Gene NCBI:22273 | MetamORF

Gene

ID CARD

NCBI:22273

Aliases

1110032G10Rik
ENSMUSG00000025651, MGI:107876, NCBI:22273
OFF:Uqcrc1, Uqcrc1

Chromosome

Transcripts

102 ORFs
8 known transcripts
164 ORF to known transcript associations

MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

ORFs

Display all the transcripts related to the entry.

989702

ENSMUST00000195387

Uqcrc1-207

retained_intron

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1571623	243	CTG ...	LLW ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Brain
86507	75	CTG ...	LIP ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Intronic sORF	BMDC, Brain, Liver, R1E
85761	99	TTG ...	LSR ...	Ribo-seq	TTG		5	sORFs_org_Mouse	Intronic sORF	BMDC, Brain, Liver, R1E
6560	72	CTG ...	LAV ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Intronic sORF	BMDC, Brain, Liver, R1E
759766	204	TTG ...	LAS ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Intronic sORF	Brain, Liver, R1E
86242	117	GTG ...	VWI ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Intronic sORF	BMDC, Brain, Liver, R1E
87099	162	CTG ...	LLR ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Intronic sORF	BMDC, Brain, Liver, R1E
6458	60	ATG ...	MRL ...	Ribo-seq	ATG		4	sORFs_org_Mouse	Intronic sORF	BMDC, Brain, Liver, R1E
84524	69	CTG ...	LRV ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Intronic sORF	BMDC, Brain, Liver, R1E
85932	42	GTG ...	VWP ...	Ribo-seq	GTG		5	sORFs_org_Mouse	Intronic sORF	BMDC, Brain, Liver, R1E
6556	42	ATG ...	MEQ ...	Ribo-seq	ATG		4	sORFs_org_Mouse	Intronic sORF	BMDC, Brain, Liver, R1E
5915	54	CTG ...	LRR ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Intronic sORF	BMDC, Brain, Liver, R1E
85714	159	CTG ...	LRL ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Intronic sORF	BMDC, Brain, Liver, R1E
86044	144	TTG ...	LRG ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Intronic sORF	BMDC, Brain, Liver, R1E
86740	63	GTG ...	VAS ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Intronic sORF	BMDC, Brain, Liver, R1E
84763	111	GTG ...	VGA ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Intronic sORF	BMDC, Brain, Liver, R1E
83353	45	ATG ...	MSD ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Intronic sORF	Brain, R1E
84553	123	GTG ...	VGV ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Intronic sORF	BMDC, Brain, Liver, R1E
84359	105	GTG ...	VPE ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Intronic sORF	BMDC, Brain, Liver, R1E
83856	48	TTG ...	LMS ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Intronic sORF	Brain, R1E
6262	78	TTG ...	LTL ...	Ribo-seq	TTG		5	sORFs_org_Mouse	Intronic sORF	BMDC, Brain, Liver, R1E
1570656	267	ATG ...	MAE ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Intronic sORF	Brain
87137	126	CTG ...	LPC ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Intronic sORF	BMDC, Brain, Liver, R1E
86195	81	TTG ...	LDN ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Intronic sORF	BMDC, Brain, Liver, R1E
86558	123	CTG ...	LVP ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Intronic sORF	BMDC, Brain, R1E

5916

ENSMUST00000026743

Uqcrc1-201

protein_coding

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1693324	36	GTG ...	VRT ...	Ribo-seq	GTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
1589661	51	CTG ...	LWR ...	Ribo-seq	CTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
85158	96	CTG ...	LWL ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, Liver, v6-5
617845	69	ATG ...	MTP ...	Ribo-seq	ATG	moderate	1	Johnstone2016	InCDS Overlapping sORF	Glioma, Liver, MEF, MESC
1272480	51	ACG ...	TGC ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
438863	99	CTG ...	LTE ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	B_cell, Spleen_B_cell
6560	72	CTG ...	LAV ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, Liver, Skin_tumor
6458	60	ATG ...	MRL ...	Ribo-seq	ATG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, Liver, MEF, Skin_tumor
6926	81	CTG ...	LRR ...	Ribo-seq	CTG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, E14, Liver, MEF, R1E, Skin_tumor
6558	75	TTG ...	LWS ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	InCDS Overlapping sORF	MEF, Skin_tumor
6556	42	ATG ...	MEQ ...	Ribo-seq	ATG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, Liver, MEF, Skin_tumor
1271129	96	AGG ...	RPS ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
5915	54	CTG ...	LRR ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver, Skin_tumor
86867	99	TTG ...	LLW ...	Ribo-seq	TTG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, Liver, v6-5
85932	42	GTG ...	VWP ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver
87137	126	CTG ...	LPC ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, Liver
763600	156	GTG ...	VWP ...	Ribo-seq	GTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Liver, MEF, R1E
255406	90	CTG ...	LTE ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	B_cell, Brain, Liver, R1E, Spleen_B_cell
6262	78	TTG ...	LTL ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, Liver, Skin_tumor
1275943	210	AGG ...	RPS ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
88035	240	CTG ...	LPC ...	Ribo-seq	CTG		7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC, Liver, MEF, Testis, v6-5
885005	150	ATG ...	MTA ...	Ribo-seq	ATG		4	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	E14, Glioma, Liver, MEF, MESC
1275071	165	ACG ...	TGC ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
274190	105	TTG ...	LTL ...	Ribo-seq	TTG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Brain, Liver, MEF, R1E
274020	69	ATG ...	MEQ ...	Ribo-seq	ATG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Brain, Liver, MEF, R1E
885201	69	ATG ...	MTW ...	Ribo-seq	ATG		5	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	E14, Glioma, Liver, MEF, MESC, NSC, R1E
6873	99	CTG ...	LAV ...	Ribo-seq	CTG		8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, Liver, MEF, R1E, Skin_tumor
6994	87	ATG ...	MRL ...	Ribo-seq	ATG		7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, Liver, MEF, R1E, Skin_tumor

