Gene NCBI:12443 | MetamORF

Gene

ID CARD

NCBI:12443

Aliases

AI327039
bcl-1, Ccnd1, cD1
CycD1, Cyl-1, ENSMUSG00000070348
MGI:88313, NCBI:12443, OFF:Ccnd1
PRAD1

Chromosome

Transcripts

42 ORFs
3 known transcripts
71 ORF to known transcript associations

MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

ORFs

Display all the transcripts related to the entry.

4178

ENSMUST00000208193

Ccnd1-203

retained_intron

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
76368	147	TTG ...	LKK ...	Ribo-seq	TTG		5	sORFs_org_Mouse	Intronic sORF	Brain, Liver, MEF, R1E, Testis
72834	162	CTG ...	LSL ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Intronic sORF	Brain, Liver, MEF, R1E, Testis
596140	45	CTG ...	LLP ...	Ribo-seq	CTG	weak	6	sORFs_org_Mouse	Intronic sORF	E14, Liver, MEF, NSC, R1E, v6-5
219081	66	GTG ...	VPS ...	Ribo-seq	GTG		5	sORFs_org_Mouse	Intronic sORF	Brain, MEF, NSC, R1E, v6-5
224806	36	CTG ...	LLG ...	Ribo-seq	CTG	weak	5	sORFs_org_Mouse	Intronic sORF	Brain, Liver, MEF, NSC, R1E
1689530	42	GTG ...	VFL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	MEF
73313	72	TTG ...	LTA ...	Ribo-seq	TTG		5	sORFs_org_Mouse	Intronic sORF	Brain, Liver, MEF, R1E, Testis
221726	60	CTG ...	LPR ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Intronic sORF	Brain, MEF, R1E
216917	72	GTG ...	VEP ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	Intronic sORF	Brain, MEF, R1E
74261	156	CTG ...	LEP ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Intronic sORF	Brain, Liver, MEF, R1E, Testis
598207	36	CTG ...	LRS ...	Ribo-seq	CTG	moderate	5	sORFs_org_Mouse	Intronic sORF	E14, MEF, NSC, R1E, v6-5
212078	45	GTG ...	VRS ...	Ribo-seq	GTG	weak	4	sORFs_org_Mouse	Intronic sORF	Brain, Liver, MEF, R1E
218545	90	GTG ...	VRP ...	Ribo-seq	GTG		7	sORFs_org_Mouse	Intronic sORF	Brain, E14, MEF, NSC, R1E, v6-5
590649	39	GTG ...	VLR ...	Ribo-seq	GTG	weak	5	sORFs_org_Mouse	Intronic sORF	E14, MEF, NSC, R1E, v6-5
74487	189	CTG ...	LAM ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Intronic sORF	Brain, Liver, MEF, R1E, Testis
73083	123	CTG ...	LGA ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Intronic sORF	Brain, Liver, MEF, R1E, Testis
217651	150	CTG ...	LTP ...	Ribo-seq	CTG		8	sORFs_org_Mouse	Intronic sORF	Brain, E14, Liver, MEF, NSC, R1E, v6-5
213489	81	GTG ...	VQK ...	Ribo-seq	GTG		8	sORFs_org_Mouse	Intronic sORF	BMDC, Brain, E14, Liver, MEF, NSC, R1E, v6-5
76135	207	CTG ...	LCC ...	Ribo-seq	CTG		11	sORFs_org_Mouse	Intronic sORF	Brain, C2C12, E14, Liver, MEF, NSC, R1E, Testis, v6-5
217688	48	TTG ...	LCH ...	Ribo-seq	TTG		8	sORFs_org_Mouse	Intronic sORF	Brain, E14, MEF, NSC, R1E, v6-5
76086	132	CTG ...	LQL ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Intronic sORF	Brain, Liver, MEF, R1E, Testis
591701	120	GTG ...	VRR ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Intronic sORF	R1E
212242	33	CTG ...	LGA ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Intronic sORF	Brain, MEF, NSC
224675	57	TTG ...	LCI ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Intronic sORF	Brain, Liver, MEF, R1E
74051	102	GTG ...	VAS ...	Ribo-seq	GTG		5	sORFs_org_Mouse	Intronic sORF	Brain, Liver, MEF, R1E, Testis
73289	195	GTG ...	VET ...	Ribo-seq	GTG		10	sORFs_org_Mouse	Intronic sORF	Brain, E14, Liver, MEF, NSC, R1E, Testis, v6-5
74289	144	GTG ...	VLR ...	Ribo-seq	GTG		9	sORFs_org_Mouse	Intronic sORF	Brain, E14, Liver, MEF, NSC, R1E, Testis, v6-5
4177	126	CTG ...	LLG ...	Ribo-seq	CTG		6	sORFs_org_Mouse	Intronic sORF	Brain, Liver, MEF, R1E, Skin_tumor, Testis
72339	141	CTG ...	LRA ...	Ribo-seq	CTG		9	sORFs_org_Mouse	Intronic sORF	Brain, E14, Liver, MEF, NSC, R1E, Testis, v6-5
74563	174	CTG ...	LDR ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Intronic sORF	Brain, Liver, MEF, R1E, Testis
223595	36	CTG ...	LTT ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Intronic sORF	Brain, MEF, R1E

