Metam
ORF

Logo

Gene

Gene

ID CARD

ID

NCBI:14314

Aliases

AI316791
AW107808, ENSMUSG00000022816, Fstl
Fstl1, MGI:102793, NCBI:14314
OFF:Fstl1, TSC-36

Chromosome

16

Transcripts

100 ORFs
6 known transcripts
165 ORF to known transcript associations

MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

ORFs

Display all the transcripts related to the entry.

373699 ENSMUST00000135668 Fstl1-205 retained_intron
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

692021 60

CTG ...

LAG ...

Ribo-seq
CTG

6 sORFs_org_Mouse
    Intronic
    sORF
E14, MEF, NSC,
v6-5
421959 75

ATG ...

MCF ...

Ribo-seq
ATG

6 sORFs_org_Mouse
    Intronic
    sORF
E14, MEF, NSC,
v6-5
374680 54

ATG ...

MAG ...

Ribo-seq
ATG

4 sORFs_org_Mouse
    Intronic
    sORF
E14, MEF
35097 102

GTG ...

VFC ...

Ribo-seq
GTG

3 sORFs_org_Mouse
    Intronic
    sORF
MEF, v6-5
34101 63

GTG ...

VET ...

Ribo-seq
GTG

7 sORFs_org_Mouse
    Intronic
    sORF
Brain, E14, MEF,
NSC, v6-5
1146655 120

CTG ...

LCF ...

Ribo-seq
CTG

4 sORFs_org_Mouse
    Intronic
    sORF
MEF, v6-5
694911 63

TTG ...

LWS ...

Ribo-seq
TTG

moderate

1 sORFs_org_Mouse
    Intronic
    sORF
v6-5
694161 45

ATG ...

MCR ...

Ribo-seq
ATG

moderate

1 sORFs_org_Mouse
    Intronic
    sORF
v6-5
34683 66

GTG ...

VEL ...

Ribo-seq
GTG

6 sORFs_org_Mouse
    Intronic
    sORF
E14, MEF, NSC,
v6-5
695477 78

CTG ...

LRQ ...

Ribo-seq
CTG

moderate

3 sORFs_org_Mouse
    Intronic
    sORF
MEF, v6-5
692966 48

GTG ...

VPS ...

Ribo-seq
GTG

6 sORFs_org_Mouse
    Intronic
    sORF
E14, MEF, NSC,
v6-5
692875 36

ATG ...

MQT ...

Ribo-seq
ATG

moderate

1 sORFs_org_Mouse
    Intronic
    sORF
E14
12114 ENSMUST00000114763 Fstl1-201 protein_coding
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

12431 57

CTG ...

LRS ...

Ribo-seq
CTG

moderate

9 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Brain, E14,
MEF, R1E, Skin_tumor
12130 39

GTG ...

VCP ...

Ribo-seq
GTG

moderate

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, R1E, Skin_tumor
421796 87

ATC ...

IQD ...

Ribo-seq
ATC

weak

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
C2C12
696721 93

ATG ...

MRT ...

Ribo-seq
ATG

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Brain, MEF
694911 63

TTG ...

LWS ...

Ribo-seq
TTG

moderate

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Brain
12113 117

TTG ...

LSA ...

Ribo-seq
TTG

weak

8 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Brain, E14,
MEF, R1E, Skin_tumor
694161 45

ATG ...

MCR ...

Ribo-seq
ATG

moderate

3 sORFs_org_Mouse
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Brain, Glioma,
Liver, MEF, MESC
376248 246

ATG ...

MQI ...

Ribo-seq
ATG

9 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Brain, E14,
MEF, v6-5
374680 54

ATG ...

MAG ...

Ribo-seq
ATG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain
378603 273

ATG ...

MKQ ...

Ribo-seq
ATG

10 sORFs_org_Mouse
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Brain, E14,
Glioma, Liver, MEF,
MESC
697380 84

CTG ...

LTG ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Brain
371932 60

CTG ...

LRW ...

Ribo-seq
CTG

moderate

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Brain, MEF
371709 36

ATG ...

MAT ...

Ribo-seq
ATG

strong

2 sORFs_org_Mouse
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Glioma, Liver,
MEF, MESC
1624766 141

TTG ...

LQD ...

Ribo-seq
TTG

3 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
MEF
693197 105

TTG ...

LNC ...

Ribo-seq
TTG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Brain
12303 78

ATG ...

MQM ...

Ribo-seq
ATG

weak

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Brain, Skin_tumor
697533 117

TTG ...

LTP ...

Ribo-seq
TTG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Brain
12160 57

CTG ...

LQS ...

Ribo-seq
CTG

moderate

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Skin_tumor
369361 36

CTG ...

LWP ...

Ribo-seq
CTG

weak

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
34683 66

GTG ...

VEL ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
692966 48

GTG ...

VPS ...

Ribo-seq
GTG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Brain
1189100 237

AGG ...

RRT ...

Ribo-seq
AGG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
375266 48

CTG ...

LCL ...

Ribo-seq
CTG

weak

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, MEF
373941 66

CTG ...

LRL ...

Ribo-seq
CTG

moderate

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Brain
692021 60

CTG ...

LAG ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
421959 75

ATG ...

MCF ...

Ribo-seq
ATG

5 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Brain, C2C12,
E14, MEF
34101 63

GTG ...

VET ...

Ribo-seq
GTG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain
12354 93

ATG ...

MSS ...

Ribo-seq
ATG

moderate

10 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Brain, E14,
MEF, R1E, Skin_tumor,
v6-5
698115 30

GTG ...

VPQ ...

Ribo-seq
GTG

weak

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Brain
12322 30

ATG ...

MSR ...

Ribo-seq
ATG

4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, R1E, Skin_tumor,
Testis
1189230 108

ACG ...

TLP ...

Ribo-seq
ACG

1 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
E14
696248 96

CTG ...

LMR ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Brain
695477 78

CTG ...

LRQ ...

Ribo-seq
CTG

moderate

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Brain
12158 42

ATG ...

MAG ...

Ribo-seq
ATG

moderate

9 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Brain, E14,
MEF, R1E, Skin_tumor,
v6-5
369769 42

CTG ...

LFL ...

Ribo-seq
CTG

weak

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
421952 57

ACG ...

TMA ...

Ribo-seq
ACG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, MEF
421910 78

ACG ...

TLP ...

Ribo-seq
ACG

1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
E14
374872 72

ATG ...

MEL ...

Ribo-seq
ATG

moderate

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Brain
1624213 132

TTG ...

LAV ...

Ribo-seq
TTG

3 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
MEF
692975 60

CTG ...

LET ...

Ribo-seq
CTG

moderate

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Brain
375241 42

TTG ...

LIM ...

Ribo-seq
TTG

moderate

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, R1E
12229 99

GTG ...

VPW ...

Ribo-seq
GTG

moderate

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Brain, Skin_tumor
1187484 93

AAG ...

KQI ...

Ribo-seq
AAG

weak

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
374978 39

GTG ...