83293

ENSMUST00000193332

Uqcrc1-204

retained_intron

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
435377	39	TTG ...	LPE ...	Ribo-seq	TTG	moderate	4	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, MEF, Spleen_B_cell
85834	201	CTG ...	LPL ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	Intronic sORF	BMDC, Brain, NSC, Testis
84663	150	ATG ...	MLL ...	Ribo-seq	ATG	weak	4	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, Spleen_B_cell, Testis
84396	162	CTG ...	LSS ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, MEF, Spleen_B_cell, Testis
85158	96	CTG ...	LWL ...	Ribo-seq	CTG	weak	5	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, MEF, Spleen_B_cell, Testis
86913	147	GTG ...	VEH ...	Ribo-seq	GTG		9	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, BMDC, Brain, MEF, Neutrophil, NSC, Spleen_B_cell, Testis
86867	99	TTG ...	LLW ...	Ribo-seq	TTG	weak	5	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, MEF, Spleen_B_cell, Testis
85856	150	CTG ...	LAS ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, MEF, Spleen_B_cell, Testis
84343	51	CTG ...	LVS ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Intronic sORF	BMDC, Brain, Spleen_B_cell, Testis
85629	72	GTG ...	VPG ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Intronic sORF	B_cell, Brain, Testis
86873	72	GTG ...	VTR ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Intronic sORF	3T3, Spleen_B_cell, Testis
87090	60	ATG ...	MPC ...	Ribo-seq	ATG		6	sORFs_org_Mouse	Intronic sORF	BMDC, Brain, NSC, Spleen_B_cell, Testis
84085	84	GTG ...	VSP ...	Ribo-seq	GTG		9	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, BMDC, Brain, MEF, Neutrophil, NSC, Spleen_B_cell, Testis
83305	81	GTG ...	VDA ...	Ribo-seq	GTG	strong	3	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, Testis
437968	30	ATG ...	MTA ...	Ribo-seq	ATG	moderate	4	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, MEF, Spleen_B_cell
84697	72	CTG ...	LGA ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, Spleen_B_cell, Testis
83629	63	CTG ...	LAE ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Testis
435319	39	ATG ...	MTP ...	Ribo-seq	ATG	moderate	6	sORFs_org_Mouse	Intronic sORF	3T3, BMDC, Brain, NSC, Spleen_B_cell, v6-5
437770	66	ATG ...	MCC ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Intronic sORF	BMDC, Spleen_B_cell
86031	69	ATG ...	MKK ...	Ribo-seq	ATG		7	sORFs_org_Mouse	Intronic sORF	BMDC, Brain, MEF, NSC, Spleen_B_cell, Testis, v6-5
83811	186	GTG ...	VAI ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Intronic sORF	Brain, Testis
84687	159	GTG ...	VPQ ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	Intronic sORF	Spleen_B_cell, Testis
85321	108	TTG ...	LSS ...	Ribo-seq	TTG		8	sORFs_org_Mouse	Intronic sORF	B_cell, BMDC, Brain, MEF, Neutrophil, NSC, Spleen_B_cell, Testis
86708	48	ATG ...	MAA ...	Ribo-seq	ATG	moderate	4	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, Neutrophil, Testis
84312	132	CTG ...	LLD ...	Ribo-seq	CTG		9	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, BMDC, Brain, MEF, Neutrophil, NSC, Spleen_B_cell, Testis
86834	144	CTG ...	LIL ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, Spleen_B_cell, Testis
84805	75	CTG ...	LLG ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, Spleen_B_cell, Testis
84021	87	CTG ...	LTY ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Intronic sORF	B_cell, Testis
434125	45	CTG ...	LIL ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, MEF, Spleen_B_cell
434881	39	CTG ...	LGC ...	Ribo-seq	CTG	strong	4	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, MEF, Spleen_B_cell
85881	51	TTG ...	LPL ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	Intronic sORF	Spleen_B_cell, Testis
85654	66	CTG ...	LRD ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Intronic sORF	3T3, Testis
86648	129	CTG ...	LDL ...	Ribo-seq	CTG		9	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, BMDC, Brain, MEF, Neutrophil, NSC, Spleen_B_cell, Testis
85246	45	CTG ...	LAA ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Intronic sORF	3T3, Spleen_B_cell, Testis
436697	45	GTG ...	VWN ...	Ribo-seq	GTG	weak	8	sORFs_org_Mouse	Intronic sORF	B_cell, BMDC, MEF, Neutrophil, NSC, Spleen_B_cell
83292	33	CTG ...	LCV ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Intronic sORF	3T3, Testis
83781	114	GTG ...	VCE ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	Intronic sORF	B_cell, Testis
83894	135	GTG ...	VAN ...	Ribo-seq	GTG		5	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, MEF, Spleen_B_cell, Testis
85922	90	GTG ...	VYE ...	Ribo-seq	GTG		8	sORFs_org_Mouse	Intronic sORF	B_cell, BMDC, Brain, MEF, Neutrophil, NSC, Spleen_B_cell, Testis
85293	195	TTG ...	LAH ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Intronic sORF	Brain, Testis

83320

ENSMUST00000192305

Uqcrc1-202

protein_coding

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1269080	66	ACG ...	TPP ...	Ribo-seq	ACG	moderate	1	sORFs_org_Mouse	sORF	E14
6558	75	TTG ...	LWS ...	Ribo-seq	TTG	moderate	8	sORFs_org_Mouse	sORF	3T3, B_cell, Liver, MEF, Neutrophil, NSC, v6-5
86669	132	GTG ...	VIL ...	Ribo-seq	GTG	moderate	10	sORFs_org_Mouse	sORF	3T3, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, Testis, v6-5
87131	201	GTG ...	VEL ...	Ribo-seq	GTG	strong	14	sORFs_org_Mouse	sORF	3T3, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, Spleen_B_cell, Testis, v6-5
1270376	150	ATC ...	IEK ...	Ribo-seq	ATC	moderate	1	sORFs_org_Mouse	sORF	E14
83437	126	CTG ...	LRE ...	Ribo-seq	CTG	moderate	11	sORFs_org_Mouse	sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, Testis, v6-5
83554	72	CTG ...	LHA ...	Ribo-seq	CTG	weak	11	sORFs_org_Mouse	sORF	3T3, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, Spleen_B_cell, Testis, v6-5
1273345	75	AGG ...	RKM ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	sORF	E14
617184	30	ATG ...	MRQ ...	Ribo-seq	ATG	weak	5	sORFs_org_Mouse	sORF	3T3, E14, Liver
6556	42	ATG ...	MEQ ...	Ribo-seq	ATG		7	sORFs_org_Mouse	sORF	3T3, E14, Liver, MEF, Neutrophil, v6-5
86750	87	GTG ...	VVF ...	Ribo-seq	GTG	strong	12	sORFs_org_Mouse	sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, Spleen_B_cell, Testis, v6-5
83319	180	GTG ...	VQN ...	Ribo-seq	GTG	moderate	11	sORFs_org_Mouse	sORF	3T3, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, Spleen_B_cell, Testis, v6-5
83335	192	CTG ...	LAD ...	Ribo-seq	CTG	moderate	12	sORFs_org_Mouse	sORF	3T3, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, Testis, v6-5
617845	69	ATG ...	MTP ...	Ribo-seq	ATG	moderate	7	sORFs_org_Mouse	sORF	3T3, E14, Liver, MEF, NSC, v6-5
617123	42	TTG ...	LIT ...	Ribo-seq	TTG	weak	5	sORFs_org_Mouse	sORF	3T3, E14, Liver
1073435	30	GTG ...	VEG ...	Ribo-seq	GTG	strong	4	sORFs_org_Mouse	sORF	BMDC, MEF, Neutrophil, v6-5
1271306	144	AAG ...	KER ...	Ribo-seq	AAG	strong	1	sORFs_org_Mouse	sORF	E14
625740	75	ATG ...	MEQ ...	Ribo-seq	ATG		7	sORFs_org_Mouse	sORF	3T3, E14, Liver, MEF, Neutrophil, v6-5
85749	165	CTG ...	LED ...	Ribo-seq	CTG	strong	14	sORFs_org_Mouse	sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, Spleen_B_cell, Testis, v6-5

