Metam
ORF

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Gene

Gene

ID CARD

ID

NCBI:23881

Aliases

AA409541
E430034L04Rik, ENSMUSG00000029405, G3BP
G3bp2, MGI:2442040, mKIAA0660
NCBI:23881, OFF:G3bp2

Chromosome

5

Transcripts

183 ORFs
10 known transcripts
491 ORF to known transcript associations

MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

ORFs

Display all the transcripts related to the entry.

166972 ENSMUST00000202352 G3bp2-210 processed_transcript
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

62462 42

CTG ...

LLS ...

Ribo-seq
CTG

3 sORFs_org_Mouse
    ncRNA
    sORF
Brain, E14, v6-5
166971 84

ATG ...

MFT ...

Ribo-seq
ATG

5 sORFs_org_Mouse
    ncRNA
    sORF
Brain, E14, MEF,
v6-5
64685 114

TTG ...

LML ...

Ribo-seq
TTG

4 sORFs_org_Mouse
    ncRNA
    sORF
Brain, E14, Neutrophil,
v6-5
168438 123

ATG ...

MLF ...

Ribo-seq
ATG

4 sORFs_org_Mouse
    ncRNA
    sORF
Brain, MEF, v6-5
185294 60

ATG ...

MKM ...

Ribo-seq
ATG

4 sORFs_org_Mouse
    ncRNA
    sORF
Brain, MEF, v6-5
170584 54

CTG ...

LFL ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    ncRNA
    sORF
Brain, v6-5
181113 120

TTG ...

LFF ...

Ribo-seq
TTG

5 sORFs_org_Mouse
    ncRNA
    sORF
Brain, E14, MEF,
v6-5
832692 42

GTG ...

VIL ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    ncRNA
    sORF
MEF
64466 78

GTG ...

VYG ...

Ribo-seq
GTG

4 sORFs_org_Mouse
    ncRNA
    sORF
Brain, E14, Neutrophil,
v6-5
65278 33

CTG ...

LLL ...

Ribo-seq
CTG

4 sORFs_org_Mouse
    ncRNA
    sORF
Brain, E14, Neutrophil,
v6-5
180835 114

CTG ...

LCC ...

Ribo-seq
CTG

5 sORFs_org_Mouse
    ncRNA
    sORF
Brain, MEF, NSC,
v6-5
178967 81

CTG ...

LPP ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    ncRNA
    sORF
Brain, v6-5
179998 36

CTG ...

LSF ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    ncRNA
    sORF
Brain, MEF
178388 54

CTG ...

LNL ...

Ribo-seq
CTG

weak

1 sORFs_org_Mouse
    ncRNA
    sORF
Brain
1660392 66

GTG ...

VFG ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    ncRNA
    sORF
MEF
65369 93

ATG ...

MKW ...

Ribo-seq
ATG

moderate

2 sORFs_org_Mouse
    ncRNA
    sORF
Brain, v6-5
175600 60

GTG ...

VVL ...

Ribo-seq
GTG

2 sORFs_org_Mouse
    ncRNA
    sORF
Brain, v6-5
62591 39

CTG ...

LSL ...

Ribo-seq
CTG

3 sORFs_org_Mouse
    ncRNA
    sORF
Brain, E14, v6-5
184103 93

GTG ...

VEE ...

Ribo-seq
GTG

6 sORFs_org_Mouse
    ncRNA
    sORF
Brain, MEF, Neutrophil,
NSC, v6-5
829388 45

TTG ...

LVI ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    ncRNA
    sORF
MEF
180934 54

ATG ...

MKC ...

Ribo-seq
ATG

4 sORFs_org_Mouse
    ncRNA
    sORF
Brain, MEF, v6-5
174148 48

CTG ...

LVS ...

Ribo-seq
CTG

3 sORFs_org_Mouse
    ncRNA
    sORF
Brain, E14, v6-5
518181 42

CTG ...

LSL ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    ncRNA
    sORF
MEF
171473 51

GTG ...

VQE ...

Ribo-seq
GTG

6 sORFs_org_Mouse
    ncRNA
    sORF
Brain, MEF, Neutrophil,
NSC, v6-5
1085922 132

TTG ...

LYF ...

Ribo-seq
TTG

2 sORFs_org_Mouse
    ncRNA
    sORF
E14, v6-5
832085 36

CTG ...

LNQ ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    ncRNA
    sORF
MEF
181858 42

CTG ...

LEF ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    ncRNA
    sORF
Brain, v6-5
171421 102

CTG ...

LFQ ...

Ribo-seq
CTG

5 sORFs_org_Mouse
    ncRNA
    sORF
Brain, E14, MEF,
v6-5
61991 111

ATG ...

MLS ...

Ribo-seq
ATG

4 sORFs_org_Mouse
    ncRNA
    sORF
Brain, E14, Neutrophil,
v6-5
173918 96

GTG ...

VTS ...

Ribo-seq
GTG

2 sORFs_org_Mouse
    ncRNA
    sORF
Brain, v6-5
1062672 162

CTG ...

LKP ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    ncRNA
    sORF
Neutrophil
517442 36

CTG ...

LSQ ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    ncRNA
    sORF
MEF
565620 48

ATG ...

MNL ...

Ribo-seq
ATG

weak

1 sORFs_org_Mouse
    ncRNA
    sORF
MEF
172294 75

ATG ...

MIC ...

Ribo-seq
ATG

4 sORFs_org_Mouse
    ncRNA
    sORF
E14, MEF, v6-5
172295 ENSMUST00000169094 G3bp2-204 protein_coding
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

178388 54

CTG ...

LNL ...

Ribo-seq
CTG

weak

4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Brain, R1E,
Spleen_B_cell
516986 42

GTG ...

VRA ...

Ribo-seq
GTG

2 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
3T3, Spleen_B_cell
177257 54

GTG ...

VDS ...

Ribo-seq
GTG

4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Liver, R1E,
Spleen_B_cell
185703 132

TTG ...

LVI ...

Ribo-seq
TTG

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Brain, R1E
522372 48

CTG ...

LCK ...

Ribo-seq
CTG

moderate

4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Brain, R1E,
Spleen_B_cell
189973 87

ATG ...

MFM ...

Ribo-seq
ATG

4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Brain, R1E,
Spleen_B_cell
191065 189

CTG ...

LFQ ...

Ribo-seq
CTG

4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Brain, R1E
173574 39

TTG ...

LVT ...

Ribo-seq
TTG

moderate

2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain, R1E
63948 54

GTG ...

VEW ...

Ribo-seq
GTG

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, R1E, Spleen_B_cell
61991 111

ATG ...

MLS ...

Ribo-seq
ATG

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, R1E, Spleen_B_cell
172694 45

ATG ...

MPV ...

Ribo-seq
ATG

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, R1E, Spleen_B_cell
67326 207

TTG ...

LFF ...

Ribo-seq
TTG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, R1E
520695 48

ATG ...

MSY ...

Ribo-seq
ATG

weak

4 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, Liver, R1E,
Spleen_B_cell
67372 147

ATG ...

MKM ...

Ribo-seq
ATG

4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Brain, R1E
190250 264

TTG ...

LRI ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
R1E
62478 105

CTG ...

LPE ...

Ribo-seq
CTG

moderate

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
R1E, Spleen_B_cell
570804 144

GTG ...

VAV ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
524454 96

ATG ...

MTL ...

Ribo-seq
ATG

3 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, R1E, Spleen_B_cell
174148 48

CTG ...

LVS ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
R1E, Spleen_B_cell
181858 42

CTG ...

LEF ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, R1E
1805627 282

ATG ...

MGV ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
R1E
182680 99

TTG ...

LWN ...

Ribo-seq
TTG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
517442 36

CTG ...

LSQ ...

Ribo-seq
CTG

moderate

3 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, R1E, Spleen_B_cell
61390 57

ATG ...

MVE ...

Ribo-seq
ATG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, R1E
67438 138

ATG ...

MLS ...

Ribo-seq
ATG

4 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, Brain, R1E,
Spleen_B_cell
187382 132

GTG ...

VRA ...

Ribo-seq
GTG

5 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
3T3, B_cell, Brain,
C2C12, Spleen_B_cell
524369 204

GTG ...

VCA ...

Ribo-seq
GTG

4 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
3T3, B_cell, MEF,
Spleen_B_cell
67003 186

CTG ...

LEF ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
R1E, Spleen_B_cell
170584 54

CTG ...

LFL ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, R1E
185294 60

ATG ...

MKM ...

Ribo-seq
ATG

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Brain, R1E
186481 69

ATG ...

MPV ...

Ribo-seq
ATG

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, R1E, Spleen_B_cell
521413 33

TTG ...

LMT ...

Ribo-seq
TTG

weak

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Spleen_B_cell
523133 99

TTG ...

LMT ...

Ribo-seq
TTG

3 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, R1E, Spleen_B_cell
190983 129

GTG ...

VIL ...

Ribo-seq
GTG

4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Brain, R1E,
Spleen_B_cell
175333 42

GTG ...

VIV ...

Ribo-seq
GTG

weak

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
R1E, Spleen_B_cell
524135 90

TTG ...

LQV ...

Ribo-seq
TTG

4 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, Liver, R1E,
Spleen_B_cell
180934 54

ATG ...

MKC ...

Ribo-seq
ATG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, R1E
524065 63

CTG ...

LPT ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
3T3, Spleen_B_cell
66948 75

CTG ...

LVS ...

Ribo-seq
CTG

4 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, Brain, R1E,
Spleen_B_cell
189515 81

ATG ...

MVE ...

Ribo-seq
ATG

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Brain, R1E
189549 51

CTG ...

LLL ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
177143 108

TTG ...

LET ...

Ribo-seq
TTG

strong

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, R1E, Spleen_B_cell
524665 45

GTG ...

VRA ...

Ribo-seq
GTG

2 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
3T3, Spleen_B_cell
190276 105

ATG ...

MAG ...

Ribo-seq
ATG

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, R1E, Spleen_B_cell
518181 42

CTG ...

LSL ...

Ribo-seq
CTG

moderate

2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, Spleen_B_cell
166971 84

ATG ...

MFT ...

Ribo-seq
ATG

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Brain, R1E
571733 33

GTG ...

VQS ...

Ribo-seq
GTG

2 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
3T3, B_cell
522816 48

TTG ...

LVL ...

Ribo-seq
TTG

strong

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Spleen_B_cell
521015 60

CTG ...

LPT ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
3T3, Spleen_B_cell
172854 45

CTG ...

LRG ...

Ribo-seq
CTG

4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Liver, R1E,
Spleen_B_cell
172294 75

ATG ...

MIC ...

Ribo-seq
ATG

4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Brain, R1E
186622 237

ATG ...

MTI ...

Ribo-seq
ATG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, R1E
565620 48

ATG ...

MNL ...

Ribo-seq
ATG

weak

2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, R1E
524667 102

TTG ...

LLM ...

Ribo-seq
TTG

3 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, R1E, Spleen_B_cell
62591 39

CTG ...

LSL ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, R1E
189567 57

CTG ...

LSL ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
67224 243

GTG ...

VDS ...

Ribo-seq
GTG

4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Brain, R1E,
Spleen_B_cell
175600 60

GTG ...

VVL ...

Ribo-seq
GTG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, R1E
62462 42

CTG ...

LLS ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, R1E
171421 102

CTG ...

LFQ ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, R1E
516498 42

TTG ...

LWF ...

Ribo-seq
TTG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Spleen_B_cell
66591 171

ATG ...

MFT ...

Ribo-seq
ATG

5 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Brain, R1E,
Spleen_B_cell
63003 81

ATG ...

MAG ...

Ribo-seq
ATG

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, R1E, Spleen_B_cell
520992 36

GTG ...

VTE ...

Ribo-seq
GTG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Spleen_B_cell
66447 234

CTG ...

LRG ...

Ribo-seq
CTG

4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Brain, R1E,
Spleen_B_cell
187960 255

ATG ...

MWV ...

Ribo-seq
ATG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, R1E
64056 129

ATG ...

MWK ...

Ribo-seq
ATG

weak

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, R1E, Spleen_B_cell
67149 105

CTG ...

LQA ...

Ribo-seq
CTG

7 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
3T3, B_cell, Brain,
Liver, MEF, R1E,
Spleen_B_cell
62445 63

ATG ...

MFM ...

Ribo-seq
ATG

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, R1E, Spleen_B_cell
573395 60

CTG ...

LLS ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
190509 141

ATG ...

MKC ...

Ribo-seq
ATG

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Brain, R1E
65701 39

GTG ...

VES ...

Ribo-seq
GTG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, R1E
517586 72

GTG ...

VLG ...

Ribo-seq
GTG

moderate

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Spleen_B_cell
66572 141

TTG ...

LML ...

Ribo-seq
TTG

3 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, R1E, Spleen_B_cell
64685 114

TTG ...

LML ...

Ribo-seq
TTG

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, R1E, Spleen_B_cell
62841 72

ATG ...

MTA ...

Ribo-seq
ATG

moderate

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, R1E
65278 33

CTG ...

LLL ...

Ribo-seq
CTG

3 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, R1E, Spleen_B_cell
169063 48

GTG ...

VNV ...

Ribo-seq
GTG

weak

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, R1E, Spleen_B_cell
64748 78

GTG ...

VAM ...

Ribo-seq
GTG

strong

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, R1E, Spleen_B_cell
191032 78

GTG ...

VEW ...

Ribo-seq
GTG

4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Brain, R1E,
Spleen_B_cell
524655 63

GTG ...

VES ...

Ribo-seq
GTG

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, R1E, Spleen_B_cell
67421 105

GTG ...

VYG ...

Ribo-seq
GTG

4 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, Brain, R1E,
Spleen_B_cell
167655 69

TTG ...

LGE ...

Ribo-seq
TTG

strong

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Spleen_B_cell
67402 204

GTG ...

VVL ...

Ribo-seq
GTG

2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
R1E, Spleen_B_cell
66769 198

CTG ...

LFL ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
R1E, Spleen_B_cell
64466 78

GTG ...

VYG ...

Ribo-seq
GTG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
R1E, Spleen_B_cell
63715 81

GTG ...

VVA ...

Ribo-seq
GTG

strong

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, R1E, Spleen_B_cell
518125 36

ATG ...

MLT ...

Ribo-seq
ATG

moderate

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, R1E, Spleen_B_cell
178755 87

GTG ...

VQQ ...

Ribo-seq
GTG

moderate

3 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
3T3, R1E, Spleen_B_cell
521766 30

GTG ...

VQS ...

Ribo-seq
GTG

2 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
3T3, Spleen_B_cell
67419 162

ATG ...

MIC ...

Ribo-seq
ATG

4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Brain, R1E
520684 30

ATG ...

MTL ...

Ribo-seq
ATG

weak

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Spleen_B_cell
67117 123

CTG ...

LNQ ...

Ribo-seq
CTG

4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Brain, R1E,
Spleen_B_cell
67347 210

ATG ...

MLF ...

Ribo-seq
ATG

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, R1E, Spleen_B_cell
65369 93

ATG ...

MKW ...

Ribo-seq
ATG

moderate

4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Brain, R1E,
Spleen_B_cell
61992 ENSMUST00000164378 G3bp2-202 protein_coding
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

904863 45

ATC ...

IGV ...

Ribo-seq
ATC

strong

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
67402 204

GTG ...

VVL ...

Ribo-seq
GTG

2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain, Testis
832692 42

GTG ...

VIL ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell
65278 33

CTG ...

LLL ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Testis
904826 75

AGG ...

RVL ...

Ribo-seq
AGG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
65369 93

ATG ...

MKW ...

Ribo-seq
ATG

moderate

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell, Testis
62841 72

ATG ...

MTA ...

Ribo-seq
ATG

moderate

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, Brain, Testis
189515 81

ATG ...

MVE ...

Ribo-seq
ATG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell, Brain
64748 78

GTG ...

VAM ...

Ribo-seq
GTG

strong

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, Testis
67224 243

GTG ...

VDS ...

Ribo-seq
GTG

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell, Brain, Testis
904426 93

ATA ...

INF ...

Ribo-seq
ATA

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
524655 63

GTG ...

VES ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell
186913 159

TTG ...

LYF ...

Ribo-seq
TTG

2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
B_cell, Brain
169063 48

GTG ...

VNV ...

Ribo-seq
GTG

weak

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell, Brain
61991 111

ATG ...

MLS ...

Ribo-seq
ATG

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell, BMDC, Testis
66591 171

ATG ...

MFT ...

Ribo-seq
ATG

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell, BMDC, Testis
172294 75

ATG ...

MIC ...

Ribo-seq
ATG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell, Liver
906096 126

AAG ...

KFS ...

Ribo-seq
AAG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC
66948 75

CTG ...

LVS ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
B_cell, Testis
903398 72

ATA ...

ICF ...

Ribo-seq
ATA

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
829388 45

TTG ...

LVI ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell
63948 54

GTG ...

VEW ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell
66769 198

CTG ...

LFL ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain, Testis
520684 30

ATG ...

MTL ...

Ribo-seq
ATG

weak

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
518125 36

ATG ...

