Gene NCBI:18645 | MetamORF

Gene

ID CARD

NCBI:18645

Aliases

ENSMUSG00000027805
MGI:97550, NCBI:18645, OFF:Pfn2
Pfn, Pfn2

Chromosome

Transcripts

28 ORFs
4 known transcripts
55 ORF to known transcript associations

MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

ORFs

Display all the transcripts related to the entry.

51764

ENSMUST00000119344

Pfn2-202

protein_coding

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
51763	81	CTG ...	LHN ...	Ribo-seq	CTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, Testis
54962	39	TTG ...	LLL ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, Testis
138934	102	ATG ...	MGK ...	Ribo-seq	ATG	strong	1	Johnstone2016	Downstream sORF	Glioma, Liver, MEF, MESC
55065	96	GTG ...	VTA ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, Testis
54948	36	CTG ...	LLA ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, Testis
55420	33	TTG ...	LAG ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, Testis
55093	60	GTG ...	VGS ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, Testis
55308	99	ATG ...	MVT ...	Ribo-seq	ATG		3	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	Brain, Glioma, Liver, MEF, MESC, Testis
55492	102	TTG ...	LMV ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, Testis

51902

ENSMUST00000066882

Pfn2-201

protein_coding

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
54879	75	TTG ...	LSA ...	Ribo-seq	TTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, Testis
137600	72	TTG ...	LSA ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain
54962	39	TTG ...	LLL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
55308	99	ATG ...	MVT ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, NSC
51763	81	CTG ...	LHN ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	3T3
138934	102	ATG ...	MGK ...	Ribo-seq	ATG	strong	1	sORFs_org_Mouse	Downstream sORF	Brain
138985	114	TTG ...	LVI ...	Ribo-seq	TTG	strong	1	sORFs_org_Mouse	Downstream sORF	Brain
140901	129	TTG ...	LCT ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Downstream sORF	Brain
1013028	135	CTG ...	LLP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
138333	96	ATG ...	MAA ...	Ribo-seq	ATG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain
55065	96	GTG ...	VTA ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, NSC
53731	63	CTG ...	LPS ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, Brain, Testis
1014505	105	CTG ...	LRR ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
55492	102	TTG ...	LMV ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, NSC
129796	78	ATG ...	MKL ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Alternative Downstream sORF	Brain
1014618	132	CTG ...	LPG ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
141230	99	ATG ...	MAA ...	Ribo-seq	ATG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain
54739	51	CTG ...	LQC ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, Brain, Testis
1014010	144	GTG ...	VRW ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
54780	51	GTG ...	VRR ...	Ribo-seq	GTG	moderate	5	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, Brain, MEF, Testis
55093	60	GTG ...	VGS ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
51901	69	CTG ...	LLL ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, Brain, Testis
54948	36	CTG ...	LLA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3

817766

ENSMUST00000120289

Pfn2-203

protein_coding

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1013028	135	CTG ...	LLP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
138333	96	ATG ...	MAA ...	Ribo-seq	ATG		1	sORFs_org_Mouse	InCDS Overlapping sORF	NSC
54879	75	TTG ...	LSA ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	NSC
141230	99	ATG ...	MAA ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	NSC
54780	51	GTG ...	VRR ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	Overlapping sORF Upstream	Brain, MEF
54739	51	CTG ...	LQC ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	B_cell, Brain, MEF, NSC
53731	63	CTG ...	LPS ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	Brain, NSC
51901	69	CTG ...	LLL ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	Brain, NSC
137600	72	TTG ...	LSA ...	Ribo-seq	TTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	NSC
1551972	87	CTG ...	LGS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
1014010	144	GTG ...	VRW ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
51763	81	CTG ...	LHN ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	NSC, v6-5

130005

ENSMUST00000122210

Pfn2-204

protein_coding

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
51763	81	CTG ...	LHN ...	Ribo-seq	CTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
55065	96	GTG ...	VTA ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
1014327	153	GTG ...	VTA ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
1014066	156	ATG ...	MVT ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
54948	36	CTG ...	LLA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
1013825	159	TTG ...	LMV ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
55420	33	TTG ...	LAG ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
55093	60	GTG ...	VGS ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
55492	102	TTG ...	LMV ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
54962	39	TTG ...	LLL ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
55308	99	ATG ...	MVT ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain

2985115

UNKNOWN_TRANSCRIPT

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
138934	102	ATG ...	MGK ...	Predicted	ATG		1	Samandi2017	sORF
141230	99	ATG ...	MAA ...	Predicted	ATG		1	Samandi2017	sORF
55308	99	ATG ...	MVT ...	Predicted	ATG		1	Samandi2017	sORF

ORFs

28 ORFs
4 known transcripts
55 ORF to known transcript associations

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF Length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Start codon

The start codon sequence of the ORF.

ORF annotations

A comma-separated list of all the annotations computed by our algorithm for the ORF. This list includes the annotations computed for the ORF for all transcripts. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of all the cell types in which the ORF has already been identified.

Transcripts

Display all the transcripts related to the entry.

