Metam
ORF

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Gene

Gene

ID CARD

ID

NCBI:12757

Aliases

AV026556
Clta, ENSMUSG00000028478, Lca
MGI:894297, NCBI:12757, OFF:Clta

Chromosome

4

Transcripts

47 ORFs
6 known transcripts
118 ORF to known transcript associations

MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

ORFs

Display all the transcripts related to the entry.

58013 ENSMUST00000107851 Clta-205 protein_coding
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

161137 234

TTG ...

LLD ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain
827738 201

CTG ...

LHA ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain
156114 120

TTG ...

LTS ...

Ribo-seq
TTG

moderate

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Liver
166456 219

GTG ...

VAR ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain
166567 240

CTG ...

LGL ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain
827403 153

CTG ...

LTI ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain
58012 63

ATG ...

MRG ...

Ribo-seq
ATG

2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain, Testis
154654 99

CTG ...

LSG ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Liver
934 42

GTG ...

VER ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain
161790 246

TTG ...

LSL ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain
162287 255

CTG ...

LEK ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain
163874 231

CTG ...

LDS ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain
159833 153

ATG ...

MVQ ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Liver
827426 165

ATG ...

MSS ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain
544739 ENSMUST00000107846 Clta-202 protein_coding
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

1229260 117

ACG ...

TSH ...

Ribo-seq
ACG

weak

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
896741 72

AAG ...

KSG ...

Ribo-seq
AAG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
1227157 30

AAG ...

KKR ...

Ribo-seq
AAG

moderate

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
156114 120

TTG ...

LTS ...

Ribo-seq
TTG

moderate

3 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, BMDC, Liver
513562 135

TTG ...

LGC ...

Ribo-seq
TTG

strong

3 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
3T3, E14, Liver
509039 186

GTG ...

VSA ...

Ribo-seq
GTG

moderate

4 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
3T3, BMDC, E14,
Liver
149041 63

CTG ...

LSW ...

Ribo-seq
CTG

moderate

3 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
3T3, BMDC, Liver
165915 69

ATG ...

MRG ...

Ribo-seq
ATG

3 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, BMDC, E14
898026 108

ATT ...

IRR ...

Ribo-seq
ATT

weak

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
511735 69

GTG ...

VSA ...

Ribo-seq
GTG

moderate

3 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
3T3, BMDC, E14
551557 48

ATG ...

MPI ...

Ribo-seq
ATG

weak

3 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, BMDC, E14
508951 195

CTG ...

LGG ...

Ribo-seq
CTG

moderate

4 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
3T3, BMDC, E14,
Liver
546410 36

ATG ...

MSL ...

Ribo-seq
ATG

moderate

3 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, BMDC, E14
934 42

GTG ...

VER ...

Ribo-seq
GTG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, BMDC
1231759 57

ACG ...

TSS ...

Ribo-seq
ACG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
1229853 72

AAG ...

KSR ...

Ribo-seq
AAG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
162595 183

GTG ...

VER ...

Ribo-seq
GTG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, BMDC
1230733 45

AGG ...

RPK ...

Ribo-seq
AGG

moderate

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
898116 135

ACG ...

TQP ...

Ribo-seq
ACG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
1233613 78

AAG ...

KSG ...

Ribo-seq
AAG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
897104 51

ACG ...

TSS ...

Ribo-seq
ACG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
898136 126

ACG ...

TTL ...

Ribo-seq
ACG

weak

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
154654 99

CTG ...

LSG ...

Ribo-seq
CTG

moderate

3 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, BMDC, E14
153283 72

GTG ...

VTL ...

Ribo-seq
GTG

weak

2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, BMDC
898970 114

ATC ...

IDC ...

Ribo-seq
ATC

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
977226 162

AGG ...

RPS ...

Ribo-seq
AGG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
509477 198

CTG ...

LLG ...

Ribo-seq
CTG

weak

3 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
3T3, BMDC, Liver
58012 63

ATG ...

MRG ...