MLT ...

Ribo-seq
ATG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell
905691 180

ATA ...

INF ...

Ribo-seq
ATA

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
901607 33

AAG ...

KLP ...

Ribo-seq
AAG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
185294 60

ATG ...

MKM ...

Ribo-seq
ATG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell, MEF
67326 207

TTG ...

LFF ...

Ribo-seq
TTG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, Testis
67419 162

ATG ...

MIC ...

Ribo-seq
ATG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell, Testis
180934 54

ATG ...

MKC ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell
167655 69

TTG ...

LGE ...

Ribo-seq
TTG

strong

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain
178388 54

CTG ...

LNL ...

Ribo-seq
CTG

weak

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell
67372 147

ATG ...

MKM ...

Ribo-seq
ATG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell, Testis
520695 48

ATG ...

MSY ...

Ribo-seq
ATG

weak

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
B_cell
832085 36

CTG ...

LNQ ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell
66447 234

CTG ...

LRG ...

Ribo-seq
CTG

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell, Brain, Testis
172694 45

ATG ...

MPV ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell
905698 159

ATA ...

ICF ...

Ribo-seq
ATA

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
62591 39

CTG ...

LSL ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC, Testis
178755 87

GTG ...

VQQ ...

Ribo-seq
GTG

moderate

2 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
B_cell, BMDC
902578 36

ATA ...

IWN ...

Ribo-seq
ATA

moderate

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC
62478 105

CTG ...

LPE ...

Ribo-seq
CTG

moderate

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, Brain, Testis
67117 123

CTG ...

LNQ ...

Ribo-seq
CTG

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell, Brain, Testis
902824 78

AGG ...

RRS ...

Ribo-seq
AGG

weak

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
905420 123

AAG ...

KRK ...

Ribo-seq
AAG

weak

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
172854 45

CTG ...

LRG ...

Ribo-seq
CTG

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell, Brain, MEF
177257 54

GTG ...

VDS ...

Ribo-seq
GTG

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell, Brain, MEF
65701 39

GTG ...

VES ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell
67438 138

ATG ...

MLS ...

Ribo-seq
ATG

3 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
B_cell, BMDC, Testis
66572 141

TTG ...

LML ...

Ribo-seq
TTG

3 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
B_cell, Brain, Testis
902346 60

ATA ...

ISG ...

Ribo-seq
ATA

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
64056 129

ATG ...

MWK ...

Ribo-seq
ATG

weak

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, Testis
190250 264

TTG ...

LRI ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain
64685 114

TTG ...

LML ...

Ribo-seq
TTG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell, Testis
902128 72

AAG ...

KTG ...

Ribo-seq
AAG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
189549 51

CTG ...

LLL ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain
186481 69

ATG ...

MPV ...

Ribo-seq
ATG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell, Brain
191065 189

CTG ...

LFQ ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell
903094 36

CTG ...

LVV ...

Ribo-seq
CTG

strong

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
904927 51

ATC ...

ISF ...

Ribo-seq
ATC

moderate

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC
189567 57

CTG ...

LSL ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, Brain
190983 129

GTG ...

VIL ...

Ribo-seq
GTG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell, Brain
190270 156

TTG ...

LGM ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
Brain
61390 57

ATG ...

MVE ...

Ribo-seq
ATG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell, Brain
62462 42

CTG ...

LLS ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Testis
62445 63

ATG ...

MFM ...

Ribo-seq
ATG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell, Brain
901636 99

AAG ...

KFS ...

Ribo-seq
AAG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
902680 114

CTG ...

LEE ...

Ribo-seq
CTG

strong

1 sORFs_org_Mouse
    Alternative
    Downstream
    Overlapping
    sORF
BMDC
181569 66

ATG ...

MGF ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
Brain
67347 210

ATG ...

MLF ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Testis
175333 42

GTG ...

VIV ...

Ribo-seq
GTG

weak

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain
904005 57

AAG ...

KMK ...

Ribo-seq
AAG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
174148 48

CTG ...

LVS ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell
64466 78

GTG ...

VYG ...

Ribo-seq
GTG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, Testis
518181 42

CTG ...

LSL ...

Ribo-seq
CTG

moderate

3 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
B_cell, MEF, R1E
189973 87

ATG ...

MFM ...

Ribo-seq
ATG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell, Brain
182680 99

TTG ...

LWN ...

Ribo-seq
TTG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain
63715 81

GTG ...

VVA ...

Ribo-seq
GTG

strong

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, Testis
63003 81

ATG ...

MAG ...

Ribo-seq
ATG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell, BMDC
190509 141

ATG ...

MKC ...

Ribo-seq
ATG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell, Brain
166971 84

ATG ...

MFT ...

Ribo-seq
ATG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell, BMDC
67003 186

CTG ...

LEF ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain, Testis
67421 105

GTG ...

VYG ...

Ribo-seq
GTG

2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC, Testis
173574 39

TTG ...

LVT ...

Ribo-seq
TTG

moderate

2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Liver, MEF
520992 36

GTG ...

VTE ...

Ribo-seq
GTG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
565620 48

ATG ...

MNL ...

Ribo-seq
ATG

weak

2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
B_cell, MEF
190276 105

ATG ...

MAG ...

Ribo-seq
ATG

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell, BMDC, Brain
185703 132

TTG ...

LVI ...

Ribo-seq
TTG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell, Brain
177143 108

TTG ...

LET ...

Ribo-seq
TTG

strong

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, MEF
186786 150

ATG ...

MGF ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
Brain
517442 36

CTG ...

LSQ ...

Ribo-seq
CTG

moderate

3 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
B_cell, BMDC, MEF
191032 78

GTG ...

VEW ...

Ribo-seq
GTG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell, Brain
906239 126

ATT ...

ILN ...

Ribo-seq
ATT

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
67150 ENSMUST00000167918 G3bp2-203 protein_coding
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

67149 105

CTG ...

LQA ...

Ribo-seq
CTG

8 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
BMDC, Brain, E14,
MEF, Neutrophil, NSC,
Testis, v6-5
63948 54

GTG ...

VEW ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
177257 54

GTG ...

VDS ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
172694 45

ATG ...

MPV ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
524655 63

GTG ...

VES ...

Ribo-seq
GTG

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, MEF
189973 87

ATG ...

MFM ...

Ribo-seq
ATG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
523133 99

TTG ...

LMT ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
524369 204

GTG ...

VCA ...

Ribo-seq
GTG

3 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
E14, Neutrophil, v6-5
829388 45

TTG ...

LVI ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
1240664 138

GTG ...

VCA ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
E14
524665 45

GTG ...

VRA ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
E14
903094 36

CTG ...

LVV ...

Ribo-seq
CTG

strong

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, MEF
521766 30

GTG ...

VQS ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
E14
904863 45

ATC ...

IGV ...

Ribo-seq
ATC

strong

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
186481 69

ATG ...

MPV ...

Ribo-seq
ATG

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, MEF
63003 81

ATG ...

MAG ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
62478 105

CTG ...

LPE ...

Ribo-seq
CTG

moderate

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, MEF
175333 42

GTG ...

VIV ...

Ribo-seq
GTG

weak

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
62445 63

ATG ...

MFM ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
185703 132

TTG ...

LVI ...

Ribo-seq
TTG

4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, MEF, Spleen_B_cell,
v6-5
171421 102

CTG ...

LFQ ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, Spleen_B_cell
64056 129

ATG ...

MWK ...

Ribo-seq
ATG

weak

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, MEF
520992 36

GTG ...

VTE ...

Ribo-seq
GTG

moderate

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
190509 141

ATG ...

MKC ...

Ribo-seq
ATG

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, MEF, Spleen_B_cell
1061895 48

ATG ...

MIG ...

Ribo-seq
ATG

moderate

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, MEF
565620 48

ATG ...

MNL ...

Ribo-seq
ATG

weak

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
MEF
65369 93

ATG ...

MKW ...

Ribo-seq
ATG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
1238370 69

ACG ...

TFK ...

Ribo-seq
ACG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
62591 39

CTG ...

LSL ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
MEF
67372 147

ATG ...

MKM ...

Ribo-seq
ATG

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, Spleen_B_cell, v6-5
67421 105

GTG ...

VYG ...

Ribo-seq
GTG

4 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14, MEF, v6-5
903208 204

TTG ...

LEV ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
E14
173574 39

TTG ...

LVT ...

Ribo-seq
TTG

moderate

2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14, MEF
66447 234

CTG ...

LRG ...

Ribo-seq
CTG

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, MEF, v6-5
522816 48

TTG ...

LVL ...

Ribo-seq
TTG

strong

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
905420 123

AAG ...

KRK ...

Ribo-seq
AAG

weak

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
169063 48

GTG ...

VNV ...

Ribo-seq
GTG

weak

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
62462 42

CTG ...

LLS ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
MEF
67347 210

ATG ...

MLF ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
v6-5
905698 159

ATA ...

ICF ...

Ribo-seq
ATA

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
516498 42

TTG ...

LWF ...

Ribo-seq
TTG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
191065 189

CTG ...

LFQ ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, Spleen_B_cell
63715 81

GTG ...

VVA ...

Ribo-seq
GTG

strong

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, MEF
901684 294

CTG ...

LLV ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    sORF
    Upstream
E14
64748 78

GTG ...

VAM ...

Ribo-seq
GTG

strong

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, MEF
524667 102

TTG ...

LLM ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
1241890 96

ATT ...

IPP ...

Ribo-seq
ATT

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
902346 60

ATA ...

ISG ...

Ribo-seq
ATA

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
1242531 294

AGG ...

RCV ...

Ribo-seq
AGG

1 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
E14
1240928 210

AGG ...

RRS ...

Ribo-seq
AGG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
190276 105

ATG ...

MAG ...

Ribo-seq
ATG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
1238168 66

GTG ...

VRA ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
E14
902578 36

ATA ...

IWN ...

Ribo-seq
ATA

moderate

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
62841 72

ATG ...

MTA ...

Ribo-seq
ATG

moderate

4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, MEF, Spleen_B_cell
524135 90

TTG ...

LQV ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
1242258 240

AAG ...

KWR ...

Ribo-seq
AAG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
518181 42

CTG ...

LSL ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
MEF
167655 69

TTG ...

LGE ...

Ribo-seq
TTG

strong

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
67224 243

GTG ...

VDS ...

Ribo-seq
GTG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, MEF
517586 72

GTG ...

VLG ...

Ribo-seq
GTG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
172294 75

ATG ...

MIC ...

Ribo-seq
ATG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, Spleen_B_cell
182680 99

TTG ...

LWN ...

Ribo-seq
TTG

moderate

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, Spleen_B_cell
178755 87

GTG ...

VQQ ...

Ribo-seq
GTG

moderate

1 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
E14
185294 60

ATG ...

MKM ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
1242002 267

AGG ...

RSW ...

Ribo-seq
AGG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
61390 57

ATG ...

MVE ...

Ribo-seq
ATG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, Spleen_B_cell
166971 84

ATG ...

MFT ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
516986 42

GTG ...

VRA ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
E14
832692 42

GTG ...

VIL ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
67117 123

CTG ...

LNQ ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, v6-5
189515 81

ATG ...

MVE ...

Ribo-seq
ATG

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, MEF, Spleen_B_cell
66948 75

CTG ...

LVS ...

Ribo-seq
CTG

3 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14, MEF, v6-5
904927 51

ATC ...

ISF ...

Ribo-seq
ATC

moderate

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
191032 78

GTG ...

VEW ...

Ribo-seq
GTG

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, MEF
67419 162

ATG ...

MIC ...

Ribo-seq
ATG

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, Spleen_B_cell, v6-5
187382 132

GTG ...

VRA ...

Ribo-seq
GTG

7 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
Brain, E14, MEF,
Neutrophil, NSC, v6-5
172854 45

CTG ...

LRG ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, v6-5
873152 177

CTG ...

LLL ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
832085 36

CTG ...

LNQ ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
67438 138

ATG ...

MLS ...

Ribo-seq
ATG

2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14, v6-5
1063119 33

GTG ...

VVH ...

Ribo-seq
GTG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
905308 228

AGG ...

RCV ...

Ribo-seq
AGG

1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
E14
1085168 120

TTG ...

LVL ...

Ribo-seq
TTG

strong

1 sORFs_org_Mouse
    Alternative
    Downstream
    Overlapping
    sORF
E14
1238747 102

ACG ...

TLW ...

Ribo-seq
ACG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
1235096 42

AAG ...

KSC ...

Ribo-seq
AAG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
180934 54

ATG ...

MKC ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
521413 33

TTG ...

LMT ...

Ribo-seq
TTG

weak

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
66572 141

TTG ...

LML ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
v6-5
873017 183

CTG ...

LSL ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14, MEF
177143 108

TTG ...

LET ...

Ribo-seq
TTG

strong

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
65701 39

GTG ...

VES ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
517442 36

CTG ...

LSQ ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
MEF
66591 171

ATG ...

MFT ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
906096 126

AAG ...

KFS ...

Ribo-seq
AAG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
902824 78

AGG ...

RRS ...

Ribo-seq
AGG

weak

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
1238688 81

ATA ...

IPR ...

Ribo-seq
ATA

weak

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
521015 60

CTG ...

LPT ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
E14
186913 159

TTG ...

LYF ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
v6-5
1235557 90

TTG ...

LVR ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
E14
190983 129

GTG ...

VIL ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
67322 ENSMUST00000113127 G3bp2-201 protein_coding
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

1085168 120

TTG ...

LVL ...

Ribo-seq
TTG

strong

1 sORFs_org_Mouse
    Alternative
    Downstream
    Overlapping
    sORF
v6-5
178755 87

GTG ...

VQQ ...

Ribo-seq
GTG

moderate

4 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
BMDC, Brain, MEF,
v6-5
517586 72

GTG ...

VLG ...

Ribo-seq
GTG

moderate

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, MEF, v6-5
520684 30

ATG ...

MTL ...

Ribo-seq
ATG

weak

3 sORFs_org_Mouse
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
E14, Glioma, Liver,
MEF, MESC, NSC
901452 42

AGG ...

REE ...

Ribo-seq
AGG

moderate

1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
E14
66447 234

CTG ...

LRG ...

Ribo-seq
CTG

7 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, Brain, E14,
MEF, Neutrophil, NSC
520695 48

ATG ...

MSY ...

Ribo-seq
ATG

weak

5 sORFs_org_Mouse
Johnstone2016
    InCDS
    Overlapping
    sORF
Brain, E14, Glioma,
Liver, MEF, MESC,
v6-5
524655 63

GTG ...

VES ...

Ribo-seq
GTG

6 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, Brain, MEF,
Neutrophil, v6-5
62841 72

ATG ...

MTA ...

Ribo-seq
ATG

moderate

4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, MEF, Neutrophil,
v6-5
177257 54

GTG ...

VDS ...

Ribo-seq
GTG

9 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, Brain, E14,
Liver, MEF, Neutrophil,
NSC, v6-5
524667 102

TTG ...

LLM ...

Ribo-seq
TTG

3 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain, MEF, v6-5
186913 159

TTG ...

LYF ...

Ribo-seq
TTG

4 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC, E14, MEF,
Neutrophil
189973 87

ATG ...

MFM ...

Ribo-seq
ATG

6 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, Brain, MEF,
Neutrophil, NSC, v6-5
172694 45

ATG ...

MPV ...

Ribo-seq
ATG

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, Brain, v6-5
67438 138

ATG ...

MLS ...

Ribo-seq
ATG

6 sORFs_org_Mouse
Johnstone2016
    InCDS
    Overlapping
    sORF
BMDC, E14, Glioma,
Liver, MEF, MESC,
Neutrophil
174148 48

CTG ...

LVS ...

Ribo-seq
CTG

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, Brain, Liver
1063730 186

CTG ...

LLS ...

Ribo-seq
CTG

5 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC, E14, MEF,
Neutrophil, v6-5
172854 45

CTG ...

LRG ...

Ribo-seq
CTG

8 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, Brain, E14,
Liver, MEF, Neutrophil,
NSC
905361 66

ATT ...

IPK ...

Ribo-seq
ATT

weak

1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
E14
523133 99

TTG ...

LMT ...

Ribo-seq
TTG

3 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain, MEF, v6-5
565620 48

ATG ...

MNL ...

Ribo-seq
ATG

weak

3 sORFs_org_Mouse
Johnstone2016
    InCDS
    Overlapping
    sORF
BMDC, Brain, Glioma,
Liver, MEF, MESC
67419 162

ATG ...

MIC ...

Ribo-seq
ATG

6 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, Brain, E14,
MEF, NSC
522372 48

CTG ...

LCK ...

Ribo-seq
CTG

moderate

4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell, BMDC, Brain,
E14
62591 39

CTG ...

LSL ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC
64056 129

ATG ...

MWK ...

Ribo-seq
ATG

weak

5 sORFs_org_Mouse
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, Glioma, Liver,
MEF, MESC, Neutrophil,
v6-5
191065 189

CTG ...

LFQ ...

Ribo-seq
CTG

6 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, E14, MEF,
NSC, v6-5
66591 171

ATG ...