5011

ENSMUST00000093962

Ccnd1-201

protein_coding

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
601006	78	CTG ...	LPR ...	Ribo-seq	CTG		12	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14, MEF, NSC, R1E, v6-5
235042	135	GTG ...	VRP ...	Ribo-seq	GTG		12	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, Liver, MEF, NSC, R1E, v6-5
600284	93	TTG ...	LCH ...	Ribo-seq	TTG		10	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, Liver, MEF, NSC, R1E, v6-5
221726	60	CTG ...	LPR ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain
212078	45	GTG ...	VRS ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain
595549	30	CTG ...	LPP ...	Ribo-seq	CTG	moderate	10	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14, MEF, NSC, R1E, v6-5
1516578	48	ATG ...	MGM ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative Downstream sORF	NSC
224806	36	CTG ...	LLG ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain
217651	150	CTG ...	LTP ...	Ribo-seq	CTG		3	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain
915699	213	ACG ...	TAA ...	Ribo-seq	ACG		2	sORFs_org_Mouse	Overlapping sORF Upstream	BMDC, E14
216917	72	GTG ...	VEP ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain
218545	90	GTG ...	VRP ...	Ribo-seq	GTG		3	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain
598207	36	CTG ...	LRS ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, MEF
591701	120	GTG ...	VRR ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain
596140	45	CTG ...	LLP ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain
5010	54	CTG ...	LTT ...	Ribo-seq	CTG		12	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, MEF, R1E, Skin_tumor, v6-5
212242	33	CTG ...	LGA ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain
217688	48	TTG ...	LCH ...	Ribo-seq	TTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain
600714	39	ATG ...	MHR ...	Ribo-seq	ATG		7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, Liver, MEF, NSC
590649	39	GTG ...	VLR ...	Ribo-seq	GTG	weak	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, MEF
223595	36	CTG ...	LTT ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain
599159	66	ATG ...	MRT ...	Ribo-seq	ATG		9	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, Glioma, Liver, MEF, MESC, NSC, R1E
230578	195	CTG ...	LTP ...	Ribo-seq	CTG		12	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, Liver, MEF, NSC, R1E, v6-5
1517040	69	CTG ...	LHA ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	NSC

1096931

ENSMUST00000135985

Ccnd1-202

retained_intron

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
216917	72	GTG ...	VEP ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Intronic sORF	E14
76368	147	TTG ...	LKK ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Intronic sORF	E14, MEF, NSC, v6-5
72834	162	CTG ...	LSL ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Intronic sORF	E14, MEF, NSC, v6-5
224675	57	TTG ...	LCI ...	Ribo-seq	TTG		6	sORFs_org_Mouse	Intronic sORF	BMDC, E14, MEF, v6-5
221726	60	CTG ...	LPR ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Intronic sORF	E14, MEF, v6-5
74487	189	CTG ...	LAM ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Intronic sORF	E14, MEF, NSC, v6-5
74261	156	CTG ...	LEP ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Intronic sORF	E14, MEF, NSC, v6-5
223595	36	CTG ...	LTT ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Intronic sORF	E14, MEF
76086	132	CTG ...	LQL ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Intronic sORF	BMDC, E14, MEF, NSC, v6-5
591701	120	GTG ...	VRR ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Intronic sORF	NSC
1689530	42	GTG ...	VFL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	MEF
74051	102	GTG ...	VAS ...	Ribo-seq	GTG		7	sORFs_org_Mouse	Intronic sORF	BMDC, E14, MEF, NSC, v6-5
73313	72	TTG ...	LTA ...	Ribo-seq	TTG		7	sORFs_org_Mouse	Intronic sORF	BMDC, E14, MEF, NSC, v6-5
74563	174	CTG ...	LDR ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Intronic sORF	E14, MEF, NSC, v6-5
73083	123	CTG ...	LGA ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Intronic sORF	BMDC, E14, MEF, NSC, v6-5
4177	126	CTG ...	LLG ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Intronic sORF	BMDC, E14, MEF, NSC, v6-5

