Gene NCBI:19070 | MetamORF

Gene

ID CARD

NCBI:19070

Aliases

2610109B12Rik
ENSMUSG00000025979, MGI:104899, Mob4
Mobkl3, NCBI:19070, OFF:Mob4
Phocn, Prei3

Chromosome

Transcripts

41 ORFs
7 known transcripts
108 ORF to known transcript associations

MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

ORFs

Display all the transcripts related to the entry.

9156

ENSMUST00000161122

Mob4-204

nonsense_mediated_decay

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
344605	48	ATG ...	MNH ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3, Brain
1596234	30	ATG ...	MKE ...	Ribo-seq	ATG	moderate	1	Johnstone2016	Alternative Downstream NMD sORF	Glioma, Liver, MEF, MESC
327622	51	TTG ...	LNH ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3
307549	39	TTG ...	LMK ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain
408856	54	CTG ...	LDG ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Downstream NMD sORF	3T3, Brain
404226	63	TTG ...	LTK ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain
9155	96	GTG ...	VMK ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	Downstream NMD sORF	3T3, Skin_tumor
102405	51	CTG ...	LMN ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3, Brain
266309	51	CTG ...	LNN ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	Brain
10272	81	CTG ...	LMS ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Downstream NMD sORF	Brain, Skin_tumor
103061	42	CTG ...	LKA ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3, Brain
293397	33	GTG ...	VNA ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	Brain
308329	45	ATG ...	MPI ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative Downstream NMD sORF	3T3, Brain
305336	30	GTG ...	VQL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	Brain
409296	33	CTG ...	LNS ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Downstream NMD sORF	3T3, Brain, R1E
525323	39	ATG ...	MKH ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	3T3
388640	36	ATG ...	MSS ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse Johnstone2016	Alternative Downstream NMD sORF	Brain, Glioma, Liver, MEF, MESC
500671	81	ATG ...	MPI ...	Ribo-seq	ATG		1	Johnstone2016	Alternative Downstream NMD sORF	Glioma, Liver, MEF, MESC
113168	60	GTG ...	VSC ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative Downstream NMD sORF	3T3, Brain
378692	30	ATG ...	MKV ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3, Brain
319856	39	ATG ...	MPS ...	Ribo-seq	ATG	weak	3	sORFs_org_Mouse Johnstone2016	Downstream NMD sORF	3T3, Brain, Glioma, Liver, MEF, MESC
281888	63	CTG ...	LIV ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Downstream NMD sORF	3T3, Brain

449136

ENSMUST00000162930

Mob4-207

retained_intron

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
305336	30	GTG ...	VQL ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Intronic sORF	3T3, Liver, Spleen_B_cell
102405	51	CTG ...	LMN ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	MEF, Spleen_B_cell
121633	36	ATG ...	MKW ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Intronic sORF	3T3, Spleen_B_cell
113168	60	GTG ...	VSC ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	MEF, Spleen_B_cell
10272	81	CTG ...	LMS ...	Ribo-seq	CTG	moderate	5	sORFs_org_Mouse	Intronic sORF	3T3, Liver, MEF, Spleen_B_cell, v6-5
307549	39	TTG ...	LMK ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Intronic sORF	3T3, Spleen_B_cell
408856	54	CTG ...	LDG ...	Ribo-seq	CTG	strong	2	sORFs_org_Mouse	Intronic sORF	Liver, Spleen_B_cell
103061	42	CTG ...	LKA ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Intronic sORF	MEF, Spleen_B_cell
319856	39	ATG ...	MPS ...	Ribo-seq	ATG	weak	3	sORFs_org_Mouse	Intronic sORF	Liver, MEF, Spleen_B_cell
508866	39	CTG ...	LAL ...	Ribo-seq	CTG	strong	3	sORFs_org_Mouse	Intronic sORF	3T3, Spleen_B_cell, v6-5
281888	63	CTG ...	LIV ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	Intronic sORF	Liver, MEF, Spleen_B_cell, v6-5
9155	96	GTG ...	VMK ...	Ribo-seq	GTG	weak	5	sORFs_org_Mouse	Intronic sORF	B_cell, Liver, MEF, Spleen_B_cell, v6-5
293397	33	GTG ...	VNA ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Intronic sORF	3T3, Spleen_B_cell
404226	63	TTG ...	LTK ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Intronic sORF	3T3, MEF
378692	30	ATG ...	MKV ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Intronic sORF	MEF
327622	51	TTG ...	LNH ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Intronic sORF	MEF
715465	33	CTG ...	LGK ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Intronic sORF	3T3, v6-5
388640	36	ATG ...	MSS ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	Intronic sORF	Liver, MEF
409296	33	CTG ...	LNS ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Intronic sORF	Liver, Spleen_B_cell
525323	39	ATG ...	MKH ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Intronic sORF	Spleen_B_cell
266309	51	CTG ...	LNN ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	3T3
344605	48	ATG ...	MNH ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Intronic sORF	MEF, Spleen_B_cell

