs_org_Mouse

279708

ATG...

MSL...

ATG

Alternative
InCDS
Overlapping
sORF
Intronic
ncRNA
NMD

Brain, E14, MEF,
NSC, Liver, R1E,
Glioma, MESC, 3T3

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
279709	ENSMUST00000155676	Ubl4a-206	protein_coding	Ribo-seq	weak	5	sORFs_org_Mouse
885612	ENSMUST00000140632	Ubl4a-205	retained_intron	Ribo-seq		1	sORFs_org_Mouse
7287	ENSMUST00000126117	Ubl4a-203	processed_transcript	Ribo-seq		1	sORFs_org_Mouse
2775780	ENSMUST00000015434	Ubl4a-201	nonsense_mediated_decay	Ribo-seq	weak	1	Johnstone2016
441577	ENSMUST00000126191	Ubl4a-204	retained_intron	Ribo-seq	weak	1	sORFs_org_Mouse

89868

141

GTG...

VFA...

GTG

ncRNA
sORF

3T3, B_cell, Brain,
Liver, MEF, Neutrophil,
R1E, Spleen_B_cell, Testis,
v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
7287	ENSMUST00000126117	Ubl4a-203	processed_transcript	Ribo-seq		12	sORFs_org_Mouse

280809

ATG...

MPA...

ATG

Alternative
InCDS
Overlapping
sORF
ncRNA

Brain, MEF, Neutrophil,
Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
279709	ENSMUST00000155676	Ubl4a-206	protein_coding	Ribo-seq		4	sORFs_org_Mouse
7287	ENSMUST00000126117	Ubl4a-203	processed_transcript	Ribo-seq		1	sORFs_org_Mouse

444285

246

GTG...

VLL...

GTG

ncRNA
sORF

B_cell, Liver, R1E,
Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
7287	ENSMUST00000126117	Ubl4a-203	processed_transcript	Ribo-seq		4	sORFs_org_Mouse

928142

AGG...

RRS...

AGG

ncRNA
sORF

BMDC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
7287	ENSMUST00000126117	Ubl4a-203	processed_transcript	Ribo-seq		1	sORFs_org_Mouse

89977

132

TTG...

LAV...

TTG

ncRNA
sORF

3T3, B_cell, Brain,
E14, Liver, MEF,
Neutrophil, R1E, Spleen_B_cell,
Testis, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
7287	ENSMUST00000126117	Ubl4a-203	processed_transcript	Ribo-seq		13	sORFs_org_Mouse

88594

TTG...

LAS...

TTG

Intronic
sORF
Alternative
Downstream
NMD
ncRNA

BMDC, MEF, Testis,
Liver, R1E, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
885612	ENSMUST00000140632	Ubl4a-205	retained_intron	Ribo-seq	moderate	2	sORFs_org_Mouse
88595	ENSMUST00000015434	Ubl4a-201	nonsense_mediated_decay	Ribo-seq	moderate	1	sORFs_org_Mouse
7287	ENSMUST00000126117	Ubl4a-203	processed_transcript	Ribo-seq	moderate	3	sORFs_org_Mouse

88705

138

CTG...

LVD...

CTG

ncRNA
sORF
Alternative
Downstream
NMD

Liver, R1E, Brain,
Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
7287	ENSMUST00000126117	Ubl4a-203	processed_transcript	Ribo-seq		2	sORFs_org_Mouse
88595	ENSMUST00000015434	Ubl4a-201	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse

1077938

300

TTG...

LAV...

TTG

ncRNA
sORF

Liver, Neutrophil

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
89704	ENSMUST00000125914	Ubl4a-202	processed_transcript	Ribo-seq		2	sORFs_org_Mouse

283077

TTG...

LLS...

TTG

Alternative
InCDS
Overlapping
sORF
Intronic

Brain, Liver, 3T3,
Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
279709	ENSMUST00000155676	Ubl4a-206	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse
885612	ENSMUST00000140632	Ubl4a-205	retained_intron	Ribo-seq	weak	1	sORFs_org_Mouse
441577	ENSMUST00000126191	Ubl4a-204	retained_intron	Ribo-seq	weak	2	sORFs_org_Mouse

1693600

CTG...

LSP...

CTG

Intronic
sORF
Alternative
InCDS
NMD
Overlapping

MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
885612	ENSMUST00000140632	Ubl4a-205	retained_intron	Ribo-seq		1	sORFs_org_Mouse
88595	ENSMUST00000015434	Ubl4a-201	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

89536

168

GTG...

