Metam
ORF

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Gene

Gene

ID CARD

ID

NCBI:18432

Aliases

AL024407
AU019902, ENSMUSG00000040463, MGI:106181
Mybbp1a, NCBI:18432, OFF:Mybbp1a
P160, p160MBP, p67MBP

Chromosome

11

Transcripts

165 ORFs
7 known transcripts
254 ORF to known transcript associations

MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

ORFs

Display all the transcripts related to the entry.

9458 ENSMUST00000045633 Mybbp1a-201 protein_coding
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

1602431 153

CTG ...

LMR ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
1293200 75

AGG ...

RPG ...

Ribo-seq
AGG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
314099 63

ATG ...

MVI ...

Ribo-seq
ATG

5 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain, MEF, Neutrophil
777907 180

ATG ...

MTT ...

Ribo-seq
ATG

4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell, MEF
1293771 156

AAG ...

KRR ...

Ribo-seq
AAG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
777864 186

ATG ...

MRM ...

Ribo-seq
ATG

6 sORFs_org_Mouse
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
B_cell, Glioma, Liver,
MEF, MESC, v6-5
1295596 63

AGG ...

RRK ...

Ribo-seq
AGG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
1295378 78

ATA ...

IRG ...

Ribo-seq
ATA

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
654406 177

CTG ...

LSL ...

Ribo-seq
CTG

5 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, E14,
NSC, R1E
660159 129

CTG ...

LDI ...

Ribo-seq
CTG

4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, E14, MEF,
v6-5
777857 162

CTG ...

LMT ...

Ribo-seq
CTG

4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell, MEF
655890 87

TTG ...

LRN ...

Ribo-seq
TTG

5 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, E14,
MEF, R1E
656972 120

ATG ...

MPL ...

Ribo-seq
ATG

8 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, B_cell, BMDC,
E14, MEF, Neutrophil,
v6-5
1039022 141

CTG ...

LSP ...

Ribo-seq
CTG

4 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
MEF, Neutrophil, v6-5
1295218 87

ATC ...

IRP ...

Ribo-seq
ATC

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
776729 171

CTG ...

LRL ...

Ribo-seq
CTG

4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell, E14, NSC,
R1E
1129364 147

ATG ...

MPL ...

Ribo-seq
ATG

2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
MEF, v6-5
1129713 51

GTG ...

VGS ...

Ribo-seq
GTG

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, R1E, v6-5
654094 60

TTG ...

LGR ...

Ribo-seq
TTG

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, E14, v6-5
1603361 39

TTG ...

LTC ...

Ribo-seq
TTG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
1295850 183

ATT ...

IRT ...

Ribo-seq
ATT

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
456050 132

TTG ...

LGW ...

Ribo-seq
TTG

4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, MEF, NSC,
Spleen_B_cell
654179 111

ATG ...

MCL ...

Ribo-seq
ATG

6 sORFs_org_Mouse
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Glioma, Liver,
MEF, MESC, R1E
654594 171

CTG ...

LEE ...

Ribo-seq
CTG

5 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, E14, MEF,
v6-5
653554 150

ATG ...

MPR ...

Ribo-seq
ATG

moderate

1 Johnstone2016
    InCDS
    Overlapping
    sORF
Glioma, Liver, MEF,
MESC
639632 87

ATG ...

MWL ...

Ribo-seq
ATG

weak

1 Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
Glioma, Liver, MEF,
MESC
457006 138

CTG ...

LGL ...

Ribo-seq
CTG

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, NSC, Spleen_B_cell
455324 66

ATG ...

MRR ...

Ribo-seq
ATG

2 sORFs_org_Mouse
Johnstone2016
    InCDS
    Overlapping
    sORF
Glioma, Liver, MEF,
MESC, Spleen_B_cell
9457 51

CTG ...

LGP ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, Skin_tumor
1844583 42

TTG ...

LSV ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
R1E
1597463 63

ATG ...

MLK ...

Ribo-seq
ATG

weak

1 Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
Glioma, Liver, MEF,
MESC
1295228 66

AAG ...

KMV ...

Ribo-seq
AAG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
1602066 159

ATG ...

MTL ...

Ribo-seq
ATG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
8676 54

ATG ...

MPD ...

Ribo-seq
ATG

moderate

1 Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
Glioma, Liver, MEF,
MESC
656424 84

CTG ...

LGH ...

Ribo-seq
CTG

6 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, E14, MEF,
NSC, R1E, v6-5
642740 51

ATG ...

MGS ...

Ribo-seq
ATG

strong

1 Johnstone2016
    InCDS
    Overlapping
    sORF
Glioma, Liver, MEF,
MESC
1603151 150

ATG ...

MRS ...

Ribo-seq
ATG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
659155 135

ATG ...

MPS ...

Ribo-seq
ATG

4 sORFs_org_Mouse
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Glioma, Liver,
MEF, MESC, R1E,
v6-5
931982 141

ATA ...

IFL ...

Ribo-seq
ATA

moderate

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC
1294563 72

AGG ...

RKR ...

Ribo-seq
AGG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
1604026 132

ATG ...

MER ...

Ribo-seq
ATG

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
1294420 126

ATT ...

ISM ...

Ribo-seq
ATT

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
17286 ENSMUST00000152894 Mybbp1a-205 retained_intron
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

1601666 36

CTG ...

LPT ...

Ribo-seq
CTG

moderate

2 sORFs_org_Mouse
    Intronic
    sORF
MEF
1080426 51

TTG ...

LEE ...

Ribo-seq
TTG

2 sORFs_org_Mouse
    Intronic
    sORF
MEF
91209 117

GTG ...

VAL ...

Ribo-seq
GTG

5 sORFs_org_Mouse
    Intronic
    sORF
3T3, MEF, Testis
91581 147

GTG ...

VLV ...

Ribo-seq
GTG

5 sORFs_org_Mouse
    Intronic
    sORF
3T3, E14, MEF,
R1E, Testis
21596 93

CTG ...

LLN ...

Ribo-seq
CTG

3 sORFs_org_Mouse
    Intronic
    sORF
E14, R1E, Testis
1079718 69

CTG ...

LFW ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    Intronic
    sORF
MEF
1696692 141

CTG ...

LLF ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Intronic
    sORF
MEF
21874 123

TTG ...

LFH ...

Ribo-seq
TTG

6 sORFs_org_Mouse
    Intronic
    sORF
3T3, E14, MEF,
R1E, Testis, v6-5
18097 114

TTG ...

LMR ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    Intronic
    sORF
Testis
649478 102

ATG ...

MPL ...

Ribo-seq
ATG

2 sORFs_org_Mouse
    Intronic
    sORF
3T3, v6-5
1126517 132

CTG ...

LMP ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Intronic
    sORF
v6-5
1756924 138

CTG ...

LRS ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Intronic
    sORF
MEF
17677 159

GTG ...

VMV ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    Intronic
    sORF
Testis
642740 51

ATG ...

MGS ...

Ribo-seq
ATG

strong

3 sORFs_org_Mouse
    Intronic
    sORF
3T3, R1E, v6-5
18102 156

CTG ...

LIE ...

Ribo-seq
CTG

5 sORFs_org_Mouse
    Intronic
    sORF
3T3, E14, MEF,
R1E, Testis
1340988 30

TTG ...

LGR ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    Intronic
    sORF
E14
90873 165

CTG ...

LKV ...

Ribo-seq
CTG

9 sORFs_org_Mouse
    Intronic
    sORF
3T3, E14, MEF,
NSC, R1E, Testis,
v6-5
19018 228

CTG ...

LSQ ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    Intronic
    sORF
Testis
91711 159

GTG ...

VAA ...

Ribo-seq
GTG

9 sORFs_org_Mouse
    Intronic
    sORF
3T3, E14, MEF,
NSC, R1E, Testis,
v6-5
1127532 51

GTG ...

VYL ...

Ribo-seq
GTG

moderate

2 sORFs_org_Mouse
    Intronic
    sORF
E14, v6-5
20036 105

CTG ...

LLR ...

Ribo-seq
CTG

3 sORFs_org_Mouse
    Intronic
    sORF
MEF, Testis
1600713 84

GTG ...

VTW ...

Ribo-seq
GTG

moderate

3 sORFs_org_Mouse
    Intronic
    sORF
MEF
91929 96

TTG ...

LRD ...

Ribo-seq
TTG

6 sORFs_org_Mouse
    Intronic
    sORF
E14, MEF, R1E,
Testis
651039 105

CTG ...

LSE ...

Ribo-seq
CTG

weak

6 sORFs_org_Mouse
    Intronic
    sORF
3T3, MEF, NSC,
R1E
21692 153

GTG ...

VKF ...

Ribo-seq
GTG

10 sORFs_org_Mouse
    Intronic
    sORF
3T3, E14, MEF,
NSC, R1E, Testis,
v6-5
91235 36

TTG ...

LTT ...

Ribo-seq
TTG

3 sORFs_org_Mouse
    Intronic
    sORF
MEF, Testis
18817 174

GTG ...

VNI ...

Ribo-seq
GTG

9 sORFs_org_Mouse
    Intronic
    sORF
3T3, E14, MEF,
NSC, R1E, Testis,
v6-5
652025 132

GTG ...

VTP ...

Ribo-seq
GTG

weak

2 sORFs_org_Mouse
    Intronic
    sORF
3T3, v6-5
1127228 51

TTG ...

LWI ...

Ribo-seq
TTG

moderate

5 sORFs_org_Mouse
    Intronic
    sORF
MEF, R1E, v6-5
653554 150

ATG ...

MPR ...

Ribo-seq
ATG

moderate

4 sORFs_org_Mouse
    Intronic
    sORF
3T3, E14, MEF,
v6-5
1596132 120

CTG ...

LWI ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    Intronic
    sORF
MEF
18377 126

CTG ...

LPN ...

Ribo-seq
CTG

6 sORFs_org_Mouse
    Intronic
    sORF
3T3, MEF, Testis,
v6-5
1597463 63

ATG ...

MLK ...

Ribo-seq
ATG

weak

2 sORFs_org_Mouse
    Intronic
    sORF
MEF
91344 144

CTG ...

LVT ...

Ribo-seq
CTG

5 sORFs_org_Mouse
    Intronic
    sORF
3T3, E14, MEF,
R1E, Testis
17851 90

CTG ...

LNV ...

Ribo-seq
CTG

3 sORFs_org_Mouse
    Intronic
    sORF
E14, R1E, Testis
21792 69

CTG ...

LNS ...

Ribo-seq
CTG

9 sORFs_org_Mouse
    Intronic
    sORF
3T3, E14, MEF,
R1E, Testis, v6-5
652051 117

CTG ...

LLP ...

Ribo-seq
CTG

5 sORFs_org_Mouse
    Intronic
    sORF
3T3, MEF, R1E
91179 75

CTG ...

LLN ...

Ribo-seq
CTG

10 sORFs_org_Mouse
    Intronic
    sORF
3T3, E14, MEF,
NSC, R1E, Testis,
v6-5
639632 87

ATG ...

MWL ...

Ribo-seq
ATG

weak

4 sORFs_org_Mouse
    Intronic
    sORF
3T3, MEF
17308 129

CTG ...