ORFs

42 ORFs
3 known transcripts
71 ORF to known transcript associations

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF Length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Start codon

The start codon sequence of the ORF.

ORF annotations

A comma-separated list of all the annotations computed by our algorithm for the ORF. This list includes the annotations computed for the ORF for all transcripts. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of all the cell types in which the ORF has already been identified.

Transcripts

Display all the transcripts related to the entry.

76368

147

TTG...

LKK...

TTG

Intronic
sORF

Brain, Liver, MEF,
R1E, Testis, E14,
NSC, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
4178	ENSMUST00000208193	Ccnd1-203	retained_intron	Ribo-seq		5	sORFs_org_Mouse
1096931	ENSMUST00000135985	Ccnd1-202	retained_intron	Ribo-seq		4	sORFs_org_Mouse

72834

162

CTG...

LSL...

CTG

Intronic
sORF

Brain, Liver, MEF,
R1E, Testis, E14,
NSC, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
4178	ENSMUST00000208193	Ccnd1-203	retained_intron	Ribo-seq		5	sORFs_org_Mouse
1096931	ENSMUST00000135985	Ccnd1-202	retained_intron	Ribo-seq		4	sORFs_org_Mouse

601006

CTG...

LPR...

CTG

Alternative
InCDS
Overlapping
sORF

3T3, BMDC, Brain,
E14, MEF, NSC,
R1E, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
5011	ENSMUST00000093962	Ccnd1-201	protein_coding	Ribo-seq		12	sORFs_org_Mouse

235042

135

GTG...

VRP...

GTG

Alternative
InCDS
Overlapping
sORF

3T3, Brain, Liver,
MEF, NSC, R1E,
v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
5011	ENSMUST00000093962	Ccnd1-201	protein_coding	Ribo-seq		12	sORFs_org_Mouse

600284

TTG...

LCH...

TTG

Alternative
InCDS
Overlapping
sORF

3T3, Brain, Liver,
MEF, NSC, R1E,
v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
5011	ENSMUST00000093962	Ccnd1-201	protein_coding	Ribo-seq		10	sORFs_org_Mouse

216917

GTG...

VEP...

GTG

Intronic
sORF
InCDS
Overlapping

E14, Brain, MEF,
R1E, 3T3

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
1096931	ENSMUST00000135985	Ccnd1-202	retained_intron	Ribo-seq	moderate	1	sORFs_org_Mouse
4178	ENSMUST00000208193	Ccnd1-203	retained_intron	Ribo-seq	moderate	3	sORFs_org_Mouse
5011	ENSMUST00000093962	Ccnd1-201	protein_coding	Ribo-seq	moderate	3	sORFs_org_Mouse

596140

CTG...

LLP...

CTG

Intronic
sORF
InCDS
Overlapping

E14, Liver, MEF,
NSC, R1E, v6-5,
3T3, Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
4178	ENSMUST00000208193	Ccnd1-203	retained_intron	Ribo-seq	weak	6	sORFs_org_Mouse
5011	ENSMUST00000093962	Ccnd1-201	protein_coding	Ribo-seq	weak	3	sORFs_org_Mouse

219081

GTG...

VPS...

GTG

Intronic
sORF

Brain, MEF, NSC,
R1E, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
4178	ENSMUST00000208193	Ccnd1-203	retained_intron	Ribo-seq		5	sORFs_org_Mouse

224806

CTG...

LLG...

CTG

Intronic
sORF
Alternative
InCDS
Overlapping

Brain, Liver, MEF,
NSC, R1E, 3T3

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
4178	ENSMUST00000208193	Ccnd1-203	retained_intron	Ribo-seq	weak	5	sORFs_org_Mouse
5011	ENSMUST00000093962	Ccnd1-201	protein_coding	Ribo-seq	weak	3	sORFs_org_Mouse

221726

CTG...

