Gene NCBI:19073 | MetamORF

Gene

ID CARD

NCBI:19073

Aliases

ENSMUSG00000020077
MGI:97756, NCBI:19073, OFF:Srgn
Prg, Prg1, Sgc
Srgn

Chromosome

Transcripts

23 ORFs
3 known transcripts
49 ORF to known transcript associations

MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

ORFs

Display all the transcripts related to the entry.

164591

ENSMUST00000020271

Srgn-201

protein_coding

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
189699	81	ATG ...	MMT ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC, Brain
4306	42	TTG ...	LRT ...	Ribo-seq	TTG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC, Brain
285333	66	GTG ...	VGP ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, BMDC, Brain
276234	48	CTG ...	LAP ...	Ribo-seq	CTG	strong	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC, Brain
178412	78	ATG ...	MTM ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC, Brain
7547	30	CTG ...	LHR ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, BMDC
286557	72	ATG ...	MGQ ...	Ribo-seq	ATG	strong	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC, Brain
5770	93	CTG ...	LLG ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC
445036	147	TTG ...	LSW ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC
199528	36	CTG ...	LAR ...	Ribo-seq	CTG	strong	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC, Brain
3354	51	ATG ...	MAF ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC, Brain
267505	30	ATG ...	MNP ...	Ribo-seq	ATG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC, Brain
254746	57	CTG ...	LQT ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, BMDC, Brain
444111	192	GTG ...	VEP ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	B_cell

3355

ENSMUST00000160987

Srgn-204

protein_coding

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
189699	81	ATG ...	MMT ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Spleen_B_cell
276234	48	CTG ...	LAP ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Spleen_B_cell
7547	30	CTG ...	LHR ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	InCDS Overlapping sORF	Skin_tumor, Spleen_B_cell
831037	84	GTG ...	VTC ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	B_cell
3354	51	ATG ...	MAF ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Skin_tumor, Spleen_B_cell
5770	93	CTG ...	LLG ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Skin_tumor, Spleen_B_cell
254746	57	CTG ...	LQT ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	Spleen_B_cell
758220	60	CTG ...	LRF ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	B_cell
4306	42	TTG ...	LRT ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Skin_tumor, Spleen_B_cell
286557	72	ATG ...	MGQ ...	Ribo-seq	ATG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Spleen_B_cell
199528	36	CTG ...	LAR ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Spleen_B_cell
178412	78	ATG ...	MTM ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Spleen_B_cell
285333	66	GTG ...	VGP ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	Spleen_B_cell
444111	192	GTG ...	VEP ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	Spleen_B_cell
445036	147	TTG ...	LSW ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Spleen_B_cell
267505	30	ATG ...	MNP ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Spleen_B_cell

904380

ENSMUST00000162161

Srgn-205

protein_coding

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
254746	57	CTG ...	LQT ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	InCDS Overlapping sORF	Neutrophil, v6-5
178412	78	ATG ...	MTM ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Neutrophil
7547	30	CTG ...	LHR ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	v6-5
929061	168	AGG ...	RFP ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
285333	66	GTG ...	VGP ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	InCDS Overlapping sORF	Neutrophil, v6-5
445036	147	TTG ...	LSW ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Neutrophil
904379	156	TTG ...	LSW ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
444111	192	GTG ...	VEP ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	Neutrophil
286557	72	ATG ...	MGQ ...	Ribo-seq	ATG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Neutrophil
906801	96	ATT ...	ISS ...	Ribo-seq	ATT	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
189699	81	ATG ...	MMT ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	Glioma, Liver, MEF, MESC, Neutrophil
927691	84	ATT ...	IMM ...	Ribo-seq	ATT	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
3354	51	ATG ...	MAF ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	Glioma, Liver, MEF, MESC, Neutrophil
4306	42	TTG ...	LRT ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Neutrophil
926340	177	AGG ...	RFP ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
1060757	201	GTG ...	VEP ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	Neutrophil
267505	30	ATG ...	MNP ...	Ribo-seq	ATG	weak	1	Johnstone2016	Alternative InCDS Overlapping sORF	Glioma, Liver, MEF, MESC
5770	93	CTG ...	LLG ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Neutrophil
914561	111	AAG ...	KDP ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC

ORFs

23 ORFs
3 known transcripts
49 ORF to known transcript associations

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF Length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Start codon

The start codon sequence of the ORF.

ORF annotations

A comma-separated list of all the annotations computed by our algorithm for the ORF. This list includes the annotations computed for the ORF for all transcripts. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of all the cell types in which the ORF has already been identified.