MFT ...

Ribo-seq
ATG

8 sORFs_org_Mouse
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, Brain, E14,
Glioma, Liver, MEF,
MESC, NSC, v6-5
414900 90

ATT ...

IVQ ...

Ribo-seq
ATT

strong

1 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
C2C12
166971 84

ATG ...

MFT ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
62478 105

CTG ...

LPE ...

Ribo-seq
CTG

moderate

4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, MEF, Neutrophil,
v6-5
190276 105

ATG ...

MAG ...

Ribo-seq
ATG

7 sORFs_org_Mouse
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, Brain, Glioma,
Liver, MEF, MESC,
Neutrophil, v6-5
902680 114

CTG ...

LEE ...

Ribo-seq
CTG

strong

1 sORFs_org_Mouse
    Alternative
    Downstream
    Overlapping
    sORF
v6-5
67117 123

CTG ...

LNQ ...

Ribo-seq
CTG

5 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, E14, MEF,
NSC
182680 99

TTG ...

LWN ...

Ribo-seq
TTG

moderate

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, NSC, v6-5
522816 48

TTG ...

LVL ...

Ribo-seq
TTG

strong

4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, MEF, NSC,
v6-5
516672 138

TTG ...

LEL ...

Ribo-seq
TTG

moderate

6 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
3T3, B_cell, E14,
MEF, Neutrophil, Spleen_B_cell
172294 75

ATG ...

MIC ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
518832 144

GTG ...

VFL ...

Ribo-seq
GTG

weak

5 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
3T3, B_cell, MEF,
Neutrophil, Spleen_B_cell
873152 177

CTG ...

LLL ...

Ribo-seq
CTG

6 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC, E14, Liver,
MEF, Neutrophil, v6-5
167655 69

TTG ...

LGE ...

Ribo-seq
TTG

strong

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, v6-5
64685 114

TTG ...

LML ...

Ribo-seq
TTG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, Liver
186481 69

ATG ...

MPV ...

Ribo-seq
ATG

6 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, Brain, MEF,
Neutrophil, v6-5
63715 81

GTG ...

VVA ...

Ribo-seq
GTG

strong

4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, MEF, Neutrophil,
v6-5
66572 141

TTG ...

LML ...

Ribo-seq
TTG

5 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC, E14, Liver,
MEF, Neutrophil
873017 183

CTG ...

LSL ...

Ribo-seq
CTG

6 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC, E14, Liver,
MEF, Neutrophil, v6-5
177143 108

TTG ...

LET ...

Ribo-seq
TTG

strong

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, NSC, v6-5
521413 33

TTG ...

LMT ...

Ribo-seq
TTG

weak

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, MEF, NSC
518824 102

GTG ...

VAV ...

Ribo-seq
GTG

strong

9 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
3T3, BMDC, Brain,
E14, MEF, Neutrophil,
Spleen_B_cell, v6-5
67372 147

ATG ...

MKM ...

Ribo-seq
ATG

7 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, Brain, E14,
MEF, Neutrophil, NSC
67326 207

TTG ...

LFF ...

Ribo-seq
TTG

6 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, E14, MEF,
NSC, v6-5
521666 96

GTG ...

VRG ...

Ribo-seq
GTG

moderate

9 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
3T3, B_cell, BMDC,
Brain, E14, MEF,
Neutrophil, Spleen_B_cell
67347 210

ATG ...

MLF ...

Ribo-seq
ATG

5 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, E14, MEF,
NSC
570804 144

GTG ...

VAV ...

Ribo-seq
GTG

4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, E14, MEF,
v6-5
190509 141

ATG ...

MKC ...

Ribo-seq
ATG

8 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, Brain, E14,
MEF, Neutrophil, NSC,
v6-5
67321 33

GTG ...

VPA ...

Ribo-seq
GTG

9 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
3T3, B_cell, E14,
MEF, Neutrophil, Spleen_B_cell,
Testis, v6-5
62445 63

ATG ...

MFM ...

Ribo-seq
ATG

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, Brain, v6-5
62462 42

CTG ...

LLS ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC
186622 237

ATG ...

MTI ...

Ribo-seq
ATG

5 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, E14, MEF,
v6-5
185703 132

TTG ...

LVI ...

Ribo-seq
TTG

6 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, E14, MEF,
Neutrophil, NSC
190250 264

TTG ...

LRI ...

Ribo-seq
TTG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, v6-5
173574 39

TTG ...

LVT ...

Ribo-seq
TTG

moderate

6 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC, E14, MEF,
NSC, v6-5
187960 255

ATG ...

MWV ...

Ribo-seq
ATG

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, MEF, v6-5
189515 81

ATG ...

MVE ...

Ribo-seq
ATG

5 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, Brain, MEF,
Neutrophil, v6-5
65701 39

GTG ...

VES ...

Ribo-seq
GTG

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, Brain, v6-5
178388 54

CTG ...

LNL ...

Ribo-seq
CTG

weak

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, Brain
63948 54

GTG ...

VEW ...

Ribo-seq
GTG

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, Brain, v6-5
61991 111

ATG ...

MLS ...

Ribo-seq
ATG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, Liver
829388 45

TTG ...

LVI ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
65369 93

ATG ...

MKW ...

Ribo-seq
ATG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain
904540 240

CTG ...

LTS ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
E14
66948 75

CTG ...

LVS ...

Ribo-seq
CTG

4 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC, E14, MEF,
Neutrophil
1061895 48

ATG ...

MIG ...

Ribo-seq
ATG

moderate

4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, MEF, Neutrophil,
v6-5
67421 105

GTG ...

VYG ...

Ribo-seq
GTG

6 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
B_cell, BMDC, Brain,
Liver, MEF, Neutrophil
518181 42

CTG ...

LSL ...

Ribo-seq
CTG

moderate

2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC, Brain
67224 243

GTG ...

VDS ...

Ribo-seq
GTG

8 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, Brain, E14,
MEF, Neutrophil, NSC,
v6-5
64466 78

GTG ...

VYG ...

Ribo-seq
GTG

4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell, BMDC, Brain,
Liver
524135 90

TTG ...

LQV ...

Ribo-seq
TTG

5 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC, Brain, MEF,
NSC, v6-5
1063119 33

GTG ...

VVH ...

Ribo-seq
GTG

moderate

4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, MEF, Neutrophil,
v6-5
191032 78

GTG ...

VEW ...

Ribo-seq
GTG

6 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, Brain, MEF,
Neutrophil, v6-5
63003 81

ATG ...

MAG ...

Ribo-seq
ATG

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, Brain, v6-5
524454 96

ATG ...

MTL ...

Ribo-seq
ATG

4 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain, E14, MEF,
v6-5
518125 36

ATG ...

MLT ...

Ribo-seq
ATG

moderate

4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, Brain, E14,
Liver
169063 48

GTG ...

VNV ...

Ribo-seq
GTG

weak

6 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, Brain, E14,
Liver, MEF, v6-5
517442 36

CTG ...

LSQ ...

Ribo-seq
CTG

moderate

2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC, Brain
64748 78

GTG ...

VAM ...

Ribo-seq
GTG

strong

4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, MEF, Neutrophil,
v6-5
516498 42

TTG ...

LWF ...

Ribo-seq
TTG

moderate

4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, MEF, NSC,
v6-5
168879 30

CTG ...

LLR ...

Ribo-seq
CTG

moderate

10 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
3T3, B_cell, BMDC,
E14, MEF, Neutrophil,
Spleen_B_cell, v6-5
61390 57

ATG ...

MVE ...

Ribo-seq
ATG

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, Brain, v6-5
903094 36

CTG ...

LVV ...

Ribo-seq
CTG

strong

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, MEF, v6-5
190983 129

GTG ...

VIL ...

Ribo-seq
GTG

6 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, E14, MEF,
NSC, v6-5
65278 33

CTG ...

LLL ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC
1234555 ENSMUST00000201824 G3bp2-206 retained_intron
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

1062672 162

CTG ...

LKP ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Intronic
    sORF
E14
62591 39

CTG ...

LSL ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Intronic
    sORF
E14
181858 42

CTG ...

LEF ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Intronic
    sORF
E14
65369 93

ATG ...

MKW ...

Ribo-seq
ATG

moderate

1 sORFs_org_Mouse
    Intronic
    sORF
E14
565620 48

ATG ...

MNL ...

Ribo-seq
ATG

weak

1 sORFs_org_Mouse
    Intronic
    sORF
E14
517442 36

CTG ...

LSQ ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    Intronic
    sORF
E14
1234696 66

AGG ...

RRS ...

Ribo-seq
AGG

1 sORFs_org_Mouse
    Intronic
    sORF
E14
903398 72

ATA ...

ICF ...

Ribo-seq
ATA

1 sORFs_org_Mouse
    Intronic
    sORF
E14
1236266 90

AGG ...

RRN ...

Ribo-seq
AGG

1 sORFs_org_Mouse
    Intronic
    sORF
E14
829388 45

TTG ...

LVI ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    Intronic
    sORF
E14
1235673 126

CTG ...

LEE ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Intronic
    sORF
E14
1236134 60

AAG ...

KNP ...

Ribo-seq
AAG

weak

1 sORFs_org_Mouse
    Intronic
    sORF
E14
1239836 72

AGG ...

RQP ...

Ribo-seq
AGG

1 sORFs_org_Mouse
    Intronic
    sORF
E14
1238320 102

AAG ...

KPE ...

Ribo-seq
AAG

moderate

1 sORFs_org_Mouse
    Intronic
    sORF
E14
1240075 234

ATA ...

IEE ...

Ribo-seq
ATA

1 sORFs_org_Mouse
    Intronic
    sORF
E14
1240786 81

AGG ...

RSK ...

Ribo-seq
AGG

moderate

1 sORFs_org_Mouse
    Intronic
    sORF
E14
1237617 117

AAG ...

KSA ...

Ribo-seq
AAG

1 sORFs_org_Mouse
    Intronic
    sORF
E14
1238978 75

AAG ...

KSW ...

Ribo-seq
AAG

1 sORFs_org_Mouse
    Intronic
    sORF
E14
180934 54

ATG ...

MKC ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    Intronic
    sORF
E14
1237596 174

AAG ...

KTE ...

Ribo-seq
AAG

1 sORFs_org_Mouse
    Intronic
    sORF
E14
65278 33

CTG ...

LLL ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Intronic
    sORF
E14
1235080 75

AAG ...

KKT ...

Ribo-seq
AAG

moderate

1 sORFs_org_Mouse
    Intronic
    sORF
E14
518125 36

ATG ...

MLT ...

Ribo-seq
ATG

moderate

1 sORFs_org_Mouse
    Intronic
    sORF
E14
1240626 114

AGG ...

RVD ...

Ribo-seq
AGG

moderate

1 sORFs_org_Mouse
    Intronic
    sORF
E14
1235046 135

TTG ...

LEE ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    Intronic
    sORF
E14
1237314 96

AAG ...

KWR ...

Ribo-seq
AAG

1 sORFs_org_Mouse
    Intronic
    sORF
E14
178388 54

CTG ...

LNL ...

Ribo-seq
CTG

weak

1 sORFs_org_Mouse
    Intronic
    sORF
E14
2996132 UNKNOWN_TRANSCRIPT
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

186786 150

ATG ...

MGF ...

Predicted
ATG

1 Samandi2017
    sORF
64056 129

ATG ...

MWK ...

Predicted
ATG

1 Samandi2017
    sORF
66591 171

ATG ...

MFT ...

Predicted
ATG

1 Samandi2017
    sORF
67438 138

ATG ...

MLS ...

Predicted
ATG

1 Samandi2017
    sORF
190276 105

ATG ...

MAG ...

Predicted
ATG

1 Samandi2017
    sORF
61391 ENSMUST00000201820 G3bp2-205 protein_coding
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

63003 81

ATG ...

MAG ...

Ribo-seq
ATG

4 sORFs_org_Mouse
    sORF
E14, MEF, Neutrophil,
Testis
61390 57

ATG ...

MVE ...

Ribo-seq
ATG

3 sORFs_org_Mouse
    sORF
MEF, Neutrophil, Testis
172694 45

ATG ...

MPV ...

Ribo-seq
ATG

3 sORFs_org_Mouse
    sORF
E14, MEF, Neutrophil
62445 63

ATG ...

MFM ...

Ribo-seq
ATG

4 sORFs_org_Mouse
    sORF
E14, MEF, Neutrophil,
Testis
169063 48

GTG ...

VNV ...

Ribo-seq
GTG

weak

2 sORFs_org_Mouse
    sORF
MEF, NSC
65701 39

GTG ...

VES ...

Ribo-seq
GTG

4 sORFs_org_Mouse
    sORF
E14, MEF, Neutrophil,
Testis
178755 87

GTG ...

VQQ ...

Ribo-seq
GTG

moderate

5 sORFs_org_Mouse
    sORF
Brain, E14, MEF,
Neutrophil, NSC
63948 54

GTG ...

VEW ...

Ribo-seq
GTG

4 sORFs_org_Mouse
    sORF
E14, MEF, Neutrophil,
Testis
1235888 36

ATA ...

IKL ...

Ribo-seq
ATA

1 sORFs_org_Mouse
    sORF
E14
1240040 78

AGG ...

RSW ...

Ribo-seq
AGG

1 sORFs_org_Mouse
    sORF
E14
1236632 72

ATT ...

IPP ...

Ribo-seq
ATT

1 sORFs_org_Mouse
    sORF
E14
172854 45

CTG ...

LRG ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    sORF
E14
520695 48

ATG ...

MSY ...

Ribo-seq
ATG

weak

3 sORFs_org_Mouse
    sORF
E14, MEF, NSC
177257 54

GTG ...

VDS ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    sORF
E14
168880 ENSMUST00000202125 G3bp2-208 retained_intron
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

63003 81

ATG ...

MAG ...

Ribo-seq
ATG

moderate

1 sORFs_org_Mouse
    Intronic
    sORF
Brain
901452 42

AGG ...

REE ...

Ribo-seq
AGG

moderate

1 sORFs_org_Mouse
    Intronic
    sORF
BMDC
183305 36

TTG ...

LLN ...

Ribo-seq
TTG

moderate

1 sORFs_org_Mouse
    Intronic
    sORF
Brain
516672 138

TTG ...

LEL ...

Ribo-seq
TTG

moderate

2 sORFs_org_Mouse
    Intronic
    sORF
R1E, v6-5
905308 228

AGG ...

RCV ...

Ribo-seq
AGG

1 sORFs_org_Mouse
    Intronic
    sORF
BMDC
905361 66

ATT ...

IPK ...

Ribo-seq
ATT

weak

1 sORFs_org_Mouse
    Intronic
    sORF
BMDC
172694 45

ATG ...

MPV ...

Ribo-seq
ATG

weak

1 sORFs_org_Mouse
    Intronic
    sORF
Brain
168879 30

CTG ...

LLR ...

Ribo-seq
CTG

moderate

4 sORFs_org_Mouse
    Intronic
    sORF
BMDC, Brain, Liver,
MEF
63948 54

GTG ...

VEW ...

Ribo-seq
GTG

strong

1 sORFs_org_Mouse
    Intronic
    sORF
Brain
65701 39

GTG ...

VES ...

Ribo-seq
GTG

moderate

1 sORFs_org_Mouse
    Intronic
    sORF
Brain
521666 96

GTG ...

VRG ...

Ribo-seq
GTG

moderate

2 sORFs_org_Mouse
    Intronic
    sORF
Liver, R1E
901684 294

CTG ...

LLV ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Intronic
    sORF
BMDC
518824 102

GTG ...

VAV ...

Ribo-seq
GTG

strong

3 sORFs_org_Mouse
    Intronic
    sORF
B_cell, Liver, R1E
180010 72

TTG ...

LGM ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    Intronic
    sORF
Brain
518832 144

GTG ...

VFL ...

Ribo-seq
GTG

weak

1 sORFs_org_Mouse
    Intronic
    sORF
R1E
903208 204

TTG ...

LEV ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    Intronic
    sORF
BMDC
904540 240

CTG ...

LTS ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    Intronic
    sORF
BMDC, MEF
1018677 ENSMUST00000202123 G3bp2-207 protein_coding
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

172854 45

CTG ...

LRG ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    sORF
Brain
63003 81

ATG ...

MAG ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    sORF
Brain
61390 57

ATG ...

MVE ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    sORF
Brain
62445 63

ATG ...

MFM ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    sORF
Brain
523133 99

TTG ...

LMT ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    sORF
Brain
524135 90

TTG ...

LQV ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    sORF
Brain
65701 39

GTG ...

VES ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    sORF
Brain
524667 102

TTG ...

LLM ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    sORF
Brain
190276 105

ATG ...

MAG ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    sORF
Brain
63948 54

GTG ...

VEW ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    sORF
Brain
570804 144

GTG ...

VAV ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    sORF
Brain
524454 96

ATG ...

MTL ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    sORF
Brain
172694 45

ATG ...

MPV ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    sORF
Brain
177257 54

GTG ...

VDS ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    sORF
Brain
1312912 ENSMUST00000202258 G3bp2-209 protein_coding
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

66769 198

CTG ...