131247

ENSMUST00000159311

Mob4-202

protein_coding

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
500671	81	ATG ...	MPI ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
508866	39	CTG ...	LAL ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	MEF
1289992	51	AAG ...	KFR ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	E14
715465	33	CTG ...	LGK ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	MEF, NSC
388640	36	ATG ...	MSS ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
378692	30	ATG ...	MKV ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
131246	60	CTG ...	LNN ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
152314	39	GTG ...	VQL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
308329	45	ATG ...	MPI ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1596234	30	ATG ...	MKE ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	MEF

115847

ENSMUST00000027122

Mob4-201

protein_coding

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
305336	30	GTG ...	VQL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	sORF	Brain
113168	60	GTG ...	VSC ...	Ribo-seq	GTG		1	sORFs_org_Mouse	sORF	R1E
131246	60	CTG ...	LNN ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF	3T3
500671	81	ATG ...	MPI ...	Ribo-seq	ATG		1	sORFs_org_Mouse	sORF	3T3
388640	36	ATG ...	MSS ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	sORF	BMDC
115846	81	CTG ...	LMN ...	Ribo-seq	CTG		2	sORFs_org_Mouse	sORF	3T3, Brain
319856	39	ATG ...	MPS ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	sORF	Brain
751723	66	ATG ...	MKW ...	Ribo-seq	ATG		1	sORFs_org_Mouse	sORF	3T3
149457	78	ATG ...	MNH ...	Ribo-seq	ATG		2	sORFs_org_Mouse	sORF	3T3, Brain
308329	45	ATG ...	MPI ...	Ribo-seq	ATG		2	sORFs_org_Mouse	sORF	Brain, R1E
150075	69	TTG ...	LMK ...	Ribo-seq	TTG		2	sORFs_org_Mouse	sORF	3T3, Brain
344605	48	ATG ...	MNH ...	Ribo-seq	ATG		1	sORFs_org_Mouse	sORF	Brain
102405	51	CTG ...	LMN ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF	Brain
266309	51	CTG ...	LNN ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF	Brain
152314	39	GTG ...	VQL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	sORF	3T3