LAE ...

Ribo-seq
CTG

10 sORFs_org_Mouse
    Intronic
    sORF
3T3, E14, MEF,
NSC, R1E, Testis,
v6-5
19951 60

TTG ...

LVD ...

Ribo-seq
TTG

6 sORFs_org_Mouse
    Intronic
    sORF
E14, MEF, Testis,
v6-5
18249 177

CTG ...

LVN ...

Ribo-seq
CTG

9 sORFs_org_Mouse
    Intronic
    sORF
3T3, E14, MEF,
NSC, R1E, Testis,
v6-5
21953 123

CTG ...

LLE ...

Ribo-seq
CTG

8 sORFs_org_Mouse
    Intronic
    sORF
3T3, E14, MEF,
NSC, R1E, v6-5
91363 249

CTG ...

LQK ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    Intronic
    sORF
Testis
18671 81

CTG ...

LQP ...

Ribo-seq
CTG

9 sORFs_org_Mouse
    Intronic
    sORF
3T3, E14, MEF,
R1E, Testis, v6-5
91491 141

CTG ...

LSL ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Intronic
    sORF
Testis
19556 105

GTG ...

VAW ...

Ribo-seq
GTG

8 sORFs_org_Mouse
    Intronic
    sORF
3T3, E14, MEF,
R1E, Testis, v6-5
90839 168

CTG ...

LQT ...

Ribo-seq
CTG

10 sORFs_org_Mouse
    Intronic
    sORF
3T3, E14, MEF,
NSC, R1E, Testis,
v6-5
18855 99

TTG ...

LDF ...

Ribo-seq
TTG

8 sORFs_org_Mouse
    Intronic
    sORF
3T3, E14, MEF,
NSC, R1E, v6-5
770492 45

ATG ...

MVI ...

Ribo-seq
ATG

2 sORFs_org_Mouse
    Intronic
    sORF
MEF
19594 117

CTG ...

LIL ...

Ribo-seq
CTG

4 sORFs_org_Mouse
    Intronic
    sORF
E14, MEF, R1E,
Testis
1703151 48

TTG ...

LTS ...

Ribo-seq
TTG

weak

1 sORFs_org_Mouse
    Intronic
    sORF
MEF
643183 66

TTG ...

LKT ...

Ribo-seq
TTG

weak

3 sORFs_org_Mouse
    Intronic
    sORF
3T3, MEF, R1E
446701 96

CTG ...

LVL ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Intronic
    sORF
NSC
21472 198

CTG ...

LPK ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Intronic
    sORF
Testis
1339839 45

TTG ...

LVI ...

Ribo-seq
TTG

moderate

1 sORFs_org_Mouse
    Intronic
    sORF
E14
21827 111

CTG ...

LEL ...

Ribo-seq
CTG

3 sORFs_org_Mouse
    Intronic
    sORF
E14, R1E, Testis
1701547 72

GTG ...

VRM ...

Ribo-seq
GTG

moderate

1 sORFs_org_Mouse
    Intronic
    sORF
MEF
19861 72

TTG ...

LNH ...

Ribo-seq
TTG

9 sORFs_org_Mouse
    Intronic
    sORF
3T3, E14, MEF,
NSC, R1E, Testis,
v6-5
1600851 60

CTG ...

LKP ...

Ribo-seq
CTG

moderate

2 sORFs_org_Mouse
    Intronic
    sORF
MEF
650340 114

CTG ...

LSR ...

Ribo-seq
CTG

moderate

4 sORFs_org_Mouse
    Intronic
    sORF
3T3, MEF, NSC
19558 144

TTG ...

LLS ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    Intronic
    sORF
Testis
1079886 39

CTG ...

LLK ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Intronic
    sORF
MEF
1695792 54

GTG ...

VKR ...

Ribo-seq
GTG

moderate

1 sORFs_org_Mouse
    Intronic
    sORF
MEF
21700 48

TTG ...

LDD ...

Ribo-seq
TTG

2 sORFs_org_Mouse
    Intronic
    sORF
Testis, v6-5
21510 96

CTG ...

LVQ ...

Ribo-seq
CTG

9 sORFs_org_Mouse
    Intronic
    sORF
3T3, E14, MEF,
NSC, R1E, Testis,
v6-5
17285 258

GTG ...

VGT ...

Ribo-seq
GTG

10 sORFs_org_Mouse
    Intronic
    sORF
3T3, E14, MEF,
NSC, R1E, Testis,
v6-5
454230 111

GTG ...

VLP ...

Ribo-seq
GTG

weak

4 sORFs_org_Mouse
    Intronic
    sORF
3T3, E14, MEF,
NSC
20098 153

GTG ...

VEI ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    Intronic
    sORF
Testis
1078906 117

TTG ...

LQS ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    Intronic
    sORF
NSC
19367 96

CTG ...

LAL ...

Ribo-seq
CTG

4 sORFs_org_Mouse
    Intronic
    sORF
MEF, NSC, Testis
18247 30

CTG ...

LHK ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Intronic
    sORF
Testis
1696826 81

ATG ...

MTT ...

Ribo-seq
ATG

moderate

1 sORFs_org_Mouse
    Intronic
    sORF
MEF
1597319 108

ATG ...

MRT ...

Ribo-seq
ATG

moderate

3 sORFs_org_Mouse
    Intronic
    sORF
MEF
17594 132

CTG ...

LAQ ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Intronic
    sORF
Testis
19329 165

GTG ...

VEV ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    Intronic
    sORF
Testis
652902 57

CTG ...

LKM ...

Ribo-seq
CTG

weak

3 sORFs_org_Mouse
    Intronic
    sORF
3T3, R1E, v6-5
1695603 87

ATG ...

MRM ...

Ribo-seq
ATG

moderate

1 sORFs_org_Mouse
    Intronic
    sORF
MEF
21263 168

GTG ...

VIL ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    Intronic
    sORF
Testis
641691 96

CTG ...

LYS ...

Ribo-seq
CTG

moderate

6 sORFs_org_Mouse
    Intronic
    sORF
3T3, MEF, NSC,
R1E
1601651 63

ATG ...

MRR ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    Intronic
    sORF
MEF
1339667 48

TTG ...

LDL ...

Ribo-seq
TTG

strong

1 sORFs_org_Mouse
    Intronic
    sORF
E14
20351 120

CTG ...

LEH ...

Ribo-seq
CTG

8 sORFs_org_Mouse
    Intronic
    sORF
3T3, E14, MEF,
NSC, R1E, v6-5
19336 102

GTG ...

VVR ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    Intronic
    sORF
Testis
19390 141

GTG ...

VTK ...

Ribo-seq
GTG

5 sORFs_org_Mouse
    Intronic
    sORF
3T3, E14, MEF,
R1E, Testis
22079 201

GTG ...

VAF ...

Ribo-seq
GTG

9 sORFs_org_Mouse
    Intronic
    sORF
3T3, E14, MEF,
NSC, R1E, Testis,
v6-5
19846 135

TTG ...

LLA ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    Intronic
    sORF
Testis
22145 60

CTG ...

LLQ ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    Intronic
    sORF
Testis
91211 201

GTG ...

VSP ...

Ribo-seq
GTG

weak

2 sORFs_org_Mouse
    Intronic
    sORF
Neutrophil, Testis
1596367 57

GTG ...

VDH ...

Ribo-seq
GTG

strong

2 sORFs_org_Mouse
    Intronic
    sORF
MEF
18714 132

TTG ...

LNA ...

Ribo-seq
TTG

8 sORFs_org_Mouse
    Intronic
    sORF
3T3, E14, MEF,
R1E, Testis, v6-5
91314 111

CTG ...

LDL ...

Ribo-seq
CTG

4 sORFs_org_Mouse
    Intronic
    sORF
MEF, Testis
22163 219

GTG ...

VNG ...

Ribo-seq
GTG

weak

1 sORFs_org_Mouse
    Intronic
    sORF
Testis
18453 117

CTG ...

LQS ...

Ribo-seq
CTG

8 sORFs_org_Mouse
    Intronic
    sORF
3T3, E14, MEF,
R1E, Testis, v6-5
19479 213

TTG ...

LTM ...

Ribo-seq
TTG

9 sORFs_org_Mouse
    Intronic
    sORF
3T3, E14, MEF,
R1E, Testis, v6-5
651150 48

GTG ...

VTS ...

Ribo-seq
GTG

weak

3 sORFs_org_Mouse
    Intronic
    sORF
3T3, MEF, R1E
17538 45

GTG ...

VTS ...

Ribo-seq
GTG

4 sORFs_org_Mouse
    Intronic
    sORF
MEF, Testis, v6-5
1124471 123

CTG ...

LSP ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Intronic
    sORF
v6-5
1125586 129

ATG ...

MPL ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    Intronic
    sORF
v6-5
19529 84

GTG ...

VIQ ...

Ribo-seq
GTG

3 sORFs_org_Mouse
    Intronic
    sORF
E14, R1E, Testis
447482 90

TTG ...

LPG ...

Ribo-seq
TTG

2 sORFs_org_Mouse
    Intronic
    sORF
MEF, NSC
21247 87

TTG ...

LAD ...

Ribo-seq
TTG

9 sORFs_org_Mouse
    Intronic
    sORF
3T3, E14, MEF,
NSC, R1E, Testis,
v6-5
1837551 ENSMUST00000134119 Mybbp1a-202 retained_intron
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

1080426 51

TTG ...

LEE ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    Intronic
    sORF
R1E
1079886 39

CTG ...

LLK ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Intronic
    sORF
R1E
1340988 30

TTG ...

LGR ...

Ribo-seq
TTG

strong

1 sORFs_org_Mouse
    Intronic
    sORF
R1E
1840167 36

CTG ...

LKN ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Intronic
    sORF
R1E
18377 126

CTG ...

LPN ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Intronic
    sORF
R1E
20036 105

CTG ...

LLR ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Intronic
    sORF
R1E
91209 117

GTG ...

VAL ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    Intronic
    sORF
R1E
454230 111

GTG ...

VLP ...

Ribo-seq
GTG

weak

1 sORFs_org_Mouse
    Intronic
    sORF
R1E
650340 114

CTG ...

LSR ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Intronic
    sORF
R1E
91314 111

CTG ...

LDL ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Intronic
    sORF
R1E
1843404 165

CTG ...

LGA ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    Intronic
    sORF
R1E
639632 87

ATG ...

MWL ...

Ribo-seq
ATG

weak

1 sORFs_org_Mouse
    Intronic
    sORF
R1E
19367 96

CTG ...

LAL ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Intronic
    sORF
R1E
1079718 69

CTG ...

LFW ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Intronic
    sORF
R1E
1694938 ENSMUST00000144374 Mybbp1a-203 retained_intron
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

1125586 129

ATG ...

MPL ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    Intronic
    sORF
MEF
1124471 123

CTG ...

LSP ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Intronic
    sORF
MEF
1126517 132

CTG ...

LMP ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Intronic
    sORF
MEF
1695273 144

CTG ...

LAA ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Intronic
    sORF
MEF
770492 45

ATG ...

MVI ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    Intronic
    sORF
MEF
649478 102

ATG ...