436521

ENSMUST00000194047

Uqcrc1-205

protein_coding

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
6994	87	ATG ...	MRL ...	Ribo-seq	ATG		2	sORFs_org_Mouse	sORF	MEF
6262	78	TTG ...	LTL ...	Ribo-seq	TTG		6	sORFs_org_Mouse	sORF	Brain, MEF, Neutrophil, NSC, Spleen_B_cell
763600	156	GTG ...	VWP ...	Ribo-seq	GTG		3	sORFs_org_Mouse	sORF	MEF, v6-5
6926	81	CTG ...	LRR ...	Ribo-seq	CTG		2	sORFs_org_Mouse	sORF	MEF
85932	42	GTG ...	VWP ...	Ribo-seq	GTG		6	sORFs_org_Mouse	sORF	Brain, MEF, Neutrophil, NSC, Spleen_B_cell
6556	42	ATG ...	MEQ ...	Ribo-seq	ATG		2	sORFs_org_Mouse	sORF	Brain, MEF
6873	99	CTG ...	LAV ...	Ribo-seq	CTG		2	sORFs_org_Mouse	sORF	MEF
274020	69	ATG ...	MEQ ...	Ribo-seq	ATG		1	sORFs_org_Mouse	sORF	MEF
274190	105	TTG ...	LTL ...	Ribo-seq	TTG		2	sORFs_org_Mouse	sORF	MEF
6458	60	ATG ...	MRL ...	Ribo-seq	ATG		7	sORFs_org_Mouse	sORF	BMDC, Brain, MEF, Neutrophil, NSC, Spleen_B_cell
5915	54	CTG ...	LRR ...	Ribo-seq	CTG		6	sORFs_org_Mouse	sORF	Brain, MEF, Neutrophil, NSC
6560	72	CTG ...	LAV ...	Ribo-seq	CTG		6	sORFs_org_Mouse	sORF	Brain, MEF, Neutrophil, NSC, Spleen_B_cell

83354

ENSMUST00000195738

Uqcrc1-208

nonsense_mediated_decay

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
6458	60	ATG ...	MRL ...	Ribo-seq	ATG		6	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3, B_cell, E14, MEF, Testis, v6-5
5915	54	CTG ...	LRR ...	Ribo-seq	CTG		7	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3, B_cell, Brain, E14, MEF, Testis, v6-5
86740	63	GTG ...	VAS ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative NMD Overlapping sORF Upstream	E14, Testis
86195	81	TTG ...	LDN ...	Ribo-seq	TTG		6	sORFs_org_Mouse	Alternative NMD Overlapping sORF Upstream	B_cell, E14, MEF, Testis, v6-5
86451	57	TTG ...	LVL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative CDS NMD sORF	Testis
84553	123	GTG ...	VGV ...	Ribo-seq	GTG		7	sORFs_org_Mouse	InCDS NMD Overlapping sORF	B_cell, Brain, E14, MEF, Testis, v6-5
85761	99	TTG ...	LSR ...	Ribo-seq	TTG		5	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3, B_cell, E14, Testis, v6-5
87099	162	CTG ...	LLR ...	Ribo-seq	CTG		6	sORFs_org_Mouse	Alternative NMD Overlapping sORF Upstream	3T3, B_cell, E14, MEF, Testis, v6-5
84763	111	GTG ...	VGA ...	Ribo-seq	GTG		5	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3, B_cell, E14, Testis, v6-5
86507	75	CTG ...	LIP ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Downstream NMD Overlapping sORF	B_cell, MEF, Testis
86044	144	TTG ...	LRG ...	Ribo-seq	TTG		6	sORFs_org_Mouse	Alternative NMD Overlapping sORF Upstream	3T3, B_cell, E14, MEF, Testis, v6-5
6556	42	ATG ...	MEQ ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	B_cell, Testis
86242	117	GTG ...	VWI ...	Ribo-seq	GTG		4	sORFs_org_Mouse	InCDS NMD Overlapping sORF	B_cell, E14, Testis, v6-5
87137	126	CTG ...	LPC ...	Ribo-seq	CTG		7	sORFs_org_Mouse	NMD Overlapping sORF Upstream	3T3, B_cell, E14, MEF, Testis, v6-5
84524	69	CTG ...	LRV ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative NMD Overlapping sORF Upstream	B_cell, E14, Testis
86558	123	CTG ...	LVP ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	B_cell, MEF, Testis, v6-5
6560	72	CTG ...	LAV ...	Ribo-seq	CTG		7	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3, B_cell, E14, MEF, Testis, v6-5
84359	105	GTG ...	VPE ...	Ribo-seq	GTG		7	sORFs_org_Mouse	Alternative NMD Overlapping sORF Upstream	3T3, B_cell, E14, MEF, Testis, v6-5
85714	159	CTG ...	LRL ...	Ribo-seq	CTG		6	sORFs_org_Mouse	Alternative NMD Overlapping sORF Upstream	3T3, B_cell, E14, MEF, Testis, v6-5
6262	78	TTG ...	LTL ...	Ribo-seq	TTG		7	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3, B_cell, E14, MEF, Testis, v6-5
85932	42	GTG ...	VWP ...	Ribo-seq	GTG		8	sORFs_org_Mouse	NMD Overlapping sORF Upstream	3T3, B_cell, Brain, E14, MEF, Testis, v6-5
83353	45	ATG ...	MSD ...	Ribo-seq	ATG		4	sORFs_org_Mouse	Alternative CDS NMD sORF	B_cell, Brain, MEF, Testis
759766	204	TTG ...	LAS ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative NMD Overlapping sORF Upstream	B_cell, E14
83856	48	TTG ...	LMS ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Alternative CDS NMD sORF	B_cell, MEF, Testis

435437

ENSMUST00000192918

Uqcrc1-203

retained_intron

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
85654	66	CTG ...	LRD ...	Ribo-seq	CTG	moderate	9	sORFs_org_Mouse	Intronic sORF	B_cell, E14, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, v6-5
86708	48	ATG ...	MAA ...	Ribo-seq	ATG		6	sORFs_org_Mouse	Intronic sORF	E14, MEF, R1E, Spleen_B_cell, v6-5
84021	87	CTG ...	LTY ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Neutrophil
83305	81	GTG ...	VDA ...	Ribo-seq	GTG	strong	8	sORFs_org_Mouse	Intronic sORF	E14, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, v6-5
83292	33	CTG ...	LCV ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Intronic sORF	E14, NSC, R1E
989819	42	CTG ...	LPP ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	Liver, NSC
83781	114	GTG ...	VCE ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Intronic sORF	Neutrophil, R1E, Spleen_B_cell
83629	63	CTG ...	LAE ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Neutrophil

1478380

ENSMUST00000194469

Uqcrc1-206

protein_coding

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
435377	39	TTG ...	LPE ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	sORF	MEF
86708	48	ATG ...	MAA ...	Ribo-seq	ATG		1	sORFs_org_Mouse	sORF	BMDC
434125	45	CTG ...	LIL ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	sORF	BMDC, MEF
86867	99	TTG ...	LLW ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	sORF	BMDC, MEF
434881	39	CTG ...	LGC ...	Ribo-seq	CTG	strong	2	sORFs_org_Mouse	sORF	BMDC, MEF
85158	96	CTG ...	LWL ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	sORF	BMDC, MEF
885005	150	ATG ...	MTA ...	Ribo-seq	ATG		3	sORFs_org_Mouse	sORF	BMDC, MEF
437968	30	ATG ...	MTA ...	Ribo-seq	ATG		1	sORFs_org_Mouse	sORF	BMDC

2985153

UNKNOWN_TRANSCRIPT

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
885005	150	ATG ...	MTA ...	Predicted	ATG		1	Samandi2017	sORF

ORFs

102 ORFs
8 known transcripts
164 ORF to known transcript associations

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF Length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Start codon

The start codon sequence of the ORF.

ORF annotations

A comma-separated list of all the annotations computed by our algorithm for the ORF. This list includes the annotations computed for the ORF for all transcripts. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of all the cell types in which the ORF has already been identified.