Ribo-seq
ATG

3 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, BMDC, E14
159833 153

ATG ...

MVQ ...

Ribo-seq
ATG

3 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, BMDC, E14
899838 96

CTG ...

LKV ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC
161138 ENSMUST00000107847 Clta-203 protein_coding
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

154654 99

CTG ...

LSG ...

Ribo-seq
CTG

moderate

3 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
B_cell, E14, NSC
162287 255

CTG ...

LEK ...

Ribo-seq
CTG

9 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell, BMDC, Brain,
E14, MEF, NSC,
R1E, v6-5
513562 135

TTG ...

LGC ...

Ribo-seq
TTG

strong

2 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
B_cell, E14
153283 72

GTG ...

VTL ...

Ribo-seq
GTG

weak

4 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
B_cell, E14, NSC,
v6-5
163874 231

CTG ...

LDS ...

Ribo-seq
CTG

9 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell, BMDC, Brain,
E14, MEF, NSC,
R1E, v6-5
159833 153

ATG ...

MVQ ...

Ribo-seq
ATG

7 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
B_cell, E14, MEF,
Neutrophil, NSC, v6-5
899838 96

CTG ...

LKV ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Neutrophil
509477 198

CTG ...

LLG ...

Ribo-seq
CTG

weak

4 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
B_cell, MEF, Neutrophil,
v6-5
827738 201

CTG ...

LHA ...

Ribo-seq
CTG

5 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell, E14, MEF,
R1E
509039 186

GTG ...

VSA ...

Ribo-seq
GTG

moderate

2 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
B_cell, v6-5
58012 63

ATG ...

MRG ...

Ribo-seq
ATG

6 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
B_cell, E14, MEF,
NSC, v6-5
827426 165

ATG ...

MSS ...

Ribo-seq
ATG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell, MEF
1510500 57

ATG ...

MRG ...

Ribo-seq
ATG

2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
MEF, NSC
827403 153

CTG ...

LTI ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell, MEF
156114 120

TTG ...

LTS ...

Ribo-seq
TTG

moderate

4 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
B_cell, E14, NSC,
v6-5
166567 240

CTG ...

LGL ...

Ribo-seq
CTG

9 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell, BMDC, Brain,
E14, MEF, NSC,
R1E, v6-5
826850 219

GTG ...

VER ...

Ribo-seq
GTG

6 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell, E14, MEF,
NSC, v6-5
161790 246

TTG ...

LSL ...

Ribo-seq
TTG

9 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell, BMDC, Brain,
E14, MEF, NSC,
R1E, v6-5
934 42

GTG ...

VER ...

Ribo-seq
GTG

7 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell, E14, MEF,
Neutrophil, NSC, v6-5
546410 36

ATG ...

MSL ...

Ribo-seq
ATG

moderate

3 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
B_cell, E14, v6-5
508951 195

CTG ...

LGG ...

Ribo-seq
CTG

moderate

5 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
B_cell, E14, MEF,
Neutrophil, v6-5
161137 234

TTG ...

LLD ...

Ribo-seq
TTG

9 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell, BMDC, Brain,
E14, MEF, NSC,
R1E, v6-5
149041 63

CTG ...

LSW ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
E14
166456 219

GTG ...

VAR ...

Ribo-seq
GTG

7 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell, Brain, E14,
MEF, R1E, v6-5
551557 48

ATG ...

MPI ...

Ribo-seq
ATG

weak

3 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
B_cell, E14, Neutrophil
511735 69

GTG ...

VSA ...

Ribo-seq
GTG

moderate

4 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
B_cell, MEF, Neutrophil,
v6-5
935 ENSMUST00000107849 Clta-204 protein_coding
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

156114 120

TTG ...

LTS ...

Ribo-seq
TTG

moderate

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
MEF
58012 63

ATG ...

MRG ...

Ribo-seq
ATG

2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC, MEF
513562 135

TTG ...

LGC ...

Ribo-seq
TTG

strong

1 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
MEF
897104 51

ACG ...

TSS ...