LFL ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
67402 204

GTG ...

VVL ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
166971 84

ATG ...

MFT ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Liver
67003 186

CTG ...

LEF ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
171421 102

CTG ...

LFQ ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Liver

ORFs

183 ORFs
10 known transcripts
491 ORF to known transcript associations

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF Length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Start codon

The start codon sequence of the ORF.

ORF annotations

A comma-separated list of all the annotations computed by our algorithm for the ORF. This list includes the annotations computed for the ORF for all transcripts. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of all the cell types in which the ORF has already been identified.

Transcripts

Display all the transcripts related to the entry.

62462 42

CTG...

LLS...

CTG ncRNA
sORF
InCDS
Overlapping
Brain, E14, v6-5,
MEF, BMDC, 3T3,
R1E, Testis
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

166972 ENSMUST00000202352 G3bp2-210 processed_transcript Ribo-seq
3 sORFs_org_Mouse
67150 ENSMUST00000167918 G3bp2-203 protein_coding Ribo-seq
1 sORFs_org_Mouse
67322 ENSMUST00000113127 G3bp2-201 protein_coding Ribo-seq
1 sORFs_org_Mouse
172295 ENSMUST00000169094 G3bp2-204 protein_coding Ribo-seq
2 sORFs_org_Mouse
61992 ENSMUST00000164378 G3bp2-202 protein_coding Ribo-seq
1 sORFs_org_Mouse
178388 54

CTG...

LNL...

CTG Alternative
InCDS
Overlapping
sORF
ncRNA
Intronic
3T3, Brain, R1E,
Spleen_B_cell, B_cell, BMDC,
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

172295 ENSMUST00000169094 G3bp2-204 protein_coding Ribo-seq
weak 4 sORFs_org_Mouse
166972 ENSMUST00000202352 G3bp2-210 processed_transcript Ribo-seq
weak 1 sORFs_org_Mouse
61992 ENSMUST00000164378 G3bp2-202 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
67322 ENSMUST00000113127 G3bp2-201 protein_coding Ribo-seq
weak 2 sORFs_org_Mouse
1234555 ENSMUST00000201824 G3bp2-206 retained_intron Ribo-seq
weak 1 sORFs_org_Mouse
904863 45

ATC...

IGV...

ATC Alternative
InCDS
Overlapping
sORF
BMDC, E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

61992 ENSMUST00000164378 G3bp2-202 protein_coding Ribo-seq
strong 1 sORFs_org_Mouse
67150 ENSMUST00000167918 G3bp2-203 protein_coding Ribo-seq
strong 1 sORFs_org_Mouse
67149 105

CTG...

LQA...

CTG Alternative
Overlapping
sORF
Upstream
BMDC, Brain, E14,
MEF, Neutrophil, NSC,
Testis, v6-5, 3T3,
B_cell, Liver, R1E,
Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

67150 ENSMUST00000167918 G3bp2-203 protein_coding Ribo-seq
8 sORFs_org_Mouse
172295 ENSMUST00000169094 G3bp2-204 protein_coding Ribo-seq
7 sORFs_org_Mouse
166971 84

ATG...

MFT...

ATG ncRNA
sORF
Alternative
InCDS
Overlapping
Brain, E14, MEF,
v6-5, BMDC, Liver,
3T3, R1E, B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

166972 ENSMUST00000202352 G3bp2-210 processed_transcript Ribo-seq
5 sORFs_org_Mouse
67322 ENSMUST00000113127 G3bp2-201 protein_coding Ribo-seq
1 sORFs_org_Mouse
1312912 ENSMUST00000202258 G3bp2-209 protein_coding Ribo-seq
1 sORFs_org_Mouse
172295 ENSMUST00000169094 G3bp2-204 protein_coding Ribo-seq
3 sORFs_org_Mouse
67150 ENSMUST00000167918 G3bp2-203 protein_coding Ribo-seq
1 sORFs_org_Mouse
61992 ENSMUST00000164378 G3bp2-202 protein_coding Ribo-seq
2 sORFs_org_Mouse
67402 204

GTG...

VVL...

GTG InCDS
Overlapping
sORF
Brain, Testis, E14,
R1E, Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

61992 ENSMUST00000164378 G3bp2-202 protein_coding Ribo-seq
2 sORFs_org_Mouse
1312912 ENSMUST00000202258 G3bp2-209 protein_coding Ribo-seq
1 sORFs_org_Mouse
172295 ENSMUST00000169094 G3bp2-204 protein_coding Ribo-seq
2 sORFs_org_Mouse
1085168 120

TTG...

LVL...

TTG Alternative
Downstream
Overlapping
sORF
v6-5, E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

67322 ENSMUST00000113127 G3bp2-201 protein_coding Ribo-seq
strong 1 sORFs_org_Mouse
67150 ENSMUST00000167918 G3bp2-203 protein_coding Ribo-seq
strong 1 sORFs_org_Mouse
516986 42

GTG...

VRA...

GTG Alternative
sORF
Upstream
3T3, Spleen_B_cell, E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

172295 ENSMUST00000169094 G3bp2-204 protein_coding Ribo-seq
2 sORFs_org_Mouse
67150 ENSMUST00000167918 G3bp2-203 protein_coding Ribo-seq
1 sORFs_org_Mouse
832692 42

GTG...

VIL...

GTG Alternative
InCDS
Overlapping
sORF
ncRNA
B_cell, MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

61992 ENSMUST00000164378 G3bp2-202 protein_coding Ribo-seq
1 sORFs_org_Mouse
166972 ENSMUST00000202352 G3bp2-210 processed_transcript Ribo-seq
1 sORFs_org_Mouse
67150 ENSMUST00000167918 G3bp2-203 protein_coding Ribo-seq
1 sORFs_org_Mouse
65278 33

CTG...

LLL...

CTG InCDS
Overlapping
sORF
ncRNA
Intronic
Testis, Brain, E14,
Neutrophil, v6-5, 3T3,
R1E, Spleen_B_cell, BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

61992 ENSMUST00000164378 G3bp2-202 protein_coding Ribo-seq
1 sORFs_org_Mouse
166972 ENSMUST00000202352 G3bp2-210 processed_transcript Ribo-seq
4 sORFs_org_Mouse
1234555 ENSMUST00000201824 G3bp2-206 retained_intron Ribo-seq
1 sORFs_org_Mouse
172295 ENSMUST00000169094 G3bp2-204 protein_coding Ribo-seq
3 sORFs_org_Mouse
67322 ENSMUST00000113127 G3bp2-201 protein_coding Ribo-seq
1 sORFs_org_Mouse
177257 54

GTG...

VDS...

GTG Alternative
InCDS
Overlapping
sORF
3T3, Liver, R1E,
Spleen_B_cell, MEF, BMDC,
Brain, E14, Neutrophil,
NSC, v6-5, B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

172295 ENSMUST00000169094 G3bp2-204 protein_coding Ribo-seq
4 sORFs_org_Mouse
67150 ENSMUST00000167918 G3bp2-203 protein_coding Ribo-seq
1 sORFs_org_Mouse
67322 ENSMUST00000113127 G3bp2-201 protein_coding Ribo-seq
9 sORFs_org_Mouse
61992 ENSMUST00000164378 G3bp2-202 protein_coding Ribo-seq
3 sORFs_org_Mouse
1018677 ENSMUST00000202123 G3bp2-207 protein_coding Ribo-seq
1 sORFs_org_Mouse
61391 ENSMUST00000201820 G3bp2-205 protein_coding Ribo-seq
1 sORFs_org_Mouse
904826 75

AGG...

RVL...

AGG Alternative
InCDS
Overlapping
sORF
BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

61992 ENSMUST00000164378 G3bp2-202 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
65369 93

ATG...

MKW...

ATG Alternative
InCDS
Overlapping
sORF
Intronic
ncRNA
B_cell, Testis, E14,
MEF, Brain, v6-5,
3T3, R1E, Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

61992 ENSMUST00000164378 G3bp2-202 protein_coding Ribo-seq
moderate 2 sORFs_org_Mouse
1234555 ENSMUST00000201824 G3bp2-206 retained_intron Ribo-seq
moderate 1 sORFs_org_Mouse
67150 ENSMUST00000167918 G3bp2-203 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
166972 ENSMUST00000202352 G3bp2-210 processed_transcript Ribo-seq
moderate 2 sORFs_org_Mouse
67322 ENSMUST00000113127 G3bp2-201 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
172295 ENSMUST00000169094 G3bp2-204 protein_coding Ribo-seq
moderate 4 sORFs_org_Mouse
64685 114

TTG...

LML...

TTG ncRNA
sORF
Alternative
InCDS
Overlapping
Brain, E14, Neutrophil,
v6-5, BMDC, Liver,
B_cell, Testis, 3T3,
R1E, Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

166972 ENSMUST00000202352 G3bp2-210 processed_transcript Ribo-seq
4 sORFs_org_Mouse
67322 ENSMUST00000113127 G3bp2-201 protein_coding Ribo-seq
2 sORFs_org_Mouse
61992 ENSMUST00000164378 G3bp2-202 protein_coding Ribo-seq
2 sORFs_org_Mouse
172295 ENSMUST00000169094 G3bp2-204 protein_coding Ribo-seq
3 sORFs_org_Mouse
1062672 162

CTG...

LKP...

CTG Intronic
sORF
ncRNA
E14, Neutrophil
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1234555 ENSMUST00000201824 G3bp2-206 retained_intron Ribo-seq
1 sORFs_org_Mouse
166972 ENSMUST00000202352 G3bp2-210 processed_transcript Ribo-seq
1 sORFs_org_Mouse
178755 87

GTG...

VQQ...

GTG Alternative
Overlapping
sORF
Upstream
BMDC, Brain, MEF,
v6-5, E14, Neutrophil,
NSC, B_cell, 3T3,
R1E, Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

67322 ENSMUST00000113127 G3bp2-201 protein_coding Ribo-seq
moderate 4 sORFs_org_Mouse
61391 ENSMUST00000201820 G3bp2-205 protein_coding Ribo-seq
moderate 5 sORFs_org_Mouse
61992 ENSMUST00000164378 G3bp2-202 protein_coding Ribo-seq
moderate 2 sORFs_org_Mouse
67150 ENSMUST00000167918 G3bp2-203 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
172295 ENSMUST00000169094 G3bp2-204 protein_coding Ribo-seq
moderate 3 sORFs_org_Mouse
168438 123

ATG...

MLF...

ATG ncRNA
sORF
Brain, MEF, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

166972 ENSMUST00000202352 G3bp2-210 processed_transcript Ribo-seq
4 sORFs_org_Mouse
517586 72

GTG...

VLG...

GTG Alternative
InCDS
Overlapping
sORF
E14, MEF, v6-5,
3T3, Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

67322 ENSMUST00000113127 G3bp2-201 protein_coding Ribo-seq
moderate 3 sORFs_org_Mouse
67150 ENSMUST00000167918 G3bp2-203 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
172295 ENSMUST00000169094 G3bp2-204 protein_coding Ribo-seq
moderate 2 sORFs_org_Mouse
185703 132

TTG...

LVI...

TTG Alternative
InCDS
Overlapping
sORF
3T3, Brain, R1E,
E14, MEF, Spleen_B_cell,
v6-5, Neutrophil, NSC,
B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

172295 ENSMUST00000169094 G3bp2-204 protein_coding Ribo-seq
3 sORFs_org_Mouse
67150 ENSMUST00000167918 G3bp2-203 protein_coding Ribo-seq
4 sORFs_org_Mouse
67322 ENSMUST00000113127 G3bp2-201 protein_coding Ribo-seq
6 sORFs_org_Mouse
61992 ENSMUST00000164378 G3bp2-202 protein_coding Ribo-seq
2 sORFs_org_Mouse
62841 72

ATG...

MTA...

ATG Alternative
InCDS
Overlapping
sORF
BMDC, Brain, Testis,
MEF, Neutrophil, v6-5,
E14, Spleen_B_cell, 3T3,
R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

61992 ENSMUST00000164378 G3bp2-202 protein_coding Ribo-seq
moderate 3 sORFs_org_Mouse
67322 ENSMUST00000113127 G3bp2-201 protein_coding Ribo-seq
moderate 4 sORFs_org_Mouse
67150 ENSMUST00000167918 G3bp2-203 protein_coding Ribo-seq
moderate 4 sORFs_org_Mouse
172295 ENSMUST00000169094 G3bp2-204 protein_coding Ribo-seq
moderate 2 sORFs_org_Mouse
63948 54

GTG...

VEW...

GTG Alternative
InCDS
Overlapping
sORF
Intronic
E14, 3T3, R1E,
Spleen_B_cell, B_cell, Brain,
MEF, Neutrophil, Testis,
BMDC, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

67150 ENSMUST00000167918 G3bp2-203 protein_coding Ribo-seq
1 sORFs_org_Mouse
172295 ENSMUST00000169094 G3bp2-204 protein_coding Ribo-seq
3 sORFs_org_Mouse
61992 ENSMUST00000164378 G3bp2-202 protein_coding Ribo-seq
1 sORFs_org_Mouse
168880 ENSMUST00000202125 G3bp2-208 retained_intron Ribo-seq
strong 1 sORFs_org_Mouse
61391 ENSMUST00000201820 G3bp2-205 protein_coding Ribo-seq
4 sORFs_org_Mouse
67322 ENSMUST00000113127 G3bp2-201 protein_coding Ribo-seq
3 sORFs_org_Mouse
1018677 ENSMUST00000202123 G3bp2-207 protein_coding Ribo-seq
1 sORFs_org_Mouse
185294 60

ATG...

MKM...

ATG ncRNA
sORF
Alternative
InCDS
Overlapping
Brain, MEF, v6-5,
B_cell, 3T3, R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

166972 ENSMUST00000202352 G3bp2-210 processed_transcript Ribo-seq
4 sORFs_org_Mouse
61992 ENSMUST00000164378 G3bp2-202 protein_coding Ribo-seq
2 sORFs_org_Mouse
172295 ENSMUST00000169094 G3bp2-204 protein_coding Ribo-seq
3 sORFs_org_Mouse
67150 ENSMUST00000167918 G3bp2-203 protein_coding Ribo-seq
1 sORFs_org_Mouse
520684 30

ATG...

MTL...

ATG Alternative
InCDS
Overlapping
sORF
E14, Glioma, Liver,
MEF, MESC, NSC,
BMDC, Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

67322 ENSMUST00000113127 G3bp2-201 protein_coding Ribo-seq
weak 3 sORFs_org_Mouse
Johnstone2016
61992 ENSMUST00000164378 G3bp2-202 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
172295 ENSMUST00000169094 G3bp2-204 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
901452 42

AGG...

REE...

AGG Alternative
sORF
Upstream
Intronic
E14, BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

67322 ENSMUST00000113127 G3bp2-201 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
168880 ENSMUST00000202125 G3bp2-208 retained_intron Ribo-seq
moderate 1 sORFs_org_Mouse
186786 150

ATG...

MGF...

ATG sORF
Alternative
Overlapping
Upstream
Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

2996132 UNKNOWN_TRANSCRIPT Predicted
1 Samandi2017
61992 ENSMUST00000164378 G3bp2-202 protein_coding Ribo-seq
1 sORFs_org_Mouse
189515 81

ATG...

MVE...

ATG Alternative
InCDS
Overlapping
sORF
B_cell, Brain, 3T3,
R1E, BMDC, MEF,
Neutrophil, v6-5, E14,
Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

61992 ENSMUST00000164378 G3bp2-202 protein_coding Ribo-seq
2 sORFs_org_Mouse
172295 ENSMUST00000169094 G3bp2-204 protein_coding Ribo-seq
3 sORFs_org_Mouse
67322 ENSMUST00000113127 G3bp2-201 protein_coding Ribo-seq
5 sORFs_org_Mouse
67150 ENSMUST00000167918 G3bp2-203 protein_coding Ribo-seq
3 sORFs_org_Mouse
64748 78

GTG...

VAM...

GTG Alternative
InCDS
Overlapping
sORF
Brain, Testis, E14,
MEF, 3T3, R1E,
Spleen_B_cell, BMDC, Neutrophil,
v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

61992 ENSMUST00000164378 G3bp2-202 protein_coding Ribo-seq
strong 2 sORFs_org_Mouse
67150 ENSMUST00000167918 G3bp2-203 protein_coding Ribo-seq
strong 3 sORFs_org_Mouse
172295 ENSMUST00000169094 G3bp2-204 protein_coding Ribo-seq
strong 3 sORFs_org_Mouse
67322 ENSMUST00000113127 G3bp2-201 protein_coding Ribo-seq
strong 4 sORFs_org_Mouse
63003 81

ATG...

MAG...