808596

ENSMUST00000162553

Mob4-206

protein_coding

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
307549	39	TTG ...	LMK ...	Ribo-seq	TTG		5	sORFs_org_Mouse	sORF	E14, MEF, NSC, v6-5
293397	33	GTG ...	VNA ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	sORF	E14
344605	48	ATG ...	MNH ...	Ribo-seq	ATG		5	sORFs_org_Mouse	sORF	E14, MEF, NSC, v6-5
327622	51	TTG ...	LNH ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	sORF	MEF
1160327	63	ATG ...	MNH ...	Ribo-seq	ATG		4	sORFs_org_Mouse	sORF	E14, NSC, v6-5
102405	51	CTG ...	LMN ...	Ribo-seq	CTG		6	sORFs_org_Mouse	sORF	E14, MEF, NSC, v6-5
1214641	75	ATA ...	IIG ...	Ribo-seq	ATA		1	sORFs_org_Mouse	sORF	E14
1372413	54	TTG ...	LMK ...	Ribo-seq	TTG		2	sORFs_org_Mouse	sORF	E14, NSC
500671	81	ATG ...	MPI ...	Ribo-seq	ATG		1	sORFs_org_Mouse	sORF	E14
1165749	66	CTG ...	LMN ...	Ribo-seq	CTG		3	sORFs_org_Mouse	sORF	E14, NSC, v6-5
266309	51	CTG ...	LNN ...	Ribo-seq	CTG		4	sORFs_org_Mouse	sORF	E14, MEF, NSC, v6-5
308329	45	ATG ...	MPI ...	Ribo-seq	ATG		4	sORFs_org_Mouse	sORF	E14, MEF, NSC, v6-5
378692	30	ATG ...	MKV ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	sORF	MEF
121633	36	ATG ...	MKW ...	Ribo-seq	ATG		4	sORFs_org_Mouse	sORF	E14, MEF, NSC
388640	36	ATG ...	MSS ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	sORF	MEF, NSC
103061	42	CTG ...	LKA ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	sORF	MEF
808595	51	ATG ...	MKW ...	Ribo-seq	ATG		3	sORFs_org_Mouse	sORF	B_cell, E14, NSC
404226	63	TTG ...	LTK ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	sORF	MEF
305336	30	GTG ...	VQL ...	Ribo-seq	GTG		2	sORFs_org_Mouse	sORF	E14, NSC
113168	60	GTG ...	VSC ...	Ribo-seq	GTG		4	sORFs_org_Mouse	sORF	MEF, NSC, v6-5
319856	39	ATG ...	MPS ...	Ribo-seq	ATG	weak	4	sORFs_org_Mouse	sORF	E14, MEF, v6-5

121634

ENSMUST00000159743

Mob4-203

retained_intron

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
378692	30	ATG ...	MKV ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Intronic sORF	B_cell
327622	51	TTG ...	LNH ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	Intronic sORF	B_cell, Brain
121633	36	ATG ...	MKW ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Intronic sORF	B_cell, Brain
404226	63	TTG ...	LTK ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Intronic sORF	B_cell
344605	48	ATG ...	MNH ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Intronic sORF	B_cell
102405	51	CTG ...	LMN ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	B_cell
307549	39	TTG ...	LMK ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	B_cell
103061	42	CTG ...	LKA ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	B_cell

493696

ENSMUST00000162364

Mob4-205

protein_coding

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
152314	39	GTG ...	VQL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Spleen_B_cell
319856	39	ATG ...	MPS ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell
502215	63	ATG ...	MNH ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Spleen_B_cell
499567	51	ATG ...	MKW ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Spleen_B_cell
500671	81	ATG ...	MPI ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Spleen_B_cell
293397	33	GTG ...	VNA ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell
508866	39	CTG ...	LAL ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	B_cell
497963	54	TTG ...	LMK ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Spleen_B_cell
131246	60	CTG ...	LNN ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell
493695	66	CTG ...	LMN ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Spleen_B_cell

ORFs

41 ORFs
7 known transcripts
108 ORF to known transcript associations

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF Length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Start codon

The start codon sequence of the ORF.

ORF annotations

A comma-separated list of all the annotations computed by our algorithm for the ORF. This list includes the annotations computed for the ORF for all transcripts. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of all the cell types in which the ORF has already been identified.

Transcripts

Display all the transcripts related to the entry.

344605

ATG...

MNH...

ATG

Alternative
InCDS
NMD
Overlapping
sORF
Intronic

3T3, Brain, E14,
MEF, NSC, v6-5,
B_cell, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
9156	ENSMUST00000161122	Mob4-204	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse
808596	ENSMUST00000162553	Mob4-206	protein_coding	Ribo-seq		5	sORFs_org_Mouse
121634	ENSMUST00000159743	Mob4-203	retained_intron	Ribo-seq		1	sORFs_org_Mouse
115847	ENSMUST00000027122	Mob4-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse
449136	ENSMUST00000162930	Mob4-207	retained_intron	Ribo-seq		2	sORFs_org_Mouse

305336

GTG...

VQL...

GTG

Intronic
sORF
Alternative
Downstream
NMD

3T3, Liver, Spleen_B_cell,
Brain, E14, NSC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
449136	ENSMUST00000162930	Mob4-207	retained_intron	Ribo-seq		3	sORFs_org_Mouse
115847	ENSMUST00000027122	Mob4-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse
9156	ENSMUST00000161122	Mob4-204	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse
808596	ENSMUST00000162553	Mob4-206	protein_coding	Ribo-seq		2	sORFs_org_Mouse

500671

ATG...