Ribo-seq
ACG

2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC, MEF
899838 96

CTG ...

LKV ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC, MEF
1345 189

GTG ...

VER ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Skin_tumor
896741 72

AAG ...

KSG ...

Ribo-seq
AAG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC
898928 195

AAG ...

KRV ...

Ribo-seq
AAG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
159833 153

ATG ...

MVQ ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC
897106 183

TTG ...

LRA ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
934 42

GTG ...

VER ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Skin_tumor
898136 126

ACG ...

TTL ...

Ribo-seq
ACG

weak

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC
551557 48

ATG ...

MPI ...

Ribo-seq
ATG

weak

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
MEF
511735 69

GTG ...

VSA ...

Ribo-seq
GTG

moderate

1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
MEF
977226 162

AGG ...

RPS ...

Ribo-seq
AGG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
898026 108

ATT ...

IRR ...

Ribo-seq
ATT

weak

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
897777 45

ATC ...

IHS ...

Ribo-seq
ATC

weak

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
509039 186

GTG ...

VSA ...

Ribo-seq
GTG

moderate

1 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
BMDC
896372 120

AAG ...

KWI ...

Ribo-seq
AAG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC
898970 114

ATC ...

IDC ...

Ribo-seq
ATC

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC
898116 135

ACG ...

TQP ...

Ribo-seq
ACG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC
149042 ENSMUST00000107845 Clta-201 protein_coding
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

156114 120

TTG ...

LTS ...

Ribo-seq
TTG

moderate

3 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain, R1E
551557 48

ATG ...

MPI ...

Ribo-seq
ATG

weak

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
MEF
165915 69

ATG ...

MRG ...

Ribo-seq
ATG

4 sORFs_org_Mouse
Johnstone2016
    InCDS
    Overlapping
    sORF
Brain, Glioma, Liver,
MEF, MESC, R1E
897106 183

TTG ...

LRA ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain
934 42

GTG ...

VER ...

Ribo-seq
GTG

4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, MEF, R1E
58012 63

ATG ...

MRG ...

Ribo-seq
ATG

3 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain, R1E
1555677 189

GTG ...

VRL ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain
162595 183

GTG ...

VER ...

Ribo-seq
GTG

4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, MEF, R1E
546410 36

ATG ...

MSL ...

Ribo-seq
ATG

moderate

2 sORFs_org_Mouse
Johnstone2016
    InCDS
    Overlapping
    sORF
Brain, Glioma, Liver,
MEF, MESC
153283 72

GTG ...

VTL ...

Ribo-seq
GTG

weak

3 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain, R1E
511735 69

GTG ...

VSA ...

Ribo-seq
GTG

moderate

1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
MEF
154654 99

CTG ...

LSG ...

Ribo-seq
CTG

moderate

3 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain, R1E
149041 63

CTG ...

LSW ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
Brain
159833 153

ATG ...

MVQ ...

Ribo-seq
ATG

3 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain, R1E
508952 ENSMUST00000170241 Clta-206 protein_coding
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

159833 153

ATG ...

MVQ ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Spleen_B_cell
508951 195

CTG ...

LGG ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
Spleen_B_cell
934 42

GTG ...

VER ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Spleen_B_cell
513562 135

TTG ...

LGC ...

Ribo-seq
TTG

strong

1 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
Spleen_B_cell
509477 198

CTG ...

LLG ...

Ribo-seq
CTG

weak

1 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
Spleen_B_cell
156114 120

TTG ...

LTS ...

Ribo-seq
TTG

moderate

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Spleen_B_cell
162595 183

GTG ...

VER ...

Ribo-seq
GTG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Liver, Spleen_B_cell
58012 63

ATG ...

MRG ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Spleen_B_cell
509039 186

GTG ...

VSA ...

Ribo-seq
GTG

moderate

1 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
Spleen_B_cell
154654 99

CTG ...

LSG ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Spleen_B_cell
511735 69

GTG ...

VSA ...