VSV ...

Ribo-seq
GTG

moderate

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Brain
694337 120

GTG ...

VLT ...

Ribo-seq
GTG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Brain
693557 30

CTG ...

LPH ...

Ribo-seq
CTG

weak

5 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Brain, MEF,
R1E, v6-5
692875 36

ATG ...

MQT ...

Ribo-seq
ATG

moderate

4 sORFs_org_Mouse
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Brain, Glioma,
Liver, MEF, MESC
1624963 150

ATG ...

MTR ...

Ribo-seq
ATG

4 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
MEF
12577 54

ATG ...

MSR ...

Ribo-seq
ATG

11 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Brain, E14,
MEF, R1E, Skin_tumor,
Testis, v6-5
33366 ENSMUST00000127495 Fstl1-204 processed_transcript
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

373941 66

CTG ...

LRL ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    ncRNA
    sORF
Brain
373108 114

ATG ...

MVQ ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    ncRNA
    sORF
Brain
34227 81

CTG ...

LKF ...

Ribo-seq
CTG

3 sORFs_org_Mouse
    ncRNA
    sORF
Brain, Liver, Testis
33365 144

CTG ...

LED ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    ncRNA
    sORF
Brain, Testis
367829 126

TTG ...

LPL ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    ncRNA
    sORF
Brain
375266 48

CTG ...

LCL ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    ncRNA
    sORF
Brain
371932 60

CTG ...

LRW ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    ncRNA
    sORF
Brain
374872 72

ATG ...

MEL ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    ncRNA
    sORF
Brain
368888 123

CTG ...

LQL ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    ncRNA
    sORF
Brain, MEF
375241 42

TTG ...

LIM ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    ncRNA
    sORF
Brain
12160 57

CTG ...

LQS ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    ncRNA
    sORF
Brain
12229 99

GTG ...

VPW ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    ncRNA
    sORF
Brain
35097 102

GTG ...

VFC ...

Ribo-seq
GTG

2 sORFs_org_Mouse
    ncRNA
    sORF
Brain, Testis
33481 99

CTG ...

LDS ...

Ribo-seq
CTG

3 sORFs_org_Mouse
    ncRNA
    sORF
Brain, Liver, Testis
34683 66

GTG ...

VEL ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    ncRNA
    sORF
Testis
12322 30

ATG ...

MSR ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    ncRNA
    sORF
Brain
12158 42

ATG ...

MAG ...

Ribo-seq
ATG

3 sORFs_org_Mouse
    ncRNA
    sORF
Brain, MEF, Testis
12431 57

CTG ...

LRS ...

Ribo-seq
CTG

3 sORFs_org_Mouse
    ncRNA
    sORF
Brain, MEF, v6-5
33963 144

GTG ...

VCG ...

Ribo-seq
GTG

5 sORFs_org_Mouse
    ncRNA
    sORF
Brain, MEF, Testis
372917 120

TTG ...

LFM ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    ncRNA
    sORF
Brain
371709 36

ATG ...

MAT ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    ncRNA
    sORF
Brain
374978 39

GTG ...

VSV ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    ncRNA
    sORF
Brain
12354 93

ATG ...

MSS ...

Ribo-seq
ATG

3 sORFs_org_Mouse
    ncRNA
    sORF
Brain, MEF, Testis
33872 72

GTG ...

VEQ ...

Ribo-seq
GTG

3 sORFs_org_Mouse
    ncRNA
    sORF
Brain, Liver, Testis
373284 129

CTG ...

LLP ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    ncRNA
    sORF
Brain
34064 105

GTG ...

VDC ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    ncRNA
    sORF
Testis
12303 78

ATG ...

MQM ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    ncRNA
    sORF
Brain
12113 117

TTG ...

LSA ...

Ribo-seq
TTG

3 sORFs_org_Mouse
    ncRNA
    sORF
Brain, MEF, v6-5
34606 87

TTG ...

LQE ...

Ribo-seq
TTG

2 sORFs_org_Mouse
    ncRNA
    sORF
Brain, Testis
34700 147

CTG ...

LEA ...

Ribo-seq
CTG

3 sORFs_org_Mouse
    ncRNA
    sORF
Brain, MEF, Testis
35710 ENSMUST00000123077 Fstl1-202 processed_transcript
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

12130 39

GTG ...

VCP ...

Ribo-seq
GTG

6 sORFs_org_Mouse
    ncRNA
    sORF
E14, MEF, v6-5
367829 126

TTG ...

LPL ...

Ribo-seq
TTG

5 sORFs_org_Mouse
    ncRNA
    sORF
MEF, v6-5
372917 120

TTG ...

LFM ...

Ribo-seq
TTG

5 sORFs_org_Mouse
    ncRNA
    sORF
MEF, v6-5
1186582 45

ATC ...

IAV ...

Ribo-seq
ATC

1 sORFs_org_Mouse
    ncRNA
    sORF
E14
33365 144

CTG ...

LED ...

Ribo-seq
CTG

7 sORFs_org_Mouse
    ncRNA
    sORF
Brain, E14, MEF,
v6-5
692975 60

CTG ...

LET ...

Ribo-seq
CTG

6 sORFs_org_Mouse
    ncRNA
    sORF
E14, MEF, v6-5
698115 30

GTG ...

VPQ ...

Ribo-seq
GTG

5 sORFs_org_Mouse
    ncRNA
    sORF
E14, MEF, v6-5
12303 78

ATG ...

MQM ...

Ribo-seq
ATG

5 sORFs_org_Mouse
    ncRNA
    sORF
MEF, v6-5
1716318 150

CTG ...

LKF ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    ncRNA
    sORF
MEF
1187138 33

AAG ...

KTK ...

Ribo-seq
AAG

1 sORFs_org_Mouse
    ncRNA
    sORF
E14
697533 117

TTG ...

LTP ...

Ribo-seq
TTG

6 sORFs_org_Mouse
    ncRNA
    sORF
E14, MEF, v6-5
1146246 156

ATG ...

MAF ...

Ribo-seq
ATG

4 sORFs_org_Mouse
    ncRNA
    sORF
E14, MEF, v6-5
1147883 144

CTG ...

LCF ...

Ribo-seq
CTG

5 sORFs_org_Mouse
    ncRNA
    sORF
E14, MEF, v6-5
371709 36

ATG ...

MAT ...

Ribo-seq
ATG

strong

7 sORFs_org_Mouse
    ncRNA
    sORF
Brain, E14, MEF,
v6-5
33481 99

CTG ...

LDS ...

Ribo-seq
CTG

8 sORFs_org_Mouse
    ncRNA
    sORF
Brain, E14, MEF,
v6-5
375241 42

TTG ...

LIM ...

Ribo-seq
TTG

moderate

7 sORFs_org_Mouse
    ncRNA
    sORF
Brain, E14, MEF,
v6-5
1621478 213

GTG ...

VSV ...

Ribo-seq
GTG

3 sORFs_org_Mouse
    ncRNA
    sORF
MEF
34606 87

TTG ...