MPI...

ATG

Alternative
InCDS
Overlapping
sORF
Downstream
NMD

E14, 3T3, Spleen_B_cell,
Glioma, Liver, MEF,
MESC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
131247	ENSMUST00000159311	Mob4-202	protein_coding	Ribo-seq		1	sORFs_org_Mouse
115847	ENSMUST00000027122	Mob4-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse
808596	ENSMUST00000162553	Mob4-206	protein_coding	Ribo-seq		1	sORFs_org_Mouse
493696	ENSMUST00000162364	Mob4-205	protein_coding	Ribo-seq		1	sORFs_org_Mouse
9156	ENSMUST00000161122	Mob4-204	nonsense_mediated_decay	Ribo-seq		1	Johnstone2016

102405

CTG...

LMN...

CTG

Intronic
sORF
Alternative
InCDS
NMD
Overlapping

MEF, Spleen_B_cell, E14,
NSC, v6-5, 3T3,
Brain, B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
449136	ENSMUST00000162930	Mob4-207	retained_intron	Ribo-seq		2	sORFs_org_Mouse
808596	ENSMUST00000162553	Mob4-206	protein_coding	Ribo-seq		6	sORFs_org_Mouse
9156	ENSMUST00000161122	Mob4-204	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse
121634	ENSMUST00000159743	Mob4-203	retained_intron	Ribo-seq		1	sORFs_org_Mouse
115847	ENSMUST00000027122	Mob4-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse

508866

CTG...

LAL...

CTG

Alternative
Overlapping
sORF
Upstream
Intronic

MEF, 3T3, Spleen_B_cell,
v6-5, B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
131247	ENSMUST00000159311	Mob4-202	protein_coding	Ribo-seq	strong	1	sORFs_org_Mouse
449136	ENSMUST00000162930	Mob4-207	retained_intron	Ribo-seq	strong	3	sORFs_org_Mouse
493696	ENSMUST00000162364	Mob4-205	protein_coding	Ribo-seq	strong	1	sORFs_org_Mouse

121633

ATG...

MKW...

ATG

Intronic
sORF

3T3, Spleen_B_cell, E14,
MEF, NSC, B_cell,
Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
449136	ENSMUST00000162930	Mob4-207	retained_intron	Ribo-seq		2	sORFs_org_Mouse
808596	ENSMUST00000162553	Mob4-206	protein_coding	Ribo-seq		4	sORFs_org_Mouse
121634	ENSMUST00000159743	Mob4-203	retained_intron	Ribo-seq		2	sORFs_org_Mouse

113168

GTG...

VSC...

GTG

Intronic
sORF
Alternative
Downstream
NMD

MEF, Spleen_B_cell, R1E,
3T3, Brain, NSC,
v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
449136	ENSMUST00000162930	Mob4-207	retained_intron	Ribo-seq		2	sORFs_org_Mouse
115847	ENSMUST00000027122	Mob4-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse
9156	ENSMUST00000161122	Mob4-204	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse
808596	ENSMUST00000162553	Mob4-206	protein_coding	Ribo-seq		4	sORFs_org_Mouse

1596234

ATG...

MKE...

ATG

Alternative
Downstream
NMD
sORF
Overlapping

Glioma, Liver, MEF,
MESC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
9156	ENSMUST00000161122	Mob4-204	nonsense_mediated_decay	Ribo-seq	moderate	1	Johnstone2016
131247	ENSMUST00000159311	Mob4-202	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse

10272

CTG...

LMS...

CTG

Intronic
sORF
Downstream
NMD

3T3, Liver, MEF,
Spleen_B_cell, v6-5, Brain,
Skin_tumor

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
449136	ENSMUST00000162930	Mob4-207	retained_intron	Ribo-seq	moderate	5	sORFs_org_Mouse
9156	ENSMUST00000161122	Mob4-204	nonsense_mediated_decay	Ribo-seq	moderate	2	sORFs_org_Mouse

1289992

AAG...

KFR...