MPL ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    Intronic
    sORF
MEF
445865 ENSMUST00000162048 Mybbp1a-208 retained_intron
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

17538 45

GTG ...

VTS ...

Ribo-seq
GTG

moderate

2 sORFs_org_Mouse
    Intronic
    sORF
Brain, Neutrophil
19556 105

GTG ...

VAW ...

Ribo-seq
GTG

6 sORFs_org_Mouse
    Intronic
    sORF
B_cell, BMDC, Brain,
Neutrophil, Spleen_B_cell
1291950 108

ATT ...

ISM ...

Ribo-seq
ATT

1 sORFs_org_Mouse
    Intronic
    sORF
E14
20036 105

CTG ...

LLR ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    Intronic
    sORF
Brain, Neutrophil
21874 123

TTG ...

LFH ...

Ribo-seq
TTG

4 sORFs_org_Mouse
    Intronic
    sORF
BMDC, Brain, Neutrophil,
Spleen_B_cell
91314 111

CTG ...

LDL ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Intronic
    sORF
Neutrophil
1291765 72

ACG ...

TKQ ...

Ribo-seq
ACG

1 sORFs_org_Mouse
    Intronic
    sORF
E14
649478 102

ATG ...

MPL ...

Ribo-seq
ATG

3 sORFs_org_Mouse
    Intronic
    sORF
B_cell, BMDC, E14
19594 117

CTG ...

LIL ...

Ribo-seq
CTG

4 sORFs_org_Mouse
    Intronic
    sORF
Brain, E14, Neutrophil,
Spleen_B_cell
1286654 135

AAG ...

KQP ...

Ribo-seq
AAG

1 sORFs_org_Mouse
    Intronic
    sORF
E14
18671 81

CTG ...

LQP ...

Ribo-seq
CTG

3 sORFs_org_Mouse
    Intronic
    sORF
BMDC, Brain, Neutrophil
91929 96

TTG ...

LRD ...

Ribo-seq
TTG

6 sORFs_org_Mouse
    Intronic
    sORF
BMDC, Brain, E14,
Neutrophil, Spleen_B_cell
1290201 99

AAG ...

KKA ...

Ribo-seq
AAG

1 sORFs_org_Mouse
    Intronic
    sORF
E14
1079886 39

CTG ...

LLK ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Intronic
    sORF
Neutrophil
18714 132

TTG ...

LNA ...

Ribo-seq
TTG

5 sORFs_org_Mouse
    Intronic
    sORF
BMDC, Brain, E14,
Neutrophil, Spleen_B_cell
91344 144

CTG ...

LVT ...

Ribo-seq
CTG

3 sORFs_org_Mouse
    Intronic
    sORF
Brain, Neutrophil, Spleen_B_cell
19529 84

GTG ...

VIQ ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    Intronic
    sORF
Neutrophil
21692 153

GTG ...

VKF ...

Ribo-seq
GTG

moderate

5 sORFs_org_Mouse
    Intronic
    sORF
B_cell, BMDC, Brain,
Neutrophil, Spleen_B_cell
18249 177

CTG ...

LVN ...

Ribo-seq
CTG

4 sORFs_org_Mouse
    Intronic
    sORF
B_cell, Brain, Neutrophil,
Spleen_B_cell
18377 126

CTG ...

LPN ...

Ribo-seq
CTG

3 sORFs_org_Mouse
    Intronic
    sORF
B_cell, Brain, Neutrophil
454230 111

GTG ...

VLP ...

Ribo-seq
GTG

weak

1 sORFs_org_Mouse
    Intronic
    sORF
Spleen_B_cell
20351 120

CTG ...

LEH ...

Ribo-seq
CTG

3 sORFs_org_Mouse
    Intronic
    sORF
B_cell, Brain, Neutrophil
445863 57

TTG ...

LGW ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    Intronic
    sORF
Brain
18453 117

CTG ...

LQS ...

Ribo-seq
CTG

5 sORFs_org_Mouse
    Intronic
    sORF
B_cell, BMDC, Brain,
Neutrophil, Spleen_B_cell
90873 165

CTG ...

LKV ...

Ribo-seq
CTG

4 sORFs_org_Mouse
    Intronic
    sORF
B_cell, Brain, Neutrophil,
Spleen_B_cell
91179 75

CTG ...

LLN ...

Ribo-seq
CTG

moderate

4 sORFs_org_Mouse
    Intronic
    sORF
B_cell, BMDC, Brain,
Neutrophil
1078906 117

TTG ...

LQS ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    Intronic
    sORF
Neutrophil
931982 141

ATA ...

IFL ...

Ribo-seq
ATA

moderate

1 sORFs_org_Mouse
    Intronic
    sORF
E14
643183 66

TTG ...

LKT ...

Ribo-seq
TTG

weak

1 sORFs_org_Mouse
    Intronic
    sORF
NSC
642740 51

ATG ...

MGS ...

Ribo-seq
ATG

strong

1 sORFs_org_Mouse
    Intronic
    sORF
B_cell
21953 123

CTG ...

LLE ...

Ribo-seq
CTG

3 sORFs_org_Mouse
    Intronic
    sORF
B_cell, Brain, Neutrophil
21700 48

TTG ...

LDD ...

Ribo-seq
TTG

2 sORFs_org_Mouse
    Intronic
    sORF
Brain, Neutrophil
770492 45

ATG ...

MVI ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    Intronic
    sORF
B_cell
639632 87

ATG ...

MWL ...

Ribo-seq
ATG

weak

1 sORFs_org_Mouse
    Intronic
    sORF
B_cell
450841 63

CTG ...

LGL ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Intronic
    sORF
Brain
652902 57

CTG ...

LKM ...

Ribo-seq
CTG

weak

1 sORFs_org_Mouse
    Intronic
    sORF
B_cell
19479 213

TTG ...

LTM ...

Ribo-seq
TTG

5 sORFs_org_Mouse
    Intronic
    sORF
B_cell, BMDC, Brain,
Neutrophil, Spleen_B_cell
652025 132

GTG ...

VTP ...

Ribo-seq
GTG

weak

2 sORFs_org_Mouse
    Intronic
    sORF
B_cell, E14
21596 93

CTG ...

LLN ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    Intronic
    sORF
Neutrophil, Spleen_B_cell
1078937 120

CTG ...

LLQ ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Intronic
    sORF
Neutrophil
1286478 90

ACG ...

TPQ ...

Ribo-seq
ACG

1 sORFs_org_Mouse
    Intronic
    sORF
E14
91711 159

GTG ...

VAA ...

Ribo-seq
GTG

4 sORFs_org_Mouse
    Intronic
    sORF
B_cell, Brain, Neutrophil,
Spleen_B_cell
21792 69

CTG ...

LNS ...

Ribo-seq
CTG

5 sORFs_org_Mouse
    Intronic
    sORF
B_cell, BMDC, Brain,
E14, Neutrophil
1484036 45

GTG ...

VRL ...

Ribo-seq
GTG

weak

1 sORFs_org_Mouse
    Intronic
    sORF
BMDC
1079718 69

CTG ...

LFW ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Intronic
    sORF
Neutrophil
1287521 162

ACG ...

TLS ...

Ribo-seq
ACG

weak

1 sORFs_org_Mouse
    Intronic
    sORF
E14
1080426 51

TTG ...

LEE ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    Intronic
    sORF
Neutrophil
91581 147

GTG ...

VLV ...

Ribo-seq
GTG

3 sORFs_org_Mouse
    Intronic
    sORF
Brain, Neutrophil, Spleen_B_cell
1482603 39

CTG ...

LSC ...

Ribo-seq
CTG

weak

1 sORFs_org_Mouse
    Intronic
    sORF
BMDC
1340988 30

TTG ...

LGR ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    Intronic
    sORF
Brain
419028 177

ACG ...

TKA ...

Ribo-seq
ACG

1 sORFs_org_Mouse
    Intronic
    sORF
MEF
18817 174

GTG ...

VNI ...

Ribo-seq
GTG

4 sORFs_org_Mouse
    Intronic
    sORF
B_cell, Brain, Neutrophil,
Spleen_B_cell
19951 60

TTG ...

LVD ...

Ribo-seq
TTG

3 sORFs_org_Mouse
    Intronic
    sORF
BMDC, E14, Neutrophil
650340 114

CTG ...

LSR ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    Intronic
    sORF
B_cell
1287093 81

ATC ...

IPE ...

Ribo-seq
ATC

1 sORFs_org_Mouse
    Intronic
    sORF
E14
1285455 141

ACG ...

TRF ...

Ribo-seq
ACG

1 sORFs_org_Mouse
    Intronic
    sORF
E14
19861 72

TTG ...

LNH ...

Ribo-seq
TTG

weak

4 sORFs_org_Mouse
    Intronic
    sORF
B_cell, BMDC, Brain,
Neutrophil
18855 99

TTG ...

LDF ...

Ribo-seq
TTG

3 sORFs_org_Mouse
    Intronic
    sORF
B_cell, Brain, Neutrophil
22079 201

GTG ...

VAF ...

Ribo-seq
GTG

6 sORFs_org_Mouse
    Intronic
    sORF
B_cell, BMDC, Brain,
E14, Neutrophil, Spleen_B_cell
91235 36

TTG ...

LTT ...

Ribo-seq
TTG

weak

2 sORFs_org_Mouse
    Intronic
    sORF
Brain, Neutrophil
653554 150

ATG ...

MPR ...

Ribo-seq
ATG

moderate

2 sORFs_org_Mouse
    Intronic
    sORF
B_cell, E14
19367 96

CTG ...

LAL ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Intronic
    sORF
Neutrophil
90839 168

CTG ...

LQT ...

Ribo-seq
CTG

weak

5 sORFs_org_Mouse
    Intronic
    sORF
B_cell, BMDC, Brain,
Neutrophil, Spleen_B_cell
1290514 60

ATA ...

IRG ...

Ribo-seq
ATA

1 sORFs_org_Mouse
    Intronic
    sORF
E14
18102 156

CTG ...

LIE ...

Ribo-seq
CTG

4 sORFs_org_Mouse
    Intronic
    sORF
Brain, E14, Neutrophil,
Spleen_B_cell
17851 90

CTG ...

LNV ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Intronic
    sORF
Neutrophil
17308 129

CTG ...

LAE ...

Ribo-seq
CTG

strong

5 sORFs_org_Mouse
    Intronic
    sORF
B_cell, BMDC, Brain,
Neutrophil, Spleen_B_cell
17285 258

GTG ...

VGT ...

Ribo-seq
GTG

5 sORFs_org_Mouse
    Intronic
    sORF
B_cell, BMDC, Brain,
Neutrophil, Spleen_B_cell
21510 96

CTG ...

LVQ ...

Ribo-seq
CTG

moderate

5 sORFs_org_Mouse
    Intronic
    sORF
B_cell, BMDC, Brain,
Neutrophil, Spleen_B_cell
91209 117

GTG ...

VAL ...

Ribo-seq
GTG

2 sORFs_org_Mouse
    Intronic
    sORF
Brain, Neutrophil
19390 141

GTG ...

VTK ...