LQE ...

Ribo-seq
TTG

5 sORFs_org_Mouse
    ncRNA
    sORF
E14, MEF, v6-5
369769 42

CTG ...

LFL ...

Ribo-seq
CTG

6 sORFs_org_Mouse
    ncRNA
    sORF
Brain, E14, MEF,
v6-5
369361 36

CTG ...

LWP ...

Ribo-seq
CTG

6 sORFs_org_Mouse
    ncRNA
    sORF
Brain, E14, MEF,
v6-5
374978 39

GTG ...

VSV ...

Ribo-seq
GTG

6 sORFs_org_Mouse
    ncRNA
    sORF
E14, MEF, v6-5
1187739 195

AAG ...

KNQ ...

Ribo-seq
AAG

1 sORFs_org_Mouse
    ncRNA
    sORF
E14
1714428 225

CTG ...

LGL ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    ncRNA
    sORF
MEF
1189119 96

ATG ...

MKQ ...

Ribo-seq
ATG

3 sORFs_org_Mouse
    ncRNA
    sORF
E14, MEF
373284 129

CTG ...

LLP ...

Ribo-seq
CTG

5 sORFs_org_Mouse
    ncRNA
    sORF
MEF, v6-5
373941 66

CTG ...

LRL ...

Ribo-seq
CTG

6 sORFs_org_Mouse
    ncRNA
    sORF
E14, MEF, v6-5
33872 72

GTG ...

VEQ ...

Ribo-seq
GTG

6 sORFs_org_Mouse
    ncRNA
    sORF
Brain, E14, MEF,
v6-5
1185921 63

AAG ...

KSS ...

Ribo-seq
AAG

1 sORFs_org_Mouse
    ncRNA
    sORF
E14
1356736 162

TTG ...

LLM ...

Ribo-seq
TTG

4 sORFs_org_Mouse
    ncRNA
    sORF
E14, MEF
375266 48

CTG ...

LCL ...

Ribo-seq
CTG

6 sORFs_org_Mouse
    ncRNA
    sORF
E14, MEF, v6-5
1186704 252

AGG ...

RIC ...

Ribo-seq
AGG

1 sORFs_org_Mouse
    ncRNA
    sORF
E14
1621494 201

CTG ...

LML ...

Ribo-seq
CTG

3 sORFs_org_Mouse
    ncRNA
    sORF
MEF
12229 99

GTG ...

VPW ...

Ribo-seq
GTG

5 sORFs_org_Mouse
    ncRNA
    sORF
MEF, v6-5
1623263 207

GTG ...

VSL ...

Ribo-seq
GTG

3 sORFs_org_Mouse
    ncRNA
    sORF
MEF
696721 93

ATG ...

MRT ...

Ribo-seq
ATG

6 sORFs_org_Mouse
    ncRNA
    sORF
E14, MEF, v6-5
1676890 66

TTG ...

LGR ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    ncRNA
    sORF
MEF
1187140 90

ATC ...

ILD ...

Ribo-seq
ATC

1 sORFs_org_Mouse
    ncRNA
    sORF
E14
34064 105

GTG ...

VDC ...

Ribo-seq
GTG

4 sORFs_org_Mouse
    ncRNA
    sORF
Brain, E14, MEF
35709 168

CTG ...

LDS ...

Ribo-seq
CTG

4 sORFs_org_Mouse
    ncRNA
    sORF
E14, MEF, Testis
1676703 138

ATG ...

MSQ ...

Ribo-seq
ATG

2 sORFs_org_Mouse
    ncRNA
    sORF
MEF
1186378 156

AAG ...

KTG ...

Ribo-seq
AAG

1 sORFs_org_Mouse
    ncRNA
    sORF
E14
1676931 198

CTG ...

LRK ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    ncRNA
    sORF
MEF
1187429 87

ACG ...

TKP ...

Ribo-seq
ACG

1 sORFs_org_Mouse
    ncRNA
    sORF
E14
696248 96

CTG ...

LMR ...

Ribo-seq
CTG

6 sORFs_org_Mouse
    ncRNA
    sORF
E14, MEF, v6-5
693197 105

TTG ...

LNC ...

Ribo-seq
TTG

6 sORFs_org_Mouse
    ncRNA
    sORF
E14, MEF, v6-5
371932 60

CTG ...

LRW ...

Ribo-seq
CTG

5 sORFs_org_Mouse
    ncRNA
    sORF
E14, MEF, v6-5
34227 81

CTG ...

LKF ...

Ribo-seq
CTG

6 sORFs_org_Mouse
    ncRNA
    sORF
Brain, E14, MEF,
v6-5
1622145 198

ATG ...

MLA ...

Ribo-seq
ATG

3 sORFs_org_Mouse
    ncRNA
    sORF
MEF
12160 57

CTG ...

LQS ...

Ribo-seq
CTG

6 sORFs_org_Mouse
    ncRNA
    sORF
E14, MEF, v6-5
12322 30

ATG ...

MSR ...

Ribo-seq
ATG

6 sORFs_org_Mouse
    ncRNA
    sORF
Brain, E14, MEF,
v6-5
1186106 207

ATG ...

MKQ ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    ncRNA
    sORF
E14
1676613 30

TTG ...

LLT ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    ncRNA
    sORF
MEF
1716025 141

GTG ...

VEQ ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    ncRNA
    sORF
MEF
1146790 159

CTG ...

LMA ...

Ribo-seq
CTG

5 sORFs_org_Mouse
    ncRNA
    sORF
E14, MEF, v6-5
1002927 168

CTG ...

LSD ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    ncRNA
    sORF
Brain, E14
694337 120

GTG ...

VLT ...

Ribo-seq
GTG

6 sORFs_org_Mouse
    ncRNA
    sORF
E14, MEF, v6-5
1189627 213

ATC ...

ILD ...

Ribo-seq
ATC

1 sORFs_org_Mouse
    ncRNA
    sORF
E14
374872 72

ATG ...

MEL ...

Ribo-seq
ATG

5 sORFs_org_Mouse
    ncRNA
    sORF
MEF, v6-5
697380 84

CTG ...

LTG ...

Ribo-seq
CTG

8 sORFs_org_Mouse
    ncRNA
    sORF
BMDC, E14, MEF,
v6-5
373108 114

ATG ...

MVQ ...

Ribo-seq
ATG

5 sORFs_org_Mouse
    ncRNA
    sORF
MEF, v6-5
374681 ENSMUST00000152579 Fstl1-206 processed_transcript
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

374680 54

ATG ...

MAG ...

Ribo-seq
ATG

3 sORFs_org_Mouse
    ncRNA
    sORF
3T3, Brain, MEF
34101 63

GTG ...

VET ...

Ribo-seq
GTG

3 sORFs_org_Mouse
    ncRNA
    sORF
3T3, MEF
1189045 123

ACG ...

TMA ...

Ribo-seq
ACG

1 sORFs_org_Mouse
    ncRNA
    sORF
E14
1189323 279

CTG ...