Transcripts

Display all the transcripts related to the entry.

189699

ATG...

MMT...

ATG

Alternative
InCDS
Overlapping
sORF

B_cell, BMDC, Brain,
Spleen_B_cell, Glioma, Liver,
MEF, MESC, Neutrophil

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
164591	ENSMUST00000020271	Srgn-201	protein_coding	Ribo-seq	moderate	3	sORFs_org_Mouse
3355	ENSMUST00000160987	Srgn-204	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse
904380	ENSMUST00000162161	Srgn-205	protein_coding	Ribo-seq	moderate	2	sORFs_org_Mouse Johnstone2016

4306

TTG...

LRT...

TTG

Alternative
InCDS
Overlapping
sORF

B_cell, BMDC, Brain,
Skin_tumor, Spleen_B_cell, Neutrophil

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
164591	ENSMUST00000020271	Srgn-201	protein_coding	Ribo-seq	weak	3	sORFs_org_Mouse
3355	ENSMUST00000160987	Srgn-204	protein_coding	Ribo-seq	weak	2	sORFs_org_Mouse
904380	ENSMUST00000162161	Srgn-205	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse

254746

CTG...

LQT...

CTG

InCDS
Overlapping
sORF

Neutrophil, v6-5, Spleen_B_cell,
B_cell, BMDC, Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
904380	ENSMUST00000162161	Srgn-205	protein_coding	Ribo-seq	weak	2	sORFs_org_Mouse
3355	ENSMUST00000160987	Srgn-204	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse
164591	ENSMUST00000020271	Srgn-201	protein_coding	Ribo-seq	weak	3	sORFs_org_Mouse

178412

ATG...

MTM...

ATG

Alternative
InCDS
Overlapping
sORF

Neutrophil, B_cell, BMDC,
Brain, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
904380	ENSMUST00000162161	Srgn-205	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse
164591	ENSMUST00000020271	Srgn-201	protein_coding	Ribo-seq	moderate	3	sORFs_org_Mouse
3355	ENSMUST00000160987	Srgn-204	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse

276234

CTG...

LAP...

CTG

Alternative
InCDS
Overlapping
sORF

Spleen_B_cell, B_cell, BMDC,
Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
3355	ENSMUST00000160987	Srgn-204	protein_coding	Ribo-seq	strong	1	sORFs_org_Mouse
164591	ENSMUST00000020271	Srgn-201	protein_coding	Ribo-seq	strong	3	sORFs_org_Mouse

7547

CTG...

LHR...

CTG

InCDS
Overlapping
sORF

v6-5, Skin_tumor, Spleen_B_cell,
B_cell, BMDC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
904380	ENSMUST00000162161	Srgn-205	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse
3355	ENSMUST00000160987	Srgn-204	protein_coding	Ribo-seq	moderate	2	sORFs_org_Mouse
164591	ENSMUST00000020271	Srgn-201	protein_coding	Ribo-seq	moderate	2	sORFs_org_Mouse

929061

168

AGG...

RFP...

AGG

Alternative
InCDS
Overlapping
sORF

BMDC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
904380	ENSMUST00000162161	Srgn-205	protein_coding	Ribo-seq		1	sORFs_org_Mouse

285333

GTG...

VGP...

GTG

InCDS
Overlapping
sORF

Neutrophil, v6-5, B_cell,
BMDC, Brain, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
904380	ENSMUST00000162161	Srgn-205	protein_coding	Ribo-seq	moderate	2	sORFs_org_Mouse
164591	ENSMUST00000020271	Srgn-201	protein_coding	Ribo-seq	moderate	3	sORFs_org_Mouse
3355	ENSMUST00000160987	Srgn-204	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse

445036

147

TTG...

LSW...

TTG

Alternative
InCDS
Overlapping
sORF

BMDC, Neutrophil, B_cell,
Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
904380	ENSMUST00000162161	Srgn-205	protein_coding	Ribo-seq		2	sORFs_org_Mouse
164591	ENSMUST00000020271	Srgn-201	protein_coding	Ribo-seq		2	sORFs_org_Mouse
3355	ENSMUST00000160987	Srgn-204	protein_coding	Ribo-seq		1	sORFs_org_Mouse

904379

156

TTG...

LSW...

TTG

Alternative
InCDS
Overlapping
sORF

BMDC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
904380	ENSMUST00000162161	Srgn-205	protein_coding	Ribo-seq		1	sORFs_org_Mouse

444111

192

GTG...