AAG

Alternative
Downstream
Overlapping
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
131247	ENSMUST00000159311	Mob4-202	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse

307549

TTG...

LMK...

TTG

Intronic
sORF
Alternative
InCDS
NMD
Overlapping

3T3, Spleen_B_cell, E14,
MEF, NSC, v6-5,
Brain, B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
449136	ENSMUST00000162930	Mob4-207	retained_intron	Ribo-seq		2	sORFs_org_Mouse
808596	ENSMUST00000162553	Mob4-206	protein_coding	Ribo-seq		5	sORFs_org_Mouse
9156	ENSMUST00000161122	Mob4-204	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse
121634	ENSMUST00000159743	Mob4-203	retained_intron	Ribo-seq		1	sORFs_org_Mouse

327622

TTG...

LNH...

TTG

Alternative
InCDS
NMD
Overlapping
sORF
Intronic

3T3, MEF, B_cell,
Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
9156	ENSMUST00000161122	Mob4-204	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse
808596	ENSMUST00000162553	Mob4-206	protein_coding	Ribo-seq	weak	2	sORFs_org_Mouse
121634	ENSMUST00000159743	Mob4-203	retained_intron	Ribo-seq	weak	2	sORFs_org_Mouse
449136	ENSMUST00000162930	Mob4-207	retained_intron	Ribo-seq	weak	1	sORFs_org_Mouse

293397

GTG...

VNA...

GTG

sORF
Alternative
Downstream
NMD
InCDS
Overlapping
Intronic

E14, Brain, B_cell,
3T3, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
808596	ENSMUST00000162553	Mob4-206	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse
9156	ENSMUST00000161122	Mob4-204	nonsense_mediated_decay	Ribo-seq	moderate	1	sORFs_org_Mouse
493696	ENSMUST00000162364	Mob4-205	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse
449136	ENSMUST00000162930	Mob4-207	retained_intron	Ribo-seq	moderate	2	sORFs_org_Mouse

378692

ATG...

MKV...

ATG

Intronic
sORF
Alternative
InCDS
Overlapping
NMD

B_cell, MEF, E14,
3T3, Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
121634	ENSMUST00000159743	Mob4-203	retained_intron	Ribo-seq	moderate	1	sORFs_org_Mouse
808596	ENSMUST00000162553	Mob4-206	protein_coding	Ribo-seq	moderate	2	sORFs_org_Mouse
131247	ENSMUST00000159311	Mob4-202	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse
449136	ENSMUST00000162930	Mob4-207	retained_intron	Ribo-seq	moderate	1	sORFs_org_Mouse
9156	ENSMUST00000161122	Mob4-204	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse

408856

CTG...

LDG...

CTG

Downstream
NMD
sORF
Intronic

3T3, Brain, Liver,
Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
9156	ENSMUST00000161122	Mob4-204	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse
449136	ENSMUST00000162930	Mob4-207	retained_intron	Ribo-seq	strong	2	sORFs_org_Mouse

715465

CTG...

LGK...

CTG

Alternative
Downstream
Overlapping
sORF
Intronic

MEF, NSC, 3T3,
v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
131247	ENSMUST00000159311	Mob4-202	protein_coding	Ribo-seq	moderate	2	sORFs_org_Mouse
449136	ENSMUST00000162930	Mob4-207	retained_intron	Ribo-seq	moderate	2	sORFs_org_Mouse

404226

TTG...

LTK...

TTG

Alternative
InCDS
NMD
Overlapping
sORF
Intronic

Brain, B_cell, 3T3,
MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
9156	ENSMUST00000161122	Mob4-204	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse
121634	ENSMUST00000159743	Mob4-203	retained_intron	Ribo-seq	moderate	1	sORFs_org_Mouse
449136	ENSMUST00000162930	Mob4-207	retained_intron	Ribo-seq	moderate	2	sORFs_org_Mouse
808596	ENSMUST00000162553	Mob4-206	protein_coding	Ribo-seq	moderate	2	sORFs_org_Mouse

152314

GTG...

VQL...