LPP ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    ncRNA
    sORF
E14
34102 ENSMUST00000125279 Fstl1-203 processed_transcript
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

374680 54

ATG ...

MAG ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    ncRNA
    sORF
R1E
421995 78

ACG ...

TMA ...

Ribo-seq
ACG

1 sORFs_org_Mouse
    ncRNA
    sORF
C2C12
422023 195

CTG ...

LPP ...

Ribo-seq
CTG

4 sORFs_org_Mouse
    ncRNA
    sORF
C2C12, E14, MEF
421961 144

CTG ...

LPP ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    ncRNA
    sORF
C2C12
34101 63

GTG ...

VET ...

Ribo-seq
GTG

3 sORFs_org_Mouse
    ncRNA
    sORF
C2C12, R1E, Testis
422003 84

GTG ...

VET ...

Ribo-seq
GTG

3 sORFs_org_Mouse
    ncRNA
    sORF
3T3, C2C12, MEF
421910 78

ACG ...

TLP ...

Ribo-seq
ACG

1 sORFs_org_Mouse
    ncRNA
    sORF
C2C12
1716229 177

GTG ...

VSS ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    ncRNA
    sORF
MEF
699675 75

ATG ...

MAG ...

Ribo-seq
ATG

2 sORFs_org_Mouse
    ncRNA
    sORF
3T3, MEF
421952 57

ACG ...

TMA ...

Ribo-seq
ACG

1 sORFs_org_Mouse
    ncRNA
    sORF
C2C12
3036855 UNKNOWN_TRANSCRIPT
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

378603 273

ATG ...

MKQ ...

Predicted
ATG

1 Samandi2017
    sORF

ORFs

100 ORFs
6 known transcripts
165 ORF to known transcript associations

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF Length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Start codon

The start codon sequence of the ORF.

ORF annotations

A comma-separated list of all the annotations computed by our algorithm for the ORF. This list includes the annotations computed for the ORF for all transcripts. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of all the cell types in which the ORF has already been identified.

Transcripts

Display all the transcripts related to the entry.

692021 60

CTG...

LAG...

CTG Intronic
sORF
Alternative
InCDS
Overlapping
E14, MEF, NSC,
v6-5, 3T3
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

373699 ENSMUST00000135668 Fstl1-205 retained_intron Ribo-seq
6 sORFs_org_Mouse
12114 ENSMUST00000114763 Fstl1-201 protein_coding Ribo-seq
1 sORFs_org_Mouse
12431 57

CTG...

LRS...

CTG Alternative
InCDS
Overlapping
sORF
ncRNA
3T3, Brain, E14,
MEF, R1E, Skin_tumor,
v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

12114 ENSMUST00000114763 Fstl1-201 protein_coding Ribo-seq
moderate 9 sORFs_org_Mouse
33366 ENSMUST00000127495 Fstl1-204 processed_transcript Ribo-seq
3 sORFs_org_Mouse
12130 39

GTG...

VCP...

GTG Alternative
InCDS
Overlapping
sORF
ncRNA
3T3, R1E, Skin_tumor,
E14, MEF, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

12114 ENSMUST00000114763 Fstl1-201 protein_coding Ribo-seq
moderate 3 sORFs_org_Mouse
35710 ENSMUST00000123077 Fstl1-202 processed_transcript Ribo-seq
6 sORFs_org_Mouse
421796 87

ATC...

IQD...

ATC Alternative
InCDS
Overlapping
sORF
C2C12
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

12114 ENSMUST00000114763 Fstl1-201 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
373941 66

CTG...

LRL...

CTG ncRNA
sORF
Alternative
InCDS
Overlapping
Brain, E14, MEF,
v6-5, 3T3
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

33366 ENSMUST00000127495 Fstl1-204 processed_transcript Ribo-seq
1 sORFs_org_Mouse
35710 ENSMUST00000123077 Fstl1-202 processed_transcript Ribo-seq
6 sORFs_org_Mouse
12114 ENSMUST00000114763 Fstl1-201 protein_coding Ribo-seq
moderate 2 sORFs_org_Mouse
367829 126

TTG...

LPL...

TTG ncRNA
sORF
MEF, v6-5, Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

35710 ENSMUST00000123077 Fstl1-202 processed_transcript Ribo-seq
5 sORFs_org_Mouse
33366 ENSMUST00000127495 Fstl1-204 processed_transcript Ribo-seq
1 sORFs_org_Mouse
374680 54

ATG...

MAG...

ATG ncRNA
sORF
Alternative
InCDS
Overlapping
Intronic
3T3, Brain, MEF,
R1E, E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

374681 ENSMUST00000152579 Fstl1-206 processed_transcript Ribo-seq
3 sORFs_org_Mouse
12114 ENSMUST00000114763 Fstl1-201 protein_coding Ribo-seq
2 sORFs_org_Mouse
34102 ENSMUST00000125279 Fstl1-203 processed_transcript Ribo-seq
1 sORFs_org_Mouse
373699 ENSMUST00000135668 Fstl1-205 retained_intron Ribo-seq
4 sORFs_org_Mouse
372917 120

TTG...

LFM...

TTG ncRNA
sORF
MEF, v6-5, Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

35710 ENSMUST00000123077 Fstl1-202 processed_transcript Ribo-seq
5 sORFs_org_Mouse
33366 ENSMUST00000127495 Fstl1-204 processed_transcript Ribo-seq
1 sORFs_org_Mouse
696721 93

ATG...

MRT...

ATG Alternative
InCDS
Overlapping
sORF
ncRNA
3T3, Brain, MEF,
E14, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

12114 ENSMUST00000114763 Fstl1-201 protein_coding Ribo-seq
3 sORFs_org_Mouse
35710 ENSMUST00000123077 Fstl1-202 processed_transcript Ribo-seq
6 sORFs_org_Mouse
694911 63

TTG...

LWS...

TTG Alternative
InCDS
Overlapping
sORF
Intronic
3T3, Brain, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

12114 ENSMUST00000114763 Fstl1-201 protein_coding Ribo-seq
moderate 2 sORFs_org_Mouse
373699 ENSMUST00000135668 Fstl1-205 retained_intron Ribo-seq
moderate 1 sORFs_org_Mouse
1186582 45

ATC...

IAV...

ATC ncRNA
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

35710 ENSMUST00000123077 Fstl1-202 processed_transcript Ribo-seq
1 sORFs_org_Mouse
12113 117

TTG...

LSA...

TTG Alternative
InCDS
Overlapping
sORF
ncRNA
3T3, Brain, E14,
MEF, R1E, Skin_tumor,
v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

12114 ENSMUST00000114763 Fstl1-201 protein_coding Ribo-seq
weak 8 sORFs_org_Mouse
33366 ENSMUST00000127495 Fstl1-204 processed_transcript Ribo-seq
3 sORFs_org_Mouse
694161 45

ATG...

MCR...