Transcripts

Display all the transcripts related to the entry.

1571623

243

CTG...

LLW...

CTG

Intronic
sORF

Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
989702	ENSMUST00000195387	Uqcrc1-207	retained_intron	Ribo-seq		1	sORFs_org_Mouse

86507

CTG...

LIP...

CTG

Intronic
sORF
Downstream
NMD
Overlapping

BMDC, Brain, Liver,
R1E, B_cell, MEF,
Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
989702	ENSMUST00000195387	Uqcrc1-207	retained_intron	Ribo-seq		4	sORFs_org_Mouse
83354	ENSMUST00000195738	Uqcrc1-208	nonsense_mediated_decay	Ribo-seq		3	sORFs_org_Mouse

1693324

GTG...

VRT...

GTG

InCDS
Overlapping
sORF

MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
5916	ENSMUST00000026743	Uqcrc1-201	protein_coding	Ribo-seq		2	sORFs_org_Mouse

85761

TTG...

LSR...

TTG

Intronic
sORF
Alternative
InCDS
NMD
Overlapping

BMDC, Brain, Liver,
R1E, 3T3, B_cell,
E14, Testis, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
989702	ENSMUST00000195387	Uqcrc1-207	retained_intron	Ribo-seq		5	sORFs_org_Mouse
83354	ENSMUST00000195738	Uqcrc1-208	nonsense_mediated_decay	Ribo-seq		5	sORFs_org_Mouse

1589661

CTG...

LWR...

CTG

InCDS
Overlapping
sORF

MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
5916	ENSMUST00000026743	Uqcrc1-201	protein_coding	Ribo-seq		2	sORFs_org_Mouse

435377

TTG...

LPE...

TTG

Intronic
sORF

3T3, B_cell, MEF,
Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
83293	ENSMUST00000193332	Uqcrc1-204	retained_intron	Ribo-seq	moderate	4	sORFs_org_Mouse
1478380	ENSMUST00000194469	Uqcrc1-206	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse

85158

CTG...

LWL...

CTG

Alternative
InCDS
Overlapping
sORF
Intronic

E14, Liver, v6-5,
3T3, B_cell, MEF,
Spleen_B_cell, Testis, BMDC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
5916	ENSMUST00000026743	Uqcrc1-201	protein_coding	Ribo-seq	weak	3	sORFs_org_Mouse
83293	ENSMUST00000193332	Uqcrc1-204	retained_intron	Ribo-seq	weak	5	sORFs_org_Mouse
1478380	ENSMUST00000194469	Uqcrc1-206	protein_coding	Ribo-seq	weak	2	sORFs_org_Mouse

617845

ATG...

MTP...

ATG

InCDS
Overlapping
sORF

Glioma, Liver, MEF,
MESC, 3T3, E14,
NSC, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
5916	ENSMUST00000026743	Uqcrc1-201	protein_coding	Ribo-seq	moderate	1	Johnstone2016
83320	ENSMUST00000192305	Uqcrc1-202	protein_coding	Ribo-seq	moderate	7	sORFs_org_Mouse

85834

201

CTG...

LPL...

CTG

Intronic
sORF

BMDC, Brain, NSC,
Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
83293	ENSMUST00000193332	Uqcrc1-204	retained_intron	Ribo-seq	moderate	4	sORFs_org_Mouse

84663

150

ATG...

MLL...

ATG

Intronic
sORF

3T3, B_cell, Spleen_B_cell,
Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
83293	ENSMUST00000193332	Uqcrc1-204	retained_intron	Ribo-seq	weak	4	sORFs_org_Mouse

84396

162

CTG...

LSS...

CTG

Intronic
sORF

3T3, B_cell, MEF,
Spleen_B_cell, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
83293	ENSMUST00000193332	Uqcrc1-204	retained_intron	Ribo-seq		5	sORFs_org_Mouse

1269080

ACG...

TPP...

ACG

sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
83320	ENSMUST00000192305	Uqcrc1-202	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse

6558

TTG...

LWS...

TTG

sORF
InCDS
Overlapping

3T3, B_cell, Liver,
MEF, Neutrophil, NSC,
v6-5, Skin_tumor

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
83320	ENSMUST00000192305	Uqcrc1-202	protein_coding	Ribo-seq	moderate	8	sORFs_org_Mouse
5916	ENSMUST00000026743	Uqcrc1-201	protein_coding	Ribo-seq	moderate	2	sORFs_org_Mouse

6994

ATG...

MRL...

ATG

sORF
Alternative
InCDS
Overlapping

MEF, Brain, E14,
Liver, R1E, Skin_tumor

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
436521	ENSMUST00000194047	Uqcrc1-205	protein_coding	Ribo-seq		2	sORFs_org_Mouse
5916	ENSMUST00000026743	Uqcrc1-201	protein_coding	Ribo-seq		7	sORFs_org_Mouse

6458

ATG...

MRL...

ATG

Alternative
InCDS
NMD
Overlapping
sORF
Intronic

3T3, B_cell, E14,
MEF, Testis, v6-5,
Brain, Liver, Skin_tumor,
BMDC, R1E, Neutrophil,
NSC, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
83354	ENSMUST00000195738	Uqcrc1-208	nonsense_mediated_decay	Ribo-seq		6	sORFs_org_Mouse
5916	ENSMUST00000026743	Uqcrc1-201	protein_coding	Ribo-seq		5	sORFs_org_Mouse
989702	ENSMUST00000195387	Uqcrc1-207	retained_intron	Ribo-seq		4	sORFs_org_Mouse
436521	ENSMUST00000194047	Uqcrc1-205	protein_coding	Ribo-seq		7	sORFs_org_Mouse

5915

CTG...

LRR...

CTG

Alternative
InCDS
NMD
Overlapping
sORF
Intronic

3T3, B_cell, Brain,
E14, MEF, Testis,
v6-5, Liver, Skin_tumor,
BMDC, R1E, Neutrophil,
NSC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
83354	ENSMUST00000195738	Uqcrc1-208	nonsense_mediated_decay	Ribo-seq		7	sORFs_org_Mouse
5916	ENSMUST00000026743	Uqcrc1-201	protein_coding	Ribo-seq		2	sORFs_org_Mouse
989702	ENSMUST00000195387	Uqcrc1-207	retained_intron	Ribo-seq		5	sORFs_org_Mouse
436521	ENSMUST00000194047	Uqcrc1-205	protein_coding	Ribo-seq		6	sORFs_org_Mouse

1272480

ACG...

TGC...

ACG

Alternative
InCDS
Overlapping
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
5916	ENSMUST00000026743	Uqcrc1-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse

6560

CTG...

LAV...

CTG

Intronic
sORF
Alternative
InCDS
Overlapping
NMD

BMDC, Brain, Liver,
R1E, E14, Skin_tumor,
3T3, B_cell, MEF,
Testis, v6-5, Neutrophil,
NSC, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
989702	ENSMUST00000195387	Uqcrc1-207	retained_intron	Ribo-seq		5	sORFs_org_Mouse
5916	ENSMUST00000026743	Uqcrc1-201	protein_coding	Ribo-seq		4	sORFs_org_Mouse
83354	ENSMUST00000195738	Uqcrc1-208	nonsense_mediated_decay	Ribo-seq		7	sORFs_org_Mouse
436521	ENSMUST00000194047	Uqcrc1-205	protein_coding	Ribo-seq		6	sORFs_org_Mouse

86913

147

GTG...