GTG

Alternative
InCDS
Overlapping
sORF

Spleen_B_cell, Brain, 3T3

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
493696	ENSMUST00000162364	Mob4-205	protein_coding	Ribo-seq		1	sORFs_org_Mouse
131247	ENSMUST00000159311	Mob4-202	protein_coding	Ribo-seq		1	sORFs_org_Mouse
115847	ENSMUST00000027122	Mob4-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse

9155

GTG...

VMK...

GTG

Downstream
NMD
sORF
Intronic

3T3, Skin_tumor, B_cell,
Liver, MEF, Spleen_B_cell,
v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
9156	ENSMUST00000161122	Mob4-204	nonsense_mediated_decay	Ribo-seq	weak	2	sORFs_org_Mouse
449136	ENSMUST00000162930	Mob4-207	retained_intron	Ribo-seq	weak	5	sORFs_org_Mouse

131246

CTG...

LNN...

CTG

sORF
Alternative
InCDS
Overlapping

3T3, Brain, B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
115847	ENSMUST00000027122	Mob4-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse
131247	ENSMUST00000159311	Mob4-202	protein_coding	Ribo-seq		1	sORFs_org_Mouse
493696	ENSMUST00000162364	Mob4-205	protein_coding	Ribo-seq		1	sORFs_org_Mouse

388640

ATG...

MSS...

ATG

sORF
Alternative
InCDS
Overlapping
Downstream
NMD
Intronic

BMDC, E14, Brain,
Glioma, Liver, MEF,
MESC, NSC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
115847	ENSMUST00000027122	Mob4-201	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse
131247	ENSMUST00000159311	Mob4-202	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse
9156	ENSMUST00000161122	Mob4-204	nonsense_mediated_decay	Ribo-seq	weak	2	sORFs_org_Mouse Johnstone2016
808596	ENSMUST00000162553	Mob4-206	protein_coding	Ribo-seq	weak	2	sORFs_org_Mouse
449136	ENSMUST00000162930	Mob4-207	retained_intron	Ribo-seq	weak	2	sORFs_org_Mouse

1160327

ATG...

MNH...

ATG

sORF

E14, NSC, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
808596	ENSMUST00000162553	Mob4-206	protein_coding	Ribo-seq		4	sORFs_org_Mouse

115846

CTG...

LMN...

CTG

sORF

3T3, Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
115847	ENSMUST00000027122	Mob4-201	protein_coding	Ribo-seq		2	sORFs_org_Mouse

319856

ATG...

MPS...

ATG

InCDS
Overlapping
sORF
Intronic
Downstream
NMD

B_cell, Liver, MEF,
Spleen_B_cell, Brain, 3T3,
Glioma, MESC, E14,
v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
493696	ENSMUST00000162364	Mob4-205	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse
449136	ENSMUST00000162930	Mob4-207	retained_intron	Ribo-seq	weak	3	sORFs_org_Mouse
115847	ENSMUST00000027122	Mob4-201	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse
9156	ENSMUST00000161122	Mob4-204	nonsense_mediated_decay	Ribo-seq	weak	3	sORFs_org_Mouse Johnstone2016
808596	ENSMUST00000162553	Mob4-206	protein_coding	Ribo-seq	weak	4	sORFs_org_Mouse

502215

ATG...

MNH...

ATG

Alternative
InCDS
Overlapping
sORF

B_cell, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
493696	ENSMUST00000162364	Mob4-205	protein_coding	Ribo-seq		2	sORFs_org_Mouse

103061

CTG...

LKA...

CTG

Intronic
sORF
Alternative
InCDS
NMD
Overlapping

MEF, Spleen_B_cell, 3T3,
Brain, B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
449136	ENSMUST00000162930	Mob4-207	retained_intron	Ribo-seq	weak	2	sORFs_org_Mouse
9156	ENSMUST00000161122	Mob4-204	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse
808596	ENSMUST00000162553	Mob4-206	protein_coding	Ribo-seq	weak	2	sORFs_org_Mouse
121634	ENSMUST00000159743	Mob4-203	retained_intron	Ribo-seq	weak	1	sORFs_org_Mouse

1214641

ATA...

IIG...

ATA

sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
808596	ENSMUST00000162553	Mob4-206	protein_coding	Ribo-seq		1	sORFs_org_Mouse

1372413

TTG...

LMK...