ATG Alternative
InCDS
Overlapping
sORF
Intronic
3T3, Brain, Glioma,
Liver, MEF, MESC,
v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

12114 ENSMUST00000114763 Fstl1-201 protein_coding Ribo-seq
moderate 3 sORFs_org_Mouse
Johnstone2016
373699 ENSMUST00000135668 Fstl1-205 retained_intron Ribo-seq
moderate 1 sORFs_org_Mouse
376248 246

ATG...

MQI...

ATG Alternative
InCDS
Overlapping
sORF
3T3, Brain, E14,
MEF, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

12114 ENSMUST00000114763 Fstl1-201 protein_coding Ribo-seq
9 sORFs_org_Mouse
33365 144

CTG...

LED...

CTG ncRNA
sORF
Brain, E14, MEF,
v6-5, Testis
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

35710 ENSMUST00000123077 Fstl1-202 processed_transcript Ribo-seq
7 sORFs_org_Mouse
33366 ENSMUST00000127495 Fstl1-204 processed_transcript Ribo-seq
2 sORFs_org_Mouse
692975 60

CTG...

LET...

CTG ncRNA
sORF
Alternative
InCDS
Overlapping
E14, MEF, v6-5,
3T3, Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

35710 ENSMUST00000123077 Fstl1-202 processed_transcript Ribo-seq
6 sORFs_org_Mouse
12114 ENSMUST00000114763 Fstl1-201 protein_coding Ribo-seq
moderate 2 sORFs_org_Mouse
698115 30

GTG...

VPQ...

GTG ncRNA
sORF
Alternative
InCDS
Overlapping
E14, MEF, v6-5,
3T3, Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

35710 ENSMUST00000123077 Fstl1-202 processed_transcript Ribo-seq
5 sORFs_org_Mouse
12114 ENSMUST00000114763 Fstl1-201 protein_coding Ribo-seq
weak 2 sORFs_org_Mouse
373108 114

ATG...

MVQ...

ATG ncRNA
sORF
Brain, MEF, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

33366 ENSMUST00000127495 Fstl1-204 processed_transcript Ribo-seq
1 sORFs_org_Mouse
35710 ENSMUST00000123077 Fstl1-202 processed_transcript Ribo-seq
5 sORFs_org_Mouse
34227 81

CTG...

LKF...

CTG ncRNA
sORF
Brain, Liver, Testis,
E14, MEF, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

33366 ENSMUST00000127495 Fstl1-204 processed_transcript Ribo-seq
3 sORFs_org_Mouse
35710 ENSMUST00000123077 Fstl1-202 processed_transcript Ribo-seq
6 sORFs_org_Mouse
421959 75

ATG...

MCF...

ATG Intronic
sORF
Alternative
InCDS
Overlapping
E14, MEF, NSC,
v6-5, 3T3, Brain,
C2C12
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

373699 ENSMUST00000135668 Fstl1-205 retained_intron Ribo-seq
6 sORFs_org_Mouse
12114 ENSMUST00000114763 Fstl1-201 protein_coding Ribo-seq
5 sORFs_org_Mouse
12303 78

ATG...

MQM...

ATG ncRNA
sORF
Alternative
InCDS
Overlapping
MEF, v6-5, 3T3,
Brain, Skin_tumor
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

35710 ENSMUST00000123077 Fstl1-202 processed_transcript Ribo-seq
5 sORFs_org_Mouse
12114 ENSMUST00000114763 Fstl1-201 protein_coding Ribo-seq
weak 3 sORFs_org_Mouse
33366 ENSMUST00000127495 Fstl1-204 processed_transcript Ribo-seq
1 sORFs_org_Mouse
1716318 150

CTG...

LKF...

CTG ncRNA
sORF
MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

35710 ENSMUST00000123077 Fstl1-202 processed_transcript Ribo-seq
1 sORFs_org_Mouse
378603 273

ATG...

MKQ...

ATG Alternative
InCDS
Overlapping
sORF
3T3, Brain, E14,
Glioma, Liver, MEF,
MESC,
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

12114 ENSMUST00000114763 Fstl1-201 protein_coding Ribo-seq
10 sORFs_org_Mouse
Johnstone2016
3036855 UNKNOWN_TRANSCRIPT Predicted
1 Samandi2017
697380 84

CTG...

LTG...

CTG Alternative
InCDS
Overlapping
sORF
ncRNA
3T3, Brain, BMDC,
E14, MEF, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

12114 ENSMUST00000114763 Fstl1-201 protein_coding Ribo-seq
2 sORFs_org_Mouse
35710 ENSMUST00000123077 Fstl1-202 processed_transcript Ribo-seq
8 sORFs_org_Mouse
1187138 33

AAG...

KTK...

AAG ncRNA
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

35710 ENSMUST00000123077 Fstl1-202 processed_transcript Ribo-seq
1 sORFs_org_Mouse
371932 60

CTG...

LRW...

CTG Alternative
InCDS
Overlapping
sORF
ncRNA
3T3, Brain, MEF,
E14, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

12114 ENSMUST00000114763 Fstl1-201 protein_coding Ribo-seq
moderate 3 sORFs_org_Mouse
33366 ENSMUST00000127495 Fstl1-204 processed_transcript Ribo-seq
1 sORFs_org_Mouse
35710 ENSMUST00000123077 Fstl1-202 processed_transcript Ribo-seq
5 sORFs_org_Mouse
697533 117

TTG...

LTP...

TTG ncRNA
sORF
Alternative
InCDS
Overlapping
E14, MEF, v6-5,
3T3, Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

35710 ENSMUST00000123077 Fstl1-202 processed_transcript Ribo-seq
6 sORFs_org_Mouse
12114 ENSMUST00000114763 Fstl1-201 protein_coding Ribo-seq
2 sORFs_org_Mouse
371709 36

ATG...

MAT...

ATG Alternative
InCDS
Overlapping
sORF
ncRNA
3T3, Glioma, Liver,
MEF, MESC, Brain,
E14, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

12114 ENSMUST00000114763 Fstl1-201 protein_coding Ribo-seq
strong 2 sORFs_org_Mouse
Johnstone2016
35710 ENSMUST00000123077 Fstl1-202 processed_transcript Ribo-seq
strong 7 sORFs_org_Mouse
33366 ENSMUST00000127495 Fstl1-204 processed_transcript Ribo-seq
1 sORFs_org_Mouse
375266 48

CTG...

LCL...

CTG ncRNA
sORF
Alternative
InCDS
Overlapping
Brain, 3T3, MEF,
E14, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

33366 ENSMUST00000127495 Fstl1-204 processed_transcript Ribo-seq
1 sORFs_org_Mouse
12114 ENSMUST00000114763 Fstl1-201 protein_coding Ribo-seq
weak 2 sORFs_org_Mouse
35710 ENSMUST00000123077 Fstl1-202 processed_transcript Ribo-seq
6 sORFs_org_Mouse
1146246 156

ATG...

MAF...

ATG ncRNA
sORF
E14, MEF, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

35710 ENSMUST00000123077 Fstl1-202 processed_transcript Ribo-seq
4 sORFs_org_Mouse
374872 72

ATG...