Ribo-seq
GTG

moderate

1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
Spleen_B_cell
153283 72

GTG ...

VTL ...

Ribo-seq
GTG

weak

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Liver
165915 69

ATG ...

MRG ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Spleen_B_cell

ORFs

47 ORFs
6 known transcripts
118 ORF to known transcript associations

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF Length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Start codon

The start codon sequence of the ORF.

ORF annotations

A comma-separated list of all the annotations computed by our algorithm for the ORF. This list includes the annotations computed for the ORF for all transcripts. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of all the cell types in which the ORF has already been identified.

Transcripts

Display all the transcripts related to the entry.

161137 234

TTG...

LLD...

TTG Alternative
InCDS
Overlapping
sORF
Brain, B_cell, BMDC,
E14, MEF, NSC,
R1E, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

58013 ENSMUST00000107851 Clta-205 protein_coding Ribo-seq
1 sORFs_org_Mouse
161138 ENSMUST00000107847 Clta-203 protein_coding Ribo-seq
9 sORFs_org_Mouse
1229260 117

ACG...

TSH...

ACG InCDS
Overlapping
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

544739 ENSMUST00000107846 Clta-202 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
154654 99

CTG...

LSG...

CTG InCDS
Overlapping
sORF
B_cell, E14, NSC,
Liver, Spleen_B_cell, 3T3,
BMDC, Brain, R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

161138 ENSMUST00000107847 Clta-203 protein_coding Ribo-seq
moderate 3 sORFs_org_Mouse
58013 ENSMUST00000107851 Clta-205 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
508952 ENSMUST00000170241 Clta-206 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
544739 ENSMUST00000107846 Clta-202 protein_coding Ribo-seq
moderate 3 sORFs_org_Mouse
149042 ENSMUST00000107845 Clta-201 protein_coding Ribo-seq
moderate 3 sORFs_org_Mouse
156114 120

TTG...

LTS...

TTG InCDS
Overlapping
sORF
MEF, Brain, R1E,
3T3, BMDC, Liver,
Spleen_B_cell, B_cell, E14,
NSC, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

935 ENSMUST00000107849 Clta-204 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
149042 ENSMUST00000107845 Clta-201 protein_coding Ribo-seq
moderate 3 sORFs_org_Mouse
544739 ENSMUST00000107846 Clta-202 protein_coding Ribo-seq
moderate 3 sORFs_org_Mouse
58013 ENSMUST00000107851 Clta-205 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
508952 ENSMUST00000170241 Clta-206 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
161138 ENSMUST00000107847 Clta-203 protein_coding Ribo-seq
moderate 4 sORFs_org_Mouse
551557 48

ATG...

MPI...

ATG InCDS
Overlapping
sORF
MEF, 3T3, BMDC,
E14, B_cell, Neutrophil
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

149042 ENSMUST00000107845 Clta-201 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
544739 ENSMUST00000107846 Clta-202 protein_coding Ribo-seq
weak 3 sORFs_org_Mouse
935 ENSMUST00000107849 Clta-204 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
161138 ENSMUST00000107847 Clta-203 protein_coding Ribo-seq
weak 3 sORFs_org_Mouse
162287 255

CTG...

LEK...

CTG Alternative
InCDS
Overlapping
sORF
B_cell, BMDC, Brain,
E14, MEF, NSC,
R1E, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

161138 ENSMUST00000107847 Clta-203 protein_coding Ribo-seq
9 sORFs_org_Mouse
58013 ENSMUST00000107851 Clta-205 protein_coding Ribo-seq
1 sORFs_org_Mouse
827738 201

CTG...

LHA...

CTG Alternative
InCDS
Overlapping
sORF
Brain, B_cell, E14,
MEF, R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

58013 ENSMUST00000107851 Clta-205 protein_coding Ribo-seq
1 sORFs_org_Mouse
161138 ENSMUST00000107847 Clta-203 protein_coding Ribo-seq
5 sORFs_org_Mouse
896741 72

AAG...

KSG...

