Gene NCBI:26443 | MetamORF

Gene

ID CARD

NCBI:26443

Aliases

ENSMUSG00000021024
IOTA, MGI:1347006, NCBI:26443
OFF:Psma6, Psma6

Chromosome

Transcripts

60 ORFs
4 known transcripts
116 ORF to known transcript associations

MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

ORFs

Display all the transcripts related to the entry.

9625

ENSMUST00000021412

Psma6-201

protein_coding

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
327713	141	CTG ...	LTA ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	InCDS Overlapping sORF	R1E, Spleen_B_cell
9833	60	CTG ...	LLL ...	Ribo-seq	CTG		5	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, BMDC, R1E, Skin_tumor, Spleen_B_cell
9624	72	GTG ...	VDL ...	Ribo-seq	GTG		5	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, BMDC, R1E, Skin_tumor, Spleen_B_cell
325463	108	ATG ...	MRQ ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	InCDS Overlapping sORF	R1E, Spleen_B_cell
975648	90	ATA ...	IAG ...	Ribo-seq	ATA	strong	1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	MEF
9965	81	ATG ...	MAM ...	Ribo-seq	ATG	strong	3	sORFs_org_Mouse	InCDS Overlapping sORF	R1E, Skin_tumor, Spleen_B_cell
25760	36	GTG ...	VQL ...	Ribo-seq	GTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	R1E, Spleen_B_cell
25990	60	GTG ...	VQL ...	Ribo-seq	GTG		5	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, Liver, MEF, Spleen_B_cell
461355	78	CTG ...	LSE ...	Ribo-seq	CTG		7	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, BMDC, Liver, MEF, R1E, Spleen_B_cell
25440	96	ATG ...	MLL ...	Ribo-seq	ATG		3	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, R1E, Spleen_B_cell
326546	42	CTG ...	LCS ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, R1E, v6-5
330355	120	ATG ...	MLL ...	Ribo-seq	ATG		7	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, BMDC, Liver, MEF, R1E, Spleen_B_cell
460922	96	GTG ...	VDL ...	Ribo-seq	GTG		7	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, BMDC, Liver, MEF, R1E, Spleen_B_cell
321971	108	GTG ...	VQT ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, R1E, Spleen_B_cell
9739	75	ATG ...	MKF ...	Ribo-seq	ATG	moderate	4	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, R1E, Skin_tumor, Spleen_B_cell
25888	54	CTG ...	LSE ...	Ribo-seq	CTG		3	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, R1E, Spleen_B_cell
460670	81	TTG ...	LLS ...	Ribo-seq	TTG		7	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, BMDC, Liver, MEF, R1E, Spleen_B_cell
459394	135	TTG ...	LGP ...	Ribo-seq	TTG	strong	2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, Spleen_B_cell
458591	99	GTG ...	VFK ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, R1E, Spleen_B_cell
664722	51	TTG ...	LTV ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, MEF
461415	84	CTG ...	LLL ...	Ribo-seq	CTG		7	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, BMDC, Liver, MEF, R1E, Spleen_B_cell
9715	57	TTG ...	LLS ...	Ribo-seq	TTG		4	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, R1E, Skin_tumor, Spleen_B_cell
329873	87	TTG ...	LIG ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, R1E, Spleen_B_cell, v6-5
460061	57	CTG ...	LQL ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Spleen_B_cell
9768	33	TTG ...	LIG ...	Ribo-seq	TTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, R1E, Skin_tumor, Spleen_B_cell, v6-5
324155	120	GTG ...	VCY ...	Ribo-seq	GTG	weak	3	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, R1E, Spleen_B_cell
329827	63	TTG ...	LKI ...	Ribo-seq	TTG		4	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, BMDC, MEF, Spleen_B_cell
460254	66	CTG ...	LWT ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	InCDS Overlapping sORF	R1E, Spleen_B_cell