MEL...

ATG ncRNA
sORF
Alternative
InCDS
Overlapping
Brain, 3T3, MEF,
v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

33366 ENSMUST00000127495 Fstl1-204 processed_transcript Ribo-seq
1 sORFs_org_Mouse
12114 ENSMUST00000114763 Fstl1-201 protein_coding Ribo-seq
moderate 2 sORFs_org_Mouse
35710 ENSMUST00000123077 Fstl1-202 processed_transcript Ribo-seq
5 sORFs_org_Mouse
421995 78

ACG...

TMA...

ACG ncRNA
sORF
C2C12
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

34102 ENSMUST00000125279 Fstl1-203 processed_transcript Ribo-seq
1 sORFs_org_Mouse
1147883 144

CTG...

LCF...

CTG ncRNA
sORF
E14, MEF, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

35710 ENSMUST00000123077 Fstl1-202 processed_transcript Ribo-seq
5 sORFs_org_Mouse
422023 195

CTG...

LPP...

CTG ncRNA
sORF
C2C12, E14, MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

34102 ENSMUST00000125279 Fstl1-203 processed_transcript Ribo-seq
4 sORFs_org_Mouse
1624766 141

TTG...

LQD...

TTG InCDS
Overlapping
sORF
MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

12114 ENSMUST00000114763 Fstl1-201 protein_coding Ribo-seq
3 sORFs_org_Mouse
33481 99

CTG...

LDS...

CTG ncRNA
sORF
Brain, E14, MEF,
v6-5, Liver, Testis
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

35710 ENSMUST00000123077 Fstl1-202 processed_transcript Ribo-seq
8 sORFs_org_Mouse
33366 ENSMUST00000127495 Fstl1-204 processed_transcript Ribo-seq
3 sORFs_org_Mouse
375241 42

TTG...

LIM...

TTG ncRNA
sORF
Alternative
InCDS
Overlapping
Brain, E14, MEF,
v6-5, 3T3, R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

35710 ENSMUST00000123077 Fstl1-202 processed_transcript Ribo-seq
moderate 7 sORFs_org_Mouse
33366 ENSMUST00000127495 Fstl1-204 processed_transcript Ribo-seq
1 sORFs_org_Mouse
12114 ENSMUST00000114763 Fstl1-201 protein_coding Ribo-seq
moderate 2 sORFs_org_Mouse
1621478 213

GTG...

VSV...

GTG ncRNA
sORF
MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

35710 ENSMUST00000123077 Fstl1-202 processed_transcript Ribo-seq
3 sORFs_org_Mouse
368888 123

CTG...

LQL...

CTG ncRNA
sORF
Brain, MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

33366 ENSMUST00000127495 Fstl1-204 processed_transcript Ribo-seq
2 sORFs_org_Mouse
12160 57

CTG...

LQS...

CTG ncRNA
sORF
Alternative
InCDS
Overlapping
Brain, 3T3, Skin_tumor,
E14, MEF, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

33366 ENSMUST00000127495 Fstl1-204 processed_transcript Ribo-seq
1 sORFs_org_Mouse
12114 ENSMUST00000114763 Fstl1-201 protein_coding Ribo-seq
moderate 2 sORFs_org_Mouse
35710 ENSMUST00000123077 Fstl1-202 processed_transcript Ribo-seq
6 sORFs_org_Mouse
693197 105

TTG...

LNC...

TTG Alternative
InCDS
Overlapping
sORF
ncRNA
3T3, Brain, E14,
MEF, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

12114 ENSMUST00000114763 Fstl1-201 protein_coding Ribo-seq
2 sORFs_org_Mouse
35710 ENSMUST00000123077 Fstl1-202 processed_transcript Ribo-seq
6 sORFs_org_Mouse
34101 63

GTG...

VET...

GTG ncRNA
sORF
Intronic
Alternative
InCDS
Overlapping
3T3, MEF, C2C12,
R1E, Testis, Brain,
E14, NSC, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

374681 ENSMUST00000152579 Fstl1-206 processed_transcript Ribo-seq
3 sORFs_org_Mouse
34102 ENSMUST00000125279 Fstl1-203 processed_transcript Ribo-seq
3 sORFs_org_Mouse
373699 ENSMUST00000135668 Fstl1-205 retained_intron Ribo-seq
7 sORFs_org_Mouse
12114 ENSMUST00000114763 Fstl1-201 protein_coding Ribo-seq
2 sORFs_org_Mouse
421961 144

CTG...

LPP...

CTG ncRNA
sORF
C2C12
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

34102 ENSMUST00000125279 Fstl1-203 processed_transcript Ribo-seq
1 sORFs_org_Mouse
34606 87

TTG...

LQE...

TTG ncRNA
sORF
E14, MEF, v6-5,
Brain, Testis
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

35710 ENSMUST00000123077 Fstl1-202 processed_transcript Ribo-seq
5 sORFs_org_Mouse
33366 ENSMUST00000127495 Fstl1-204 processed_transcript Ribo-seq
2 sORFs_org_Mouse
12229 99

GTG...

VPW...

GTG ncRNA
sORF
Alternative
InCDS
Overlapping
Brain, MEF, v6-5,
3T3, Skin_tumor
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

33366 ENSMUST00000127495 Fstl1-204 processed_transcript Ribo-seq
1 sORFs_org_Mouse
35710 ENSMUST00000123077 Fstl1-202 processed_transcript Ribo-seq
5 sORFs_org_Mouse
12114 ENSMUST00000114763 Fstl1-201 protein_coding Ribo-seq
moderate 3 sORFs_org_Mouse
35097 102

GTG...

VFC...

GTG ncRNA
sORF
Intronic
Brain, Testis, MEF,
v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

33366 ENSMUST00000127495 Fstl1-204 processed_transcript Ribo-seq
2 sORFs_org_Mouse
373699 ENSMUST00000135668 Fstl1-205 retained_intron Ribo-seq
3 sORFs_org_Mouse
369361 36

CTG...

LWP...

CTG Alternative
InCDS
Overlapping
sORF
ncRNA
3T3, Brain, E14,
MEF, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

12114 ENSMUST00000114763 Fstl1-201 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
35710 ENSMUST00000123077 Fstl1-202 processed_transcript Ribo-seq
6 sORFs_org_Mouse
34683 66

GTG...

VEL...

GTG Alternative
InCDS
Overlapping
sORF
ncRNA
Intronic
3T3, Testis, E14,
MEF, NSC, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

12114 ENSMUST00000114763 Fstl1-201 protein_coding Ribo-seq
1 sORFs_org_Mouse
33366 ENSMUST00000127495 Fstl1-204 processed_transcript Ribo-seq
1 sORFs_org_Mouse
373699 ENSMUST00000135668 Fstl1-205 retained_intron Ribo-seq
6 sORFs_org_Mouse
692966 48

GTG...

VPS...