ATG sORF
Intronic
Alternative
InCDS
Overlapping
E14, MEF, Neutrophil,
Testis, Brain, 3T3,
R1E, Spleen_B_cell, BMDC,
v6-5, B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

61391 ENSMUST00000201820 G3bp2-205 protein_coding Ribo-seq
4 sORFs_org_Mouse
168880 ENSMUST00000202125 G3bp2-208 retained_intron Ribo-seq
moderate 1 sORFs_org_Mouse
1018677 ENSMUST00000202123 G3bp2-207 protein_coding Ribo-seq
1 sORFs_org_Mouse
67150 ENSMUST00000167918 G3bp2-203 protein_coding Ribo-seq
1 sORFs_org_Mouse
172295 ENSMUST00000169094 G3bp2-204 protein_coding Ribo-seq
3 sORFs_org_Mouse
67322 ENSMUST00000113127 G3bp2-201 protein_coding Ribo-seq
3 sORFs_org_Mouse
61992 ENSMUST00000164378 G3bp2-202 protein_coding Ribo-seq
2 sORFs_org_Mouse
67224 243

GTG...

VDS...

GTG Alternative
InCDS
Overlapping
sORF
B_cell, Brain, Testis,
3T3, R1E, Spleen_B_cell,
E14, MEF, BMDC,
Neutrophil, NSC, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

61992 ENSMUST00000164378 G3bp2-202 protein_coding Ribo-seq
3 sORFs_org_Mouse
172295 ENSMUST00000169094 G3bp2-204 protein_coding Ribo-seq
4 sORFs_org_Mouse
67150 ENSMUST00000167918 G3bp2-203 protein_coding Ribo-seq
2 sORFs_org_Mouse
67322 ENSMUST00000113127 G3bp2-201 protein_coding Ribo-seq
8 sORFs_org_Mouse
170584 54

CTG...

LFL...

CTG ncRNA
sORF
Alternative
InCDS
Overlapping
Brain, v6-5, R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

166972 ENSMUST00000202352 G3bp2-210 processed_transcript Ribo-seq
2 sORFs_org_Mouse
172295 ENSMUST00000169094 G3bp2-204 protein_coding Ribo-seq
2 sORFs_org_Mouse
62591 39

CTG...

LSL...

CTG Intronic
sORF
InCDS
Overlapping
ncRNA
E14, BMDC, MEF,
Testis, Brain, v6-5,
3T3, R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1234555 ENSMUST00000201824 G3bp2-206 retained_intron Ribo-seq
1 sORFs_org_Mouse
67322 ENSMUST00000113127 G3bp2-201 protein_coding Ribo-seq
1 sORFs_org_Mouse
67150 ENSMUST00000167918 G3bp2-203 protein_coding Ribo-seq
1 sORFs_org_Mouse
61992 ENSMUST00000164378 G3bp2-202 protein_coding Ribo-seq
2 sORFs_org_Mouse
166972 ENSMUST00000202352 G3bp2-210 processed_transcript Ribo-seq
3 sORFs_org_Mouse
172295 ENSMUST00000169094 G3bp2-204 protein_coding Ribo-seq
2 sORFs_org_Mouse
522372 48

CTG...

LCK...

CTG Alternative
InCDS
Overlapping
sORF
3T3, Brain, R1E,
Spleen_B_cell, B_cell, BMDC,
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

172295 ENSMUST00000169094 G3bp2-204 protein_coding Ribo-seq
moderate 4 sORFs_org_Mouse
67322 ENSMUST00000113127 G3bp2-201 protein_coding Ribo-seq
moderate 4 sORFs_org_Mouse
66447 234

CTG...

LRG...

CTG Alternative
InCDS
Overlapping
sORF
BMDC, Brain, E14,
MEF, Neutrophil, NSC,
B_cell, Testis, v6-5,
3T3, R1E, Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

67322 ENSMUST00000113127 G3bp2-201 protein_coding Ribo-seq
7 sORFs_org_Mouse
61992 ENSMUST00000164378 G3bp2-202 protein_coding Ribo-seq
3 sORFs_org_Mouse
67150 ENSMUST00000167918 G3bp2-203 protein_coding Ribo-seq
3 sORFs_org_Mouse
172295 ENSMUST00000169094 G3bp2-204 protein_coding Ribo-seq
4 sORFs_org_Mouse
904426 93

ATA...

INF...

ATA Alternative
InCDS
Overlapping
sORF
BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

61992 ENSMUST00000164378 G3bp2-202 protein_coding Ribo-seq
1 sORFs_org_Mouse
524655 63

GTG...

VES...

GTG Alternative
InCDS
Overlapping
sORF
B_cell, E14, MEF,
BMDC, Brain, Neutrophil,
v6-5, 3T3, R1E,
Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

61992 ENSMUST00000164378 G3bp2-202 protein_coding Ribo-seq
1 sORFs_org_Mouse
67150 ENSMUST00000167918 G3bp2-203 protein_coding Ribo-seq
3 sORFs_org_Mouse
67322 ENSMUST00000113127 G3bp2-201 protein_coding Ribo-seq
6 sORFs_org_Mouse
172295 ENSMUST00000169094 G3bp2-204 protein_coding Ribo-seq
3 sORFs_org_Mouse
172694 45

ATG...

MPV...

ATG Alternative
InCDS
Overlapping
sORF
Intronic
E14, 3T3, R1E,
Spleen_B_cell, MEF, Neutrophil,
BMDC, Brain, v6-5,
B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

67150 ENSMUST00000167918 G3bp2-203 protein_coding Ribo-seq
1 sORFs_org_Mouse
172295 ENSMUST00000169094 G3bp2-204 protein_coding Ribo-seq
3 sORFs_org_Mouse
61391 ENSMUST00000201820 G3bp2-205 protein_coding Ribo-seq
3 sORFs_org_Mouse
67322 ENSMUST00000113127 G3bp2-201 protein_coding Ribo-seq
3 sORFs_org_Mouse
61992 ENSMUST00000164378 G3bp2-202 protein_coding Ribo-seq
1 sORFs_org_Mouse
168880 ENSMUST00000202125 G3bp2-208 retained_intron Ribo-seq
weak 1 sORFs_org_Mouse
1018677 ENSMUST00000202123 G3bp2-207 protein_coding Ribo-seq
1 sORFs_org_Mouse
189973 87

ATG...

MFM...

ATG Alternative
InCDS
Overlapping
sORF
E14, 3T3, Brain,
R1E, Spleen_B_cell, BMDC,
MEF, Neutrophil, NSC,
v6-5, B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

67150 ENSMUST00000167918 G3bp2-203 protein_coding Ribo-seq
2 sORFs_org_Mouse
172295 ENSMUST00000169094 G3bp2-204 protein_coding Ribo-seq
4 sORFs_org_Mouse
67322 ENSMUST00000113127 G3bp2-201 protein_coding Ribo-seq
6 sORFs_org_Mouse
61992 ENSMUST00000164378 G3bp2-202 protein_coding Ribo-seq
2 sORFs_org_Mouse
186913 159

TTG...

LYF...

TTG InCDS
Overlapping
sORF
B_cell, Brain, BMDC,
E14, MEF, Neutrophil,
v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

61992 ENSMUST00000164378 G3bp2-202 protein_coding Ribo-seq
2 sORFs_org_Mouse
67322 ENSMUST00000113127 G3bp2-201 protein_coding Ribo-seq
4 sORFs_org_Mouse
67150 ENSMUST00000167918 G3bp2-203 protein_coding Ribo-seq
1 sORFs_org_Mouse
523133 99

TTG...

LMT...

TTG InCDS
Overlapping
sORF
E14, Brain, MEF,
v6-5, 3T3, R1E,
Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

67150 ENSMUST00000167918 G3bp2-203 protein_coding Ribo-seq
1 sORFs_org_Mouse
67322 ENSMUST00000113127 G3bp2-201 protein_coding Ribo-seq
3 sORFs_org_Mouse
1018677 ENSMUST00000202123 G3bp2-207 protein_coding Ribo-seq
1 sORFs_org_Mouse
172295 ENSMUST00000169094 G3bp2-204 protein_coding Ribo-seq
3 sORFs_org_Mouse
191065 189

CTG...

LFQ...

CTG Alternative
InCDS
Overlapping
sORF
3T3, Brain, R1E,
E14, MEF, NSC,
v6-5, Spleen_B_cell, B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

172295 ENSMUST00000169094 G3bp2-204 protein_coding Ribo-seq
4 sORFs_org_Mouse
67322 ENSMUST00000113127 G3bp2-201 protein_coding Ribo-seq
6 sORFs_org_Mouse
67150 ENSMUST00000167918 G3bp2-203 protein_coding Ribo-seq
2 sORFs_org_Mouse
61992 ENSMUST00000164378 G3bp2-202 protein_coding Ribo-seq
1 sORFs_org_Mouse
524369 204

GTG...

VCA...

GTG Alternative
Overlapping
sORF
Upstream
E14, Neutrophil, v6-5,
3T3, B_cell, MEF,
Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

67150 ENSMUST00000167918 G3bp2-203 protein_coding Ribo-seq
3 sORFs_org_Mouse
172295 ENSMUST00000169094 G3bp2-204 protein_coding Ribo-seq
4 sORFs_org_Mouse
181113 120

TTG...

LFF...

TTG ncRNA
sORF
Brain, E14, MEF,
v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

166972 ENSMUST00000202352 G3bp2-210 processed_transcript Ribo-seq
5 sORFs_org_Mouse
169063 48

GTG...

VNV...

GTG Alternative
InCDS
Overlapping
sORF
B_cell, Brain, MEF,
NSC, 3T3, R1E,
Spleen_B_cell, BMDC, E14,
Liver, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

61992 ENSMUST00000164378 G3bp2-202 protein_coding Ribo-seq
weak 2 sORFs_org_Mouse
61391 ENSMUST00000201820 G3bp2-205 protein_coding Ribo-seq
weak 2 sORFs_org_Mouse
67150 ENSMUST00000167918 G3bp2-203 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
172295 ENSMUST00000169094 G3bp2-204 protein_coding Ribo-seq
weak 3 sORFs_org_Mouse
67322 ENSMUST00000113127 G3bp2-201 protein_coding Ribo-seq
weak 6 sORFs_org_Mouse
61991 111

ATG...

MLS...

ATG Alternative
InCDS
Overlapping
sORF
ncRNA
B_cell, BMDC, Testis,
3T3, R1E, Spleen_B_cell,
Liver, Brain, E14,
Neutrophil, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

61992 ENSMUST00000164378 G3bp2-202 protein_coding Ribo-seq
3 sORFs_org_Mouse
172295 ENSMUST00000169094 G3bp2-204 protein_coding Ribo-seq
3 sORFs_org_Mouse
67322 ENSMUST00000113127 G3bp2-201 protein_coding Ribo-seq
2 sORFs_org_Mouse
166972 ENSMUST00000202352 G3bp2-210 processed_transcript Ribo-seq
4 sORFs_org_Mouse
829388 45

TTG...

LVI...

TTG Alternative
InCDS
Overlapping
sORF
Intronic
ncRNA
MEF, B_cell, E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

67150 ENSMUST00000167918 G3bp2-203 protein_coding Ribo-seq
1 sORFs_org_Mouse
61992 ENSMUST00000164378 G3bp2-202 protein_coding Ribo-seq
1 sORFs_org_Mouse
1234555 ENSMUST00000201824 G3bp2-206 retained_intron Ribo-seq
1 sORFs_org_Mouse
166972 ENSMUST00000202352 G3bp2-210 processed_transcript Ribo-seq
1 sORFs_org_Mouse
67322 ENSMUST00000113127 G3bp2-201 protein_coding Ribo-seq
1 sORFs_org_Mouse
1240664 138

GTG...

VCA...

GTG Alternative
sORF
Upstream
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

67150 ENSMUST00000167918 G3bp2-203 protein_coding Ribo-seq
1 sORFs_org_Mouse
181858 42

CTG...

LEF...

CTG Intronic
sORF
Alternative
InCDS
Overlapping
ncRNA
E14, Brain, R1E,
v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1234555 ENSMUST00000201824 G3bp2-206 retained_intron Ribo-seq
1 sORFs_org_Mouse
172295 ENSMUST00000169094 G3bp2-204 protein_coding Ribo-seq
2 sORFs_org_Mouse
166972 ENSMUST00000202352 G3bp2-210 processed_transcript Ribo-seq
2 sORFs_org_Mouse
520695 48

ATG...

MSY...

ATG InCDS
Overlapping
sORF
Brain, E14, Glioma,
Liver, MEF, MESC,
v6-5, 3T3, R1E,
Spleen_B_cell, B_cell, NSC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

67322 ENSMUST00000113127 G3bp2-201 protein_coding Ribo-seq
weak 5 sORFs_org_Mouse
Johnstone2016
172295 ENSMUST00000169094 G3bp2-204 protein_coding Ribo-seq
weak 4 sORFs_org_Mouse
61992 ENSMUST00000164378 G3bp2-202 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
61391 ENSMUST00000201820 G3bp2-205 protein_coding Ribo-seq
weak 3 sORFs_org_Mouse
172854 45

CTG...

LRG...

CTG sORF
Alternative
InCDS
Overlapping
Brain, BMDC, E14,
Liver, MEF, Neutrophil,
NSC, 3T3, R1E,
Spleen_B_cell, B_cell, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1018677 ENSMUST00000202123 G3bp2-207 protein_coding Ribo-seq
1 sORFs_org_Mouse
67322 ENSMUST00000113127 G3bp2-201 protein_coding Ribo-seq
8 sORFs_org_Mouse
172295 ENSMUST00000169094 G3bp2-204 protein_coding Ribo-seq
4 sORFs_org_Mouse
61992 ENSMUST00000164378 G3bp2-202 protein_coding Ribo-seq
3 sORFs_org_Mouse
67150 ENSMUST00000167918 G3bp2-203 protein_coding Ribo-seq
2 sORFs_org_Mouse
61391 ENSMUST00000201820 G3bp2-205 protein_coding Ribo-seq
1 sORFs_org_Mouse
66591 171

ATG...

MFT...

ATG Alternative
InCDS
Overlapping
sORF
B_cell, BMDC, Testis,
Brain, E14, Glioma,
Liver, MEF, MESC,
NSC, v6-5,
3T3, R1E, Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

61992 ENSMUST00000164378 G3bp2-202 protein_coding Ribo-seq
3 sORFs_org_Mouse
67322 ENSMUST00000113127 G3bp2-201 protein_coding Ribo-seq
8 sORFs_org_Mouse
Johnstone2016
2996132 UNKNOWN_TRANSCRIPT Predicted
1 Samandi2017
172295 ENSMUST00000169094 G3bp2-204 protein_coding Ribo-seq
5 sORFs_org_Mouse
67150 ENSMUST00000167918 G3bp2-203 protein_coding Ribo-seq
1 sORFs_org_Mouse
173574 39

TTG...

LVT...

TTG InCDS
Overlapping
sORF
Brain, R1E, E14,
MEF, BMDC, NSC,
v6-5, Liver
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

172295 ENSMUST00000169094 G3bp2-204 protein_coding Ribo-seq
moderate 2 sORFs_org_Mouse
67150 ENSMUST00000167918 G3bp2-203 protein_coding Ribo-seq
moderate 2 sORFs_org_Mouse
67322 ENSMUST00000113127 G3bp2-201 protein_coding Ribo-seq
moderate 6 sORFs_org_Mouse
61992 ENSMUST00000164378 G3bp2-202 protein_coding Ribo-seq
moderate 2 sORFs_org_Mouse
524665 45

GTG...

VRA...

GTG Alternative
sORF
Upstream
E14, 3T3, Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

67150 ENSMUST00000167918 G3bp2-203 protein_coding Ribo-seq
1 sORFs_org_Mouse
172295 ENSMUST00000169094 G3bp2-204 protein_coding Ribo-seq
2 sORFs_org_Mouse
67326 207

TTG...

LFF...

TTG Alternative
InCDS
Overlapping
sORF
3T3, R1E, Brain,
Testis, E14, MEF,
NSC, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

172295 ENSMUST00000169094 G3bp2-204 protein_coding Ribo-seq
2 sORFs_org_Mouse
61992 ENSMUST00000164378 G3bp2-202 protein_coding Ribo-seq
2 sORFs_org_Mouse
67322 ENSMUST00000113127 G3bp2-201 protein_coding Ribo-seq
6 sORFs_org_Mouse
524667 102

TTG...

LLM...

TTG InCDS
Overlapping
sORF
Brain, MEF, v6-5,
E14, 3T3, R1E,
Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

67322 ENSMUST00000113127 G3bp2-201 protein_coding Ribo-seq
3 sORFs_org_Mouse
67150 ENSMUST00000167918 G3bp2-203 protein_coding Ribo-seq
1 sORFs_org_Mouse
172295 ENSMUST00000169094 G3bp2-204 protein_coding Ribo-seq
3 sORFs_org_Mouse
1018677 ENSMUST00000202123 G3bp2-207 protein_coding Ribo-seq
1 sORFs_org_Mouse
172294 75

ATG...

MIC...

ATG Alternative
InCDS
Overlapping
sORF
ncRNA
B_cell, Liver, BMDC,
3T3, Brain, R1E,
MEF, Spleen_B_cell, E14,
v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

61992 ENSMUST00000164378 G3bp2-202 protein_coding Ribo-seq
2 sORFs_org_Mouse
67322 ENSMUST00000113127 G3bp2-201 protein_coding Ribo-seq
1 sORFs_org_Mouse
172295 ENSMUST00000169094 G3bp2-204 protein_coding Ribo-seq
4 sORFs_org_Mouse
67150 ENSMUST00000167918 G3bp2-203 protein_coding Ribo-seq
2 sORFs_org_Mouse
166972 ENSMUST00000202352 G3bp2-210 processed_transcript Ribo-seq
4 sORFs_org_Mouse
64056 129

ATG...