Ribo-seq
GTG

4 sORFs_org_Mouse
    Intronic
    sORF
Brain, E14, Neutrophil,
Spleen_B_cell
21827 111

CTG ...

LEL ...

Ribo-seq
CTG

4 sORFs_org_Mouse
    Intronic
    sORF
Brain, E14, Neutrophil,
Spleen_B_cell
19500 153

CTG ...

LMK ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Intronic
    sORF
Neutrophil
21247 87

TTG ...

LAD ...

Ribo-seq
TTG

moderate

5 sORFs_org_Mouse
    Intronic
    sORF
B_cell, BMDC, Brain,
Neutrophil, Spleen_B_cell
18856 ENSMUST00000156833 Mybbp1a-207 retained_intron
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

19884 36

TTG ...

LLE ...

Ribo-seq
TTG

moderate

1 sORFs_org_Mouse
    Intronic
    sORF
Testis
419028 177

ACG ...

TKA ...

Ribo-seq
ACG

weak

2 sORFs_org_Mouse
    Intronic
    sORF
C2C12, E14
1289757 147

AAG ...

KSV ...

Ribo-seq
AAG

1 sORFs_org_Mouse
    Intronic
    sORF
E14
18855 99

TTG ...

LDF ...

Ribo-seq
TTG

moderate

3 sORFs_org_Mouse
    Intronic
    sORF
E14, Spleen_B_cell, Testis
90833 33

TTG ...

LEY ...

Ribo-seq
TTG

moderate

1 sORFs_org_Mouse
    Intronic
    sORF
Testis
19500 153

CTG ...

LMK ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Intronic
    sORF
Testis
20351 120

CTG ...

LEH ...

Ribo-seq
CTG

moderate

3 sORFs_org_Mouse
    Intronic
    sORF
E14, Spleen_B_cell, Testis
447482 90

TTG ...

LPG ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    Intronic
    sORF
Spleen_B_cell
448467 72

CTG ...

LCP ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Intronic
    sORF
Spleen_B_cell
450841 63

CTG ...

LGL ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Intronic
    sORF
Spleen_B_cell
446701 96

CTG ...

LVL ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Intronic
    sORF
Spleen_B_cell
21953 123

CTG ...

LLE ...

Ribo-seq
CTG

moderate

2 sORFs_org_Mouse
    Intronic
    sORF
Spleen_B_cell, Testis
445863 57

TTG ...

LGW ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    Intronic
    sORF
Spleen_B_cell
1290354 186

AAG ...

KSP ...

Ribo-seq
AAG

moderate

1 sORFs_org_Mouse
    Intronic
    sORF
E14
8677 ENSMUST00000155995 Mybbp1a-206 retained_intron
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

8676 54

ATG ...

MPD ...

Ribo-seq
ATG

moderate

1 sORFs_org_Mouse
    Intronic
    sORF
Skin_tumor
1482527 60

TTG ...

LGR ...

Ribo-seq
TTG

moderate

2 sORFs_org_Mouse
    Intronic
    sORF
BMDC, R1E
3044304 UNKNOWN_TRANSCRIPT
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

777864 186

ATG ...

MRM ...

Predicted
ATG

1 Samandi2017
    sORF
654179 111

ATG ...

MCL ...

Predicted
ATG

1 Samandi2017
    sORF
653554 150

ATG ...

MPR ...

Predicted
ATG

1 Samandi2017
    sORF
659155 135

ATG ...

MPS ...

Predicted
ATG

1 Samandi2017
    sORF

ORFs

165 ORFs
7 known transcripts
254 ORF to known transcript associations

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF Length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Start codon

The start codon sequence of the ORF.

ORF annotations

A comma-separated list of all the annotations computed by our algorithm for the ORF. This list includes the annotations computed for the ORF for all transcripts. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of all the cell types in which the ORF has already been identified.

Transcripts

Display all the transcripts related to the entry.

1602431 153

CTG...

LMR...

CTG Alternative
InCDS
Overlapping
sORF
MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

9458 ENSMUST00000045633 Mybbp1a-201 protein_coding Ribo-seq
2 sORFs_org_Mouse
1601666 36

CTG...

LPT...

CTG Intronic
sORF
MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

17286 ENSMUST00000152894 Mybbp1a-205 retained_intron Ribo-seq
moderate 2 sORFs_org_Mouse
1293200 75

AGG...

RPG...

AGG InCDS
Overlapping
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

9458 ENSMUST00000045633 Mybbp1a-201 protein_coding Ribo-seq
1 sORFs_org_Mouse
314099 63

ATG...

MVI...

ATG InCDS
Overlapping
sORF
Brain, MEF, Neutrophil
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

9458 ENSMUST00000045633 Mybbp1a-201 protein_coding Ribo-seq
5 sORFs_org_Mouse
1080426 51

TTG...

LEE...

TTG Intronic
sORF
MEF, R1E, Neutrophil
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

17286 ENSMUST00000152894 Mybbp1a-205 retained_intron Ribo-seq
2 sORFs_org_Mouse
1837551 ENSMUST00000134119 Mybbp1a-202 retained_intron Ribo-seq
1 sORFs_org_Mouse
445865 ENSMUST00000162048 Mybbp1a-208 retained_intron Ribo-seq
1 sORFs_org_Mouse
777907 180

ATG...

MTT...

ATG Alternative
InCDS
Overlapping
sORF
B_cell, MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

9458 ENSMUST00000045633 Mybbp1a-201 protein_coding Ribo-seq
4 sORFs_org_Mouse
1125586 129

ATG...

MPL...

ATG Intronic
sORF
MEF, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1694938 ENSMUST00000144374 Mybbp1a-203 retained_intron Ribo-seq
1 sORFs_org_Mouse
17286 ENSMUST00000152894 Mybbp1a-205 retained_intron Ribo-seq
1 sORFs_org_Mouse
91209 117

GTG...

VAL...

GTG Intronic
sORF
3T3, MEF, Testis,
R1E, Brain, Neutrophil
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

17286 ENSMUST00000152894 Mybbp1a-205 retained_intron Ribo-seq
5 sORFs_org_Mouse
1837551 ENSMUST00000134119 Mybbp1a-202 retained_intron Ribo-seq
1 sORFs_org_Mouse
445865 ENSMUST00000162048 Mybbp1a-208 retained_intron Ribo-seq
2 sORFs_org_Mouse
91581 147

GTG...

VLV...

GTG Intronic
sORF
3T3, E14, MEF,
R1E, Testis, Brain,
Neutrophil, Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

17286 ENSMUST00000152894 Mybbp1a-205 retained_intron Ribo-seq
5 sORFs_org_Mouse
445865 ENSMUST00000162048 Mybbp1a-208 retained_intron Ribo-seq
3 sORFs_org_Mouse
1293771 156

AAG...

KRR...

AAG Alternative
InCDS
Overlapping
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

9458 ENSMUST00000045633 Mybbp1a-201 protein_coding Ribo-seq
1 sORFs_org_Mouse
21596 93

CTG...

LLN...

CTG Intronic
sORF
E14, R1E, Testis,
Neutrophil, Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

17286 ENSMUST00000152894 Mybbp1a-205 retained_intron Ribo-seq
3 sORFs_org_Mouse
445865 ENSMUST00000162048 Mybbp1a-208 retained_intron Ribo-seq
2 sORFs_org_Mouse
1079718 69

CTG...

LFW...

CTG Intronic
sORF
MEF, Neutrophil, R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

17286 ENSMUST00000152894 Mybbp1a-205 retained_intron Ribo-seq
2 sORFs_org_Mouse
445865 ENSMUST00000162048 Mybbp1a-208 retained_intron Ribo-seq
1 sORFs_org_Mouse
1837551 ENSMUST00000134119 Mybbp1a-202 retained_intron Ribo-seq
1 sORFs_org_Mouse
1696692 141

CTG...

LLF...

CTG Intronic
sORF
MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

17286 ENSMUST00000152894 Mybbp1a-205 retained_intron Ribo-seq
1 sORFs_org_Mouse
777864 186

ATG...

MRM...

ATG Alternative
InCDS
Overlapping
sORF
B_cell, Glioma, Liver,
MEF, MESC, v6-5,
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

9458 ENSMUST00000045633 Mybbp1a-201 protein_coding Ribo-seq
6 sORFs_org_Mouse
Johnstone2016
3044304 UNKNOWN_TRANSCRIPT Predicted
1 Samandi2017
17538 45

GTG...

VTS...

GTG Intronic
sORF
Brain, Neutrophil, MEF,
Testis, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

445865 ENSMUST00000162048 Mybbp1a-208 retained_intron Ribo-seq
moderate 2 sORFs_org_Mouse
17286 ENSMUST00000152894 Mybbp1a-205 retained_intron Ribo-seq
4 sORFs_org_Mouse
19556 105

GTG...

VAW...

GTG Intronic
sORF
B_cell, BMDC, Brain,
Neutrophil, Spleen_B_cell, 3T3,
E14, MEF, R1E,
Testis, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

445865 ENSMUST00000162048 Mybbp1a-208 retained_intron Ribo-seq
6 sORFs_org_Mouse
17286 ENSMUST00000152894 Mybbp1a-205 retained_intron Ribo-seq
8 sORFs_org_Mouse
1291950 108

ATT...

ISM...

ATT Intronic
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

445865 ENSMUST00000162048 Mybbp1a-208 retained_intron Ribo-seq
1 sORFs_org_Mouse
21874 123

TTG...

LFH...

TTG Intronic
sORF
3T3, E14, MEF,
R1E, Testis, v6-5,
BMDC, Brain, Neutrophil,
Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

17286 ENSMUST00000152894 Mybbp1a-205 retained_intron Ribo-seq
6 sORFs_org_Mouse
445865 ENSMUST00000162048 Mybbp1a-208 retained_intron Ribo-seq
4 sORFs_org_Mouse
18097 114

TTG...

LMR...

TTG Intronic
sORF
Testis
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

17286 ENSMUST00000152894 Mybbp1a-205 retained_intron Ribo-seq
1 sORFs_org_Mouse
649478 102

ATG...

MPL...

ATG Intronic
sORF
3T3, v6-5, B_cell,
BMDC, E14, MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

17286 ENSMUST00000152894 Mybbp1a-205 retained_intron Ribo-seq
2 sORFs_org_Mouse
445865 ENSMUST00000162048 Mybbp1a-208 retained_intron Ribo-seq
3 sORFs_org_Mouse
1694938 ENSMUST00000144374 Mybbp1a-203 retained_intron Ribo-seq
1 sORFs_org_Mouse
20036 105

CTG...

LLR...

CTG Intronic
sORF
Brain, Neutrophil, MEF,
Testis, R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

445865 ENSMUST00000162048 Mybbp1a-208 retained_intron Ribo-seq
2 sORFs_org_Mouse
17286 ENSMUST00000152894 Mybbp1a-205 retained_intron Ribo-seq
3 sORFs_org_Mouse
1837551 ENSMUST00000134119 Mybbp1a-202 retained_intron Ribo-seq
1 sORFs_org_Mouse
19884 36

TTG...

LLE...

TTG Intronic
sORF
Testis
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

18856 ENSMUST00000156833 Mybbp1a-207 retained_intron Ribo-seq
moderate 1 sORFs_org_Mouse
1126517 132

CTG...