AAG InCDS
Overlapping
sORF
E14, BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

544739 ENSMUST00000107846 Clta-202 protein_coding Ribo-seq
1 sORFs_org_Mouse
935 ENSMUST00000107849 Clta-204 protein_coding Ribo-seq
1 sORFs_org_Mouse
58012 63

ATG...

MRG...

ATG InCDS
Overlapping
sORF
BMDC, MEF, Brain,
Testis, R1E, B_cell,
E14, NSC, v6-5,
Spleen_B_cell, 3T3
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

935 ENSMUST00000107849 Clta-204 protein_coding Ribo-seq
2 sORFs_org_Mouse
58013 ENSMUST00000107851 Clta-205 protein_coding Ribo-seq
2 sORFs_org_Mouse
149042 ENSMUST00000107845 Clta-201 protein_coding Ribo-seq
3 sORFs_org_Mouse
161138 ENSMUST00000107847 Clta-203 protein_coding Ribo-seq
6 sORFs_org_Mouse
508952 ENSMUST00000170241 Clta-206 protein_coding Ribo-seq
1 sORFs_org_Mouse
544739 ENSMUST00000107846 Clta-202 protein_coding Ribo-seq
3 sORFs_org_Mouse
513562 135

TTG...

LGC...

TTG Alternative
Overlapping
sORF
Upstream
B_cell, E14, MEF,
3T3, Liver, Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

161138 ENSMUST00000107847 Clta-203 protein_coding Ribo-seq
strong 2 sORFs_org_Mouse
935 ENSMUST00000107849 Clta-204 protein_coding Ribo-seq
strong 1 sORFs_org_Mouse
544739 ENSMUST00000107846 Clta-202 protein_coding Ribo-seq
strong 3 sORFs_org_Mouse
508952 ENSMUST00000170241 Clta-206 protein_coding Ribo-seq
strong 1 sORFs_org_Mouse
153283 72

GTG...

VTL...

GTG InCDS
Overlapping
sORF
B_cell, E14, NSC,
v6-5, Liver, Brain,
R1E, 3T3, BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

161138 ENSMUST00000107847 Clta-203 protein_coding Ribo-seq
weak 4 sORFs_org_Mouse
508952 ENSMUST00000170241 Clta-206 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
149042 ENSMUST00000107845 Clta-201 protein_coding Ribo-seq
weak 3 sORFs_org_Mouse
544739 ENSMUST00000107846 Clta-202 protein_coding Ribo-seq
weak 2 sORFs_org_Mouse
897104 51

ACG...

TSS...

ACG InCDS
Overlapping
sORF
BMDC, MEF, E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

935 ENSMUST00000107849 Clta-204 protein_coding Ribo-seq
2 sORFs_org_Mouse
544739 ENSMUST00000107846 Clta-202 protein_coding Ribo-seq
1 sORFs_org_Mouse
165915 69

ATG...

MRG...

ATG InCDS
Overlapping
sORF
Brain, Glioma, Liver,
MEF, MESC, R1E,
3T3, BMDC, E14,
Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

149042 ENSMUST00000107845 Clta-201 protein_coding Ribo-seq
4 sORFs_org_Mouse
Johnstone2016
544739 ENSMUST00000107846 Clta-202 protein_coding Ribo-seq
3 sORFs_org_Mouse
508952 ENSMUST00000170241 Clta-206 protein_coding Ribo-seq
1 sORFs_org_Mouse
159833 153

ATG...

MVQ...

ATG InCDS
Overlapping
sORF
Spleen_B_cell, B_cell, E14,
MEF, Neutrophil, NSC,
v6-5, BMDC, Brain,
R1E, 3T3, Liver
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

508952 ENSMUST00000170241 Clta-206 protein_coding Ribo-seq
1 sORFs_org_Mouse
161138 ENSMUST00000107847 Clta-203 protein_coding Ribo-seq
7 sORFs_org_Mouse
935 ENSMUST00000107849 Clta-204 protein_coding Ribo-seq
1 sORFs_org_Mouse
149042 ENSMUST00000107845 Clta-201 protein_coding Ribo-seq
3 sORFs_org_Mouse
544739 ENSMUST00000107846 Clta-202 protein_coding Ribo-seq
3 sORFs_org_Mouse
58013 ENSMUST00000107851 Clta-205 protein_coding Ribo-seq
1 sORFs_org_Mouse
1227157 30

AAG...