MWK...

ATG sORF
Alternative
InCDS
Overlapping
E14, MEF,
BMDC, Glioma, Liver,
MESC, Neutrophil, v6-5,
Brain, Testis, 3T3,
R1E, Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

2996132 UNKNOWN_TRANSCRIPT Predicted
1 Samandi2017
67150 ENSMUST00000167918 G3bp2-203 protein_coding Ribo-seq
weak 3 sORFs_org_Mouse
67322 ENSMUST00000113127 G3bp2-201 protein_coding Ribo-seq
weak 5 sORFs_org_Mouse
Johnstone2016
61992 ENSMUST00000164378 G3bp2-202 protein_coding Ribo-seq
weak 2 sORFs_org_Mouse
172295 ENSMUST00000169094 G3bp2-204 protein_coding Ribo-seq
weak 3 sORFs_org_Mouse
906096 126

AAG...

KFS...

AAG InCDS
Overlapping
sORF
BMDC, E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

61992 ENSMUST00000164378 G3bp2-202 protein_coding Ribo-seq
1 sORFs_org_Mouse
67150 ENSMUST00000167918 G3bp2-203 protein_coding Ribo-seq
1 sORFs_org_Mouse
66948 75

CTG...

LVS...

CTG InCDS
Overlapping
sORF
B_cell, Testis, 3T3,
Brain, R1E, Spleen_B_cell,
E14, MEF, v6-5,
BMDC, Neutrophil
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

61992 ENSMUST00000164378 G3bp2-202 protein_coding Ribo-seq
2 sORFs_org_Mouse
172295 ENSMUST00000169094 G3bp2-204 protein_coding Ribo-seq
4 sORFs_org_Mouse
67150 ENSMUST00000167918 G3bp2-203 protein_coding Ribo-seq
3 sORFs_org_Mouse
67322 ENSMUST00000113127 G3bp2-201 protein_coding Ribo-seq
4 sORFs_org_Mouse
903398 72

ATA...

ICF...

ATA Alternative
InCDS
Overlapping
sORF
Intronic
BMDC, E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

61992 ENSMUST00000164378 G3bp2-202 protein_coding Ribo-seq
1 sORFs_org_Mouse
1234555 ENSMUST00000201824 G3bp2-206 retained_intron Ribo-seq
1 sORFs_org_Mouse
61390 57

ATG...

MVE...

ATG sORF
Alternative
InCDS
Overlapping
MEF, Neutrophil, Testis,
Brain, 3T3, R1E,
E14, Spleen_B_cell, B_cell,
BMDC, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

61391 ENSMUST00000201820 G3bp2-205 protein_coding Ribo-seq
3 sORFs_org_Mouse
1018677 ENSMUST00000202123 G3bp2-207 protein_coding Ribo-seq
1 sORFs_org_Mouse
172295 ENSMUST00000169094 G3bp2-204 protein_coding Ribo-seq
2 sORFs_org_Mouse
67150 ENSMUST00000167918 G3bp2-203 protein_coding Ribo-seq
2 sORFs_org_Mouse
61992 ENSMUST00000164378 G3bp2-202 protein_coding Ribo-seq
2 sORFs_org_Mouse
67322 ENSMUST00000113127 G3bp2-201 protein_coding Ribo-seq
3 sORFs_org_Mouse
903094 36

CTG...

LVV...

CTG Alternative
InCDS
Overlapping
sORF
E14, MEF, BMDC,
v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

67150 ENSMUST00000167918 G3bp2-203 protein_coding Ribo-seq
strong 2 sORFs_org_Mouse
61992 ENSMUST00000164378 G3bp2-202 protein_coding Ribo-seq
strong 1 sORFs_org_Mouse
67322 ENSMUST00000113127 G3bp2-201 protein_coding Ribo-seq
strong 3 sORFs_org_Mouse
565620 48

ATG...

MNL...

ATG Intronic
sORF
InCDS
Overlapping
ncRNA
E14, BMDC, Brain,
Glioma, Liver, MEF,
MESC, 3T3, R1E,
B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1234555 ENSMUST00000201824 G3bp2-206 retained_intron Ribo-seq
weak 1 sORFs_org_Mouse
67322 ENSMUST00000113127 G3bp2-201 protein_coding Ribo-seq
weak 3 sORFs_org_Mouse
Johnstone2016
67150 ENSMUST00000167918 G3bp2-203 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
172295 ENSMUST00000169094 G3bp2-204 protein_coding Ribo-seq
weak 2 sORFs_org_Mouse
61992 ENSMUST00000164378 G3bp2-202 protein_coding Ribo-seq
weak 2 sORFs_org_Mouse
166972 ENSMUST00000202352 G3bp2-210 processed_transcript Ribo-seq
weak 1 sORFs_org_Mouse
67372 147

ATG...

MKM...

ATG Alternative
InCDS
Overlapping
sORF
3T3, Brain, R1E,
B_cell, Testis, MEF,
Spleen_B_cell, v6-5, BMDC,
E14, Neutrophil, NSC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

172295 ENSMUST00000169094 G3bp2-204 protein_coding Ribo-seq
4 sORFs_org_Mouse
61992 ENSMUST00000164378 G3bp2-202 protein_coding Ribo-seq
2 sORFs_org_Mouse
67150 ENSMUST00000167918 G3bp2-203 protein_coding Ribo-seq
3 sORFs_org_Mouse
67322 ENSMUST00000113127 G3bp2-201 protein_coding Ribo-seq
7 sORFs_org_Mouse
521766 30

GTG...

VQS...

GTG Alternative
sORF
Upstream
E14, 3T3, Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

67150 ENSMUST00000167918 G3bp2-203 protein_coding Ribo-seq
1 sORFs_org_Mouse
172295 ENSMUST00000169094 G3bp2-204 protein_coding Ribo-seq
2 sORFs_org_Mouse
64466 78

GTG...

VYG...

GTG ncRNA
sORF
Alternative
InCDS
Overlapping
Brain, E14, Neutrophil,
v6-5, B_cell, BMDC,
Liver, Testis, R1E,
Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

166972 ENSMUST00000202352 G3bp2-210 processed_transcript Ribo-seq
4 sORFs_org_Mouse
67322 ENSMUST00000113127 G3bp2-201 protein_coding Ribo-seq
4 sORFs_org_Mouse
61992 ENSMUST00000164378 G3bp2-202 protein_coding Ribo-seq
2 sORFs_org_Mouse
172295 ENSMUST00000169094 G3bp2-204 protein_coding Ribo-seq
2 sORFs_org_Mouse
66769 198

CTG...

LFL...

CTG InCDS
Overlapping
sORF
Brain, Testis, E14,
R1E, Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

61992 ENSMUST00000164378 G3bp2-202 protein_coding Ribo-seq
2 sORFs_org_Mouse
1312912 ENSMUST00000202258 G3bp2-209 protein_coding Ribo-seq
1 sORFs_org_Mouse
172295 ENSMUST00000169094 G3bp2-204 protein_coding Ribo-seq
2 sORFs_org_Mouse
186481 69

ATG...

MPV...

ATG Alternative
InCDS
Overlapping
sORF
E14, MEF, 3T3,
R1E, Spleen_B_cell, BMDC,
Brain, Neutrophil, v6-5,
B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

67150 ENSMUST00000167918 G3bp2-203 protein_coding Ribo-seq
3 sORFs_org_Mouse
172295 ENSMUST00000169094 G3bp2-204 protein_coding Ribo-seq
3 sORFs_org_Mouse
67322 ENSMUST00000113127 G3bp2-201 protein_coding Ribo-seq
6 sORFs_org_Mouse
61992 ENSMUST00000164378 G3bp2-202 protein_coding Ribo-seq
2 sORFs_org_Mouse
190250 264

TTG...

LRI...

TTG Alternative
InCDS
Overlapping
sORF
R1E, Brain, E14,
v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

172295 ENSMUST00000169094 G3bp2-204 protein_coding Ribo-seq
1 sORFs_org_Mouse
61992 ENSMUST00000164378 G3bp2-202 protein_coding Ribo-seq
1 sORFs_org_Mouse
67322 ENSMUST00000113127 G3bp2-201 protein_coding Ribo-seq
2 sORFs_org_Mouse
62478 105

CTG...

LPE...

CTG Alternative
InCDS
Overlapping
sORF
R1E, Spleen_B_cell, E14,
MEF, BMDC, Neutrophil,
v6-5, Brain, Testis
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

172295 ENSMUST00000169094 G3bp2-204 protein_coding Ribo-seq
moderate 2 sORFs_org_Mouse
67150 ENSMUST00000167918 G3bp2-203 protein_coding Ribo-seq
moderate 3 sORFs_org_Mouse
67322 ENSMUST00000113127 G3bp2-201 protein_coding Ribo-seq
moderate 4 sORFs_org_Mouse
61992 ENSMUST00000164378 G3bp2-202 protein_coding Ribo-seq
moderate 3 sORFs_org_Mouse
570804 144

GTG...

VAV...

GTG Alternative
InCDS
Overlapping
sORF
3T3, Brain, E14,
MEF, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

172295 ENSMUST00000169094 G3bp2-204 protein_coding Ribo-seq
1 sORFs_org_Mouse
67322 ENSMUST00000113127 G3bp2-201 protein_coding Ribo-seq
4 sORFs_org_Mouse
1018677 ENSMUST00000202123 G3bp2-207 protein_coding Ribo-seq
1 sORFs_org_Mouse
518125 36

ATG...

MLT...

ATG Alternative
InCDS
Overlapping
sORF
Intronic
B_cell, E14, BMDC,
Brain, Liver, 3T3,
R1E, Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

61992 ENSMUST00000164378 G3bp2-202 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
1234555 ENSMUST00000201824 G3bp2-206 retained_intron Ribo-seq
moderate 1 sORFs_org_Mouse
67322 ENSMUST00000113127 G3bp2-201 protein_coding Ribo-seq
moderate 4 sORFs_org_Mouse
172295 ENSMUST00000169094 G3bp2-204 protein_coding Ribo-seq
moderate 3 sORFs_org_Mouse
905691 180

ATA...

INF...

ATA Alternative
InCDS
Overlapping
sORF
BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

61992 ENSMUST00000164378 G3bp2-202 protein_coding Ribo-seq
1 sORFs_org_Mouse
524454 96

ATG...

MTL...

ATG InCDS
Overlapping
sORF
3T3, R1E, Spleen_B_cell,
Brain, E14, MEF,
v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

172295 ENSMUST00000169094 G3bp2-204 protein_coding Ribo-seq
3 sORFs_org_Mouse
67322 ENSMUST00000113127 G3bp2-201 protein_coding Ribo-seq
4 sORFs_org_Mouse
1018677 ENSMUST00000202123 G3bp2-207 protein_coding Ribo-seq
1 sORFs_org_Mouse
517442 36

CTG...

LSQ...

CTG Intronic
sORF
InCDS
Overlapping
ncRNA
E14, 3T3, R1E,
Spleen_B_cell, MEF, BMDC,
Brain, B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1234555 ENSMUST00000201824 G3bp2-206 retained_intron Ribo-seq
moderate 1 sORFs_org_Mouse
172295 ENSMUST00000169094 G3bp2-204 protein_coding Ribo-seq
moderate 3 sORFs_org_Mouse
67150 ENSMUST00000167918 G3bp2-203 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
67322 ENSMUST00000113127 G3bp2-201 protein_coding Ribo-seq
moderate 2 sORFs_org_Mouse
166972 ENSMUST00000202352 G3bp2-210 processed_transcript Ribo-seq
moderate 1 sORFs_org_Mouse
61992 ENSMUST00000164378 G3bp2-202 protein_coding Ribo-seq
moderate 3 sORFs_org_Mouse
1234696 66

AGG...

RRS...

AGG Intronic
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1234555 ENSMUST00000201824 G3bp2-206 retained_intron Ribo-seq
1 sORFs_org_Mouse
901607 33

AAG...

KLP...

AAG Alternative
InCDS
Overlapping
sORF
BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

61992 ENSMUST00000164378 G3bp2-202 protein_coding Ribo-seq
1 sORFs_org_Mouse
62445 63

ATG...

MFM...

ATG sORF
Alternative
InCDS
Overlapping
E14, MEF, Neutrophil,
Testis, Brain, BMDC,
v6-5, B_cell, 3T3,
R1E, Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

61391 ENSMUST00000201820 G3bp2-205 protein_coding Ribo-seq
4 sORFs_org_Mouse
67150 ENSMUST00000167918 G3bp2-203 protein_coding Ribo-seq
1 sORFs_org_Mouse
1018677 ENSMUST00000202123 G3bp2-207 protein_coding Ribo-seq
1 sORFs_org_Mouse
67322 ENSMUST00000113127 G3bp2-201 protein_coding Ribo-seq
3 sORFs_org_Mouse
61992 ENSMUST00000164378 G3bp2-202 protein_coding Ribo-seq
2 sORFs_org_Mouse
172295 ENSMUST00000169094 G3bp2-204 protein_coding Ribo-seq
3 sORFs_org_Mouse
180835 114

CTG...

LCC...

CTG ncRNA
sORF
Brain, MEF, NSC,
v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

166972 ENSMUST00000202352 G3bp2-210 processed_transcript Ribo-seq
5 sORFs_org_Mouse
67438 138

ATG...

MLS...

ATG InCDS
Overlapping
sORF
BMDC, E14, Glioma,
Liver, MEF, MESC,
Neutrophil, 3T3, Brain,
R1E, Spleen_B_cell, B_cell,
Testis, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

67322 ENSMUST00000113127 G3bp2-201 protein_coding Ribo-seq
6 sORFs_org_Mouse
Johnstone2016
172295 ENSMUST00000169094 G3bp2-204 protein_coding Ribo-seq
4 sORFs_org_Mouse
61992 ENSMUST00000164378 G3bp2-202 protein_coding Ribo-seq
3 sORFs_org_Mouse
2996132 UNKNOWN_TRANSCRIPT Predicted
1 Samandi2017
67150 ENSMUST00000167918 G3bp2-203 protein_coding Ribo-seq
2 sORFs_org_Mouse
174148 48

CTG...

LVS...

CTG Alternative
InCDS
Overlapping
sORF
ncRNA
BMDC, Brain, Liver,
R1E, Spleen_B_cell, E14,
v6-5, B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

67322 ENSMUST00000113127 G3bp2-201 protein_coding Ribo-seq
3 sORFs_org_Mouse
172295 ENSMUST00000169094 G3bp2-204 protein_coding Ribo-seq
2 sORFs_org_Mouse
166972 ENSMUST00000202352 G3bp2-210 processed_transcript Ribo-seq
3 sORFs_org_Mouse
61992 ENSMUST00000164378 G3bp2-202 protein_coding Ribo-seq
1 sORFs_org_Mouse
175333 42

GTG...

VIV...

GTG Alternative
InCDS
Overlapping
sORF
E14, R1E, Spleen_B_cell,
Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

67150 ENSMUST00000167918 G3bp2-203 protein_coding Ribo-seq
weak 2 sORFs_org_Mouse
172295 ENSMUST00000169094 G3bp2-204 protein_coding Ribo-seq
weak 2 sORFs_org_Mouse
61992 ENSMUST00000164378 G3bp2-202 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
1236266 90

AGG...

RRN...

AGG Intronic
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1234555 ENSMUST00000201824 G3bp2-206 retained_intron Ribo-seq
1 sORFs_org_Mouse
178967 81

CTG...

LPP...

CTG ncRNA
sORF
Brain, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

166972 ENSMUST00000202352 G3bp2-210 processed_transcript Ribo-seq
2 sORFs_org_Mouse
1063730 186

CTG...

LLS...

CTG InCDS
Overlapping
sORF
BMDC, E14, MEF,
Neutrophil, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

67322 ENSMUST00000113127 G3bp2-201 protein_coding Ribo-seq
5 sORFs_org_Mouse
171421 102

CTG...

LFQ...

CTG Alternative
InCDS
Overlapping
sORF
ncRNA
MEF, Spleen_B_cell, Liver,
Brain, R1E, E14,
v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

67150 ENSMUST00000167918 G3bp2-203 protein_coding Ribo-seq
2 sORFs_org_Mouse
1312912 ENSMUST00000202258 G3bp2-209 protein_coding Ribo-seq
1 sORFs_org_Mouse
172295 ENSMUST00000169094 G3bp2-204 protein_coding Ribo-seq
2 sORFs_org_Mouse
166972 ENSMUST00000202352 G3bp2-210 processed_transcript Ribo-seq
5 sORFs_org_Mouse
1805627 282

ATG...

MGV...

ATG Alternative
InCDS
Overlapping
sORF
R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

172295 ENSMUST00000169094 G3bp2-204 protein_coding Ribo-seq
1 sORFs_org_Mouse
520992 36

GTG...

VTE...