LMP...

CTG Intronic
sORF
v6-5, MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

17286 ENSMUST00000152894 Mybbp1a-205 retained_intron Ribo-seq
1 sORFs_org_Mouse
1694938 ENSMUST00000144374 Mybbp1a-203 retained_intron Ribo-seq
1 sORFs_org_Mouse
419028 177

ACG...

TKA...

ACG Intronic
sORF
C2C12, E14, MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

18856 ENSMUST00000156833 Mybbp1a-207 retained_intron Ribo-seq
weak 2 sORFs_org_Mouse
445865 ENSMUST00000162048 Mybbp1a-208 retained_intron Ribo-seq
1 sORFs_org_Mouse
91314 111

CTG...

LDL...

CTG Intronic
sORF
Neutrophil, R1E, MEF,
Testis
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

445865 ENSMUST00000162048 Mybbp1a-208 retained_intron Ribo-seq
1 sORFs_org_Mouse
1837551 ENSMUST00000134119 Mybbp1a-202 retained_intron Ribo-seq
1 sORFs_org_Mouse
17286 ENSMUST00000152894 Mybbp1a-205 retained_intron Ribo-seq
4 sORFs_org_Mouse
1295596 63

AGG...

RRK...

AGG InCDS
Overlapping
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

9458 ENSMUST00000045633 Mybbp1a-201 protein_coding Ribo-seq
1 sORFs_org_Mouse
1079886 39

CTG...

LLK...

CTG Intronic
sORF
R1E, Neutrophil, MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1837551 ENSMUST00000134119 Mybbp1a-202 retained_intron Ribo-seq
1 sORFs_org_Mouse
445865 ENSMUST00000162048 Mybbp1a-208 retained_intron Ribo-seq
1 sORFs_org_Mouse
17286 ENSMUST00000152894 Mybbp1a-205 retained_intron Ribo-seq
1 sORFs_org_Mouse
1289757 147

AAG...

KSV...

AAG Intronic
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

18856 ENSMUST00000156833 Mybbp1a-207 retained_intron Ribo-seq
1 sORFs_org_Mouse
1756924 138

CTG...

LRS...

CTG Intronic
sORF
MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

17286 ENSMUST00000152894 Mybbp1a-205 retained_intron Ribo-seq
1 sORFs_org_Mouse
1295378 78

ATA...

IRG...

ATA InCDS
Overlapping
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

9458 ENSMUST00000045633 Mybbp1a-201 protein_coding Ribo-seq
1 sORFs_org_Mouse
18855 99

TTG...

LDF...

TTG Intronic
sORF
E14, Spleen_B_cell, Testis,
3T3, MEF, NSC,
R1E, v6-5, B_cell,
Brain, Neutrophil
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

18856 ENSMUST00000156833 Mybbp1a-207 retained_intron Ribo-seq
moderate 3 sORFs_org_Mouse
17286 ENSMUST00000152894 Mybbp1a-205 retained_intron Ribo-seq
8 sORFs_org_Mouse
445865 ENSMUST00000162048 Mybbp1a-208 retained_intron Ribo-seq
3 sORFs_org_Mouse
17677 159

GTG...

VMV...

GTG Intronic
sORF
Testis
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

17286 ENSMUST00000152894 Mybbp1a-205 retained_intron Ribo-seq
1 sORFs_org_Mouse
90833 33

TTG...

LEY...

TTG Intronic
sORF
Testis
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

18856 ENSMUST00000156833 Mybbp1a-207 retained_intron Ribo-seq
moderate 1 sORFs_org_Mouse
654406 177

CTG...

LSL...

CTG Alternative
InCDS
Overlapping
sORF
3T3, B_cell, E14,
NSC, R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

9458 ENSMUST00000045633 Mybbp1a-201 protein_coding Ribo-seq
5 sORFs_org_Mouse
642740 51

ATG...

MGS...

ATG Intronic
sORF
InCDS
Overlapping
3T3, R1E, v6-5,
B_cell, Glioma, Liver,
MEF, MESC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

17286 ENSMUST00000152894 Mybbp1a-205 retained_intron Ribo-seq
strong 3 sORFs_org_Mouse
445865 ENSMUST00000162048 Mybbp1a-208 retained_intron Ribo-seq
strong 1 sORFs_org_Mouse
9458 ENSMUST00000045633 Mybbp1a-201 protein_coding Ribo-seq
strong 1 Johnstone2016
1291765 72

ACG...

TKQ...

ACG Intronic
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

445865 ENSMUST00000162048 Mybbp1a-208 retained_intron Ribo-seq
1 sORFs_org_Mouse
19594 117

CTG...

LIL...

CTG Intronic
sORF
Brain, E14, Neutrophil,
Spleen_B_cell, MEF, R1E,
Testis
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

445865 ENSMUST00000162048 Mybbp1a-208 retained_intron Ribo-seq
4 sORFs_org_Mouse
17286 ENSMUST00000152894 Mybbp1a-205 retained_intron Ribo-seq
4 sORFs_org_Mouse
660159 129

CTG...

LDI...

CTG Alternative
InCDS
Overlapping
sORF
3T3, E14, MEF,
v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

9458 ENSMUST00000045633 Mybbp1a-201 protein_coding Ribo-seq
4 sORFs_org_Mouse
1286654 135

AAG...

KQP...

AAG Intronic
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

445865 ENSMUST00000162048 Mybbp1a-208 retained_intron Ribo-seq
1 sORFs_org_Mouse
18671 81

CTG...

LQP...

CTG Intronic
sORF
BMDC, Brain, Neutrophil,
3T3, E14, MEF,
R1E, Testis, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

445865 ENSMUST00000162048 Mybbp1a-208 retained_intron Ribo-seq
3 sORFs_org_Mouse
17286 ENSMUST00000152894 Mybbp1a-205 retained_intron Ribo-seq
9 sORFs_org_Mouse
91929 96

TTG...

LRD...

TTG Intronic
sORF
BMDC, Brain, E14,
Neutrophil, Spleen_B_cell, MEF,
R1E, Testis
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

445865 ENSMUST00000162048 Mybbp1a-208 retained_intron Ribo-seq
6 sORFs_org_Mouse
17286 ENSMUST00000152894 Mybbp1a-205 retained_intron Ribo-seq
6 sORFs_org_Mouse
1124471 123

CTG...

LSP...

CTG Intronic
sORF
MEF, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1694938 ENSMUST00000144374 Mybbp1a-203 retained_intron Ribo-seq
1 sORFs_org_Mouse
17286 ENSMUST00000152894 Mybbp1a-205 retained_intron Ribo-seq
1 sORFs_org_Mouse
1290201 99

AAG...

KKA...

AAG Intronic
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

445865 ENSMUST00000162048 Mybbp1a-208 retained_intron Ribo-seq
1 sORFs_org_Mouse
18102 156

CTG...

LIE...

CTG Intronic
sORF
3T3, E14, MEF,
R1E, Testis, Brain,
Neutrophil, Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

17286 ENSMUST00000152894 Mybbp1a-205 retained_intron Ribo-seq
5 sORFs_org_Mouse
445865 ENSMUST00000162048 Mybbp1a-208 retained_intron Ribo-seq
4 sORFs_org_Mouse
1340988 30

TTG...

LGR...

TTG Intronic
sORF
E14, R1E, Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

17286 ENSMUST00000152894 Mybbp1a-205 retained_intron Ribo-seq
1 sORFs_org_Mouse
1837551 ENSMUST00000134119 Mybbp1a-202 retained_intron Ribo-seq
strong 1 sORFs_org_Mouse
445865 ENSMUST00000162048 Mybbp1a-208 retained_intron Ribo-seq
1 sORFs_org_Mouse
18714 132

TTG...

LNA...

TTG Intronic
sORF
BMDC, Brain, E14,
Neutrophil, Spleen_B_cell, 3T3,
MEF, R1E, Testis,
v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

445865 ENSMUST00000162048 Mybbp1a-208 retained_intron Ribo-seq
5 sORFs_org_Mouse
17286 ENSMUST00000152894 Mybbp1a-205 retained_intron Ribo-seq
8 sORFs_org_Mouse
90873 165

CTG...

LKV...

CTG Intronic
sORF
3T3, E14, MEF,
NSC, R1E, Testis,
v6-5, B_cell, Brain,
Neutrophil, Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

17286 ENSMUST00000152894 Mybbp1a-205 retained_intron Ribo-seq
9 sORFs_org_Mouse
445865 ENSMUST00000162048 Mybbp1a-208 retained_intron Ribo-seq
4 sORFs_org_Mouse
777857 162

CTG...

LMT...

CTG Alternative
InCDS
Overlapping
sORF
B_cell, MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

9458 ENSMUST00000045633 Mybbp1a-201 protein_coding Ribo-seq
4 sORFs_org_Mouse
655890 87

TTG...

LRN...

TTG Alternative
InCDS
Overlapping
sORF
3T3, B_cell, E14,
MEF, R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

9458 ENSMUST00000045633 Mybbp1a-201 protein_coding Ribo-seq
5 sORFs_org_Mouse
19018 228

CTG...

LSQ...

CTG Intronic
sORF
Testis
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

17286 ENSMUST00000152894 Mybbp1a-205 retained_intron Ribo-seq
moderate 1 sORFs_org_Mouse
1840167 36

CTG...

LKN...

CTG Intronic
sORF
R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1837551 ENSMUST00000134119 Mybbp1a-202 retained_intron Ribo-seq
1 sORFs_org_Mouse
91344 144

CTG...

LVT...

CTG Intronic
sORF
Brain, Neutrophil, Spleen_B_cell,
3T3, E14, MEF,
R1E, Testis
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

445865 ENSMUST00000162048 Mybbp1a-208 retained_intron Ribo-seq
3 sORFs_org_Mouse
17286 ENSMUST00000152894 Mybbp1a-205 retained_intron Ribo-seq
5 sORFs_org_Mouse
19529 84

GTG...

VIQ...

GTG Intronic
sORF
Neutrophil, E14, R1E,
Testis
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

445865 ENSMUST00000162048 Mybbp1a-208 retained_intron Ribo-seq
1 sORFs_org_Mouse
17286 ENSMUST00000152894 Mybbp1a-205 retained_intron Ribo-seq
3 sORFs_org_Mouse
21692 153

GTG...

VKF...

GTG Intronic
sORF
B_cell, BMDC, Brain,
Neutrophil, Spleen_B_cell, 3T3,
E14, MEF, NSC,
R1E, Testis, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

445865 ENSMUST00000162048 Mybbp1a-208 retained_intron Ribo-seq
moderate 5 sORFs_org_Mouse
17286 ENSMUST00000152894 Mybbp1a-205 retained_intron Ribo-seq
10 sORFs_org_Mouse
91711 159

GTG...

VAA...

GTG Intronic
sORF
3T3, E14, MEF,
NSC, R1E, Testis,
v6-5, B_cell, Brain,
Neutrophil, Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

17286 ENSMUST00000152894 Mybbp1a-205 retained_intron Ribo-seq
9 sORFs_org_Mouse
445865 ENSMUST00000162048 Mybbp1a-208 retained_intron Ribo-seq
4 sORFs_org_Mouse
1127532 51

GTG...