51763

CTG...

LHN...

CTG

InCDS
Overlapping
sORF
Alternative

Brain, Testis, 3T3,
NSC, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
51764	ENSMUST00000119344	Pfn2-202	protein_coding	Ribo-seq		2	sORFs_org_Mouse
130005	ENSMUST00000122210	Pfn2-204	protein_coding	Ribo-seq		2	sORFs_org_Mouse
51902	ENSMUST00000066882	Pfn2-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse
817766	ENSMUST00000120289	Pfn2-203	protein_coding	Ribo-seq	weak	2	sORFs_org_Mouse

54879

TTG...

LSA...

TTG

Alternative
InCDS
Overlapping
sORF

3T3, Brain, Testis,
NSC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
51902	ENSMUST00000066882	Pfn2-201	protein_coding	Ribo-seq		5	sORFs_org_Mouse
817766	ENSMUST00000120289	Pfn2-203	protein_coding	Ribo-seq		1	sORFs_org_Mouse

54962

TTG...

LLL...

TTG

Alternative
InCDS
Overlapping
sORF

Brain, Testis, 3T3

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
51764	ENSMUST00000119344	Pfn2-202	protein_coding	Ribo-seq		2	sORFs_org_Mouse
51902	ENSMUST00000066882	Pfn2-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse
130005	ENSMUST00000122210	Pfn2-204	protein_coding	Ribo-seq		2	sORFs_org_Mouse

1013028

135

CTG...

LLP...

CTG

Alternative
InCDS
Overlapping
sORF

Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
817766	ENSMUST00000120289	Pfn2-203	protein_coding	Ribo-seq		1	sORFs_org_Mouse
51902	ENSMUST00000066882	Pfn2-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse

137600

TTG...

LSA...

TTG

Alternative
InCDS
Overlapping
sORF

3T3, Brain, NSC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
51902	ENSMUST00000066882	Pfn2-201	protein_coding	Ribo-seq		4	sORFs_org_Mouse
817766	ENSMUST00000120289	Pfn2-203	protein_coding	Ribo-seq		1	sORFs_org_Mouse

138333

ATG...

MAA...

ATG

InCDS
Overlapping
sORF
Alternative

NSC, 3T3, Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
817766	ENSMUST00000120289	Pfn2-203	protein_coding	Ribo-seq		1	sORFs_org_Mouse
51902	ENSMUST00000066882	Pfn2-201	protein_coding	Ribo-seq		4	sORFs_org_Mouse

55308

ATG...

MVT...

ATG

Alternative
InCDS
Overlapping
sORF

3T3, Brain, NSC,
Glioma, Liver,
MEF, MESC, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
51902	ENSMUST00000066882	Pfn2-201	protein_coding	Ribo-seq		3	sORFs_org_Mouse
2985115	UNKNOWN_TRANSCRIPT			Predicted		1	Samandi2017
51764	ENSMUST00000119344	Pfn2-202	protein_coding	Ribo-seq		3	sORFs_org_Mouse Johnstone2016
130005	ENSMUST00000122210	Pfn2-204	protein_coding	Ribo-seq		1	sORFs_org_Mouse

141230

ATG...

MAA...

ATG

Alternative
InCDS
Overlapping
sORF

NSC, 3T3,
Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
817766	ENSMUST00000120289	Pfn2-203	protein_coding	Ribo-seq		1	sORFs_org_Mouse
2985115	UNKNOWN_TRANSCRIPT			Predicted		1	Samandi2017
51902	ENSMUST00000066882	Pfn2-201	protein_coding	Ribo-seq		4	sORFs_org_Mouse

138934

102

ATG...

MGK...

ATG

sORF
Downstream

Glioma, Liver,
MEF, MESC, Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
2985115	UNKNOWN_TRANSCRIPT			Predicted		1	Samandi2017
51764	ENSMUST00000119344	Pfn2-202	protein_coding	Ribo-seq	strong	1	Johnstone2016
51902	ENSMUST00000066882	Pfn2-201	protein_coding	Ribo-seq	strong	1	sORFs_org_Mouse

54780

GTG...

VRR...

GTG

Overlapping
sORF
Upstream
Alternative

Brain, MEF, 3T3,
Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
817766	ENSMUST00000120289	Pfn2-203	protein_coding	Ribo-seq	moderate	3	sORFs_org_Mouse
51902	ENSMUST00000066882	Pfn2-201	protein_coding	Ribo-seq	moderate	5	sORFs_org_Mouse

55065

GTG...

VTA...

GTG

Alternative
InCDS
Overlapping
sORF

Brain, Testis, 3T3,
NSC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
130005	ENSMUST00000122210	Pfn2-204	protein_coding	Ribo-seq		2	sORFs_org_Mouse
51764	ENSMUST00000119344	Pfn2-202	protein_coding	Ribo-seq		2	sORFs_org_Mouse
51902	ENSMUST00000066882	Pfn2-201	protein_coding	Ribo-seq		2	sORFs_org_Mouse

1014327

153

GTG...

VTA...