GTG Alternative
InCDS
Overlapping
sORF
E14, Spleen_B_cell, BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

67150 ENSMUST00000167918 G3bp2-203 protein_coding Ribo-seq
moderate 2 sORFs_org_Mouse
172295 ENSMUST00000169094 G3bp2-204 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
61992 ENSMUST00000164378 G3bp2-202 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
183305 36

TTG...

LLN...

TTG Intronic
sORF
Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

168880 ENSMUST00000202125 G3bp2-208 retained_intron Ribo-seq
moderate 1 sORFs_org_Mouse
190509 141

ATG...

MKC...

ATG Alternative
InCDS
Overlapping
sORF
E14, MEF, Spleen_B_cell,
BMDC, Brain, Neutrophil,
NSC, v6-5, 3T3,
R1E, B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

67150 ENSMUST00000167918 G3bp2-203 protein_coding Ribo-seq
3 sORFs_org_Mouse
67322 ENSMUST00000113127 G3bp2-201 protein_coding Ribo-seq
8 sORFs_org_Mouse
172295 ENSMUST00000169094 G3bp2-204 protein_coding Ribo-seq
3 sORFs_org_Mouse
61992 ENSMUST00000164378 G3bp2-202 protein_coding Ribo-seq
2 sORFs_org_Mouse
182680 99

TTG...

LWN...

TTG Alternative
InCDS
Overlapping
sORF
3T3, MEF, NSC,
v6-5, E14, Spleen_B_cell,
Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

172295 ENSMUST00000169094 G3bp2-204 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
67322 ENSMUST00000113127 G3bp2-201 protein_coding Ribo-seq
moderate 3 sORFs_org_Mouse
67150 ENSMUST00000167918 G3bp2-203 protein_coding Ribo-seq
moderate 2 sORFs_org_Mouse
61992 ENSMUST00000164378 G3bp2-202 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
905361 66

ATT...

IPK...

ATT Alternative
sORF
Upstream
Intronic
E14, BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

67322 ENSMUST00000113127 G3bp2-201 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
168880 ENSMUST00000202125 G3bp2-208 retained_intron Ribo-seq
weak 1 sORFs_org_Mouse
67419 162

ATG...

MIC...

ATG Alternative
InCDS
Overlapping
sORF
B_cell, Testis, BMDC,
Brain, E14, MEF,
NSC, Spleen_B_cell, v6-5,
3T3, R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

61992 ENSMUST00000164378 G3bp2-202 protein_coding Ribo-seq
2 sORFs_org_Mouse
67322 ENSMUST00000113127 G3bp2-201 protein_coding Ribo-seq
6 sORFs_org_Mouse
67150 ENSMUST00000167918 G3bp2-203 protein_coding Ribo-seq
3 sORFs_org_Mouse
172295 ENSMUST00000169094 G3bp2-204 protein_coding Ribo-seq
4 sORFs_org_Mouse
179998 36

CTG...

LSF...

CTG ncRNA
sORF
Brain, MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

166972 ENSMUST00000202352 G3bp2-210 processed_transcript Ribo-seq
2 sORFs_org_Mouse
180934 54

ATG...

MKC...

ATG Alternative
InCDS
Overlapping
sORF
ncRNA
Intronic
B_cell, Brain, R1E,
MEF, v6-5, E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

61992 ENSMUST00000164378 G3bp2-202 protein_coding Ribo-seq
1 sORFs_org_Mouse
172295 ENSMUST00000169094 G3bp2-204 protein_coding Ribo-seq
2 sORFs_org_Mouse
166972 ENSMUST00000202352 G3bp2-210 processed_transcript Ribo-seq
4 sORFs_org_Mouse
1234555 ENSMUST00000201824 G3bp2-206 retained_intron Ribo-seq
1 sORFs_org_Mouse
67150 ENSMUST00000167918 G3bp2-203 protein_coding Ribo-seq
1 sORFs_org_Mouse
516672 138

TTG...

LEL...

TTG Intronic
sORF
Alternative
Upstream
R1E, v6-5, 3T3,
B_cell, E14, MEF,
Neutrophil, Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

168880 ENSMUST00000202125 G3bp2-208 retained_intron Ribo-seq
moderate 2 sORFs_org_Mouse
67322 ENSMUST00000113127 G3bp2-201 protein_coding Ribo-seq
moderate 6 sORFs_org_Mouse
905308 228

AGG...

RCV...

AGG Intronic
sORF
Alternative
Upstream
BMDC, E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

168880 ENSMUST00000202125 G3bp2-208 retained_intron Ribo-seq
1 sORFs_org_Mouse
67150 ENSMUST00000167918 G3bp2-203 protein_coding Ribo-seq
1 sORFs_org_Mouse
1061895 48

ATG...

MIG...

ATG Alternative
InCDS
Overlapping
sORF
E14, MEF, BMDC,
Neutrophil, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

67150 ENSMUST00000167918 G3bp2-203 protein_coding Ribo-seq
moderate 2 sORFs_org_Mouse
67322 ENSMUST00000113127 G3bp2-201 protein_coding Ribo-seq
moderate 4 sORFs_org_Mouse
187382 132

GTG...

VRA...

GTG Alternative
Overlapping
sORF
Upstream
3T3, B_cell, Brain,
C2C12, Spleen_B_cell, E14,
MEF, Neutrophil, NSC,
v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

172295 ENSMUST00000169094 G3bp2-204 protein_coding Ribo-seq
5 sORFs_org_Mouse
67150 ENSMUST00000167918 G3bp2-203 protein_coding Ribo-seq
7 sORFs_org_Mouse
167655 69

TTG...

LGE...

TTG Alternative
InCDS
Overlapping
sORF
Brain, MEF, v6-5,
E14, Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

61992 ENSMUST00000164378 G3bp2-202 protein_coding Ribo-seq
strong 1 sORFs_org_Mouse
67322 ENSMUST00000113127 G3bp2-201 protein_coding Ribo-seq
strong 2 sORFs_org_Mouse
67150 ENSMUST00000167918 G3bp2-203 protein_coding Ribo-seq
strong 1 sORFs_org_Mouse
172295 ENSMUST00000169094 G3bp2-204 protein_coding Ribo-seq
strong 1 sORFs_org_Mouse
524135 90

TTG...

LQV...

TTG sORF
InCDS
Overlapping
Brain, 3T3, Liver,
R1E, Spleen_B_cell, E14,
BMDC, MEF, NSC,
v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1018677 ENSMUST00000202123 G3bp2-207 protein_coding Ribo-seq
1 sORFs_org_Mouse
172295 ENSMUST00000169094 G3bp2-204 protein_coding Ribo-seq
4 sORFs_org_Mouse
67150 ENSMUST00000167918 G3bp2-203 protein_coding Ribo-seq
1 sORFs_org_Mouse
67322 ENSMUST00000113127 G3bp2-201 protein_coding Ribo-seq
5 sORFs_org_Mouse
67003 186

CTG...

LEF...

CTG InCDS
Overlapping
sORF
R1E, Spleen_B_cell, E14,
Brain, Testis
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

172295 ENSMUST00000169094 G3bp2-204 protein_coding Ribo-seq
2 sORFs_org_Mouse
1312912 ENSMUST00000202258 G3bp2-209 protein_coding Ribo-seq
1 sORFs_org_Mouse
61992 ENSMUST00000164378 G3bp2-202 protein_coding Ribo-seq
2 sORFs_org_Mouse
1238370 69

ACG...

TFK...

ACG Alternative
InCDS
Overlapping
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

67150 ENSMUST00000167918 G3bp2-203 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
414900 90

ATT...

IVQ...

ATT Alternative
Overlapping
sORF
Upstream
C2C12
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

67322 ENSMUST00000113127 G3bp2-201 protein_coding Ribo-seq
strong 1 sORFs_org_Mouse
1235673 126

CTG...

LEE...

CTG Intronic
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1234555 ENSMUST00000201824 G3bp2-206 retained_intron Ribo-seq
1 sORFs_org_Mouse
832085 36

CTG...

LNQ...

CTG Alternative
InCDS
Overlapping
sORF
ncRNA
B_cell, MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

61992 ENSMUST00000164378 G3bp2-202 protein_coding Ribo-seq
1 sORFs_org_Mouse
166972 ENSMUST00000202352 G3bp2-210 processed_transcript Ribo-seq
1 sORFs_org_Mouse
67150 ENSMUST00000167918 G3bp2-203 protein_coding Ribo-seq
1 sORFs_org_Mouse
65701 39

GTG...

VES...

GTG sORF
Alternative
InCDS
Overlapping
Intronic
E14, MEF, Neutrophil,
Testis, Brain, B_cell,
BMDC, v6-5, 3T3,
R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

61391 ENSMUST00000201820 G3bp2-205 protein_coding Ribo-seq
4 sORFs_org_Mouse
1018677 ENSMUST00000202123 G3bp2-207 protein_coding Ribo-seq
1 sORFs_org_Mouse
61992 ENSMUST00000164378 G3bp2-202 protein_coding Ribo-seq
1 sORFs_org_Mouse
168880 ENSMUST00000202125 G3bp2-208 retained_intron Ribo-seq
moderate 1 sORFs_org_Mouse
67322 ENSMUST00000113127 G3bp2-201 protein_coding Ribo-seq
3 sORFs_org_Mouse
172295 ENSMUST00000169094 G3bp2-204 protein_coding Ribo-seq
2 sORFs_org_Mouse
67150 ENSMUST00000167918 G3bp2-203 protein_coding Ribo-seq
1 sORFs_org_Mouse
190276 105

ATG...

MAG...

ATG Alternative
InCDS
Overlapping
sORF
BMDC, Brain, Glioma,
Liver, MEF, MESC,
Neutrophil, v6-5, 3T3,
R1E, Spleen_B_cell, E14,
B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

67322 ENSMUST00000113127 G3bp2-201 protein_coding Ribo-seq
7 sORFs_org_Mouse
Johnstone2016
172295 ENSMUST00000169094 G3bp2-204 protein_coding Ribo-seq
3 sORFs_org_Mouse
67150 ENSMUST00000167918 G3bp2-203 protein_coding Ribo-seq
2 sORFs_org_Mouse
2996132 UNKNOWN_TRANSCRIPT Predicted
1 Samandi2017
1018677 ENSMUST00000202123 G3bp2-207 protein_coding Ribo-seq
1 sORFs_org_Mouse
61992 ENSMUST00000164378 G3bp2-202 protein_coding Ribo-seq
3 sORFs_org_Mouse
902680 114

CTG...

LEE...

CTG Alternative
Downstream
Overlapping
sORF
v6-5, BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

67322 ENSMUST00000113127 G3bp2-201 protein_coding Ribo-seq
strong 1 sORFs_org_Mouse
61992 ENSMUST00000164378 G3bp2-202 protein_coding Ribo-seq
strong 1 sORFs_org_Mouse
67117 123

CTG...

LNQ...

CTG Alternative
InCDS
Overlapping
sORF
Brain, E14, MEF,
NSC, B_cell, Testis,
v6-5, 3T3, R1E,
Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

67322 ENSMUST00000113127 G3bp2-201 protein_coding Ribo-seq
5 sORFs_org_Mouse
61992 ENSMUST00000164378 G3bp2-202 protein_coding Ribo-seq
3 sORFs_org_Mouse
67150 ENSMUST00000167918 G3bp2-203 protein_coding Ribo-seq
2 sORFs_org_Mouse
172295 ENSMUST00000169094 G3bp2-204 protein_coding Ribo-seq
4 sORFs_org_Mouse
522816 48

TTG...

LVL...

TTG Alternative
InCDS
Overlapping
sORF
E14, MEF, NSC,
v6-5, Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

67322 ENSMUST00000113127 G3bp2-201 protein_coding Ribo-seq
strong 4 sORFs_org_Mouse
67150 ENSMUST00000167918 G3bp2-203 protein_coding Ribo-seq
strong 1 sORFs_org_Mouse
172295 ENSMUST00000169094 G3bp2-204 protein_coding Ribo-seq
strong 1 sORFs_org_Mouse
905698 159

ATA...

ICF...

ATA Alternative
InCDS
Overlapping
sORF
BMDC, E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

61992 ENSMUST00000164378 G3bp2-202 protein_coding Ribo-seq
1 sORFs_org_Mouse
67150 ENSMUST00000167918 G3bp2-203 protein_coding Ribo-seq
1 sORFs_org_Mouse
67421 105

GTG...

VYG...

GTG InCDS
Overlapping
sORF
E14, MEF, v6-5,
B_cell, BMDC, Brain,
Liver, Neutrophil, 3T3,
R1E, Spleen_B_cell, Testis
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

67150 ENSMUST00000167918 G3bp2-203 protein_coding Ribo-seq
4 sORFs_org_Mouse
67322 ENSMUST00000113127 G3bp2-201 protein_coding Ribo-seq
6 sORFs_org_Mouse
172295 ENSMUST00000169094 G3bp2-204 protein_coding Ribo-seq
4 sORFs_org_Mouse
61992 ENSMUST00000164378 G3bp2-202 protein_coding Ribo-seq
2 sORFs_org_Mouse
903208 204

TTG...

LEV...

TTG Alternative
sORF
Upstream
Intronic
E14, BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

67150 ENSMUST00000167918 G3bp2-203 protein_coding Ribo-seq
1 sORFs_org_Mouse
168880 ENSMUST00000202125 G3bp2-208 retained_intron Ribo-seq
1 sORFs_org_Mouse
518832 144

GTG...

VFL...

GTG Alternative
sORF
Upstream
Intronic
3T3, B_cell, MEF,
Neutrophil, Spleen_B_cell, R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

67322 ENSMUST00000113127 G3bp2-201 protein_coding Ribo-seq
weak 5 sORFs_org_Mouse
168880 ENSMUST00000202125 G3bp2-208 retained_intron Ribo-seq
weak 1 sORFs_org_Mouse
521413 33

TTG...

LMT...

TTG Alternative
InCDS
Overlapping
sORF
Spleen_B_cell, E14, MEF,
NSC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

172295 ENSMUST00000169094 G3bp2-204 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
67322 ENSMUST00000113127 G3bp2-201 protein_coding Ribo-seq
weak 3 sORFs_org_Mouse
67150 ENSMUST00000167918 G3bp2-203 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
873152 177

CTG...

LLL...

CTG InCDS
Overlapping
sORF
BMDC, E14, Liver,
MEF, Neutrophil, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

67322 ENSMUST00000113127 G3bp2-201 protein_coding Ribo-seq
6 sORFs_org_Mouse
67150 ENSMUST00000167918 G3bp2-203 protein_coding Ribo-seq
1 sORFs_org_Mouse
1660392 66

GTG...

VFG...

GTG ncRNA
sORF
MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

166972 ENSMUST00000202352 G3bp2-210 processed_transcript Ribo-seq
1 sORFs_org_Mouse
190983 129

GTG...

VIL...

GTG Alternative
InCDS
Overlapping
sORF
3T3, Brain, R1E,
Spleen_B_cell, B_cell, E14,
MEF, NSC, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

172295 ENSMUST00000169094 G3bp2-204 protein_coding Ribo-seq
4 sORFs_org_Mouse
61992 ENSMUST00000164378 G3bp2-202 protein_coding Ribo-seq
2 sORFs_org_Mouse
67322 ENSMUST00000113127 G3bp2-201 protein_coding Ribo-seq
6 sORFs_org_Mouse
67150 ENSMUST00000167918 G3bp2-203 protein_coding Ribo-seq
1 sORFs_org_Mouse
902578 36

ATA...

IWN...

ATA InCDS
Overlapping
sORF
BMDC, E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

61992 ENSMUST00000164378 G3bp2-202 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
67150 ENSMUST00000167918 G3bp2-203 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
905420 123

AAG...

KRK...

AAG Alternative
InCDS
Overlapping
sORF
E14, BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

67150 ENSMUST00000167918 G3bp2-203 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
61992 ENSMUST00000164378 G3bp2-202 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
524065 63

CTG...

LPT...

CTG Alternative
sORF
Upstream
3T3, Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

172295 ENSMUST00000169094 G3bp2-204 protein_coding Ribo-seq
2 sORFs_org_Mouse
168879 30

CTG...

LLR...

CTG Intronic
sORF
Alternative
Upstream
BMDC, Brain, Liver,
MEF, 3T3, B_cell,
E14, Neutrophil, Spleen_B_cell,
v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

168880 ENSMUST00000202125 G3bp2-208 retained_intron Ribo-seq
moderate 4 sORFs_org_Mouse
67322 ENSMUST00000113127 G3bp2-201 protein_coding Ribo-seq
moderate 10 sORFs_org_Mouse
63715 81

GTG...

VVA...

GTG Alternative
InCDS
Overlapping
sORF
BMDC, MEF, Neutrophil,
v6-5, E14, Brain,
Testis, 3T3, R1E,
Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

67322 ENSMUST00000113127 G3bp2-201 protein_coding Ribo-seq
strong 4 sORFs_org_Mouse
67150 ENSMUST00000167918 G3bp2-203 protein_coding Ribo-seq
strong 2 sORFs_org_Mouse
61992 ENSMUST00000164378 G3bp2-202 protein_coding Ribo-seq
strong 2 sORFs_org_Mouse
172295 ENSMUST00000169094 G3bp2-204 protein_coding Ribo-seq
strong 3 sORFs_org_Mouse
66572 141

TTG...