VYL...

GTG Intronic
sORF
E14, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

17286 ENSMUST00000152894 Mybbp1a-205 retained_intron Ribo-seq
moderate 2 sORFs_org_Mouse
656972 120

ATG...

MPL...

ATG InCDS
Overlapping
sORF
3T3, B_cell, BMDC,
E14, MEF, Neutrophil,
v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

9458 ENSMUST00000045633 Mybbp1a-201 protein_coding Ribo-seq
8 sORFs_org_Mouse
18249 177

CTG...

LVN...

CTG Intronic
sORF
B_cell, Brain, Neutrophil,
Spleen_B_cell, 3T3, E14,
MEF, NSC, R1E,
Testis, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

445865 ENSMUST00000162048 Mybbp1a-208 retained_intron Ribo-seq
4 sORFs_org_Mouse
17286 ENSMUST00000152894 Mybbp1a-205 retained_intron Ribo-seq
9 sORFs_org_Mouse
1600713 84

GTG...

VTW...

GTG Intronic
sORF
MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

17286 ENSMUST00000152894 Mybbp1a-205 retained_intron Ribo-seq
moderate 3 sORFs_org_Mouse
8676 54

ATG...

MPD...

ATG Intronic
sORF
Alternative
InCDS
Overlapping
Skin_tumor, Glioma, Liver,
MEF, MESC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

8677 ENSMUST00000155995 Mybbp1a-206 retained_intron Ribo-seq
moderate 1 sORFs_org_Mouse
9458 ENSMUST00000045633 Mybbp1a-201 protein_coding Ribo-seq
moderate 1 Johnstone2016
1039022 141

CTG...

LSP...

CTG InCDS
Overlapping
sORF
MEF, Neutrophil, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

9458 ENSMUST00000045633 Mybbp1a-201 protein_coding Ribo-seq
4 sORFs_org_Mouse
18377 126

CTG...

LPN...

CTG Intronic
sORF
B_cell, Brain, Neutrophil,
R1E, 3T3, MEF,
Testis, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

445865 ENSMUST00000162048 Mybbp1a-208 retained_intron Ribo-seq
3 sORFs_org_Mouse
1837551 ENSMUST00000134119 Mybbp1a-202 retained_intron Ribo-seq
1 sORFs_org_Mouse
17286 ENSMUST00000152894 Mybbp1a-205 retained_intron Ribo-seq
6 sORFs_org_Mouse
651039 105

CTG...

LSE...

CTG Intronic
sORF
3T3, MEF, NSC,
R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

17286 ENSMUST00000152894 Mybbp1a-205 retained_intron Ribo-seq
weak 6 sORFs_org_Mouse
454230 111

GTG...

VLP...

GTG Intronic
sORF
Spleen_B_cell, R1E, 3T3,
E14, MEF, NSC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

445865 ENSMUST00000162048 Mybbp1a-208 retained_intron Ribo-seq
weak 1 sORFs_org_Mouse
1837551 ENSMUST00000134119 Mybbp1a-202 retained_intron Ribo-seq
weak 1 sORFs_org_Mouse
17286 ENSMUST00000152894 Mybbp1a-205 retained_intron Ribo-seq
weak 4 sORFs_org_Mouse
20351 120

CTG...

LEH...

CTG Intronic
sORF
B_cell, Brain, Neutrophil,
E14, Spleen_B_cell, Testis,
3T3, MEF, NSC,
R1E, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

445865 ENSMUST00000162048 Mybbp1a-208 retained_intron Ribo-seq
3 sORFs_org_Mouse
18856 ENSMUST00000156833 Mybbp1a-207 retained_intron Ribo-seq
moderate 3 sORFs_org_Mouse
17286 ENSMUST00000152894 Mybbp1a-205 retained_intron Ribo-seq
8 sORFs_org_Mouse
1482527 60

TTG...

LGR...

TTG Intronic
sORF
BMDC, R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

8677 ENSMUST00000155995 Mybbp1a-206 retained_intron Ribo-seq
moderate 2 sORFs_org_Mouse
445863 57

TTG...

LGW...

TTG Intronic
sORF
Brain, Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

445865 ENSMUST00000162048 Mybbp1a-208 retained_intron Ribo-seq
1 sORFs_org_Mouse
18856 ENSMUST00000156833 Mybbp1a-207 retained_intron Ribo-seq
1 sORFs_org_Mouse
18453 117

CTG...

LQS...

CTG Intronic
sORF
B_cell, BMDC, Brain,
Neutrophil, Spleen_B_cell, 3T3,
E14, MEF, R1E,
Testis, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

445865 ENSMUST00000162048 Mybbp1a-208 retained_intron Ribo-seq
5 sORFs_org_Mouse
17286 ENSMUST00000152894 Mybbp1a-205 retained_intron Ribo-seq
8 sORFs_org_Mouse
91235 36

TTG...

LTT...

TTG Intronic
sORF
MEF, Testis, Brain,
Neutrophil
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

17286 ENSMUST00000152894 Mybbp1a-205 retained_intron Ribo-seq
3 sORFs_org_Mouse
445865 ENSMUST00000162048 Mybbp1a-208 retained_intron Ribo-seq
weak 2 sORFs_org_Mouse
18817 174

GTG...

VNI...

GTG Intronic
sORF
3T3, E14, MEF,
NSC, R1E, Testis,
v6-5, B_cell, Brain,
Neutrophil, Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

17286 ENSMUST00000152894 Mybbp1a-205 retained_intron Ribo-seq
9 sORFs_org_Mouse
445865 ENSMUST00000162048 Mybbp1a-208 retained_intron Ribo-seq
4 sORFs_org_Mouse
652025 132

GTG...

VTP...

GTG Intronic
sORF
3T3, v6-5, B_cell,
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

17286 ENSMUST00000152894 Mybbp1a-205 retained_intron Ribo-seq
weak 2 sORFs_org_Mouse
445865 ENSMUST00000162048 Mybbp1a-208 retained_intron Ribo-seq
weak 2 sORFs_org_Mouse
19500 153

CTG...

LMK...

CTG Intronic
sORF
Testis, Neutrophil
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

18856 ENSMUST00000156833 Mybbp1a-207 retained_intron Ribo-seq
1 sORFs_org_Mouse
445865 ENSMUST00000162048 Mybbp1a-208 retained_intron Ribo-seq
1 sORFs_org_Mouse
1127228 51

TTG...

LWI...

TTG Intronic
sORF
MEF, R1E, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

17286 ENSMUST00000152894 Mybbp1a-205 retained_intron Ribo-seq
moderate 5 sORFs_org_Mouse
653554 150

ATG...

MPR...

ATG Intronic
sORF
InCDS
Overlapping
3T3, E14, MEF,
v6-5, Glioma, Liver,
MESC, B_cell,
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

17286 ENSMUST00000152894 Mybbp1a-205 retained_intron Ribo-seq
moderate 4 sORFs_org_Mouse
9458 ENSMUST00000045633 Mybbp1a-201 protein_coding Ribo-seq
moderate 1 Johnstone2016
445865 ENSMUST00000162048 Mybbp1a-208 retained_intron Ribo-seq
moderate 2 sORFs_org_Mouse
3044304 UNKNOWN_TRANSCRIPT Predicted
1 Samandi2017
1295218 87

ATC...

IRP...

ATC Alternative
InCDS
Overlapping
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

9458 ENSMUST00000045633 Mybbp1a-201 protein_coding Ribo-seq
1 sORFs_org_Mouse
1596132 120

CTG...

LWI...

CTG Intronic
sORF
MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

17286 ENSMUST00000152894 Mybbp1a-205 retained_intron Ribo-seq
2 sORFs_org_Mouse
91179 75

CTG...

LLN...

CTG Intronic
sORF
B_cell, BMDC, Brain,
Neutrophil, 3T3, E14,
MEF, NSC, R1E,
Testis, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

445865 ENSMUST00000162048 Mybbp1a-208 retained_intron Ribo-seq
moderate 4 sORFs_org_Mouse
17286 ENSMUST00000152894 Mybbp1a-205 retained_intron Ribo-seq
10 sORFs_org_Mouse
654179 111

ATG...

MCL...

ATG sORF
Alternative
InCDS
Overlapping
3T3, Glioma,
Liver, MEF, MESC,
R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

3044304 UNKNOWN_TRANSCRIPT Predicted
1 Samandi2017
9458 ENSMUST00000045633 Mybbp1a-201 protein_coding Ribo-seq
6 sORFs_org_Mouse
Johnstone2016
776729 171

CTG...

LRL...

CTG Alternative
InCDS
Overlapping
sORF
B_cell, E14, NSC,
R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

9458 ENSMUST00000045633 Mybbp1a-201 protein_coding Ribo-seq
4 sORFs_org_Mouse
1597463 63

ATG...

MLK...

ATG Intronic
sORF
Alternative
InCDS
Overlapping
MEF, Glioma, Liver,
MESC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

17286 ENSMUST00000152894 Mybbp1a-205 retained_intron Ribo-seq
weak 2 sORFs_org_Mouse
9458 ENSMUST00000045633 Mybbp1a-201 protein_coding Ribo-seq
weak 1 Johnstone2016
17851 90

CTG...

LNV...

CTG Intronic
sORF
E14, R1E, Testis,
Neutrophil
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

17286 ENSMUST00000152894 Mybbp1a-205 retained_intron Ribo-seq
3 sORFs_org_Mouse
445865 ENSMUST00000162048 Mybbp1a-208 retained_intron Ribo-seq
1 sORFs_org_Mouse
1078906 117

TTG...

LQS...

TTG Intronic
sORF
Neutrophil, NSC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

445865 ENSMUST00000162048 Mybbp1a-208 retained_intron Ribo-seq
1 sORFs_org_Mouse
17286 ENSMUST00000152894 Mybbp1a-205 retained_intron Ribo-seq
1 sORFs_org_Mouse
931982 141

ATA...

IFL...

ATA Intronic
sORF
InCDS
Overlapping
E14, BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

445865 ENSMUST00000162048 Mybbp1a-208 retained_intron Ribo-seq
moderate 1 sORFs_org_Mouse
9458 ENSMUST00000045633 Mybbp1a-201 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
21792 69

CTG...

LNS...

CTG Intronic
sORF
3T3, E14, MEF,
R1E, Testis, v6-5,
B_cell, BMDC, Brain,
Neutrophil
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

17286 ENSMUST00000152894 Mybbp1a-205 retained_intron Ribo-seq
9 sORFs_org_Mouse
445865 ENSMUST00000162048 Mybbp1a-208 retained_intron Ribo-seq
5 sORFs_org_Mouse
652051 117

CTG...

LLP...

CTG Intronic
sORF
3T3, MEF, R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

17286 ENSMUST00000152894 Mybbp1a-205 retained_intron Ribo-seq
5 sORFs_org_Mouse
643183 66

TTG...

LKT...

TTG Intronic
sORF
NSC, 3T3, MEF,
R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

445865 ENSMUST00000162048 Mybbp1a-208 retained_intron Ribo-seq
weak 1 sORFs_org_Mouse
17286 ENSMUST00000152894 Mybbp1a-205 retained_intron Ribo-seq
weak 3 sORFs_org_Mouse
1129364 147

ATG...