VLL...

GTG

ncRNA
sORF
Alternative
Downstream
NMD

Liver, R1E, Spleen_B_cell,
Brain, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
7287	ENSMUST00000126117	Ubl4a-203	processed_transcript	Ribo-seq		3	sORFs_org_Mouse
88595	ENSMUST00000015434	Ubl4a-201	nonsense_mediated_decay	Ribo-seq		3	sORFs_org_Mouse

7493

183

CTG...

LIS...

CTG

ncRNA
sORF

B_cell, Brain, Liver,
R1E, Skin_tumor, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
7287	ENSMUST00000126117	Ubl4a-203	processed_transcript	Ribo-seq		6	sORFs_org_Mouse

1034897

177

GTG...

VAE...

GTG

ncRNA
sORF
Alternative
InCDS
NMD
Overlapping

Liver, Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
7287	ENSMUST00000126117	Ubl4a-203	processed_transcript	Ribo-seq		1	sORFs_org_Mouse
88595	ENSMUST00000015434	Ubl4a-201	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

285655

216

CTG...

LVD...

CTG

ncRNA
sORF

3T3, B_cell, Brain,
Liver, R1E, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
7287	ENSMUST00000126117	Ubl4a-203	processed_transcript	Ribo-seq		6	sORFs_org_Mouse

1034672

159

GTG...

VST...

GTG

Alternative
InCDS
NMD
Overlapping
sORF

Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
88595	ENSMUST00000015434	Ubl4a-201	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

7505

168

CTG...

LAR...

CTG

ncRNA
sORF

B_cell, Liver, R1E,
Skin_tumor, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
7287	ENSMUST00000126117	Ubl4a-203	processed_transcript	Ribo-seq		5	sORFs_org_Mouse

89550

231

CTG...

LSD...

CTG

Alternative
Downstream
NMD
Overlapping
sORF
ncRNA

Brain, Testis, Liver,
R1E, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
88595	ENSMUST00000015434	Ubl4a-201	nonsense_mediated_decay	Ribo-seq		3	sORFs_org_Mouse
7287	ENSMUST00000126117	Ubl4a-203	processed_transcript	Ribo-seq		3	sORFs_org_Mouse

89703

291

GTG...

VDW...

GTG

ncRNA
sORF

Brain, E14, Liver,
Neutrophil, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
89704	ENSMUST00000125914	Ubl4a-202	processed_transcript	Ribo-seq		5	sORFs_org_Mouse

444119

240

CTG...

LEE...

CTG

ncRNA
sORF

B_cell, Liver, R1E,
Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
7287	ENSMUST00000126117	Ubl4a-203	processed_transcript	Ribo-seq		4	sORFs_org_Mouse

7286

CTG...

LDD...

CTG

ncRNA
sORF
Intronic
Alternative
Downstream
NMD

Liver, R1E, Skin_tumor,
Spleen_B_cell, BMDC, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
7287	ENSMUST00000126117	Ubl4a-203	processed_transcript	Ribo-seq	strong	4	sORFs_org_Mouse
885612	ENSMUST00000140632	Ubl4a-205	retained_intron	Ribo-seq	strong	1	sORFs_org_Mouse
88595	ENSMUST00000015434	Ubl4a-201	nonsense_mediated_decay	Ribo-seq	strong	1	sORFs_org_Mouse

286137

ATG...

MPA...

ATG

Downstream
NMD
sORF
Alternative
InCDS
Overlapping
ncRNA

Glioma, Liver, MEF,
MESC, B_cell, BMDC,
Brain, Neutrophil, NSC,
R1E, Spleen_B_cell, 3T3

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
2775780	ENSMUST00000015434	Ubl4a-201	nonsense_mediated_decay	Ribo-seq		1	Johnstone2016
279709	ENSMUST00000155676	Ubl4a-206	protein_coding	Ribo-seq		11	sORFs_org_Mouse
7287	ENSMUST00000126117	Ubl4a-203	processed_transcript	Ribo-seq		1	sORFs_org_Mouse

631691

CTG...

LPP...

CTG

sORF
Upstream
Alternative

3T3, B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
629423	ENSMUST00000037967	Slc10a3-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse
282523	ENSMUST00000178691	Ubl4a-207	protein_coding	Ribo-seq		1	sORFs_org_Mouse

1034448

150

CTG...

LKH...

CTG

Alternative
InCDS
NMD
Overlapping
sORF

Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
88595	ENSMUST00000015434	Ubl4a-201	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

629705

CTG...