KKR...

AAG InCDS
Overlapping
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

544739 ENSMUST00000107846 Clta-202 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
508951 195

CTG...

LGG...

CTG Alternative
Overlapping
sORF
Upstream
Spleen_B_cell, 3T3, BMDC,
E14, Liver, B_cell,
MEF, Neutrophil, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

508952 ENSMUST00000170241 Clta-206 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
544739 ENSMUST00000107846 Clta-202 protein_coding Ribo-seq
moderate 4 sORFs_org_Mouse
161138 ENSMUST00000107847 Clta-203 protein_coding Ribo-seq
moderate 5 sORFs_org_Mouse
899838 96

CTG...

LKV...

CTG InCDS
Overlapping
sORF
BMDC, MEF, Neutrophil
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

935 ENSMUST00000107849 Clta-204 protein_coding Ribo-seq
2 sORFs_org_Mouse
161138 ENSMUST00000107847 Clta-203 protein_coding Ribo-seq
1 sORFs_org_Mouse
544739 ENSMUST00000107846 Clta-202 protein_coding Ribo-seq
1 sORFs_org_Mouse
1345 189

GTG...

VER...

GTG Alternative
InCDS
Overlapping
sORF
Skin_tumor
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

935 ENSMUST00000107849 Clta-204 protein_coding Ribo-seq
1 sORFs_org_Mouse
163874 231

CTG...

LDS...

CTG Alternative
InCDS
Overlapping
sORF
B_cell, BMDC, Brain,
E14, MEF, NSC,
R1E, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

161138 ENSMUST00000107847 Clta-203 protein_coding Ribo-seq
9 sORFs_org_Mouse
58013 ENSMUST00000107851 Clta-205 protein_coding Ribo-seq
1 sORFs_org_Mouse
166456 219

GTG...

VAR...

GTG Alternative
InCDS
Overlapping
sORF
Brain, B_cell, E14,
MEF, R1E, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

58013 ENSMUST00000107851 Clta-205 protein_coding Ribo-seq
1 sORFs_org_Mouse
161138 ENSMUST00000107847 Clta-203 protein_coding Ribo-seq
7 sORFs_org_Mouse
166567 240

CTG...

LGL...

CTG Alternative
InCDS
Overlapping
sORF
Brain, B_cell, BMDC,
E14, MEF, NSC,
R1E, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

58013 ENSMUST00000107851 Clta-205 protein_coding Ribo-seq
1 sORFs_org_Mouse
161138 ENSMUST00000107847 Clta-203 protein_coding Ribo-seq
9 sORFs_org_Mouse
509039 186

GTG...

VSA...

GTG Alternative
Overlapping
sORF
Upstream
3T3, BMDC, E14,
Liver, B_cell, v6-5,
Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

544739 ENSMUST00000107846 Clta-202 protein_coding Ribo-seq
moderate 4 sORFs_org_Mouse
161138 ENSMUST00000107847 Clta-203 protein_coding Ribo-seq
moderate 2 sORFs_org_Mouse
508952 ENSMUST00000170241 Clta-206 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
935 ENSMUST00000107849 Clta-204 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
934 42

GTG...

VER...

GTG Alternative
InCDS
Overlapping
sORF
Spleen_B_cell, Brain, MEF,
R1E, 3T3, BMDC,
Skin_tumor, B_cell, E14,
Neutrophil, NSC, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

508952 ENSMUST00000170241 Clta-206 protein_coding Ribo-seq
1 sORFs_org_Mouse
149042 ENSMUST00000107845 Clta-201 protein_coding Ribo-seq
4 sORFs_org_Mouse
58013 ENSMUST00000107851 Clta-205 protein_coding Ribo-seq
1 sORFs_org_Mouse
544739 ENSMUST00000107846 Clta-202 protein_coding Ribo-seq
2 sORFs_org_Mouse
935 ENSMUST00000107849 Clta-204 protein_coding Ribo-seq
1 sORFs_org_Mouse
161138 ENSMUST00000107847 Clta-203 protein_coding Ribo-seq
7 sORFs_org_Mouse
827403 153

CTG...