VEH...

GTG

Intronic
sORF

3T3, B_cell, BMDC,
Brain, MEF, Neutrophil,
NSC, Spleen_B_cell, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
83293	ENSMUST00000193332	Uqcrc1-204	retained_intron	Ribo-seq		9	sORFs_org_Mouse

85654

CTG...

LRD...

CTG

Intronic
sORF

B_cell, E14, MEF,
Neutrophil, NSC, R1E,
Spleen_B_cell, v6-5, 3T3,
Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
435437	ENSMUST00000192918	Uqcrc1-203	retained_intron	Ribo-seq	moderate	9	sORFs_org_Mouse
83293	ENSMUST00000193332	Uqcrc1-204	retained_intron	Ribo-seq	moderate	2	sORFs_org_Mouse

86867

TTG...

LLW...

TTG

Intronic
sORF
Alternative
InCDS
Overlapping

3T3, B_cell, MEF,
Spleen_B_cell, Testis, E14,
Liver, v6-5, BMDC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
83293	ENSMUST00000193332	Uqcrc1-204	retained_intron	Ribo-seq	weak	5	sORFs_org_Mouse
5916	ENSMUST00000026743	Uqcrc1-201	protein_coding	Ribo-seq	weak	3	sORFs_org_Mouse
1478380	ENSMUST00000194469	Uqcrc1-206	protein_coding	Ribo-seq	weak	2	sORFs_org_Mouse

438863

CTG...

LTE...

CTG

Alternative
Overlapping
sORF
Upstream

B_cell, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
5916	ENSMUST00000026743	Uqcrc1-201	protein_coding	Ribo-seq		2	sORFs_org_Mouse

85856

150

CTG...

LAS...

CTG

Intronic
sORF

3T3, B_cell, MEF,
Spleen_B_cell, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
83293	ENSMUST00000193332	Uqcrc1-204	retained_intron	Ribo-seq		5	sORFs_org_Mouse

86708

ATG...

MAA...

ATG

Intronic
sORF

E14, MEF, R1E,
Spleen_B_cell, v6-5, BMDC,
3T3, B_cell, Neutrophil,
Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
435437	ENSMUST00000192918	Uqcrc1-203	retained_intron	Ribo-seq		6	sORFs_org_Mouse
1478380	ENSMUST00000194469	Uqcrc1-206	protein_coding	Ribo-seq		1	sORFs_org_Mouse
83293	ENSMUST00000193332	Uqcrc1-204	retained_intron	Ribo-seq	moderate	4	sORFs_org_Mouse

86669

132

GTG...

VIL...

GTG

sORF

3T3, BMDC, Brain,
E14, Liver, MEF,
Neutrophil, NSC, Testis,
v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
83320	ENSMUST00000192305	Uqcrc1-202	protein_coding	Ribo-seq	moderate	10	sORFs_org_Mouse

87131

201

GTG...

VEL...

GTG

sORF

3T3, BMDC, Brain,
E14, Liver, MEF,
Neutrophil, NSC, Spleen_B_cell,
Testis, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
83320	ENSMUST00000192305	Uqcrc1-202	protein_coding	Ribo-seq	strong	14	sORFs_org_Mouse

84343

CTG...

LVS...

CTG

Intronic
sORF

BMDC, Brain, Spleen_B_cell,
Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
83293	ENSMUST00000193332	Uqcrc1-204	retained_intron	Ribo-seq		4	sORFs_org_Mouse

759766

204

TTG...

LAS...

TTG

Intronic
sORF
Alternative
NMD
Overlapping
Upstream

Brain, Liver, R1E,
B_cell, E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
989702	ENSMUST00000195387	Uqcrc1-207	retained_intron	Ribo-seq		4	sORFs_org_Mouse
83354	ENSMUST00000195738	Uqcrc1-208	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse

85629

GTG...

VPG...

GTG

Intronic
sORF

B_cell, Brain, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
83293	ENSMUST00000193332	Uqcrc1-204	retained_intron	Ribo-seq		3	sORFs_org_Mouse

86242

117

GTG...

VWI...

GTG

Intronic
sORF
InCDS
NMD
Overlapping

BMDC, Brain, Liver,
R1E, B_cell, E14,
Testis, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
989702	ENSMUST00000195387	Uqcrc1-207	retained_intron	Ribo-seq		4	sORFs_org_Mouse
83354	ENSMUST00000195738	Uqcrc1-208	nonsense_mediated_decay	Ribo-seq		4	sORFs_org_Mouse

87099

162

CTG...

LLR...

CTG

Intronic
sORF
Alternative
NMD
Overlapping
Upstream

BMDC, Brain, Liver,
R1E, 3T3, B_cell,
E14, MEF, Testis,
v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
989702	ENSMUST00000195387	Uqcrc1-207	retained_intron	Ribo-seq		4	sORFs_org_Mouse
83354	ENSMUST00000195738	Uqcrc1-208	nonsense_mediated_decay	Ribo-seq		6	sORFs_org_Mouse

86740

GTG...

VAS...

GTG

Alternative
NMD
Overlapping
sORF
Upstream
Intronic

E14, Testis, BMDC,
Brain, Liver, R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
83354	ENSMUST00000195738	Uqcrc1-208	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse
989702	ENSMUST00000195387	Uqcrc1-207	retained_intron	Ribo-seq		4	sORFs_org_Mouse

84021

CTG...

LTY...

CTG

Intronic
sORF

Neutrophil, B_cell, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
435437	ENSMUST00000192918	Uqcrc1-203	retained_intron	Ribo-seq		1	sORFs_org_Mouse
83293	ENSMUST00000193332	Uqcrc1-204	retained_intron	Ribo-seq	weak	2	sORFs_org_Mouse

6262

TTG...

LTL...

TTG

sORF
Alternative
InCDS
Overlapping
Intronic
NMD

Brain, MEF, Neutrophil,
NSC, Spleen_B_cell, Liver,
Skin_tumor, BMDC, R1E,
3T3, B_cell, E14,
Testis, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
436521	ENSMUST00000194047	Uqcrc1-205	protein_coding	Ribo-seq		6	sORFs_org_Mouse
5916	ENSMUST00000026743	Uqcrc1-201	protein_coding	Ribo-seq		3	sORFs_org_Mouse
989702	ENSMUST00000195387	Uqcrc1-207	retained_intron	Ribo-seq		5	sORFs_org_Mouse
83354	ENSMUST00000195738	Uqcrc1-208	nonsense_mediated_decay	Ribo-seq		7	sORFs_org_Mouse

6926

CTG...

LRR...

CTG

Alternative
InCDS
Overlapping
sORF

B_cell, E14, Liver,
MEF, R1E, Skin_tumor

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
5916	ENSMUST00000026743	Uqcrc1-201	protein_coding	Ribo-seq		6	sORFs_org_Mouse
436521	ENSMUST00000194047	Uqcrc1-205	protein_coding	Ribo-seq		2	sORFs_org_Mouse

86873

GTG...

VTR...

GTG

Intronic
sORF

3T3, Spleen_B_cell, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
83293	ENSMUST00000193332	Uqcrc1-204	retained_intron	Ribo-seq		3	sORFs_org_Mouse

86195

TTG...

LDN...