MPL...

ATG InCDS
Overlapping
sORF
MEF, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

9458 ENSMUST00000045633 Mybbp1a-201 protein_coding Ribo-seq
2 sORFs_org_Mouse
639632 87

ATG...

MWL...

ATG Intronic
sORF
Alternative
InCDS
Overlapping
3T3, MEF, B_cell,
Glioma, Liver, MESC,
R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

17286 ENSMUST00000152894 Mybbp1a-205 retained_intron Ribo-seq
weak 4 sORFs_org_Mouse
445865 ENSMUST00000162048 Mybbp1a-208 retained_intron Ribo-seq
weak 1 sORFs_org_Mouse
9458 ENSMUST00000045633 Mybbp1a-201 protein_coding Ribo-seq
weak 1 Johnstone2016
1837551 ENSMUST00000134119 Mybbp1a-202 retained_intron Ribo-seq
weak 1 sORFs_org_Mouse
17308 129

CTG...

LAE...

CTG Intronic
sORF
3T3, E14, MEF,
NSC, R1E, Testis,
v6-5, B_cell, BMDC,
Brain, Neutrophil, Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

17286 ENSMUST00000152894 Mybbp1a-205 retained_intron Ribo-seq
10 sORFs_org_Mouse
445865 ENSMUST00000162048 Mybbp1a-208 retained_intron Ribo-seq
strong 5 sORFs_org_Mouse
1129713 51

GTG...

VGS...

GTG Alternative
InCDS
Overlapping
sORF
Brain, R1E, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

9458 ENSMUST00000045633 Mybbp1a-201 protein_coding Ribo-seq
3 sORFs_org_Mouse
21953 123

CTG...

LLE...

CTG Intronic
sORF
B_cell, Brain, Neutrophil,
3T3, E14, MEF,
NSC, R1E, v6-5,
Spleen_B_cell, Testis
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

445865 ENSMUST00000162048 Mybbp1a-208 retained_intron Ribo-seq
3 sORFs_org_Mouse
17286 ENSMUST00000152894 Mybbp1a-205 retained_intron Ribo-seq
8 sORFs_org_Mouse
18856 ENSMUST00000156833 Mybbp1a-207 retained_intron Ribo-seq
moderate 2 sORFs_org_Mouse
21700 48

TTG...

LDD...

TTG Intronic
sORF
Brain, Neutrophil, Testis,
v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

445865 ENSMUST00000162048 Mybbp1a-208 retained_intron Ribo-seq
2 sORFs_org_Mouse
17286 ENSMUST00000152894 Mybbp1a-205 retained_intron Ribo-seq
2 sORFs_org_Mouse
19951 60

TTG...

LVD...

TTG Intronic
sORF
E14, MEF, Testis,
v6-5, BMDC, Neutrophil
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

17286 ENSMUST00000152894 Mybbp1a-205 retained_intron Ribo-seq
6 sORFs_org_Mouse
445865 ENSMUST00000162048 Mybbp1a-208 retained_intron Ribo-seq
3 sORFs_org_Mouse
770492 45

ATG...

MVI...

ATG Intronic
sORF
B_cell, MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

445865 ENSMUST00000162048 Mybbp1a-208 retained_intron Ribo-seq
1 sORFs_org_Mouse
17286 ENSMUST00000152894 Mybbp1a-205 retained_intron Ribo-seq
2 sORFs_org_Mouse
1694938 ENSMUST00000144374 Mybbp1a-203 retained_intron Ribo-seq
1 sORFs_org_Mouse
654094 60

TTG...

LGR...

TTG Alternative
InCDS
Overlapping
sORF
3T3, E14, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

9458 ENSMUST00000045633 Mybbp1a-201 protein_coding Ribo-seq
3 sORFs_org_Mouse
450841 63

CTG...

LGL...

CTG Intronic
sORF
Brain, Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

445865 ENSMUST00000162048 Mybbp1a-208 retained_intron Ribo-seq
1 sORFs_org_Mouse
18856 ENSMUST00000156833 Mybbp1a-207 retained_intron Ribo-seq
1 sORFs_org_Mouse
652902 57

CTG...

LKM...

CTG Intronic
sORF
B_cell, 3T3, R1E,
v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

445865 ENSMUST00000162048 Mybbp1a-208 retained_intron Ribo-seq
weak 1 sORFs_org_Mouse
17286 ENSMUST00000152894 Mybbp1a-205 retained_intron Ribo-seq
weak 3 sORFs_org_Mouse
1603361 39

TTG...

LTC...

TTG Alternative
InCDS
Overlapping
sORF
MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

9458 ENSMUST00000045633 Mybbp1a-201 protein_coding Ribo-seq
2 sORFs_org_Mouse
91363 249

CTG...

LQK...

CTG Intronic
sORF
Testis
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

17286 ENSMUST00000152894 Mybbp1a-205 retained_intron Ribo-seq
moderate 1 sORFs_org_Mouse
91491 141

CTG...

LSL...

CTG Intronic
sORF
Testis
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

17286 ENSMUST00000152894 Mybbp1a-205 retained_intron Ribo-seq
1 sORFs_org_Mouse
19479 213

TTG...

LTM...

TTG Intronic
sORF
B_cell, BMDC, Brain,
Neutrophil, Spleen_B_cell, 3T3,
E14, MEF, R1E,
Testis, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

445865 ENSMUST00000162048 Mybbp1a-208 retained_intron Ribo-seq
5 sORFs_org_Mouse
17286 ENSMUST00000152894 Mybbp1a-205 retained_intron Ribo-seq
9 sORFs_org_Mouse
90839 168

CTG...

LQT...

CTG Intronic
sORF
3T3, E14, MEF,
NSC, R1E, Testis,
v6-5, B_cell, BMDC,
Brain, Neutrophil, Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

17286 ENSMUST00000152894 Mybbp1a-205 retained_intron Ribo-seq
10 sORFs_org_Mouse
445865 ENSMUST00000162048 Mybbp1a-208 retained_intron Ribo-seq
weak 5 sORFs_org_Mouse
1295850 183

ATT...

IRT...

ATT Alternative
InCDS
Overlapping
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

9458 ENSMUST00000045633 Mybbp1a-201 protein_coding Ribo-seq
1 sORFs_org_Mouse
456050 132

TTG...

LGW...

TTG Alternative
InCDS
Overlapping
sORF
Brain, MEF, NSC,
Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

9458 ENSMUST00000045633 Mybbp1a-201 protein_coding Ribo-seq
4 sORFs_org_Mouse
654594 171

CTG...

LEE...

CTG Alternative
InCDS
Overlapping
sORF
3T3, E14, MEF,
v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

9458 ENSMUST00000045633 Mybbp1a-201 protein_coding Ribo-seq
5 sORFs_org_Mouse
1078937 120

CTG...

LLQ...

CTG Intronic
sORF
Neutrophil
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

445865 ENSMUST00000162048 Mybbp1a-208 retained_intron Ribo-seq
1 sORFs_org_Mouse
1286478 90

ACG...

TPQ...

ACG Intronic
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

445865 ENSMUST00000162048 Mybbp1a-208 retained_intron Ribo-seq
1 sORFs_org_Mouse
1484036 45

GTG...

VRL...

GTG Intronic
sORF
BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

445865 ENSMUST00000162048 Mybbp1a-208 retained_intron Ribo-seq
weak 1 sORFs_org_Mouse
1703151 48

TTG...

LTS...

TTG Intronic
sORF
MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

17286 ENSMUST00000152894 Mybbp1a-205 retained_intron Ribo-seq
weak 1 sORFs_org_Mouse
446701 96

CTG...

LVL...

CTG Intronic
sORF
NSC, Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

17286 ENSMUST00000152894 Mybbp1a-205 retained_intron Ribo-seq
1 sORFs_org_Mouse
18856 ENSMUST00000156833 Mybbp1a-207 retained_intron Ribo-seq
1 sORFs_org_Mouse
21472 198

CTG...

LPK...

CTG Intronic
sORF
Testis
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

17286 ENSMUST00000152894 Mybbp1a-205 retained_intron Ribo-seq
1 sORFs_org_Mouse
1287521 162

ACG...

TLS...

ACG Intronic
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

445865 ENSMUST00000162048 Mybbp1a-208 retained_intron Ribo-seq
weak 1 sORFs_org_Mouse
1339839 45

TTG...

LVI...

TTG Intronic
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

17286 ENSMUST00000152894 Mybbp1a-205 retained_intron Ribo-seq
moderate 1 sORFs_org_Mouse
21827 111

CTG...

LEL...

CTG Intronic
sORF
E14, R1E, Testis,
Brain, Neutrophil, Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

17286 ENSMUST00000152894 Mybbp1a-205 retained_intron Ribo-seq
3 sORFs_org_Mouse
445865 ENSMUST00000162048 Mybbp1a-208 retained_intron Ribo-seq
4 sORFs_org_Mouse
1701547 72

GTG...

VRM...

GTG Intronic
sORF
MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

17286 ENSMUST00000152894 Mybbp1a-205 retained_intron Ribo-seq
moderate 1 sORFs_org_Mouse
19861 72

TTG...

LNH...

TTG Intronic
sORF
3T3, E14, MEF,
NSC, R1E, Testis,
v6-5, B_cell, BMDC,
Brain, Neutrophil
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

17286 ENSMUST00000152894 Mybbp1a-205 retained_intron Ribo-seq
9 sORFs_org_Mouse
445865 ENSMUST00000162048 Mybbp1a-208 retained_intron Ribo-seq
weak 4 sORFs_org_Mouse
1600851 60

CTG...

LKP...

CTG Intronic
sORF
MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

17286 ENSMUST00000152894 Mybbp1a-205 retained_intron Ribo-seq
moderate 2 sORFs_org_Mouse
1482603 39

CTG...

LSC...

CTG Intronic
sORF
BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

445865 ENSMUST00000162048 Mybbp1a-208 retained_intron Ribo-seq
weak 1 sORFs_org_Mouse
650340 114

CTG...

LSR...

CTG Intronic
sORF
3T3, MEF, NSC,
B_cell, R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

17286 ENSMUST00000152894 Mybbp1a-205 retained_intron Ribo-seq
moderate 4 sORFs_org_Mouse
445865 ENSMUST00000162048 Mybbp1a-208 retained_intron Ribo-seq
moderate 1 sORFs_org_Mouse
1837551 ENSMUST00000134119 Mybbp1a-202 retained_intron Ribo-seq
1 sORFs_org_Mouse
447482 90

TTG...

LPG...

TTG Intronic
sORF
Spleen_B_cell, MEF, NSC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

18856 ENSMUST00000156833 Mybbp1a-207 retained_intron Ribo-seq
1 sORFs_org_Mouse
17286 ENSMUST00000152894 Mybbp1a-205 retained_intron Ribo-seq
2 sORFs_org_Mouse
448467 72

CTG...

LCP...

CTG Intronic
sORF
Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

18856 ENSMUST00000156833 Mybbp1a-207 retained_intron Ribo-seq
1 sORFs_org_Mouse
457006 138

CTG...

LGL...