VEP...

GTG

Alternative
Overlapping
sORF
Upstream

Neutrophil, Spleen_B_cell, B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
904380	ENSMUST00000162161	Srgn-205	protein_coding	Ribo-seq		1	sORFs_org_Mouse
3355	ENSMUST00000160987	Srgn-204	protein_coding	Ribo-seq		1	sORFs_org_Mouse
164591	ENSMUST00000020271	Srgn-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse

831037

GTG...

VTC...

GTG

Alternative
sORF
Upstream

B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
3355	ENSMUST00000160987	Srgn-204	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse

286557

ATG...

MGQ...

ATG

Alternative
InCDS
Overlapping
sORF

B_cell, BMDC, Brain,
Neutrophil, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
164591	ENSMUST00000020271	Srgn-201	protein_coding	Ribo-seq	strong	3	sORFs_org_Mouse
904380	ENSMUST00000162161	Srgn-205	protein_coding	Ribo-seq	strong	1	sORFs_org_Mouse
3355	ENSMUST00000160987	Srgn-204	protein_coding	Ribo-seq	strong	1	sORFs_org_Mouse

5770

CTG...

LLG...

CTG

Alternative
InCDS
Overlapping
sORF

B_cell, BMDC, Skin_tumor,
Spleen_B_cell, Neutrophil

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
164591	ENSMUST00000020271	Srgn-201	protein_coding	Ribo-seq	moderate	2	sORFs_org_Mouse
3355	ENSMUST00000160987	Srgn-204	protein_coding	Ribo-seq	moderate	2	sORFs_org_Mouse
904380	ENSMUST00000162161	Srgn-205	protein_coding	Ribo-seq	moderate	2	sORFs_org_Mouse

906801

ATT...

ISS...

ATT

Alternative
InCDS
Overlapping
sORF

BMDC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
904380	ENSMUST00000162161	Srgn-205	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse

3354

ATG...

MAF...

ATG

Alternative
InCDS
Overlapping
sORF

Skin_tumor, Spleen_B_cell, Glioma,
Liver, MEF, MESC,
Neutrophil, B_cell, BMDC,
Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
3355	ENSMUST00000160987	Srgn-204	protein_coding	Ribo-seq	moderate	2	sORFs_org_Mouse
904380	ENSMUST00000162161	Srgn-205	protein_coding	Ribo-seq	moderate	2	sORFs_org_Mouse Johnstone2016
164591	ENSMUST00000020271	Srgn-201	protein_coding	Ribo-seq	moderate	3	sORFs_org_Mouse

758220

CTG...

LRF...

CTG

Alternative
sORF
Upstream

B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
3355	ENSMUST00000160987	Srgn-204	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse

199528

CTG...

LAR...

CTG

Alternative
InCDS
Overlapping
sORF

Spleen_B_cell, B_cell, BMDC,
Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
3355	ENSMUST00000160987	Srgn-204	protein_coding	Ribo-seq	strong	1	sORFs_org_Mouse
164591	ENSMUST00000020271	Srgn-201	protein_coding	Ribo-seq	strong	3	sORFs_org_Mouse

927691

ATT...

IMM...

ATT

Alternative
InCDS
Overlapping
sORF

BMDC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
904380	ENSMUST00000162161	Srgn-205	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse

267505

ATG...

MNP...

ATG

Alternative
InCDS
Overlapping
sORF

B_cell, BMDC, Brain,
Glioma, Liver, MEF,
MESC, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
164591	ENSMUST00000020271	Srgn-201	protein_coding	Ribo-seq	weak	3	sORFs_org_Mouse
904380	ENSMUST00000162161	Srgn-205	protein_coding	Ribo-seq	weak	1	Johnstone2016
3355	ENSMUST00000160987	Srgn-204	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse

926340

177

AGG...

RFP...

AGG

Alternative
InCDS
Overlapping
sORF

BMDC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
904380	ENSMUST00000162161	Srgn-205	protein_coding	Ribo-seq		1	sORFs_org_Mouse

1060757

201

GTG...

VEP...

GTG

Alternative
Overlapping
sORF
Upstream

Neutrophil

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
904380	ENSMUST00000162161	Srgn-205	protein_coding	Ribo-seq		1	sORFs_org_Mouse

914561

111

AAG...

KDP...

AAG

Alternative
InCDS
Overlapping
sORF

BMDC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
904380	ENSMUST00000162161	Srgn-205	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse

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