TTG

Alternative
NMD
Overlapping
sORF
Upstream
Intronic

B_cell, E14, MEF,
Testis, v6-5, BMDC,
Brain, Liver, R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
83354	ENSMUST00000195738	Uqcrc1-208	nonsense_mediated_decay	Ribo-seq		6	sORFs_org_Mouse
989702	ENSMUST00000195387	Uqcrc1-207	retained_intron	Ribo-seq		4	sORFs_org_Mouse

763600

156

GTG...

VWP...

GTG

sORF
Alternative
InCDS
Overlapping

MEF, v6-5, B_cell,
Liver, R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
436521	ENSMUST00000194047	Uqcrc1-205	protein_coding	Ribo-seq		3	sORFs_org_Mouse
5916	ENSMUST00000026743	Uqcrc1-201	protein_coding	Ribo-seq		5	sORFs_org_Mouse

1270376

150

ATC...

IEK...

ATC

sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
83320	ENSMUST00000192305	Uqcrc1-202	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse

86451

TTG...

LVL...

TTG

Alternative
CDS
NMD
sORF

Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
83354	ENSMUST00000195738	Uqcrc1-208	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

83437

126

CTG...

LRE...

CTG

sORF

3T3, B_cell, BMDC,
Brain, E14, Liver,
MEF, Neutrophil, NSC,
Testis, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
83320	ENSMUST00000192305	Uqcrc1-202	protein_coding	Ribo-seq	moderate	11	sORFs_org_Mouse

87090

ATG...

MPC...

ATG

Intronic
sORF

BMDC, Brain, NSC,
Spleen_B_cell, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
83293	ENSMUST00000193332	Uqcrc1-204	retained_intron	Ribo-seq		6	sORFs_org_Mouse

84085

GTG...

VSP...

GTG

Intronic
sORF

3T3, B_cell, BMDC,
Brain, MEF, Neutrophil,
NSC, Spleen_B_cell, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
83293	ENSMUST00000193332	Uqcrc1-204	retained_intron	Ribo-seq		9	sORFs_org_Mouse

83305

GTG...

VDA...

GTG

Intronic
sORF

E14, MEF, Neutrophil,
NSC, R1E, Spleen_B_cell,
v6-5, 3T3, B_cell,
Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
435437	ENSMUST00000192918	Uqcrc1-203	retained_intron	Ribo-seq	strong	8	sORFs_org_Mouse
83293	ENSMUST00000193332	Uqcrc1-204	retained_intron	Ribo-seq	strong	3	sORFs_org_Mouse

84524

CTG...

LRV...

CTG

Intronic
sORF
Alternative
NMD
Overlapping
Upstream

BMDC, Brain, Liver,
R1E, B_cell, E14,
Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
989702	ENSMUST00000195387	Uqcrc1-207	retained_intron	Ribo-seq		4	sORFs_org_Mouse
83354	ENSMUST00000195738	Uqcrc1-208	nonsense_mediated_decay	Ribo-seq		3	sORFs_org_Mouse

437968

ATG...

MTA...

ATG

Intronic
sORF

3T3, B_cell, MEF,
Spleen_B_cell, BMDC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
83293	ENSMUST00000193332	Uqcrc1-204	retained_intron	Ribo-seq	moderate	4	sORFs_org_Mouse
1478380	ENSMUST00000194469	Uqcrc1-206	protein_coding	Ribo-seq		1	sORFs_org_Mouse

84553

123

GTG...

VGV...

GTG

InCDS
NMD
Overlapping
sORF
Intronic

B_cell, Brain, E14,
MEF, Testis, v6-5,
BMDC, Liver, R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
83354	ENSMUST00000195738	Uqcrc1-208	nonsense_mediated_decay	Ribo-seq		7	sORFs_org_Mouse
989702	ENSMUST00000195387	Uqcrc1-207	retained_intron	Ribo-seq		4	sORFs_org_Mouse

6556

ATG...

MEQ...

ATG

Alternative
InCDS
Overlapping
sORF
Intronic
NMD

Brain, Liver, MEF,
Skin_tumor, BMDC, R1E,
3T3, E14, Neutrophil,
v6-5, B_cell, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
5916	ENSMUST00000026743	Uqcrc1-201	protein_coding	Ribo-seq		4	sORFs_org_Mouse
989702	ENSMUST00000195387	Uqcrc1-207	retained_intron	Ribo-seq		4	sORFs_org_Mouse
83320	ENSMUST00000192305	Uqcrc1-202	protein_coding	Ribo-seq		7	sORFs_org_Mouse
83354	ENSMUST00000195738	Uqcrc1-208	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse
436521	ENSMUST00000194047	Uqcrc1-205	protein_coding	Ribo-seq		2	sORFs_org_Mouse

1271129

AGG...

RPS...

AGG

Alternative
InCDS
Overlapping
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
5916	ENSMUST00000026743	Uqcrc1-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse

85932

GTG...

VWP...

GTG

sORF
Intronic
Alternative
InCDS
Overlapping
NMD
Upstream

Brain, MEF, Neutrophil,
NSC, Spleen_B_cell, BMDC,
Liver, R1E, 3T3,
B_cell, E14, Testis,
v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
436521	ENSMUST00000194047	Uqcrc1-205	protein_coding	Ribo-seq		6	sORFs_org_Mouse
989702	ENSMUST00000195387	Uqcrc1-207	retained_intron	Ribo-seq		5	sORFs_org_Mouse
5916	ENSMUST00000026743	Uqcrc1-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse
83354	ENSMUST00000195738	Uqcrc1-208	nonsense_mediated_decay	Ribo-seq		8	sORFs_org_Mouse

83292

CTG...

LCV...

CTG

Intronic
sORF

E14, NSC, R1E,
3T3, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
435437	ENSMUST00000192918	Uqcrc1-203	retained_intron	Ribo-seq	weak	3	sORFs_org_Mouse
83293	ENSMUST00000193332	Uqcrc1-204	retained_intron	Ribo-seq	weak	2	sORFs_org_Mouse

84697

CTG...

LGA...

CTG

Intronic
sORF

3T3, B_cell, Spleen_B_cell,
Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
83293	ENSMUST00000193332	Uqcrc1-204	retained_intron	Ribo-seq		4	sORFs_org_Mouse

83554

CTG...

LHA...

CTG

sORF

3T3, BMDC, Brain,
E14, Liver, MEF,
Neutrophil, NSC, Spleen_B_cell,
Testis, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
83320	ENSMUST00000192305	Uqcrc1-202	protein_coding	Ribo-seq	weak	11	sORFs_org_Mouse

1273345

AGG...

RKM...

AGG

sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
83320	ENSMUST00000192305	Uqcrc1-202	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse

83629

CTG...

LAE...

CTG

Intronic
sORF

Testis, Neutrophil

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
83293	ENSMUST00000193332	Uqcrc1-204	retained_intron	Ribo-seq	moderate	1	sORFs_org_Mouse
435437	ENSMUST00000192918	Uqcrc1-203	retained_intron	Ribo-seq		1	sORFs_org_Mouse

989819

CTG...

LPP...

CTG

Intronic
sORF

Liver, NSC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
435437	ENSMUST00000192918	Uqcrc1-203	retained_intron	Ribo-seq		2	sORFs_org_Mouse

87137

126

CTG...

LPC...

