Gene NCBI:269702 | MetamORF

Gene

ID CARD

NCBI:269702

Aliases

4930548D04Rik
9630025B04Rik, AW413446, AW547060
B930097C17Rik, C87456, ENSMUSG00000038126
MGI:2443138, Mphosph9, MPP-9
MPP9, NCBI:269702, OFF:Mphosph9

Chromosome

Transcripts

5 ORFs
7 known transcripts
18 ORF to known transcript associations

MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

ORFs

Display all the transcripts related to the entry.

61768

ENSMUST00000031344

Mphosph9-201

protein_coding

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
61767	81	ATG ...	MPV ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse Johnstone2016	Alternative sORF Upstream	Glioma, Liver, MEF, MESC, Testis
62579	33	ATG ...	MSA ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse Johnstone2016	sORF Upstream	Glioma, Liver, MEF, MESC, Testis
169947	78	ATG ...	MKQ ...	Ribo-seq	ATG	moderate	1	Johnstone2016	Alternative sORF Upstream	Glioma, Liver, MEF, MESC

518979

ENSMUST00000149933

Mphosph9-208

processed_transcript

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
62579	33	ATG ...	MSA ...	Ribo-seq	ATG	weak	4	sORFs_org_Mouse	ncRNA sORF	BMDC, MEF, Spleen_B_cell, v6-5
61767	81	ATG ...	MPV ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	ncRNA sORF	MEF
181779	87	TTG ...	LRM ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	ncRNA sORF	MEF, R1E
169947	78	ATG ...	MKQ ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	ncRNA sORF	MEF

977387

ENSMUST00000141203

Mphosph9-204

nonsense_mediated_decay

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

62579

ATG ...

MSA ...

Ribo-seq

ATG

weak

sORFs_org_Mouse

MEF

175064

ENSMUST00000156013

Mphosph9-209

processed_transcript

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
61767	81	ATG ...	MPV ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, E14
62579	33	ATG ...	MSA ...	Ribo-seq	ATG	weak	3	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, E14
181779	87	TTG ...	LRM ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	ncRNA sORF	B_cell
1238810	36	ATA ...	IAN ...	Ribo-seq	ATA	strong	1	sORFs_org_Mouse	ncRNA sORF	E14

1802349

ENSMUST00000184951

Mphosph9-211

protein_coding

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

ORF annotations

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

62579

ATG ...

MSA ...

Ribo-seq

ATG

weak

sORFs_org_Mouse

R1E

61767

ATG ...

MPV ...

Ribo-seq

ATG

moderate

sORFs_org_Mouse

R1E

169948

ENSMUST00000130502

Mphosph9-203

nonsense_mediated_decay

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
62579	33	ATG ...	MSA ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	NMD sORF Upstream	MEF
181779	87	TTG ...	LRM ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Alternative NMD sORF Upstream	Brain
169947	78	ATG ...	MKQ ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative NMD sORF Upstream	Brain

562990

ENSMUST00000147737

Mphosph9-207

nonsense_mediated_decay

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

ORF annotations

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

62579

ATG ...

MSA ...

Ribo-seq

ATG

weak

sORFs_org_Mouse

3T3

ORFs

5 ORFs
7 known transcripts
18 ORF to known transcript associations

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF Length

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Start codon

The start codon sequence of the ORF.

ORF annotations

A comma-separated list of all the annotations computed by our algorithm for the ORF. This list includes the annotations computed for the ORF for all transcripts. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of all the cell types in which the ORF has already been identified.

Transcripts

Display all the transcripts related to the entry.

61767

ATG...

MPV...

ATG

Alternative
sORF
Upstream
ncRNA

Glioma, Liver, MEF,
MESC, Testis, B_cell,
Brain, E14, R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
61768	ENSMUST00000031344	Mphosph9-201	protein_coding	Ribo-seq	moderate	2	sORFs_org_Mouse Johnstone2016
175064	ENSMUST00000156013	Mphosph9-209	processed_transcript	Ribo-seq	moderate	3	sORFs_org_Mouse
518979	ENSMUST00000149933	Mphosph9-208	processed_transcript	Ribo-seq	moderate	1	sORFs_org_Mouse
1802349	ENSMUST00000184951	Mphosph9-211	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse

62579

ATG...

MSA...

ATG

ncRNA
sORF
NMD
Upstream

BMDC, MEF, Spleen_B_cell,
v6-5, Glioma, Liver,
MESC, Testis, R1E,
B_cell, Brain, E14,
3T3

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
518979	ENSMUST00000149933	Mphosph9-208	processed_transcript	Ribo-seq	weak	4	sORFs_org_Mouse
977387	ENSMUST00000141203	Mphosph9-204	nonsense_mediated_decay	Ribo-seq	weak	1	sORFs_org_Mouse
61768	ENSMUST00000031344	Mphosph9-201	protein_coding	Ribo-seq	weak	2	sORFs_org_Mouse Johnstone2016
1802349	ENSMUST00000184951	Mphosph9-211	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse
175064	ENSMUST00000156013	Mphosph9-209	processed_transcript	Ribo-seq	weak	3	sORFs_org_Mouse
169948	ENSMUST00000130502	Mphosph9-203	nonsense_mediated_decay	Ribo-seq	weak	1	sORFs_org_Mouse
562990	ENSMUST00000147737	Mphosph9-207	nonsense_mediated_decay	Ribo-seq	weak	1	sORFs_org_Mouse

181779

TTG...

LRM...

TTG

ncRNA
sORF
Alternative
NMD
Upstream

B_cell, MEF, R1E,
Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
175064	ENSMUST00000156013	Mphosph9-209	processed_transcript	Ribo-seq	weak	1	sORFs_org_Mouse
518979	ENSMUST00000149933	Mphosph9-208	processed_transcript	Ribo-seq	weak	2	sORFs_org_Mouse
169948	ENSMUST00000130502	Mphosph9-203	nonsense_mediated_decay	Ribo-seq	weak	1	sORFs_org_Mouse

169947

ATG...

MKQ...

ATG

Alternative
NMD
sORF
Upstream
ncRNA

Brain, MEF, Glioma,
Liver, MESC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
169948	ENSMUST00000130502	Mphosph9-203	nonsense_mediated_decay	Ribo-seq	moderate	1	sORFs_org_Mouse
518979	ENSMUST00000149933	Mphosph9-208	processed_transcript	Ribo-seq	moderate	1	sORFs_org_Mouse
61768	ENSMUST00000031344	Mphosph9-201	protein_coding	Ribo-seq	moderate	1	Johnstone2016

1238810

ATA...

IAN...

ATA

ncRNA
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
175064	ENSMUST00000156013	Mphosph9-209	processed_transcript	Ribo-seq	strong	1	sORFs_org_Mouse

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