GTG

Alternative
InCDS
Overlapping
sORF

Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
130005	ENSMUST00000122210	Pfn2-204	protein_coding	Ribo-seq		1	sORFs_org_Mouse

138985

114

TTG...

LVI...

TTG

Downstream
sORF

Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
51902	ENSMUST00000066882	Pfn2-201	protein_coding	Ribo-seq	strong	1	sORFs_org_Mouse

140901

129

TTG...

LCT...

TTG

Downstream
sORF

Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
51902	ENSMUST00000066882	Pfn2-201	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse

1014066

156

ATG...

MVT...

ATG

Alternative
InCDS
Overlapping
sORF

Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
130005	ENSMUST00000122210	Pfn2-204	protein_coding	Ribo-seq		1	sORFs_org_Mouse

54739

CTG...

LQC...

CTG

Alternative
Overlapping
sORF
Upstream

B_cell, Brain, MEF,
NSC, 3T3, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
817766	ENSMUST00000120289	Pfn2-203	protein_coding	Ribo-seq	weak	4	sORFs_org_Mouse
51902	ENSMUST00000066882	Pfn2-201	protein_coding	Ribo-seq	weak	4	sORFs_org_Mouse

54948

CTG...

LLA...

CTG

Alternative
InCDS
Overlapping
sORF

Brain, Testis, 3T3

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
130005	ENSMUST00000122210	Pfn2-204	protein_coding	Ribo-seq		1	sORFs_org_Mouse
51764	ENSMUST00000119344	Pfn2-202	protein_coding	Ribo-seq		2	sORFs_org_Mouse
51902	ENSMUST00000066882	Pfn2-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse

53731

CTG...

LPS...

CTG

Alternative
Overlapping
sORF
Upstream

Brain, NSC, 3T3,
Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
817766	ENSMUST00000120289	Pfn2-203	protein_coding	Ribo-seq	weak	2	sORFs_org_Mouse
51902	ENSMUST00000066882	Pfn2-201	protein_coding	Ribo-seq	weak	4	sORFs_org_Mouse

1013825

159

TTG...

LMV...

TTG

Alternative
InCDS
Overlapping
sORF

Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
130005	ENSMUST00000122210	Pfn2-204	protein_coding	Ribo-seq		1	sORFs_org_Mouse

55420

TTG...

LAG...

TTG

Alternative
InCDS
Overlapping
sORF

Brain, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
130005	ENSMUST00000122210	Pfn2-204	protein_coding	Ribo-seq		2	sORFs_org_Mouse
51764	ENSMUST00000119344	Pfn2-202	protein_coding	Ribo-seq		2	sORFs_org_Mouse

55093

GTG...

VGS...

GTG

Alternative
InCDS
Overlapping
sORF

Brain, Testis, 3T3

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
130005	ENSMUST00000122210	Pfn2-204	protein_coding	Ribo-seq		2	sORFs_org_Mouse
51764	ENSMUST00000119344	Pfn2-202	protein_coding	Ribo-seq		2	sORFs_org_Mouse
51902	ENSMUST00000066882	Pfn2-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse

1014505

105

CTG...

LRR...

CTG

Alternative
InCDS
Overlapping
sORF

Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
51902	ENSMUST00000066882	Pfn2-201	protein_coding	Ribo-seq		2	sORFs_org_Mouse

51901

CTG...

LLL...

CTG

Alternative
Overlapping
sORF
Upstream

Brain, NSC, 3T3,
Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
817766	ENSMUST00000120289	Pfn2-203	protein_coding	Ribo-seq	weak	2	sORFs_org_Mouse
51902	ENSMUST00000066882	Pfn2-201	protein_coding	Ribo-seq	weak	4	sORFs_org_Mouse

55492

102

TTG...

LMV...

TTG

Alternative
InCDS
Overlapping
sORF

3T3, Brain, NSC,
Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
51902	ENSMUST00000066882	Pfn2-201	protein_coding	Ribo-seq		3	sORFs_org_Mouse
130005	ENSMUST00000122210	Pfn2-204	protein_coding	Ribo-seq		1	sORFs_org_Mouse
51764	ENSMUST00000119344	Pfn2-202	protein_coding	Ribo-seq		2	sORFs_org_Mouse

129796

ATG...

MKL...

ATG

Alternative
Downstream
sORF

Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
51902	ENSMUST00000066882	Pfn2-201	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse

1551972

CTG...

LGS...

CTG

Alternative
InCDS
Overlapping
sORF

Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
817766	ENSMUST00000120289	Pfn2-203	protein_coding	Ribo-seq		1	sORFs_org_Mouse

1014618

132

CTG...

LPG...

CTG

Alternative
InCDS
Overlapping
sORF

Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
51902	ENSMUST00000066882	Pfn2-201	protein_coding	Ribo-seq		2	sORFs_org_Mouse

1014010

144

GTG...

VRW...

GTG

Alternative
InCDS
Overlapping
sORF

Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
817766	ENSMUST00000120289	Pfn2-203	protein_coding	Ribo-seq		1	sORFs_org_Mouse
51902	ENSMUST00000066882	Pfn2-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse

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