LTI...

CTG Alternative
InCDS
Overlapping
sORF
Brain, B_cell, MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

58013 ENSMUST00000107851 Clta-205 protein_coding Ribo-seq
1 sORFs_org_Mouse
161138 ENSMUST00000107847 Clta-203 protein_coding Ribo-seq
2 sORFs_org_Mouse
898928 195

AAG...

KRV...

AAG Alternative
InCDS
Overlapping
sORF
BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

935 ENSMUST00000107849 Clta-204 protein_coding Ribo-seq
1 sORFs_org_Mouse
897106 183

TTG...

LRA...

TTG Alternative
InCDS
Overlapping
sORF
Brain, BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

149042 ENSMUST00000107845 Clta-201 protein_coding Ribo-seq
1 sORFs_org_Mouse
935 ENSMUST00000107849 Clta-204 protein_coding Ribo-seq
1 sORFs_org_Mouse
149041 63

CTG...

LSW...

CTG Alternative
Overlapping
sORF
Upstream
3T3, BMDC, Liver,
E14, Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

544739 ENSMUST00000107846 Clta-202 protein_coding Ribo-seq
moderate 3 sORFs_org_Mouse
161138 ENSMUST00000107847 Clta-203 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
149042 ENSMUST00000107845 Clta-201 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
509477 198

CTG...

LLG...

CTG Alternative
Overlapping
sORF
Upstream
Spleen_B_cell, B_cell, MEF,
Neutrophil, v6-5, 3T3,
BMDC, Liver
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

508952 ENSMUST00000170241 Clta-206 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
161138 ENSMUST00000107847 Clta-203 protein_coding Ribo-seq
weak 4 sORFs_org_Mouse
544739 ENSMUST00000107846 Clta-202 protein_coding Ribo-seq
weak 3 sORFs_org_Mouse
898026 108

ATT...

IRR...

ATT Alternative
InCDS
Overlapping
sORF
E14, BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

544739 ENSMUST00000107846 Clta-202 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
935 ENSMUST00000107849 Clta-204 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
511735 69

GTG...

VSA...

GTG Alternative
sORF
Upstream
3T3, BMDC, E14,
MEF, Spleen_B_cell, B_cell,
Neutrophil, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

544739 ENSMUST00000107846 Clta-202 protein_coding Ribo-seq
moderate 3 sORFs_org_Mouse
935 ENSMUST00000107849 Clta-204 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
508952 ENSMUST00000170241 Clta-206 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
149042 ENSMUST00000107845 Clta-201 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
161138 ENSMUST00000107847 Clta-203 protein_coding Ribo-seq
moderate 4 sORFs_org_Mouse
546410 36

ATG...

MSL...

ATG InCDS
Overlapping
sORF
3T3, BMDC, E14,
B_cell, v6-5, Brain,
Glioma, Liver, MEF,
MESC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

544739 ENSMUST00000107846 Clta-202 protein_coding Ribo-seq
moderate 3 sORFs_org_Mouse
161138 ENSMUST00000107847 Clta-203 protein_coding Ribo-seq
moderate 3 sORFs_org_Mouse
149042 ENSMUST00000107845 Clta-201 protein_coding Ribo-seq
moderate 2 sORFs_org_Mouse
Johnstone2016
162595 183

GTG...

VER...

GTG Alternative
InCDS
Overlapping
sORF
Liver, Spleen_B_cell, 3T3,
BMDC, Brain, MEF,
R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

508952 ENSMUST00000170241 Clta-206 protein_coding Ribo-seq
2 sORFs_org_Mouse
544739 ENSMUST00000107846 Clta-202 protein_coding Ribo-seq
2 sORFs_org_Mouse
149042 ENSMUST00000107845 Clta-201 protein_coding Ribo-seq
4 sORFs_org_Mouse
1231759 57

ACG...