TTG

sORF

E14, NSC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
808596	ENSMUST00000162553	Mob4-206	protein_coding	Ribo-seq		2	sORFs_org_Mouse

266309

CTG...

LNN...

CTG

Alternative
Downstream
NMD
sORF
Intronic

Brain, E14, MEF,
NSC, v6-5, 3T3

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
9156	ENSMUST00000161122	Mob4-204	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse
808596	ENSMUST00000162553	Mob4-206	protein_coding	Ribo-seq		4	sORFs_org_Mouse
449136	ENSMUST00000162930	Mob4-207	retained_intron	Ribo-seq		1	sORFs_org_Mouse
115847	ENSMUST00000027122	Mob4-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse

499567

ATG...

MKW...

ATG

Alternative
InCDS
Overlapping
sORF

Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
493696	ENSMUST00000162364	Mob4-205	protein_coding	Ribo-seq		1	sORFs_org_Mouse

1165749

CTG...

LMN...

CTG

sORF

E14, NSC, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
808596	ENSMUST00000162553	Mob4-206	protein_coding	Ribo-seq		3	sORFs_org_Mouse

308329

ATG...

MPI...

ATG

sORF
Alternative
Downstream
NMD
InCDS
Overlapping

E14, MEF, NSC,
v6-5, 3T3, Brain,
R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
808596	ENSMUST00000162553	Mob4-206	protein_coding	Ribo-seq		4	sORFs_org_Mouse
9156	ENSMUST00000161122	Mob4-204	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse
115847	ENSMUST00000027122	Mob4-201	protein_coding	Ribo-seq		2	sORFs_org_Mouse
131247	ENSMUST00000159311	Mob4-202	protein_coding	Ribo-seq		1	sORFs_org_Mouse

751723

ATG...

MKW...

ATG

sORF

3T3

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
115847	ENSMUST00000027122	Mob4-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse

281888

CTG...

LIV...

CTG

Intronic
sORF
Downstream
NMD

Liver, MEF, Spleen_B_cell,
v6-5, 3T3, Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
449136	ENSMUST00000162930	Mob4-207	retained_intron	Ribo-seq	moderate	4	sORFs_org_Mouse
9156	ENSMUST00000161122	Mob4-204	nonsense_mediated_decay	Ribo-seq	moderate	2	sORFs_org_Mouse

149457

ATG...

MNH...

ATG

sORF

3T3, Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
115847	ENSMUST00000027122	Mob4-201	protein_coding	Ribo-seq		2	sORFs_org_Mouse

409296

CTG...

LNS...

CTG

Downstream
NMD
sORF
Intronic

3T3, Brain, R1E,
Liver, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
9156	ENSMUST00000161122	Mob4-204	nonsense_mediated_decay	Ribo-seq		3	sORFs_org_Mouse
449136	ENSMUST00000162930	Mob4-207	retained_intron	Ribo-seq	weak	2	sORFs_org_Mouse

525323

ATG...

MKH...

ATG

Alternative
Downstream
NMD
sORF
Intronic

3T3, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
9156	ENSMUST00000161122	Mob4-204	nonsense_mediated_decay	Ribo-seq	moderate	1	sORFs_org_Mouse
449136	ENSMUST00000162930	Mob4-207	retained_intron	Ribo-seq	moderate	1	sORFs_org_Mouse

808595

ATG...

MKW...

ATG

sORF

B_cell, E14, NSC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
808596	ENSMUST00000162553	Mob4-206	protein_coding	Ribo-seq		3	sORFs_org_Mouse

150075

TTG...

LMK...

TTG

sORF

3T3, Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
115847	ENSMUST00000027122	Mob4-201	protein_coding	Ribo-seq		2	sORFs_org_Mouse

497963

TTG...

LMK...

TTG

Alternative
InCDS
Overlapping
sORF

B_cell, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
493696	ENSMUST00000162364	Mob4-205	protein_coding	Ribo-seq		2	sORFs_org_Mouse

493695

CTG...

LMN...

CTG

Alternative
InCDS
Overlapping
sORF

B_cell, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
493696	ENSMUST00000162364	Mob4-205	protein_coding	Ribo-seq		2	sORFs_org_Mouse

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