CTG

Alternative
InCDS
Overlapping
sORF
NMD
Upstream
Intronic

Brain, Liver, 3T3,
B_cell, E14, MEF,
Testis, v6-5, BMDC,
R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
5916	ENSMUST00000026743	Uqcrc1-201	protein_coding	Ribo-seq		2	sORFs_org_Mouse
83354	ENSMUST00000195738	Uqcrc1-208	nonsense_mediated_decay	Ribo-seq		7	sORFs_org_Mouse
989702	ENSMUST00000195387	Uqcrc1-207	retained_intron	Ribo-seq		5	sORFs_org_Mouse

435319

ATG...

MTP...

ATG

Intronic
sORF

3T3, BMDC, Brain,
NSC, Spleen_B_cell, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
83293	ENSMUST00000193332	Uqcrc1-204	retained_intron	Ribo-seq	moderate	6	sORFs_org_Mouse

83781

114

GTG...

VCE...

GTG

Intronic
sORF

Neutrophil, R1E, Spleen_B_cell,
B_cell, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
435437	ENSMUST00000192918	Uqcrc1-203	retained_intron	Ribo-seq		3	sORFs_org_Mouse
83293	ENSMUST00000193332	Uqcrc1-204	retained_intron	Ribo-seq	weak	2	sORFs_org_Mouse

85714

159

CTG...

LRL...

CTG

Intronic
sORF
Alternative
NMD
Overlapping
Upstream

BMDC, Brain, Liver,
R1E, 3T3, B_cell,
E14, MEF, Testis,
v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
989702	ENSMUST00000195387	Uqcrc1-207	retained_intron	Ribo-seq		4	sORFs_org_Mouse
83354	ENSMUST00000195738	Uqcrc1-208	nonsense_mediated_decay	Ribo-seq		6	sORFs_org_Mouse

437770

ATG...

MCC...

ATG

Intronic
sORF

BMDC, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
83293	ENSMUST00000193332	Uqcrc1-204	retained_intron	Ribo-seq		2	sORFs_org_Mouse

86044

144

TTG...

LRG...

TTG

Intronic
sORF
Alternative
NMD
Overlapping
Upstream

BMDC, Brain, Liver,
R1E, 3T3, B_cell,
E14, MEF, Testis,
v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
989702	ENSMUST00000195387	Uqcrc1-207	retained_intron	Ribo-seq		4	sORFs_org_Mouse
83354	ENSMUST00000195738	Uqcrc1-208	nonsense_mediated_decay	Ribo-seq		6	sORFs_org_Mouse

84763

111

GTG...

VGA...

GTG

Alternative
InCDS
NMD
Overlapping
sORF
Intronic

3T3, B_cell, E14,
Testis, v6-5, BMDC,
Brain, Liver, R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
83354	ENSMUST00000195738	Uqcrc1-208	nonsense_mediated_decay	Ribo-seq		5	sORFs_org_Mouse
989702	ENSMUST00000195387	Uqcrc1-207	retained_intron	Ribo-seq		4	sORFs_org_Mouse

86031

ATG...

MKK...

ATG

Intronic
sORF

BMDC, Brain, MEF,
NSC, Spleen_B_cell, Testis,
v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
83293	ENSMUST00000193332	Uqcrc1-204	retained_intron	Ribo-seq		7	sORFs_org_Mouse

617184

ATG...

MRQ...

ATG

sORF

3T3, E14, Liver

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
83320	ENSMUST00000192305	Uqcrc1-202	protein_coding	Ribo-seq	weak	5	sORFs_org_Mouse

83811

186

GTG...

VAI...

GTG

Intronic
sORF

Brain, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
83293	ENSMUST00000193332	Uqcrc1-204	retained_intron	Ribo-seq	moderate	2	sORFs_org_Mouse

84687

159

GTG...

VPQ...

GTG

Intronic
sORF

Spleen_B_cell, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
83293	ENSMUST00000193332	Uqcrc1-204	retained_intron	Ribo-seq	weak	2	sORFs_org_Mouse

434125

CTG...

LIL...

CTG

sORF
Intronic

BMDC, MEF, 3T3,
B_cell, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
1478380	ENSMUST00000194469	Uqcrc1-206	protein_coding	Ribo-seq	moderate	2	sORFs_org_Mouse
83293	ENSMUST00000193332	Uqcrc1-204	retained_intron	Ribo-seq	moderate	4	sORFs_org_Mouse

86750

GTG...

VVF...

GTG

sORF

3T3, B_cell, BMDC,
Brain, E14, Liver,
MEF, Neutrophil, NSC,
Spleen_B_cell, Testis, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
83320	ENSMUST00000192305	Uqcrc1-202	protein_coding	Ribo-seq	strong	12	sORFs_org_Mouse

85321

108

TTG...

LSS...

TTG

Intronic
sORF

B_cell, BMDC, Brain,
MEF, Neutrophil, NSC,
Spleen_B_cell, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
83293	ENSMUST00000193332	Uqcrc1-204	retained_intron	Ribo-seq		8	sORFs_org_Mouse

83319

180

GTG...

VQN...

GTG

sORF

3T3, BMDC, Brain,
E14, Liver, MEF,
Neutrophil, NSC, Spleen_B_cell,
Testis, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
83320	ENSMUST00000192305	Uqcrc1-202	protein_coding	Ribo-seq	moderate	11	sORFs_org_Mouse

84312

132

CTG...

LLD...

CTG

Intronic
sORF

3T3, B_cell, BMDC,
Brain, MEF, Neutrophil,
NSC, Spleen_B_cell, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
83293	ENSMUST00000193332	Uqcrc1-204	retained_intron	Ribo-seq		9	sORFs_org_Mouse

83335

192

CTG...

LAD...

CTG

sORF

3T3, BMDC, Brain,
E14, Liver, MEF,
Neutrophil, NSC, Testis,
v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
83320	ENSMUST00000192305	Uqcrc1-202	protein_coding	Ribo-seq	moderate	12	sORFs_org_Mouse

86834

144

CTG...

LIL...

CTG

Intronic
sORF

3T3, B_cell, Spleen_B_cell,
Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
83293	ENSMUST00000193332	Uqcrc1-204	retained_intron	Ribo-seq	weak	4	sORFs_org_Mouse

84805

CTG...

LLG...

CTG

Intronic
sORF

3T3, B_cell, Spleen_B_cell,
Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
83293	ENSMUST00000193332	Uqcrc1-204	retained_intron	Ribo-seq		4	sORFs_org_Mouse

885005

150

ATG...

MTA...

ATG

sORF
Alternative
InCDS
Overlapping

E14, Glioma,
Liver, MEF, MESC,
BMDC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
2985153	UNKNOWN_TRANSCRIPT			Predicted		1	Samandi2017
5916	ENSMUST00000026743	Uqcrc1-201	protein_coding	Ribo-seq		4	sORFs_org_Mouse Johnstone2016
1478380	ENSMUST00000194469	Uqcrc1-206	protein_coding	Ribo-seq		3	sORFs_org_Mouse

255406

CTG...

LTE...

CTG

Alternative
Overlapping
sORF
Upstream

B_cell, Brain, Liver,
R1E, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
5916	ENSMUST00000026743	Uqcrc1-201	protein_coding	Ribo-seq		5	sORFs_org_Mouse

434881

CTG...

LGC...

CTG

Intronic
sORF

3T3, B_cell, MEF,
Spleen_B_cell, BMDC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
83293	ENSMUST00000193332	Uqcrc1-204	retained_intron	Ribo-seq	strong	4	sORFs_org_Mouse
1478380	ENSMUST00000194469	Uqcrc1-206	protein_coding	Ribo-seq	strong	2	sORFs_org_Mouse

85881

TTG...