24430

ENSMUST00000162711

Psma6-202

nonsense_mediated_decay

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
25280	69	GTG ...	VVF ...	Ribo-seq	GTG		5	sORFs_org_Mouse	Downstream NMD sORF	B_cell, Brain, MEF, Neutrophil, Testis
25028	51	GTG ...	VFF ...	Ribo-seq	GTG		7	sORFs_org_Mouse	Alternative Downstream NMD sORF	Brain, Liver, MEF, Neutrophil, Testis
9768	33	TTG ...	LIG ...	Ribo-seq	TTG		6	sORFs_org_Mouse	Alternative Downstream NMD sORF	B_cell, Brain, Liver, MEF, Neutrophil
321971	108	GTG ...	VQT ...	Ribo-seq	GTG	moderate	4	sORFs_org_Mouse	Alternative NMD Overlapping sORF Upstream	B_cell, Brain, Liver
1345711	120	ATG ...	MKS ...	Ribo-seq	ATG	weak	1	Johnstone2016	Alternative Downstream NMD sORF	Glioma, Liver, MEF, MESC
321451	111	TTG ...	LFF ...	Ribo-seq	TTG		9	sORFs_org_Mouse	InCDS NMD Overlapping sORF	B_cell, Brain, Liver, MEF, Neutrophil
326546	42	CTG ...	LCS ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	B_cell, Brain, MEF
846594	42	TTG ...	LLI ...	Ribo-seq	TTG	moderate	4	sORFs_org_Mouse	Downstream NMD sORF	Liver, MEF, Neutrophil
324155	120	GTG ...	VCY ...	Ribo-seq	GTG	weak	4	sORFs_org_Mouse	Alternative NMD Overlapping sORF Upstream	B_cell, Brain, Liver
25477	57	ATG ...	MLV ...	Ribo-seq	ATG		5	sORFs_org_Mouse	Alternative Downstream NMD sORF	Brain, MEF, Testis
846019	39	CTG ...	LIF ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	Downstream NMD sORF	Liver, MEF, Neutrophil
25894	147	TTG ...	LKL ...	Ribo-seq	TTG		7	sORFs_org_Mouse	Downstream NMD Overlapping sORF	B_cell, Brain, Liver, MEF, Neutrophil
24429	54	TTG ...	LVF ...	Ribo-seq	TTG		6	sORFs_org_Mouse	Alternative Downstream NMD sORF	Brain, MEF, Neutrophil, Testis
24924	84	CTG ...	LST ...	Ribo-seq	CTG		9	sORFs_org_Mouse	Alternative Downstream NMD sORF	B_cell, Brain, Liver, MEF, Neutrophil, Testis
846658	36	CTG ...	LFC ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Downstream NMD sORF	Liver
459394	135	TTG ...	LGP ...	Ribo-seq	TTG	strong	3	sORFs_org_Mouse	Alternative NMD Overlapping sORF Upstream	B_cell, Liver
327713	141	CTG ...	LTA ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	Downstream NMD Overlapping sORF	B_cell, Brain, Liver, Neutrophil
9739	75	ATG ...	MKF ...	Ribo-seq	ATG	moderate	6	sORFs_org_Mouse	Downstream NMD sORF	B_cell, Brain, Liver, MEF, Neutrophil
1040356	36	GTG ...	VCA ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative NMD sORF Upstream	Neutrophil
1040108	60	ATG ...	MTW ...	Ribo-seq	ATG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Neutrophil
25852	51	GTG ...	VKK ...	Ribo-seq	GTG		7	sORFs_org_Mouse	Alternative Downstream NMD sORF	B_cell, Brain, Liver, MEF, Neutrophil, Testis
9833	60	CTG ...	LLL ...	Ribo-seq	CTG		7	sORFs_org_Mouse	InCDS NMD Overlapping sORF	B_cell, Brain, Liver, MEF, Neutrophil
25389	39	TTG ...	LFF ...	Ribo-seq	TTG		7	sORFs_org_Mouse	InCDS NMD Overlapping sORF	B_cell, Brain, Liver, MEF, Neutrophil
25562	93	GTG ...	VDM ...	Ribo-seq	GTG		8	sORFs_org_Mouse	Alternative Downstream NMD sORF	B_cell, Brain, Liver, MEF, Neutrophil
25760	36	GTG ...	VQL ...	Ribo-seq	GTG		7	sORFs_org_Mouse	InCDS NMD Overlapping sORF	B_cell, Brain, Liver, MEF, Neutrophil
9715	57	TTG ...	LLS ...	Ribo-seq	TTG		7	sORFs_org_Mouse	InCDS NMD Overlapping sORF	B_cell, Brain, Liver, MEF, Neutrophil
664722	51	TTG ...	LTV ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Liver
1697665	117	TTG ...	LGW ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Downstream NMD sORF	MEF
460254	66	CTG ...	LWT ...	Ribo-seq	CTG	weak	5	sORFs_org_Mouse	Downstream NMD sORF	B_cell, Brain, MEF, Neutrophil
25888	54	CTG ...	LSE ...	Ribo-seq	CTG		7	sORFs_org_Mouse	InCDS NMD Overlapping sORF	B_cell, Brain, Liver, MEF, Neutrophil
1040004	102	GTG ...	VVA ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Downstream NMD sORF	MEF, Neutrophil
9965	81	ATG ...	MAM ...	Ribo-seq	ATG	strong	5	sORFs_org_Mouse	Downstream NMD sORF	B_cell, Brain, MEF, Neutrophil
25758	84	CTG ...	LCK ...	Ribo-seq	CTG		8	sORFs_org_Mouse	Alternative Downstream NMD sORF	B_cell, Brain, Liver, MEF, Neutrophil
458591	99	GTG ...	VFK ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	Alternative NMD Overlapping sORF Upstream	B_cell, Liver
1039786	36	CTG ...	LKQ ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Downstream NMD sORF	Brain, MEF, Neutrophil
24776	72	CTG ...	LSI ...	Ribo-seq	CTG		9	sORFs_org_Mouse	Alternative Downstream NMD sORF	B_cell, Brain, Liver, MEF, Neutrophil, Testis
325463	108	ATG ...	MRQ ...	Ribo-seq	ATG	moderate	8	sORFs_org_Mouse Johnstone2016	Downstream NMD sORF	B_cell, Brain, Glioma, Liver, MEF, MESC, Neutrophil
25770	147	GTG ...	VYK ...	Ribo-seq	GTG		9	sORFs_org_Mouse	Alternative Downstream NMD sORF	B_cell, Brain, Liver, MEF, Neutrophil, Testis
25440	96	ATG ...	MLL ...	Ribo-seq	ATG		8	sORFs_org_Mouse	InCDS NMD Overlapping sORF	B_cell, Brain, Liver, MEF, Neutrophil
9624	72	GTG ...	VDL ...	Ribo-seq	GTG		7	sORFs_org_Mouse	InCDS NMD Overlapping sORF	B_cell, Brain, Liver, MEF, Neutrophil