LPT...

CTG

Alternative
InCDS
Overlapping
sORF
Intronic

E14, 3T3

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
279709	ENSMUST00000155676	Ubl4a-206	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse
441577	ENSMUST00000126191	Ubl4a-204	retained_intron	Ribo-seq	moderate	1	sORFs_org_Mouse

89845

GTG...

VKA...

GTG

ncRNA
sORF

3T3, B_cell, BMDC,
Brain, C2C12, E14,
Liver, MEF, R1E,
Spleen_B_cell, Testis, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
7287	ENSMUST00000126117	Ubl4a-203	processed_transcript	Ribo-seq		17	sORFs_org_Mouse

7486

129

CTG...

LEQ...

CTG

ncRNA
sORF

B_cell, Liver, R1E,
Skin_tumor, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
7287	ENSMUST00000126117	Ubl4a-203	processed_transcript	Ribo-seq		5	sORFs_org_Mouse

89806

264

CTG...

LTV...

CTG

ncRNA
sORF

Brain, Liver, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
89704	ENSMUST00000125914	Ubl4a-202	processed_transcript	Ribo-seq		3	sORFs_org_Mouse

7373

TTG...

LSR...

TTG

Alternative
Downstream
NMD
sORF
Intronic
ncRNA

Brain, MEF, Testis,
BMDC, Liver, R1E,
Skin_tumor, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
88595	ENSMUST00000015434	Ubl4a-201	nonsense_mediated_decay	Ribo-seq	weak	3	sORFs_org_Mouse
885612	ENSMUST00000140632	Ubl4a-205	retained_intron	Ribo-seq	weak	2	sORFs_org_Mouse
7287	ENSMUST00000126117	Ubl4a-203	processed_transcript	Ribo-seq	weak	4	sORFs_org_Mouse

1035598

258

GTG...

VKA...

GTG

ncRNA
sORF

Brain, Liver

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
89704	ENSMUST00000125914	Ubl4a-202	processed_transcript	Ribo-seq		2	sORFs_org_Mouse

633879

174

CTG...

LVF...

CTG

sORF
Upstream
Alternative

3T3, B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
629423	ENSMUST00000037967	Slc10a3-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse
282523	ENSMUST00000178691	Ubl4a-207	protein_coding	Ribo-seq		1	sORFs_org_Mouse

88871

105

CTG...

LIS...

CTG

ncRNA
sORF
Alternative
Downstream
NMD

R1E, Brain, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
7287	ENSMUST00000126117	Ubl4a-203	processed_transcript	Ribo-seq		1	sORFs_org_Mouse
88595	ENSMUST00000015434	Ubl4a-201	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse

767718

192

TTG...

LTS...

TTG

Alternative
sORF
Upstream

B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
282523	ENSMUST00000178691	Ubl4a-207	protein_coding	Ribo-seq		1	sORFs_org_Mouse

443970

255

TTG...

LEK...

TTG

ncRNA
sORF

B_cell, Liver, R1E,
Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
7287	ENSMUST00000126117	Ubl4a-203	processed_transcript	Ribo-seq		4	sORFs_org_Mouse

1035056

141

CTG...

LVS...

CTG

Alternative
InCDS
NMD
Overlapping
sORF

Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
88595	ENSMUST00000015434	Ubl4a-201	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

89894

279

GTG...

VDT...

GTG

ncRNA
sORF

Brain, E14, Liver,
Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
89704	ENSMUST00000125914	Ubl4a-202	processed_transcript	Ribo-seq		4	sORFs_org_Mouse

89695

123

GTG...

VDW...

GTG

ncRNA
sORF

3T3, B_cell, Brain,
E14, Liver, MEF,
Neutrophil, R1E, Spleen_B_cell,
Testis, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
7287	ENSMUST00000126117	Ubl4a-203	processed_transcript	Ribo-seq		14	sORFs_org_Mouse

89709

111

GTG...

VDT...

GTG

ncRNA
sORF

3T3, B_cell, BMDC,
Brain, E14, Liver,
MEF, Neutrophil, R1E,
Spleen_B_cell, Testis, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
7287	ENSMUST00000126117	Ubl4a-203	processed_transcript	Ribo-seq		17	sORFs_org_Mouse

1034655

126

CTG...

LNV...

CTG

Alternative
InCDS
NMD
Overlapping
sORF

Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
88595	ENSMUST00000015434	Ubl4a-201	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

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