LPL...

TTG

Intronic
sORF

Spleen_B_cell, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
83293	ENSMUST00000193332	Uqcrc1-204	retained_intron	Ribo-seq	weak	2	sORFs_org_Mouse

1275943

210

AGG...

RPS...

AGG

Alternative
InCDS
Overlapping
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
5916	ENSMUST00000026743	Uqcrc1-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse

86648

129

CTG...

LDL...

CTG

Intronic
sORF

3T3, B_cell, BMDC,
Brain, MEF, Neutrophil,
NSC, Spleen_B_cell, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
83293	ENSMUST00000193332	Uqcrc1-204	retained_intron	Ribo-seq		9	sORFs_org_Mouse

83353

ATG...

MSD...

ATG

Intronic
sORF
Alternative
CDS
NMD

Brain, R1E, B_cell,
MEF, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
989702	ENSMUST00000195387	Uqcrc1-207	retained_intron	Ribo-seq		2	sORFs_org_Mouse
83354	ENSMUST00000195738	Uqcrc1-208	nonsense_mediated_decay	Ribo-seq		4	sORFs_org_Mouse

85246

CTG...

LAA...

CTG

Intronic
sORF

3T3, Spleen_B_cell, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
83293	ENSMUST00000193332	Uqcrc1-204	retained_intron	Ribo-seq	moderate	3	sORFs_org_Mouse

436697

GTG...

VWN...

GTG

Intronic
sORF

B_cell, BMDC, MEF,
Neutrophil, NSC, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
83293	ENSMUST00000193332	Uqcrc1-204	retained_intron	Ribo-seq	weak	8	sORFs_org_Mouse

617123

TTG...

LIT...

TTG

sORF

3T3, E14, Liver

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
83320	ENSMUST00000192305	Uqcrc1-202	protein_coding	Ribo-seq	weak	5	sORFs_org_Mouse

88035

240

CTG...

LPC...

CTG

Alternative
InCDS
Overlapping
sORF

B_cell, BMDC, Liver,
MEF, Testis, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
5916	ENSMUST00000026743	Uqcrc1-201	protein_coding	Ribo-seq		7	sORFs_org_Mouse

1073435

GTG...

VEG...

GTG

sORF

BMDC, MEF, Neutrophil,
v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
83320	ENSMUST00000192305	Uqcrc1-202	protein_coding	Ribo-seq	strong	4	sORFs_org_Mouse

84359

105

GTG...

VPE...

GTG

Intronic
sORF
Alternative
NMD
Overlapping
Upstream

BMDC, Brain, Liver,
R1E, 3T3, B_cell,
E14, MEF, Testis,
v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
989702	ENSMUST00000195387	Uqcrc1-207	retained_intron	Ribo-seq		4	sORFs_org_Mouse
83354	ENSMUST00000195738	Uqcrc1-208	nonsense_mediated_decay	Ribo-seq		7	sORFs_org_Mouse

83856

TTG...

LMS...

TTG

Intronic
sORF
Alternative
CDS
NMD

Brain, R1E, B_cell,
MEF, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
989702	ENSMUST00000195387	Uqcrc1-207	retained_intron	Ribo-seq		2	sORFs_org_Mouse
83354	ENSMUST00000195738	Uqcrc1-208	nonsense_mediated_decay	Ribo-seq		3	sORFs_org_Mouse

1275071

165

ACG...

TGC...

ACG

Alternative
InCDS
Overlapping
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
5916	ENSMUST00000026743	Uqcrc1-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse

1570656

267

ATG...

MAE...

ATG

Intronic
sORF

Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
989702	ENSMUST00000195387	Uqcrc1-207	retained_intron	Ribo-seq		1	sORFs_org_Mouse

86558

123

CTG...

LVP...

CTG

Alternative
InCDS
NMD
Overlapping
sORF
Intronic

B_cell, MEF, Testis,
v6-5, BMDC, Brain,
R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
83354	ENSMUST00000195738	Uqcrc1-208	nonsense_mediated_decay	Ribo-seq		5	sORFs_org_Mouse
989702	ENSMUST00000195387	Uqcrc1-207	retained_intron	Ribo-seq		3	sORFs_org_Mouse

1271306

144

AAG...

KER...

AAG

sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
83320	ENSMUST00000192305	Uqcrc1-202	protein_coding	Ribo-seq	strong	1	sORFs_org_Mouse

6873

CTG...

LAV...

CTG

sORF
Alternative
InCDS
Overlapping

MEF, Brain, E14,
Liver, R1E, Skin_tumor

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
436521	ENSMUST00000194047	Uqcrc1-205	protein_coding	Ribo-seq		2	sORFs_org_Mouse
5916	ENSMUST00000026743	Uqcrc1-201	protein_coding	Ribo-seq		8	sORFs_org_Mouse

274020

ATG...

MEQ...

ATG

sORF
Alternative
InCDS
Overlapping

MEF, B_cell, Brain,
Liver, R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
436521	ENSMUST00000194047	Uqcrc1-205	protein_coding	Ribo-seq		1	sORFs_org_Mouse
5916	ENSMUST00000026743	Uqcrc1-201	protein_coding	Ribo-seq		5	sORFs_org_Mouse

274190

105

TTG...

LTL...

TTG

Alternative
InCDS
Overlapping
sORF

B_cell, Brain, Liver,
MEF, R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
5916	ENSMUST00000026743	Uqcrc1-201	protein_coding	Ribo-seq		6	sORFs_org_Mouse
436521	ENSMUST00000194047	Uqcrc1-205	protein_coding	Ribo-seq		2	sORFs_org_Mouse

625740

ATG...

MEQ...

ATG

sORF

3T3, E14, Liver,
MEF, Neutrophil, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
83320	ENSMUST00000192305	Uqcrc1-202	protein_coding	Ribo-seq		7	sORFs_org_Mouse

83894

135

GTG...

VAN...

GTG

Intronic
sORF

3T3, B_cell, MEF,
Spleen_B_cell, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
83293	ENSMUST00000193332	Uqcrc1-204	retained_intron	Ribo-seq		5	sORFs_org_Mouse

85749

165

CTG...

LED...

CTG

sORF

3T3, B_cell, BMDC,
Brain, E14, Liver,
MEF, Neutrophil, NSC,
Spleen_B_cell, Testis, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
83320	ENSMUST00000192305	Uqcrc1-202	protein_coding	Ribo-seq	strong	14	sORFs_org_Mouse

885201

ATG...

MTW...

ATG

Alternative
InCDS
Overlapping
sORF

E14, Glioma, Liver,
MEF, MESC, NSC,
R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
5916	ENSMUST00000026743	Uqcrc1-201	protein_coding	Ribo-seq		5	sORFs_org_Mouse Johnstone2016

85922

GTG...

VYE...

GTG

Intronic
sORF

B_cell, BMDC, Brain,
MEF, Neutrophil, NSC,
Spleen_B_cell, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
83293	ENSMUST00000193332	Uqcrc1-204	retained_intron	Ribo-seq		8	sORFs_org_Mouse

85293

195

TTG...

LAH...

TTG

Intronic
sORF

Brain, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
83293	ENSMUST00000193332	Uqcrc1-204	retained_intron	Ribo-seq	moderate	2	sORFs_org_Mouse

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