LML...

TTG InCDS
Overlapping
sORF
BMDC, E14, Liver,
MEF, Neutrophil, B_cell,
Brain, Testis, 3T3,
R1E, Spleen_B_cell, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

67322 ENSMUST00000113127 G3bp2-201 protein_coding Ribo-seq
5 sORFs_org_Mouse
61992 ENSMUST00000164378 G3bp2-202 protein_coding Ribo-seq
3 sORFs_org_Mouse
172295 ENSMUST00000169094 G3bp2-204 protein_coding Ribo-seq
3 sORFs_org_Mouse
67150 ENSMUST00000167918 G3bp2-203 protein_coding Ribo-seq
1 sORFs_org_Mouse
189549 51

CTG...

LLL...

CTG Alternative
InCDS
Overlapping
sORF
3T3, Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

172295 ENSMUST00000169094 G3bp2-204 protein_coding Ribo-seq
1 sORFs_org_Mouse
61992 ENSMUST00000164378 G3bp2-202 protein_coding Ribo-seq
1 sORFs_org_Mouse
177143 108

TTG...

LET...

TTG Alternative
InCDS
Overlapping
sORF
3T3, R1E, Spleen_B_cell,
MEF, NSC, v6-5,
E14, Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

172295 ENSMUST00000169094 G3bp2-204 protein_coding Ribo-seq
strong 3 sORFs_org_Mouse
67322 ENSMUST00000113127 G3bp2-201 protein_coding Ribo-seq
strong 3 sORFs_org_Mouse
67150 ENSMUST00000167918 G3bp2-203 protein_coding Ribo-seq
strong 2 sORFs_org_Mouse
61992 ENSMUST00000164378 G3bp2-202 protein_coding Ribo-seq
strong 2 sORFs_org_Mouse
67347 210

ATG...

MLF...

ATG Alternative
InCDS
Overlapping
sORF
v6-5, Brain, E14,
MEF, NSC, Testis,
R1E, Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

67150 ENSMUST00000167918 G3bp2-203 protein_coding Ribo-seq
1 sORFs_org_Mouse
67322 ENSMUST00000113127 G3bp2-201 protein_coding Ribo-seq
5 sORFs_org_Mouse
61992 ENSMUST00000164378 G3bp2-202 protein_coding Ribo-seq
1 sORFs_org_Mouse
172295 ENSMUST00000169094 G3bp2-204 protein_coding Ribo-seq
3 sORFs_org_Mouse
873017 183

CTG...

LSL...

CTG InCDS
Overlapping
sORF
BMDC, E14, Liver,
MEF, Neutrophil, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

67322 ENSMUST00000113127 G3bp2-201 protein_coding Ribo-seq
6 sORFs_org_Mouse
67150 ENSMUST00000167918 G3bp2-203 protein_coding Ribo-seq
2 sORFs_org_Mouse
902824 78

AGG...

RRS...

AGG Alternative
InCDS
Overlapping
sORF
BMDC, E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

61992 ENSMUST00000164378 G3bp2-202 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
67150 ENSMUST00000167918 G3bp2-203 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
1236134 60

AAG...

KNP...

AAG Intronic
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1234555 ENSMUST00000201824 G3bp2-206 retained_intron Ribo-seq
weak 1 sORFs_org_Mouse
518181 42

CTG...

LSL...

CTG InCDS
Overlapping
sORF
ncRNA
3T3, Spleen_B_cell, MEF,
BMDC, Brain, B_cell,
R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

172295 ENSMUST00000169094 G3bp2-204 protein_coding Ribo-seq
moderate 2 sORFs_org_Mouse
67150 ENSMUST00000167918 G3bp2-203 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
166972 ENSMUST00000202352 G3bp2-210 processed_transcript Ribo-seq
moderate 1 sORFs_org_Mouse
67322 ENSMUST00000113127 G3bp2-201 protein_coding Ribo-seq
moderate 2 sORFs_org_Mouse
61992 ENSMUST00000164378 G3bp2-202 protein_coding Ribo-seq
moderate 3 sORFs_org_Mouse
175600 60

GTG...

VVL...

GTG ncRNA
sORF
Alternative
InCDS
Overlapping
Brain, v6-5, R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

166972 ENSMUST00000202352 G3bp2-210 processed_transcript Ribo-seq
2 sORFs_org_Mouse
172295 ENSMUST00000169094 G3bp2-204 protein_coding Ribo-seq
2 sORFs_org_Mouse
516498 42

TTG...

LWF...

TTG Alternative
InCDS
Overlapping
sORF
E14, Spleen_B_cell, MEF,
NSC, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

67150 ENSMUST00000167918 G3bp2-203 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
172295 ENSMUST00000169094 G3bp2-204 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
67322 ENSMUST00000113127 G3bp2-201 protein_coding Ribo-seq
moderate 4 sORFs_org_Mouse
571733 33

GTG...

VQS...

GTG Alternative
sORF
Upstream
3T3, B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

172295 ENSMUST00000169094 G3bp2-204 protein_coding Ribo-seq
2 sORFs_org_Mouse
1239836 72

AGG...

RQP...

AGG Intronic
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1234555 ENSMUST00000201824 G3bp2-206 retained_intron Ribo-seq
1 sORFs_org_Mouse
901684 294

CTG...

LLV...

CTG sORF
Upstream
Intronic
E14, BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

67150 ENSMUST00000167918 G3bp2-203 protein_coding Ribo-seq
1 sORFs_org_Mouse
168880 ENSMUST00000202125 G3bp2-208 retained_intron Ribo-seq
1 sORFs_org_Mouse
518824 102

GTG...

VAV...

GTG Alternative
sORF
Upstream
Intronic
3T3, BMDC, Brain,
E14, MEF, Neutrophil,
Spleen_B_cell, v6-5, B_cell,
Liver, R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

67322 ENSMUST00000113127 G3bp2-201 protein_coding Ribo-seq
strong 9 sORFs_org_Mouse
168880 ENSMUST00000202125 G3bp2-208 retained_intron Ribo-seq
strong 3 sORFs_org_Mouse
521015 60

CTG...

LPT...

CTG Alternative
sORF
Upstream
3T3, Spleen_B_cell, E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

172295 ENSMUST00000169094 G3bp2-204 protein_coding Ribo-seq
2 sORFs_org_Mouse
67150 ENSMUST00000167918 G3bp2-203 protein_coding Ribo-seq
1 sORFs_org_Mouse
1241890 96

ATT...

IPP...

ATT Alternative
InCDS
Overlapping
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

67150 ENSMUST00000167918 G3bp2-203 protein_coding Ribo-seq
1 sORFs_org_Mouse
902346 60

ATA...

ISG...

ATA Alternative
InCDS
Overlapping
sORF
E14, BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

67150 ENSMUST00000167918 G3bp2-203 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
61992 ENSMUST00000164378 G3bp2-202 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
1242531 294

AGG...

RCV...

AGG Alternative
Overlapping
sORF
Upstream
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

67150 ENSMUST00000167918 G3bp2-203 protein_coding Ribo-seq
1 sORFs_org_Mouse
1240928 210

AGG...

RRS...

AGG InCDS
Overlapping
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

67150 ENSMUST00000167918 G3bp2-203 protein_coding Ribo-seq
1 sORFs_org_Mouse
1238168 66

GTG...

VRA...

GTG Alternative
sORF
Upstream
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

67150 ENSMUST00000167918 G3bp2-203 protein_coding Ribo-seq
1 sORFs_org_Mouse
521666 96

GTG...

VRG...

GTG Alternative
sORF
Upstream
Intronic
3T3, B_cell, BMDC,
Brain, E14, MEF,
Neutrophil, Spleen_B_cell, Liver,
R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

67322 ENSMUST00000113127 G3bp2-201 protein_coding Ribo-seq
moderate 9 sORFs_org_Mouse
168880 ENSMUST00000202125 G3bp2-208 retained_intron Ribo-seq
moderate 2 sORFs_org_Mouse
186622 237

ATG...

MTI...

ATG Alternative
InCDS
Overlapping
sORF
Brain, R1E, E14,
MEF, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

172295 ENSMUST00000169094 G3bp2-204 protein_coding Ribo-seq
2 sORFs_org_Mouse
67322 ENSMUST00000113127 G3bp2-201 protein_coding Ribo-seq
5 sORFs_org_Mouse
1238320 102

AAG...

KPE...

AAG Intronic
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1234555 ENSMUST00000201824 G3bp2-206 retained_intron Ribo-seq
moderate 1 sORFs_org_Mouse
1242258 240

AAG...

KWR...

AAG InCDS
Overlapping
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

67150 ENSMUST00000167918 G3bp2-203 protein_coding Ribo-seq
1 sORFs_org_Mouse
184103 93

GTG...

VEE...

GTG ncRNA
sORF
Brain, MEF, Neutrophil,
NSC, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

166972 ENSMUST00000202352 G3bp2-210 processed_transcript Ribo-seq
6 sORFs_org_Mouse
67321 33

GTG...

VPA...

GTG Alternative
sORF
Upstream
3T3, B_cell, E14,
MEF, Neutrophil, Spleen_B_cell,
Testis, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

67322 ENSMUST00000113127 G3bp2-201 protein_coding Ribo-seq
9 sORFs_org_Mouse
189567 57

CTG...

LSL...

CTG Alternative
InCDS
Overlapping
sORF
3T3, BMDC, Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

172295 ENSMUST00000169094 G3bp2-204 protein_coding Ribo-seq
1 sORFs_org_Mouse
61992 ENSMUST00000164378 G3bp2-202 protein_coding Ribo-seq
2 sORFs_org_Mouse
1240075 234

ATA...

IEE...

ATA Intronic
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1234555 ENSMUST00000201824 G3bp2-206 retained_intron Ribo-seq
1 sORFs_org_Mouse
1240786 81

AGG...

RSK...

AGG Intronic
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1234555 ENSMUST00000201824 G3bp2-206 retained_intron Ribo-seq
moderate 1 sORFs_org_Mouse
902128 72

AAG...

KTG...

AAG Alternative
InCDS
Overlapping
sORF
BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

61992 ENSMUST00000164378 G3bp2-202 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
171473 51

GTG...

VQE...

GTG ncRNA
sORF
Brain, MEF, Neutrophil,
NSC, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

166972 ENSMUST00000202352 G3bp2-210 processed_transcript Ribo-seq
6 sORFs_org_Mouse
187960 255

ATG...

MWV...

ATG Alternative
InCDS
Overlapping
sORF
E14, MEF, v6-5,
Brain, R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

67322 ENSMUST00000113127 G3bp2-201 protein_coding Ribo-seq
3 sORFs_org_Mouse
172295 ENSMUST00000169094 G3bp2-204 protein_coding Ribo-seq
2 sORFs_org_Mouse
1085922 132

TTG...

LYF...

TTG ncRNA
sORF
E14, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

166972 ENSMUST00000202352 G3bp2-210 processed_transcript Ribo-seq
2 sORFs_org_Mouse
1242002 267

AGG...

RSW...

AGG Alternative
InCDS
Overlapping
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

67150 ENSMUST00000167918 G3bp2-203 protein_coding Ribo-seq
1 sORFs_org_Mouse
1235888 36

ATA...

IKL...

ATA sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

61391 ENSMUST00000201820 G3bp2-205 protein_coding Ribo-seq
1 sORFs_org_Mouse
904927 51

ATC...

ISF...

ATC InCDS
Overlapping
sORF
BMDC, E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

61992 ENSMUST00000164378 G3bp2-202 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
67150 ENSMUST00000167918 G3bp2-203 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
1237617 117

AAG...

KSA...

AAG Intronic
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1234555 ENSMUST00000201824 G3bp2-206 retained_intron Ribo-seq
1 sORFs_org_Mouse
190270 156

TTG...

LGM...

TTG Alternative
Overlapping
sORF
Upstream
Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

61992 ENSMUST00000164378 G3bp2-202 protein_coding Ribo-seq
1 sORFs_org_Mouse
1240040 78

AGG...

RSW...

AGG sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

61391 ENSMUST00000201820 G3bp2-205 protein_coding Ribo-seq
1 sORFs_org_Mouse
1238978 75

AAG...

KSW...

AAG Intronic
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1234555 ENSMUST00000201824 G3bp2-206 retained_intron Ribo-seq
1 sORFs_org_Mouse
191032 78

GTG...

VEW...

GTG Alternative
InCDS
Overlapping
sORF
E14, MEF, BMDC,
Brain, Neutrophil, v6-5,
3T3, R1E, Spleen_B_cell,
B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

67150 ENSMUST00000167918 G3bp2-203 protein_coding Ribo-seq
3 sORFs_org_Mouse
67322 ENSMUST00000113127 G3bp2-201 protein_coding Ribo-seq
6 sORFs_org_Mouse
172295 ENSMUST00000169094 G3bp2-204 protein_coding Ribo-seq
4 sORFs_org_Mouse
61992 ENSMUST00000164378 G3bp2-202 protein_coding Ribo-seq
2 sORFs_org_Mouse
901636 99

AAG...

KFS...

AAG Alternative
InCDS
Overlapping
sORF
BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

61992 ENSMUST00000164378 G3bp2-202 protein_coding Ribo-seq
1 sORFs_org_Mouse
904540 240

CTG...

LTS...

CTG Alternative
sORF
Upstream
Intronic
E14, BMDC, MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

67322 ENSMUST00000113127 G3bp2-201 protein_coding Ribo-seq
1 sORFs_org_Mouse
168880 ENSMUST00000202125 G3bp2-208 retained_intron Ribo-seq
2 sORFs_org_Mouse
181569 66

ATG...

MGF...

ATG Alternative
sORF
Upstream
Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

61992 ENSMUST00000164378 G3bp2-202 protein_coding Ribo-seq
1 sORFs_org_Mouse
1063119 33

GTG...

VVH...

GTG Alternative
InCDS
Overlapping
sORF
MEF, BMDC, Neutrophil,
v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

67150 ENSMUST00000167918 G3bp2-203 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
67322 ENSMUST00000113127 G3bp2-201 protein_coding Ribo-seq
moderate 4 sORFs_org_Mouse
1236632 72

ATT...

IPP...

ATT sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

61391 ENSMUST00000201820 G3bp2-205 protein_coding Ribo-seq
1 sORFs_org_Mouse
904005 57

AAG...

KMK...

AAG Alternative
InCDS
Overlapping
sORF
BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

61992 ENSMUST00000164378 G3bp2-202 protein_coding Ribo-seq
1 sORFs_org_Mouse
1237596 174

AAG...

KTE...

AAG Intronic
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1234555 ENSMUST00000201824 G3bp2-206 retained_intron Ribo-seq
1 sORFs_org_Mouse
573395 60

CTG...

LLS...

CTG Alternative
InCDS
Overlapping
sORF
3T3
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

172295 ENSMUST00000169094 G3bp2-204 protein_coding Ribo-seq
1 sORFs_org_Mouse
1238747 102

ACG...

TLW...

ACG Alternative
InCDS
Overlapping
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

67150 ENSMUST00000167918 G3bp2-203 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
180010 72

TTG...

LGM...

TTG Intronic
sORF
Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

168880 ENSMUST00000202125 G3bp2-208 retained_intron Ribo-seq
1 sORFs_org_Mouse
1235096 42

AAG...

KSC...

AAG Alternative
InCDS
Overlapping
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

67150 ENSMUST00000167918 G3bp2-203 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
1235080 75

AAG...

KKT...

AAG Intronic
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1234555 ENSMUST00000201824 G3bp2-206 retained_intron Ribo-seq
moderate 1 sORFs_org_Mouse
173918 96

GTG...

VTS...

GTG ncRNA
sORF
Brain, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

166972 ENSMUST00000202352 G3bp2-210 processed_transcript Ribo-seq
2 sORFs_org_Mouse
1240626 114

AGG...

RVD...

AGG Intronic
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1234555 ENSMUST00000201824 G3bp2-206 retained_intron Ribo-seq
moderate 1 sORFs_org_Mouse
1235046 135

TTG...

LEE...

TTG Intronic
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1234555 ENSMUST00000201824 G3bp2-206 retained_intron Ribo-seq
1 sORFs_org_Mouse
1237314 96

AAG...

KWR...

AAG Intronic
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1234555 ENSMUST00000201824 G3bp2-206 retained_intron Ribo-seq
1 sORFs_org_Mouse
1238688 81

ATA...

IPR...

ATA Alternative
InCDS
Overlapping
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

67150 ENSMUST00000167918 G3bp2-203 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
1235557 90

TTG...

LVR...

TTG Alternative
sORF
Upstream
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

67150 ENSMUST00000167918 G3bp2-203 protein_coding Ribo-seq
1 sORFs_org_Mouse
906239 126

ATT...

ILN...

ATT Alternative
InCDS
Overlapping
sORF
BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

61992 ENSMUST00000164378 G3bp2-202 protein_coding Ribo-seq
1 sORFs_org_Mouse

Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5