25991

ENSMUST00000163070

Psma6-204

protein_coding

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
460922	96	GTG ...	VDL ...	Ribo-seq	GTG		6	sORFs_org_Mouse	InCDS Overlapping sORF	E14, MEF, Neutrophil, v6-5
25440	96	ATG ...	MLL ...	Ribo-seq	ATG		7	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, E14, MEF, NSC, v6-5
1297745	102	AAG ...	KCT ...	Ribo-seq	AAG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
25990	60	GTG ...	VQL ...	Ribo-seq	GTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	NSC, Testis
325463	108	ATG ...	MRQ ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse	InCDS Overlapping sORF	E14, NSC, v6-5
9833	60	CTG ...	LLL ...	Ribo-seq	CTG		5	sORFs_org_Mouse	InCDS Overlapping sORF	E14, MEF, NSC, v6-5
461415	84	CTG ...	LLL ...	Ribo-seq	CTG		6	sORFs_org_Mouse	InCDS Overlapping sORF	E14, MEF, Neutrophil, v6-5
939028	66	ATC ...	ICC ...	Ribo-seq	ATC		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
25760	36	GTG ...	VQL ...	Ribo-seq	GTG		4	sORFs_org_Mouse	InCDS Overlapping sORF	E14, MEF, NSC, v6-5
461355	78	CTG ...	LSE ...	Ribo-seq	CTG		5	sORFs_org_Mouse	InCDS Overlapping sORF	E14, MEF, Neutrophil, v6-5
460254	66	CTG ...	LWT ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
326546	42	CTG ...	LCS ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, MEF, NSC
460670	81	TTG ...	LLS ...	Ribo-seq	TTG		6	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, E14, MEF, Neutrophil, v6-5
939080	30	ATT ...	IGH ...	Ribo-seq	ATT		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
939325	105	AGG ...	RQL ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
329873	87	TTG ...	LIG ...	Ribo-seq	TTG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, Liver, MEF, NSC
9768	33	TTG ...	LIG ...	Ribo-seq	TTG		7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, Liver, MEF, NSC
9715	57	TTG ...	LLS ...	Ribo-seq	TTG		6	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, E14, MEF, NSC, v6-5
25888	54	CTG ...	LSE ...	Ribo-seq	CTG		5	sORFs_org_Mouse	InCDS Overlapping sORF	E14, MEF, NSC, v6-5
939414	75	AGG ...	RVD ...	Ribo-seq	AGG		2	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, E14
1298968	51	AGG ...	RKG ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
327713	141	CTG ...	LTA ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
939023	54	TTG ...	LKI ...	Ribo-seq	TTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
940934	84	ATT ...	IGH ...	Ribo-seq	ATT		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
9739	75	ATG ...	MKF ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, E14, MEF
329827	63	TTG ...	LKI ...	Ribo-seq	TTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
940127	36	AAG ...	KHW ...	Ribo-seq	AAG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
1345711	120	ATG ...	MKS ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
9965	81	ATG ...	MAM ...	Ribo-seq	ATG	strong	4	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, E14, MEF, v6-5
330355	120	ATG ...	MLL ...	Ribo-seq	ATG		9	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, Brain, E14, MEF, Neutrophil, v6-5
940717	99	AGG ...	RVD ...	Ribo-seq	AGG		2	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, E14
9624	72	GTG ...	VDL ...	Ribo-seq	GTG		5	sORFs_org_Mouse	InCDS Overlapping sORF	E14, MEF, NSC, v6-5

3244987

UNKNOWN_TRANSCRIPT

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
325463	108	ATG ...	MRQ ...	Predicted	ATG		1	Samandi2017	sORF
1345711	120	ATG ...	MKS ...	Predicted	ATG		1	Samandi2017	sORF
330355	120	ATG ...	MLL ...	Predicted	ATG		1	Samandi2017	sORF

25390

ENSMUST00000162972

Psma6-203

processed_transcript

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
460254	66	CTG ...	LWT ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	ncRNA sORF	3T3
25758	84	CTG ...	LCK ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	Liver, Testis
9965	81	ATG ...	MAM ...	Ribo-seq	ATG	strong	1	sORFs_org_Mouse	ncRNA sORF	3T3
25894	147	TTG ...	LKL ...	Ribo-seq	TTG		3	sORFs_org_Mouse	ncRNA sORF	3T3, Liver, Testis
9624	72	GTG ...	VDL ...	Ribo-seq	GTG		3	sORFs_org_Mouse	ncRNA sORF	Brain, Liver, Testis
321451	111	TTG ...	LFF ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	3T3
9833	60	CTG ...	LLL ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	Liver, Testis
9715	57	TTG ...	LLS ...	Ribo-seq	TTG		3	sORFs_org_Mouse	ncRNA sORF	3T3, Liver, Testis
25389	39	TTG ...	LFF ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	Testis
25760	36	GTG ...	VQL ...	Ribo-seq	GTG		3	sORFs_org_Mouse	ncRNA sORF	3T3, Liver, Testis
25440	96	ATG ...	MLL ...	Ribo-seq	ATG		3	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, Testis
325463	108	ATG ...	MRQ ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	ncRNA sORF	3T3
25562	93	GTG ...	VDM ...	Ribo-seq	GTG		3	sORFs_org_Mouse	ncRNA sORF	3T3, Liver, Testis
326546	42	CTG ...	LCS ...	Ribo-seq	CTG		3	sORFs_org_Mouse	ncRNA sORF	3T3, Liver
327713	141	CTG ...	LTA ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	ncRNA sORF	3T3, Brain
25888	54	CTG ...	LSE ...	Ribo-seq	CTG		3	sORFs_org_Mouse	ncRNA sORF	3T3, Liver, Testis