CTG Alternative
InCDS
Overlapping
sORF
Brain, NSC, Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

9458 ENSMUST00000045633 Mybbp1a-201 protein_coding Ribo-seq
3 sORFs_org_Mouse
19558 144

TTG...

LLS...

TTG Intronic
sORF
Testis
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

17286 ENSMUST00000152894 Mybbp1a-205 retained_intron Ribo-seq
1 sORFs_org_Mouse
1695792 54

GTG...

VKR...

GTG Intronic
sORF
MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

17286 ENSMUST00000152894 Mybbp1a-205 retained_intron Ribo-seq
moderate 1 sORFs_org_Mouse
1695273 144

CTG...

LAA...

CTG Intronic
sORF
MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1694938 ENSMUST00000144374 Mybbp1a-203 retained_intron Ribo-seq
1 sORFs_org_Mouse
455324 66

ATG...

MRR...

ATG InCDS
Overlapping
sORF
Glioma, Liver, MEF,
MESC, Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

9458 ENSMUST00000045633 Mybbp1a-201 protein_coding Ribo-seq
2 sORFs_org_Mouse
Johnstone2016
9457 51

CTG...

LGP...

CTG Alternative
InCDS
Overlapping
sORF
MEF, Skin_tumor
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

9458 ENSMUST00000045633 Mybbp1a-201 protein_coding Ribo-seq
2 sORFs_org_Mouse
21510 96

CTG...

LVQ...

CTG Intronic
sORF
3T3, E14, MEF,
NSC, R1E, Testis,
v6-5, B_cell, BMDC,
Brain, Neutrophil, Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

17286 ENSMUST00000152894 Mybbp1a-205 retained_intron Ribo-seq
9 sORFs_org_Mouse
445865 ENSMUST00000162048 Mybbp1a-208 retained_intron Ribo-seq
moderate 5 sORFs_org_Mouse
1844583 42

TTG...

LSV...

TTG Alternative
InCDS
Overlapping
sORF
R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

9458 ENSMUST00000045633 Mybbp1a-201 protein_coding Ribo-seq
1 sORFs_org_Mouse
17285 258

GTG...

VGT...

GTG Intronic
sORF
3T3, E14, MEF,
NSC, R1E, Testis,
v6-5, B_cell, BMDC,
Brain, Neutrophil, Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

17286 ENSMUST00000152894 Mybbp1a-205 retained_intron Ribo-seq
10 sORFs_org_Mouse
445865 ENSMUST00000162048 Mybbp1a-208 retained_intron Ribo-seq
5 sORFs_org_Mouse
1295228 66

AAG...

KMV...

AAG InCDS
Overlapping
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

9458 ENSMUST00000045633 Mybbp1a-201 protein_coding Ribo-seq
1 sORFs_org_Mouse
1287093 81

ATC...

IPE...

ATC Intronic
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

445865 ENSMUST00000162048 Mybbp1a-208 retained_intron Ribo-seq
1 sORFs_org_Mouse
20098 153

GTG...

VEI...

GTG Intronic
sORF
Testis
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

17286 ENSMUST00000152894 Mybbp1a-205 retained_intron Ribo-seq
1 sORFs_org_Mouse
19367 96

CTG...

LAL...

CTG Intronic
sORF
MEF, NSC, Testis,
Neutrophil, R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

17286 ENSMUST00000152894 Mybbp1a-205 retained_intron Ribo-seq
4 sORFs_org_Mouse
445865 ENSMUST00000162048 Mybbp1a-208 retained_intron Ribo-seq
1 sORFs_org_Mouse
1837551 ENSMUST00000134119 Mybbp1a-202 retained_intron Ribo-seq
1 sORFs_org_Mouse
1602066 159

ATG...

MTL...

ATG Alternative
InCDS
Overlapping
sORF
MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

9458 ENSMUST00000045633 Mybbp1a-201 protein_coding Ribo-seq
2 sORFs_org_Mouse
18247 30

CTG...

LHK...

CTG Intronic
sORF
Testis
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

17286 ENSMUST00000152894 Mybbp1a-205 retained_intron Ribo-seq
1 sORFs_org_Mouse
1696826 81

ATG...

MTT...

ATG Intronic
sORF
MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

17286 ENSMUST00000152894 Mybbp1a-205 retained_intron Ribo-seq
moderate 1 sORFs_org_Mouse
1597319 108

ATG...

MRT...

ATG Intronic
sORF
MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

17286 ENSMUST00000152894 Mybbp1a-205 retained_intron Ribo-seq
moderate 3 sORFs_org_Mouse
17594 132

CTG...

LAQ...

CTG Intronic
sORF
Testis
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

17286 ENSMUST00000152894 Mybbp1a-205 retained_intron Ribo-seq
1 sORFs_org_Mouse
1285455 141

ACG...

TRF...

ACG Intronic
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

445865 ENSMUST00000162048 Mybbp1a-208 retained_intron Ribo-seq
1 sORFs_org_Mouse
19329 165

GTG...

VEV...

GTG Intronic
sORF
Testis
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

17286 ENSMUST00000152894 Mybbp1a-205 retained_intron Ribo-seq
1 sORFs_org_Mouse
1695603 87

ATG...

MRM...

ATG Intronic
sORF
MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

17286 ENSMUST00000152894 Mybbp1a-205 retained_intron Ribo-seq
moderate 1 sORFs_org_Mouse
21263 168

GTG...

VIL...

GTG Intronic
sORF
Testis
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

17286 ENSMUST00000152894 Mybbp1a-205 retained_intron Ribo-seq
1 sORFs_org_Mouse
641691 96

CTG...

LYS...

CTG Intronic
sORF
3T3, MEF, NSC,
R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

17286 ENSMUST00000152894 Mybbp1a-205 retained_intron Ribo-seq
moderate 6 sORFs_org_Mouse
656424 84

CTG...

LGH...

CTG Alternative
InCDS
Overlapping
sORF
3T3, E14, MEF,
NSC, R1E, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

9458 ENSMUST00000045633 Mybbp1a-201 protein_coding Ribo-seq
6 sORFs_org_Mouse
1601651 63

ATG...

MRR...

ATG Intronic
sORF
MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

17286 ENSMUST00000152894 Mybbp1a-205 retained_intron Ribo-seq
1 sORFs_org_Mouse
1339667 48

TTG...

LDL...

TTG Intronic
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

17286 ENSMUST00000152894 Mybbp1a-205 retained_intron Ribo-seq
strong 1 sORFs_org_Mouse
22079 201

GTG...

VAF...

GTG Intronic
sORF
B_cell, BMDC, Brain,
E14, Neutrophil, Spleen_B_cell,
3T3, MEF, NSC,
R1E, Testis, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

445865 ENSMUST00000162048 Mybbp1a-208 retained_intron Ribo-seq
6 sORFs_org_Mouse
17286 ENSMUST00000152894 Mybbp1a-205 retained_intron Ribo-seq
9 sORFs_org_Mouse
19336 102

GTG...

VVR...

GTG Intronic
sORF
Testis
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

17286 ENSMUST00000152894 Mybbp1a-205 retained_intron Ribo-seq
1 sORFs_org_Mouse
19390 141

GTG...

VTK...

GTG Intronic
sORF
3T3, E14, MEF,
R1E, Testis, Brain,
Neutrophil, Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

17286 ENSMUST00000152894 Mybbp1a-205 retained_intron Ribo-seq
5 sORFs_org_Mouse
445865 ENSMUST00000162048 Mybbp1a-208 retained_intron Ribo-seq
4 sORFs_org_Mouse
19846 135

TTG...

LLA...

TTG Intronic
sORF
Testis
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

17286 ENSMUST00000152894 Mybbp1a-205 retained_intron Ribo-seq
1 sORFs_org_Mouse
22145 60

CTG...

LLQ...

CTG Intronic
sORF
Testis
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

17286 ENSMUST00000152894 Mybbp1a-205 retained_intron Ribo-seq
moderate 1 sORFs_org_Mouse
91211 201

GTG...

VSP...

GTG Intronic
sORF
Neutrophil, Testis
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

17286 ENSMUST00000152894 Mybbp1a-205 retained_intron Ribo-seq
weak 2 sORFs_org_Mouse
1596367 57

GTG...

VDH...

GTG Intronic
sORF
MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

17286 ENSMUST00000152894 Mybbp1a-205 retained_intron Ribo-seq
strong 2 sORFs_org_Mouse
1603151 150

ATG...

MRS...

ATG Alternative
InCDS
Overlapping
sORF
MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

9458 ENSMUST00000045633 Mybbp1a-201 protein_coding Ribo-seq
2 sORFs_org_Mouse
659155 135

ATG...

MPS...

ATG Alternative
InCDS
Overlapping
sORF
3T3, Glioma, Liver,
MEF, MESC, R1E,
v6-5,
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

9458 ENSMUST00000045633 Mybbp1a-201 protein_coding Ribo-seq
4 sORFs_org_Mouse
Johnstone2016
3044304 UNKNOWN_TRANSCRIPT Predicted
1 Samandi2017
1843404 165

CTG...

LGA...

CTG Intronic
sORF
R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1837551 ENSMUST00000134119 Mybbp1a-202 retained_intron Ribo-seq
moderate 1 sORFs_org_Mouse
1294563 72

AGG...

RKR...

AGG Alternative
InCDS
Overlapping
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

9458 ENSMUST00000045633 Mybbp1a-201 protein_coding Ribo-seq
1 sORFs_org_Mouse
22163 219

GTG...

VNG...

GTG Intronic
sORF
Testis
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

17286 ENSMUST00000152894 Mybbp1a-205 retained_intron Ribo-seq
weak 1 sORFs_org_Mouse
651150 48

GTG...

VTS...

GTG Intronic
sORF
3T3, MEF, R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

17286 ENSMUST00000152894 Mybbp1a-205 retained_intron Ribo-seq
weak 3 sORFs_org_Mouse
1290514 60

ATA...

IRG...

ATA Intronic
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

445865 ENSMUST00000162048 Mybbp1a-208 retained_intron Ribo-seq
1 sORFs_org_Mouse
1290354 186

AAG...

KSP...

AAG Intronic
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

18856 ENSMUST00000156833 Mybbp1a-207 retained_intron Ribo-seq
moderate 1 sORFs_org_Mouse
1604026 132

ATG...

MER...

ATG Alternative
InCDS
Overlapping
sORF
MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

9458 ENSMUST00000045633 Mybbp1a-201 protein_coding Ribo-seq
3 sORFs_org_Mouse
1294420 126

ATT...

ISM...

ATT InCDS
Overlapping
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

9458 ENSMUST00000045633 Mybbp1a-201 protein_coding Ribo-seq
1 sORFs_org_Mouse
21247 87

TTG...

LAD...

TTG Intronic
sORF
B_cell, BMDC, Brain,
Neutrophil, Spleen_B_cell, 3T3,
E14, MEF, NSC,
R1E, Testis, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

445865 ENSMUST00000162048 Mybbp1a-208 retained_intron Ribo-seq
moderate 5 sORFs_org_Mouse
17286 ENSMUST00000152894 Mybbp1a-205 retained_intron Ribo-seq
9 sORFs_org_Mouse

Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5