TSS...

ACG InCDS
Overlapping
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

544739 ENSMUST00000107846 Clta-202 protein_coding Ribo-seq
1 sORFs_org_Mouse
1229853 72

AAG...

KSR...

AAG InCDS
Overlapping
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

544739 ENSMUST00000107846 Clta-202 protein_coding Ribo-seq
1 sORFs_org_Mouse
1555677 189

GTG...

VRL...

GTG Alternative
InCDS
Overlapping
sORF
Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

149042 ENSMUST00000107845 Clta-201 protein_coding Ribo-seq
1 sORFs_org_Mouse
898136 126

ACG...

TTL...

ACG InCDS
Overlapping
sORF
BMDC, E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

935 ENSMUST00000107849 Clta-204 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
544739 ENSMUST00000107846 Clta-202 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
1230733 45

AGG...

RPK...

AGG InCDS
Overlapping
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

544739 ENSMUST00000107846 Clta-202 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
898116 135

ACG...

TQP...

ACG InCDS
Overlapping
sORF
E14, BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

544739 ENSMUST00000107846 Clta-202 protein_coding Ribo-seq
1 sORFs_org_Mouse
935 ENSMUST00000107849 Clta-204 protein_coding Ribo-seq
1 sORFs_org_Mouse
827426 165

ATG...

MSS...

ATG Alternative
InCDS
Overlapping
sORF
B_cell, MEF, Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

161138 ENSMUST00000107847 Clta-203 protein_coding Ribo-seq
2 sORFs_org_Mouse
58013 ENSMUST00000107851 Clta-205 protein_coding Ribo-seq
1 sORFs_org_Mouse
1510500 57

ATG...

MRG...

ATG InCDS
Overlapping
sORF
MEF, NSC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

161138 ENSMUST00000107847 Clta-203 protein_coding Ribo-seq
2 sORFs_org_Mouse
1233613 78

AAG...

KSG...

AAG InCDS
Overlapping
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

544739 ENSMUST00000107846 Clta-202 protein_coding Ribo-seq
1 sORFs_org_Mouse
161790 246

TTG...

LSL...

TTG Alternative
InCDS
Overlapping
sORF
Brain, B_cell, BMDC,
E14, MEF, NSC,
R1E, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

58013 ENSMUST00000107851 Clta-205 protein_coding Ribo-seq
1 sORFs_org_Mouse
161138 ENSMUST00000107847 Clta-203 protein_coding Ribo-seq
9 sORFs_org_Mouse
977226 162

AGG...

RPS...

AGG Alternative
InCDS
Overlapping
sORF
MEF, E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

935 ENSMUST00000107849 Clta-204 protein_coding Ribo-seq
1 sORFs_org_Mouse
544739 ENSMUST00000107846 Clta-202 protein_coding Ribo-seq
1 sORFs_org_Mouse
897777 45

ATC...

IHS...

ATC Alternative
InCDS
Overlapping
sORF
BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

935 ENSMUST00000107849 Clta-204 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
826850 219

GTG...

VER...

GTG Alternative
InCDS
Overlapping
sORF
B_cell, E14, MEF,
NSC, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

161138 ENSMUST00000107847 Clta-203 protein_coding Ribo-seq
6 sORFs_org_Mouse
896372 120

AAG...

KWI...

AAG InCDS
Overlapping
sORF
BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

935 ENSMUST00000107849 Clta-204 protein_coding Ribo-seq
1 sORFs_org_Mouse
898970 114

ATC...

IDC...

ATC InCDS
Overlapping
sORF
BMDC, E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

935 ENSMUST00000107849 Clta-204 protein_coding Ribo-seq
1 sORFs_org_Mouse
544739 ENSMUST00000107846 Clta-202 protein_coding Ribo-seq
1 sORFs_org_Mouse

Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5