ORFs

60 ORFs
4 known transcripts
116 ORF to known transcript associations

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF Length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Start codon

The start codon sequence of the ORF.

ORF annotations

A comma-separated list of all the annotations computed by our algorithm for the ORF. This list includes the annotations computed for the ORF for all transcripts. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of all the cell types in which the ORF has already been identified.

Transcripts

Display all the transcripts related to the entry.

327713

141

CTG...

LTA...

CTG

InCDS
Overlapping
sORF
Downstream
NMD
ncRNA

R1E, Spleen_B_cell, B_cell,
Brain, Liver, Neutrophil,
MEF, 3T3

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
9625	ENSMUST00000021412	Psma6-201	protein_coding	Ribo-seq	weak	2	sORFs_org_Mouse
24430	ENSMUST00000162711	Psma6-202	nonsense_mediated_decay	Ribo-seq	weak	4	sORFs_org_Mouse
25991	ENSMUST00000163070	Psma6-204	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse
25390	ENSMUST00000162972	Psma6-203	processed_transcript	Ribo-seq	weak	2	sORFs_org_Mouse

25280

GTG...

VVF...

GTG

Downstream
NMD
sORF

B_cell, Brain, MEF,
Neutrophil, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
24430	ENSMUST00000162711	Psma6-202	nonsense_mediated_decay	Ribo-seq		5	sORFs_org_Mouse

25028

GTG...

VFF...

GTG

Alternative
Downstream
NMD
sORF

Brain, Liver, MEF,
Neutrophil, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
24430	ENSMUST00000162711	Psma6-202	nonsense_mediated_decay	Ribo-seq		7	sORFs_org_Mouse

460922

GTG...

VDL...

GTG

InCDS
Overlapping
sORF

E14, MEF, Neutrophil,
v6-5, 3T3, B_cell,
BMDC, Liver, R1E,
Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
25991	ENSMUST00000163070	Psma6-204	protein_coding	Ribo-seq		6	sORFs_org_Mouse
9625	ENSMUST00000021412	Psma6-201	protein_coding	Ribo-seq		7	sORFs_org_Mouse

9833

CTG...

LLL...

CTG

InCDS
Overlapping
sORF
ncRNA
NMD

3T3, BMDC, R1E,
Skin_tumor, Spleen_B_cell, E14,
MEF, NSC, v6-5,
Liver, Testis, B_cell,
Brain, Neutrophil

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
9625	ENSMUST00000021412	Psma6-201	protein_coding	Ribo-seq		5	sORFs_org_Mouse
25991	ENSMUST00000163070	Psma6-204	protein_coding	Ribo-seq		5	sORFs_org_Mouse
25390	ENSMUST00000162972	Psma6-203	processed_transcript	Ribo-seq		2	sORFs_org_Mouse
24430	ENSMUST00000162711	Psma6-202	nonsense_mediated_decay	Ribo-seq		7	sORFs_org_Mouse

9768

TTG...

LIG...

TTG

Alternative
Downstream
NMD
sORF
InCDS
Overlapping

B_cell, Brain, Liver,
MEF, Neutrophil, E14,
NSC, 3T3, R1E,
Skin_tumor, Spleen_B_cell, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
24430	ENSMUST00000162711	Psma6-202	nonsense_mediated_decay	Ribo-seq		6	sORFs_org_Mouse
25991	ENSMUST00000163070	Psma6-204	protein_coding	Ribo-seq		7	sORFs_org_Mouse
9625	ENSMUST00000021412	Psma6-201	protein_coding	Ribo-seq		5	sORFs_org_Mouse

25440

ATG...

MLL...

ATG

InCDS
Overlapping
sORF
ncRNA
NMD

BMDC, E14, MEF,
NSC, v6-5, R1E,
Spleen_B_cell, 3T3, Brain,
Testis, B_cell, Liver,
Neutrophil

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
25991	ENSMUST00000163070	Psma6-204	protein_coding	Ribo-seq		7	sORFs_org_Mouse
9625	ENSMUST00000021412	Psma6-201	protein_coding	Ribo-seq		3	sORFs_org_Mouse
25390	ENSMUST00000162972	Psma6-203	processed_transcript	Ribo-seq		3	sORFs_org_Mouse
24430	ENSMUST00000162711	Psma6-202	nonsense_mediated_decay	Ribo-seq		8	sORFs_org_Mouse

321971

108

GTG...

VQT...