GTG Alternative
InCDS
Overlapping
sORF
Intronic
3T3, Brain, E14,
MEF, NSC, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

12114 ENSMUST00000114763 Fstl1-201 protein_coding Ribo-seq
2 sORFs_org_Mouse
373699 ENSMUST00000135668 Fstl1-205 retained_intron Ribo-seq
6 sORFs_org_Mouse
369769 42

CTG...

LFL...

CTG ncRNA
sORF
Alternative
InCDS
Overlapping
Brain, E14, MEF,
v6-5, 3T3
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

35710 ENSMUST00000123077 Fstl1-202 processed_transcript Ribo-seq
6 sORFs_org_Mouse
12114 ENSMUST00000114763 Fstl1-201 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
374978 39

GTG...

VSV...

GTG ncRNA
sORF
Alternative
InCDS
Overlapping
E14, MEF, v6-5,
Brain, 3T3
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

35710 ENSMUST00000123077 Fstl1-202 processed_transcript Ribo-seq
6 sORFs_org_Mouse
33366 ENSMUST00000127495 Fstl1-204 processed_transcript Ribo-seq
1 sORFs_org_Mouse
12114 ENSMUST00000114763 Fstl1-201 protein_coding Ribo-seq
moderate 2 sORFs_org_Mouse
1187739 195

AAG...

KNQ...

AAG ncRNA
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

35710 ENSMUST00000123077 Fstl1-202 processed_transcript Ribo-seq
1 sORFs_org_Mouse
1189100 237

AGG...

RRT...

AGG Alternative
InCDS
Overlapping
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

12114 ENSMUST00000114763 Fstl1-201 protein_coding Ribo-seq
1 sORFs_org_Mouse
1714428 225

CTG...

LGL...

CTG ncRNA
sORF
MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

35710 ENSMUST00000123077 Fstl1-202 processed_transcript Ribo-seq
1 sORFs_org_Mouse
1189119 96

ATG...

MKQ...

ATG ncRNA
sORF
E14, MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

35710 ENSMUST00000123077 Fstl1-202 processed_transcript Ribo-seq
3 sORFs_org_Mouse
373284 129

CTG...

LLP...

CTG ncRNA
sORF
MEF, v6-5, Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

35710 ENSMUST00000123077 Fstl1-202 processed_transcript Ribo-seq
5 sORFs_org_Mouse
33366 ENSMUST00000127495 Fstl1-204 processed_transcript Ribo-seq
1 sORFs_org_Mouse
1146655 120

CTG...

LCF...

CTG Intronic
sORF
MEF, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

373699 ENSMUST00000135668 Fstl1-205 retained_intron Ribo-seq
4 sORFs_org_Mouse
33872 72

GTG...

VEQ...

GTG ncRNA
sORF
Brain, E14, MEF,
v6-5, Liver, Testis
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

35710 ENSMUST00000123077 Fstl1-202 processed_transcript Ribo-seq
6 sORFs_org_Mouse
33366 ENSMUST00000127495 Fstl1-204 processed_transcript Ribo-seq
3 sORFs_org_Mouse
422003 84

GTG...

VET...

GTG ncRNA
sORF
3T3, C2C12, MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

34102 ENSMUST00000125279 Fstl1-203 processed_transcript Ribo-seq
3 sORFs_org_Mouse
421910 78

ACG...

TLP...

ACG ncRNA
sORF
Alternative
Upstream
C2C12, E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

34102 ENSMUST00000125279 Fstl1-203 processed_transcript Ribo-seq
1 sORFs_org_Mouse
12114 ENSMUST00000114763 Fstl1-201 protein_coding Ribo-seq
1 sORFs_org_Mouse
12354 93

ATG...

MSS...

ATG Alternative
InCDS
Overlapping
sORF
ncRNA
3T3, Brain, E14,
MEF, R1E, Skin_tumor,
v6-5, Testis
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

12114 ENSMUST00000114763 Fstl1-201 protein_coding Ribo-seq
moderate 10 sORFs_org_Mouse
33366 ENSMUST00000127495 Fstl1-204 processed_transcript Ribo-seq
3 sORFs_org_Mouse
1185921 63

AAG...

KSS...

AAG ncRNA
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

35710 ENSMUST00000123077 Fstl1-202 processed_transcript Ribo-seq
1 sORFs_org_Mouse
1356736 162

TTG...

LLM...

TTG ncRNA
sORF
E14, MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

35710 ENSMUST00000123077 Fstl1-202 processed_transcript Ribo-seq
4 sORFs_org_Mouse
12322 30

ATG...

MSR...

ATG Alternative
InCDS
Overlapping
sORF
ncRNA
3T3, R1E, Skin_tumor,
Testis, Brain, E14,
MEF, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

12114 ENSMUST00000114763 Fstl1-201 protein_coding Ribo-seq
4 sORFs_org_Mouse
33366 ENSMUST00000127495 Fstl1-204 processed_transcript Ribo-seq
1 sORFs_org_Mouse
35710 ENSMUST00000123077 Fstl1-202 processed_transcript Ribo-seq
6 sORFs_org_Mouse
1186704 252

AGG...

RIC...

AGG ncRNA
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

35710 ENSMUST00000123077 Fstl1-202 processed_transcript Ribo-seq
1 sORFs_org_Mouse
1621494 201

CTG...

LML...

CTG ncRNA
sORF
MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

35710 ENSMUST00000123077 Fstl1-202 processed_transcript Ribo-seq
3 sORFs_org_Mouse
1189230 108

ACG...

TLP...

ACG Alternative
Overlapping
sORF
Upstream
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

12114 ENSMUST00000114763 Fstl1-201 protein_coding Ribo-seq
1 sORFs_org_Mouse
1623263 207

GTG...

VSL...

GTG ncRNA
sORF
MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

35710 ENSMUST00000123077 Fstl1-202 processed_transcript Ribo-seq
3 sORFs_org_Mouse
1676890 66

TTG...

LGR...

TTG ncRNA
sORF
MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

35710 ENSMUST00000123077 Fstl1-202 processed_transcript Ribo-seq
1 sORFs_org_Mouse
1187140 90

ATC...

ILD...

ATC ncRNA
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

35710 ENSMUST00000123077 Fstl1-202 processed_transcript Ribo-seq
1 sORFs_org_Mouse
696248 96

CTG...

LMR...

CTG Alternative
InCDS
Overlapping
sORF
ncRNA
3T3, Brain, E14,
MEF, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

12114 ENSMUST00000114763 Fstl1-201 protein_coding Ribo-seq
2 sORFs_org_Mouse
35710 ENSMUST00000123077 Fstl1-202 processed_transcript Ribo-seq
6 sORFs_org_Mouse
695477 78

CTG...

LRQ...

CTG Intronic
sORF
Alternative
InCDS
Overlapping
MEF, v6-5, 3T3,
Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

373699 ENSMUST00000135668 Fstl1-205 retained_intron Ribo-seq
moderate 3 sORFs_org_Mouse
12114 ENSMUST00000114763 Fstl1-201 protein_coding Ribo-seq
moderate 2 sORFs_org_Mouse
34064 105

GTG...