GTG

Alternative
NMD
Overlapping
sORF
Upstream

B_cell, Brain, Liver,
3T3, R1E, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
24430	ENSMUST00000162711	Psma6-202	nonsense_mediated_decay	Ribo-seq	moderate	4	sORFs_org_Mouse
9625	ENSMUST00000021412	Psma6-201	protein_coding	Ribo-seq	moderate	3	sORFs_org_Mouse

1297745

102

AAG...

KCT...

AAG

Alternative
InCDS
Overlapping
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
25991	ENSMUST00000163070	Psma6-204	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse

25990

GTG...

VQL...

GTG

InCDS
Overlapping
sORF

NSC, Testis, 3T3,
B_cell, Liver, MEF,
Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
25991	ENSMUST00000163070	Psma6-204	protein_coding	Ribo-seq		2	sORFs_org_Mouse
9625	ENSMUST00000021412	Psma6-201	protein_coding	Ribo-seq		5	sORFs_org_Mouse

325463

108

ATG...

MRQ...

ATG

InCDS
Overlapping
sORF
Downstream
NMD
ncRNA

E14, NSC, v6-5,
R1E, Spleen_B_cell,
B_cell, Brain, Glioma,
Liver, MEF, MESC,
Neutrophil, 3T3

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
25991	ENSMUST00000163070	Psma6-204	protein_coding	Ribo-seq	moderate	3	sORFs_org_Mouse
3244987	UNKNOWN_TRANSCRIPT			Predicted		1	Samandi2017
9625	ENSMUST00000021412	Psma6-201	protein_coding	Ribo-seq	moderate	2	sORFs_org_Mouse
24430	ENSMUST00000162711	Psma6-202	nonsense_mediated_decay	Ribo-seq	moderate	8	sORFs_org_Mouse Johnstone2016
25390	ENSMUST00000162972	Psma6-203	processed_transcript	Ribo-seq	moderate	1	sORFs_org_Mouse

1345711

120

ATG...

MKS...

ATG

Alternative
Downstream
NMD
sORF
InCDS
Overlapping

Glioma, Liver, MEF,
MESC, E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
24430	ENSMUST00000162711	Psma6-202	nonsense_mediated_decay	Ribo-seq	weak	1	Johnstone2016
3244987	UNKNOWN_TRANSCRIPT			Predicted		1	Samandi2017
25991	ENSMUST00000163070	Psma6-204	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse

460254

CTG...

LWT...

CTG

ncRNA
sORF
InCDS
Overlapping
Downstream
NMD

3T3, MEF, B_cell,
Brain, Neutrophil, R1E,
Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
25390	ENSMUST00000162972	Psma6-203	processed_transcript	Ribo-seq	weak	1	sORFs_org_Mouse
25991	ENSMUST00000163070	Psma6-204	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse
24430	ENSMUST00000162711	Psma6-202	nonsense_mediated_decay	Ribo-seq	weak	5	sORFs_org_Mouse
9625	ENSMUST00000021412	Psma6-201	protein_coding	Ribo-seq	weak	2	sORFs_org_Mouse

321451

111

TTG...

LFF...

TTG

InCDS
NMD
Overlapping
sORF
ncRNA

B_cell, Brain, Liver,
MEF, Neutrophil, 3T3

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
24430	ENSMUST00000162711	Psma6-202	nonsense_mediated_decay	Ribo-seq		9	sORFs_org_Mouse
25390	ENSMUST00000162972	Psma6-203	processed_transcript	Ribo-seq		1	sORFs_org_Mouse

461415

CTG...

LLL...

CTG

InCDS
Overlapping
sORF

E14, MEF, Neutrophil,
v6-5, 3T3, B_cell,
BMDC, Liver, R1E,
Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
25991	ENSMUST00000163070	Psma6-204	protein_coding	Ribo-seq		6	sORFs_org_Mouse
9625	ENSMUST00000021412	Psma6-201	protein_coding	Ribo-seq		7	sORFs_org_Mouse

9624

GTG...

VDL...

GTG

InCDS
Overlapping
sORF
ncRNA
NMD

3T3, BMDC, R1E,
Skin_tumor, Spleen_B_cell, Brain,
Liver, Testis, B_cell,
MEF, Neutrophil, E14,
NSC, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
9625	ENSMUST00000021412	Psma6-201	protein_coding	Ribo-seq		5	sORFs_org_Mouse
25390	ENSMUST00000162972	Psma6-203	processed_transcript	Ribo-seq		3	sORFs_org_Mouse
24430	ENSMUST00000162711	Psma6-202	nonsense_mediated_decay	Ribo-seq		7	sORFs_org_Mouse
25991	ENSMUST00000163070	Psma6-204	protein_coding	Ribo-seq		5	sORFs_org_Mouse

939028

ATC...

ICC...

ATC

Alternative
InCDS
Overlapping
sORF

BMDC, E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
25991	ENSMUST00000163070	Psma6-204	protein_coding	Ribo-seq		2	sORFs_org_Mouse

25760

GTG...

VQL...

GTG

InCDS
Overlapping
sORF
NMD
ncRNA

E14, MEF, NSC,
v6-5, R1E, Spleen_B_cell,
B_cell, Brain, Liver,
Neutrophil, 3T3, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
25991	ENSMUST00000163070	Psma6-204	protein_coding	Ribo-seq		4	sORFs_org_Mouse
9625	ENSMUST00000021412	Psma6-201	protein_coding	Ribo-seq		2	sORFs_org_Mouse
24430	ENSMUST00000162711	Psma6-202	nonsense_mediated_decay	Ribo-seq		7	sORFs_org_Mouse
25390	ENSMUST00000162972	Psma6-203	processed_transcript	Ribo-seq		3	sORFs_org_Mouse

326546

CTG...

LCS...

CTG

Alternative
InCDS
NMD
Overlapping
sORF
ncRNA

B_cell, Brain, MEF,
BMDC, NSC, R1E,
v6-5, 3T3, Liver

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
24430	ENSMUST00000162711	Psma6-202	nonsense_mediated_decay	Ribo-seq		5	sORFs_org_Mouse
25991	ENSMUST00000163070	Psma6-204	protein_coding	Ribo-seq		4	sORFs_org_Mouse
9625	ENSMUST00000021412	Psma6-201	protein_coding	Ribo-seq		3	sORFs_org_Mouse
25390	ENSMUST00000162972	Psma6-203	processed_transcript	Ribo-seq		3	sORFs_org_Mouse

975648

ATA...

IAG...

ATA

Alternative
Overlapping
sORF
Upstream

MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
9625	ENSMUST00000021412	Psma6-201	protein_coding	Ribo-seq	strong	1	sORFs_org_Mouse

25758

CTG...

LCK...

CTG

ncRNA
sORF
Alternative
Downstream
NMD

Liver, Testis, B_cell,
Brain, MEF, Neutrophil

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
25390	ENSMUST00000162972	Psma6-203	processed_transcript	Ribo-seq		2	sORFs_org_Mouse
24430	ENSMUST00000162711	Psma6-202	nonsense_mediated_decay	Ribo-seq		8	sORFs_org_Mouse

9965

ATG...

MAM...

ATG

InCDS
Overlapping
sORF
ncRNA
Downstream
NMD

R1E, Skin_tumor, Spleen_B_cell,
3T3, B_cell, Brain,
MEF, Neutrophil, BMDC,
E14, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
9625	ENSMUST00000021412	Psma6-201	protein_coding	Ribo-seq	strong	3	sORFs_org_Mouse
25390	ENSMUST00000162972	Psma6-203	processed_transcript	Ribo-seq	strong	1	sORFs_org_Mouse
24430	ENSMUST00000162711	Psma6-202	nonsense_mediated_decay	Ribo-seq	strong	5	sORFs_org_Mouse
25991	ENSMUST00000163070	Psma6-204	protein_coding	Ribo-seq	strong	4	sORFs_org_Mouse

461355

CTG...

LSE...

CTG

InCDS
Overlapping
sORF

3T3, B_cell, BMDC,
Liver, MEF, R1E,
Spleen_B_cell, E14, Neutrophil,
v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
9625	ENSMUST00000021412	Psma6-201	protein_coding	Ribo-seq		7	sORFs_org_Mouse
25991	ENSMUST00000163070	Psma6-204	protein_coding	Ribo-seq		5	sORFs_org_Mouse

846594

TTG...

LLI...

TTG

Downstream
NMD
sORF

Liver, MEF, Neutrophil

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
24430	ENSMUST00000162711	Psma6-202	nonsense_mediated_decay	Ribo-seq	moderate	4	sORFs_org_Mouse

324155

120

GTG...

VCY...

GTG

Alternative
NMD
Overlapping
sORF
Upstream

B_cell, Brain, Liver,
3T3, R1E, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
24430	ENSMUST00000162711	Psma6-202	nonsense_mediated_decay	Ribo-seq	weak	4	sORFs_org_Mouse
9625	ENSMUST00000021412	Psma6-201	protein_coding	Ribo-seq	weak	3	sORFs_org_Mouse

25477

ATG...

MLV...

ATG

Alternative
Downstream
NMD
sORF

Brain, MEF, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
24430	ENSMUST00000162711	Psma6-202	nonsense_mediated_decay	Ribo-seq		5	sORFs_org_Mouse

330355

120

ATG...

MLL...

ATG

InCDS
Overlapping
sORF

3T3, B_cell, BMDC,
Liver, MEF, R1E,
Spleen_B_cell, Brain,
E14, Neutrophil, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
9625	ENSMUST00000021412	Psma6-201	protein_coding	Ribo-seq		7	sORFs_org_Mouse
3244987	UNKNOWN_TRANSCRIPT			Predicted		1	Samandi2017
25991	ENSMUST00000163070	Psma6-204	protein_coding	Ribo-seq		9	sORFs_org_Mouse

846019

CTG...

LIF...

CTG

Downstream
NMD
sORF

Liver, MEF, Neutrophil

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
24430	ENSMUST00000162711	Psma6-202	nonsense_mediated_decay	Ribo-seq	weak	4	sORFs_org_Mouse

460670

TTG...

LLS...

TTG

InCDS
Overlapping
sORF

BMDC, E14, MEF,
Neutrophil, v6-5, 3T3,
B_cell, Liver, R1E,
Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
25991	ENSMUST00000163070	Psma6-204	protein_coding	Ribo-seq		6	sORFs_org_Mouse
9625	ENSMUST00000021412	Psma6-201	protein_coding	Ribo-seq		7	sORFs_org_Mouse

25894

147

TTG...