VDC...

GTG ncRNA
sORF
Brain, E14, MEF,
Testis
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

35710 ENSMUST00000123077 Fstl1-202 processed_transcript Ribo-seq
4 sORFs_org_Mouse
33366 ENSMUST00000127495 Fstl1-204 processed_transcript Ribo-seq
1 sORFs_org_Mouse
12158 42

ATG...

MAG...

ATG ncRNA
sORF
Alternative
InCDS
Overlapping
Brain, MEF, Testis,
3T3, E14, R1E,
Skin_tumor, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

33366 ENSMUST00000127495 Fstl1-204 processed_transcript Ribo-seq
3 sORFs_org_Mouse
12114 ENSMUST00000114763 Fstl1-201 protein_coding Ribo-seq
moderate 9 sORFs_org_Mouse
1716229 177

GTG...

VSS...

GTG ncRNA
sORF
MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

34102 ENSMUST00000125279 Fstl1-203 processed_transcript Ribo-seq
1 sORFs_org_Mouse
35709 168

CTG...

LDS...

CTG ncRNA
sORF
E14, MEF, Testis
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

35710 ENSMUST00000123077 Fstl1-202 processed_transcript Ribo-seq
4 sORFs_org_Mouse
1676703 138

ATG...

MSQ...

ATG ncRNA
sORF
MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

35710 ENSMUST00000123077 Fstl1-202 processed_transcript Ribo-seq
2 sORFs_org_Mouse
421952 57

ACG...

TMA...

ACG Alternative
InCDS
Overlapping
sORF
ncRNA
E14, MEF, C2C12
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

12114 ENSMUST00000114763 Fstl1-201 protein_coding Ribo-seq
2 sORFs_org_Mouse
34102 ENSMUST00000125279 Fstl1-203 processed_transcript Ribo-seq
1 sORFs_org_Mouse
33963 144

GTG...

VCG...

GTG ncRNA
sORF
Brain, MEF, Testis
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

33366 ENSMUST00000127495 Fstl1-204 processed_transcript Ribo-seq
5 sORFs_org_Mouse
1186378 156

AAG...

KTG...

AAG ncRNA
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

35710 ENSMUST00000123077 Fstl1-202 processed_transcript Ribo-seq
1 sORFs_org_Mouse
1676931 198

CTG...

LRK...

CTG ncRNA
sORF
MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

35710 ENSMUST00000123077 Fstl1-202 processed_transcript Ribo-seq
2 sORFs_org_Mouse
1187429 87

ACG...

TKP...

ACG ncRNA
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

35710 ENSMUST00000123077 Fstl1-202 processed_transcript Ribo-seq
1 sORFs_org_Mouse
1624213 132

TTG...

LAV...

TTG InCDS
Overlapping
sORF
MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

12114 ENSMUST00000114763 Fstl1-201 protein_coding Ribo-seq
3 sORFs_org_Mouse
692875 36

ATG...

MQT...

ATG Intronic
sORF
Alternative
InCDS
Overlapping
E14, 3T3, Brain,
Glioma, Liver, MEF,
MESC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

373699 ENSMUST00000135668 Fstl1-205 retained_intron Ribo-seq
moderate 1 sORFs_org_Mouse
12114 ENSMUST00000114763 Fstl1-201 protein_coding Ribo-seq
moderate 4 sORFs_org_Mouse
Johnstone2016
1189045 123

ACG...

TMA...

ACG ncRNA
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

374681 ENSMUST00000152579 Fstl1-206 processed_transcript Ribo-seq
1 sORFs_org_Mouse
1187484 93

AAG...

KQI...

AAG Alternative
InCDS
Overlapping
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

12114 ENSMUST00000114763 Fstl1-201 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
699675 75

ATG...

MAG...

ATG ncRNA
sORF
3T3, MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

34102 ENSMUST00000125279 Fstl1-203 processed_transcript Ribo-seq
2 sORFs_org_Mouse
1622145 198

ATG...

MLA...

ATG ncRNA
sORF
MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

35710 ENSMUST00000123077 Fstl1-202 processed_transcript Ribo-seq
3 sORFs_org_Mouse
694337 120

GTG...

VLT...

GTG Alternative
InCDS
Overlapping
sORF
ncRNA
3T3, Brain, E14,
MEF, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

12114 ENSMUST00000114763 Fstl1-201 protein_coding Ribo-seq
2 sORFs_org_Mouse
35710 ENSMUST00000123077 Fstl1-202 processed_transcript Ribo-seq
6 sORFs_org_Mouse
693557 30

CTG...

LPH...

CTG Alternative
InCDS
Overlapping
sORF
3T3, Brain, MEF,
R1E, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

12114 ENSMUST00000114763 Fstl1-201 protein_coding Ribo-seq
weak 5 sORFs_org_Mouse
1189323 279

CTG...

LPP...

CTG ncRNA
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

374681 ENSMUST00000152579 Fstl1-206 processed_transcript Ribo-seq
1 sORFs_org_Mouse
1186106 207

ATG...

MKQ...

ATG ncRNA
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

35710 ENSMUST00000123077 Fstl1-202 processed_transcript Ribo-seq
1 sORFs_org_Mouse
1676613 30

TTG...

LLT...

TTG ncRNA
sORF
MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

35710 ENSMUST00000123077 Fstl1-202 processed_transcript Ribo-seq
1 sORFs_org_Mouse
1716025 141

GTG...

VEQ...

GTG ncRNA
sORF
MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

35710 ENSMUST00000123077 Fstl1-202 processed_transcript Ribo-seq
1 sORFs_org_Mouse
1146790 159

CTG...

LMA...

CTG ncRNA
sORF
E14, MEF, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

35710 ENSMUST00000123077 Fstl1-202 processed_transcript Ribo-seq
5 sORFs_org_Mouse
1002927 168

CTG...

LSD...

CTG ncRNA
sORF
Brain, E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

35710 ENSMUST00000123077 Fstl1-202 processed_transcript Ribo-seq
2 sORFs_org_Mouse
1189627 213

ATC...

ILD...

ATC ncRNA
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

35710 ENSMUST00000123077 Fstl1-202 processed_transcript Ribo-seq
1 sORFs_org_Mouse
1624963 150

ATG...

MTR...

ATG InCDS
Overlapping
sORF
MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

12114 ENSMUST00000114763 Fstl1-201 protein_coding Ribo-seq
4 sORFs_org_Mouse
12577 54

ATG...

MSR...

ATG Alternative
InCDS
Overlapping
sORF
3T3, Brain, E14,
MEF, R1E, Skin_tumor,
Testis, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

12114 ENSMUST00000114763 Fstl1-201 protein_coding Ribo-seq
11 sORFs_org_Mouse
34700 147

CTG...

LEA...

CTG ncRNA
sORF
Brain, MEF, Testis
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

33366 ENSMUST00000127495 Fstl1-204 processed_transcript Ribo-seq
3 sORFs_org_Mouse

Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5