LKL...

TTG

Downstream
NMD
Overlapping
sORF
ncRNA

B_cell, Brain, Liver,
MEF, Neutrophil, 3T3,
Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
24430	ENSMUST00000162711	Psma6-202	nonsense_mediated_decay	Ribo-seq		7	sORFs_org_Mouse
25390	ENSMUST00000162972	Psma6-203	processed_transcript	Ribo-seq		3	sORFs_org_Mouse

939080

ATT...

IGH...

ATT

Alternative
InCDS
Overlapping
sORF

BMDC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
25991	ENSMUST00000163070	Psma6-204	protein_coding	Ribo-seq		1	sORFs_org_Mouse

939325

105

AGG...

RQL...

AGG

InCDS
Overlapping
sORF

BMDC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
25991	ENSMUST00000163070	Psma6-204	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse

24429

TTG...

LVF...

TTG

Alternative
Downstream
NMD
sORF

Brain, MEF, Neutrophil,
Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
24430	ENSMUST00000162711	Psma6-202	nonsense_mediated_decay	Ribo-seq		6	sORFs_org_Mouse

24924

CTG...

LST...

CTG

Alternative
Downstream
NMD
sORF

B_cell, Brain, Liver,
MEF, Neutrophil, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
24430	ENSMUST00000162711	Psma6-202	nonsense_mediated_decay	Ribo-seq		9	sORFs_org_Mouse

846658

CTG...

LFC...

CTG

Downstream
NMD
sORF

Liver

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
24430	ENSMUST00000162711	Psma6-202	nonsense_mediated_decay	Ribo-seq	weak	2	sORFs_org_Mouse

459394

135

TTG...

LGP...

TTG

Alternative
NMD
Overlapping
sORF
Upstream

B_cell, Liver, 3T3,
Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
24430	ENSMUST00000162711	Psma6-202	nonsense_mediated_decay	Ribo-seq	strong	3	sORFs_org_Mouse
9625	ENSMUST00000021412	Psma6-201	protein_coding	Ribo-seq	strong	2	sORFs_org_Mouse

9739

ATG...

MKF...

ATG

Downstream
NMD
sORF
InCDS
Overlapping

B_cell, Brain, Liver,
MEF, Neutrophil, 3T3,
R1E, Skin_tumor, Spleen_B_cell,
BMDC, E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
24430	ENSMUST00000162711	Psma6-202	nonsense_mediated_decay	Ribo-seq	moderate	6	sORFs_org_Mouse
9625	ENSMUST00000021412	Psma6-201	protein_coding	Ribo-seq	moderate	4	sORFs_org_Mouse
25991	ENSMUST00000163070	Psma6-204	protein_coding	Ribo-seq	moderate	3	sORFs_org_Mouse

1040356

GTG...

VCA...

GTG

Alternative
NMD
sORF
Upstream

Neutrophil

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
24430	ENSMUST00000162711	Psma6-202	nonsense_mediated_decay	Ribo-seq	moderate	1	sORFs_org_Mouse

329873

TTG...

LIG...

TTG

Alternative
InCDS
Overlapping
sORF

Brain, Liver, MEF,
NSC, 3T3, R1E,
Spleen_B_cell, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
25991	ENSMUST00000163070	Psma6-204	protein_coding	Ribo-seq		6	sORFs_org_Mouse
9625	ENSMUST00000021412	Psma6-201	protein_coding	Ribo-seq		4	sORFs_org_Mouse

1040108

ATG...

MTW...

ATG

InCDS
NMD
Overlapping
sORF

Neutrophil

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
24430	ENSMUST00000162711	Psma6-202	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

25852

GTG...

VKK...

GTG

Alternative
Downstream
NMD
sORF

B_cell, Brain, Liver,
MEF, Neutrophil, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
24430	ENSMUST00000162711	Psma6-202	nonsense_mediated_decay	Ribo-seq		7	sORFs_org_Mouse

25389

TTG...

LFF...

TTG

InCDS
NMD
Overlapping
sORF
ncRNA

B_cell, Brain, Liver,
MEF, Neutrophil, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
24430	ENSMUST00000162711	Psma6-202	nonsense_mediated_decay	Ribo-seq		7	sORFs_org_Mouse
25390	ENSMUST00000162972	Psma6-203	processed_transcript	Ribo-seq		1	sORFs_org_Mouse

25562

GTG...

VDM...

GTG

Alternative
Downstream
NMD
sORF
ncRNA

B_cell, Brain, Liver,
MEF, Neutrophil, 3T3,
Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
24430	ENSMUST00000162711	Psma6-202	nonsense_mediated_decay	Ribo-seq		8	sORFs_org_Mouse
25390	ENSMUST00000162972	Psma6-203	processed_transcript	Ribo-seq		3	sORFs_org_Mouse

9715

TTG...

LLS...

TTG

InCDS
Overlapping
sORF
NMD
ncRNA

BMDC, E14, MEF,
NSC, v6-5, B_cell,
Brain, Liver, Neutrophil,
3T3, Testis, R1E,
Skin_tumor, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
25991	ENSMUST00000163070	Psma6-204	protein_coding	Ribo-seq		6	sORFs_org_Mouse
24430	ENSMUST00000162711	Psma6-202	nonsense_mediated_decay	Ribo-seq		7	sORFs_org_Mouse
25390	ENSMUST00000162972	Psma6-203	processed_transcript	Ribo-seq		3	sORFs_org_Mouse
9625	ENSMUST00000021412	Psma6-201	protein_coding	Ribo-seq		4	sORFs_org_Mouse

25888

CTG...

LSE...

CTG

InCDS
Overlapping
sORF
NMD
ncRNA

BMDC, R1E, Spleen_B_cell,
E14, MEF, NSC,
v6-5, B_cell, Brain,
Liver, Neutrophil, 3T3,
Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
9625	ENSMUST00000021412	Psma6-201	protein_coding	Ribo-seq		3	sORFs_org_Mouse
25991	ENSMUST00000163070	Psma6-204	protein_coding	Ribo-seq		5	sORFs_org_Mouse
24430	ENSMUST00000162711	Psma6-202	nonsense_mediated_decay	Ribo-seq		7	sORFs_org_Mouse
25390	ENSMUST00000162972	Psma6-203	processed_transcript	Ribo-seq		3	sORFs_org_Mouse

939414

AGG...

RVD...

AGG

InCDS
Overlapping
sORF

BMDC, E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
25991	ENSMUST00000163070	Psma6-204	protein_coding	Ribo-seq		2	sORFs_org_Mouse

1298968

AGG...

RKG...

AGG

Alternative
InCDS
Overlapping
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
25991	ENSMUST00000163070	Psma6-204	protein_coding	Ribo-seq		1	sORFs_org_Mouse

939023

TTG...

LKI...

TTG

InCDS
Overlapping
sORF

BMDC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
25991	ENSMUST00000163070	Psma6-204	protein_coding	Ribo-seq		1	sORFs_org_Mouse

940934

ATT...

IGH...

ATT

Alternative
InCDS
Overlapping
sORF

BMDC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
25991	ENSMUST00000163070	Psma6-204	protein_coding	Ribo-seq		1	sORFs_org_Mouse

664722

TTG...

LTV...

TTG

Alternative
InCDS
NMD
Overlapping
sORF

Liver, 3T3, MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
24430	ENSMUST00000162711	Psma6-202	nonsense_mediated_decay	Ribo-seq	moderate	2	sORFs_org_Mouse
9625	ENSMUST00000021412	Psma6-201	protein_coding	Ribo-seq	moderate	2	sORFs_org_Mouse

458591

GTG...

VFK...

GTG

Alternative
Overlapping
sORF
Upstream
NMD

3T3, R1E, Spleen_B_cell,
B_cell, Liver

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
9625	ENSMUST00000021412	Psma6-201	protein_coding	Ribo-seq	moderate	3	sORFs_org_Mouse
24430	ENSMUST00000162711	Psma6-202	nonsense_mediated_decay	Ribo-seq	moderate	3	sORFs_org_Mouse

1697665

117

TTG...

LGW...

TTG

Downstream
NMD
sORF

MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
24430	ENSMUST00000162711	Psma6-202	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

1040004

102

GTG...

VVA...

GTG

Downstream
NMD
sORF

MEF, Neutrophil

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
24430	ENSMUST00000162711	Psma6-202	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse

1039786

CTG...

LKQ...

CTG

Downstream
NMD
sORF

Brain, MEF, Neutrophil

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
24430	ENSMUST00000162711	Psma6-202	nonsense_mediated_decay	Ribo-seq	weak	3	sORFs_org_Mouse

329827

TTG...

LKI...

TTG

InCDS
Overlapping
sORF

Brain, 3T3, BMDC,
MEF, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
25991	ENSMUST00000163070	Psma6-204	protein_coding	Ribo-seq		1	sORFs_org_Mouse
9625	ENSMUST00000021412	Psma6-201	protein_coding	Ribo-seq		4	sORFs_org_Mouse

24776

CTG...

LSI...

CTG

Alternative
Downstream
NMD
sORF

B_cell, Brain, Liver,
MEF, Neutrophil, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
24430	ENSMUST00000162711	Psma6-202	nonsense_mediated_decay	Ribo-seq		9	sORFs_org_Mouse

460061

CTG...

LQL...

CTG

InCDS
Overlapping
sORF

3T3, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
9625	ENSMUST00000021412	Psma6-201	protein_coding	Ribo-seq	moderate	2	sORFs_org_Mouse

940127

AAG...

KHW...

AAG

Alternative
InCDS
Overlapping
sORF

BMDC, E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
25991	ENSMUST00000163070	Psma6-204	protein_coding	Ribo-seq		2	sORFs_org_Mouse

25770

147

GTG...

VYK...

GTG

Alternative
Downstream
NMD
sORF

B_cell, Brain, Liver,
MEF, Neutrophil, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
24430	ENSMUST00000162711	Psma6-202	nonsense_mediated_decay	Ribo-seq		9	sORFs_org_Mouse

940717

AGG...

RVD...

AGG

InCDS
Overlapping
sORF

BMDC, E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
25991	ENSMUST00000163070	Psma6-204	protein_coding	Ribo-seq		2	sORFs_org_Mouse

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