LPR...

CTG

Alternative
InCDS
Overlapping
sORF
Intronic

3T3, Brain, MEF,
R1E, E14, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
5011	ENSMUST00000093962	Ccnd1-201	protein_coding	Ribo-seq		3	sORFs_org_Mouse
4178	ENSMUST00000208193	Ccnd1-203	retained_intron	Ribo-seq		3	sORFs_org_Mouse
1096931	ENSMUST00000135985	Ccnd1-202	retained_intron	Ribo-seq		5	sORFs_org_Mouse

1689530

GTG...

VFL...

GTG

Intronic
sORF

MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
4178	ENSMUST00000208193	Ccnd1-203	retained_intron	Ribo-seq		1	sORFs_org_Mouse
1096931	ENSMUST00000135985	Ccnd1-202	retained_intron	Ribo-seq		1	sORFs_org_Mouse

212078

GTG...

VRS...

GTG

Alternative
InCDS
Overlapping
sORF
Intronic

3T3, Brain, Liver,
MEF, R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
5011	ENSMUST00000093962	Ccnd1-201	protein_coding	Ribo-seq	weak	2	sORFs_org_Mouse
4178	ENSMUST00000208193	Ccnd1-203	retained_intron	Ribo-seq	weak	4	sORFs_org_Mouse

595549

CTG...

LPP...

CTG

Alternative
InCDS
Overlapping
sORF

3T3, BMDC, Brain,
E14, MEF, NSC,
R1E, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
5011	ENSMUST00000093962	Ccnd1-201	protein_coding	Ribo-seq	moderate	10	sORFs_org_Mouse

73313

TTG...

LTA...

TTG

Intronic
sORF

Brain, Liver, MEF,
R1E, Testis, BMDC,
E14, NSC, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
4178	ENSMUST00000208193	Ccnd1-203	retained_intron	Ribo-seq		5	sORFs_org_Mouse
1096931	ENSMUST00000135985	Ccnd1-202	retained_intron	Ribo-seq		7	sORFs_org_Mouse

1516578

ATG...

MGM...

ATG

Alternative
Downstream
sORF

NSC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
5011	ENSMUST00000093962	Ccnd1-201	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse

224675

TTG...

LCI...

TTG

Intronic
sORF

BMDC, E14, MEF,
v6-5, Brain, Liver,
R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
1096931	ENSMUST00000135985	Ccnd1-202	retained_intron	Ribo-seq		6	sORFs_org_Mouse
4178	ENSMUST00000208193	Ccnd1-203	retained_intron	Ribo-seq		4	sORFs_org_Mouse

74261

156

CTG...

LEP...

CTG

Intronic
sORF

Brain, Liver, MEF,
R1E, Testis, E14,
NSC, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
4178	ENSMUST00000208193	Ccnd1-203	retained_intron	Ribo-seq		5	sORFs_org_Mouse
1096931	ENSMUST00000135985	Ccnd1-202	retained_intron	Ribo-seq		4	sORFs_org_Mouse

598207

CTG...

LRS...

CTG

Intronic
sORF
Alternative
InCDS
Overlapping

E14, MEF, NSC,
R1E, v6-5, 3T3,
Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
4178	ENSMUST00000208193	Ccnd1-203	retained_intron	Ribo-seq	moderate	5	sORFs_org_Mouse
5011	ENSMUST00000093962	Ccnd1-201	protein_coding	Ribo-seq	moderate	4	sORFs_org_Mouse

74487

189

CTG...

LAM...

CTG

Intronic
sORF

E14, MEF, NSC,
v6-5, Brain, Liver,
R1E, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
1096931	ENSMUST00000135985	Ccnd1-202	retained_intron	Ribo-seq		4	sORFs_org_Mouse
4178	ENSMUST00000208193	Ccnd1-203	retained_intron	Ribo-seq		5	sORFs_org_Mouse

217651

150

CTG...

LTP...

CTG

InCDS
Overlapping
sORF
Intronic

3T3, Brain, E14,
Liver, MEF, NSC,
R1E, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
5011	ENSMUST00000093962	Ccnd1-201	protein_coding	Ribo-seq		3	sORFs_org_Mouse
4178	ENSMUST00000208193	Ccnd1-203	retained_intron	Ribo-seq		8	sORFs_org_Mouse

218545

GTG...

VRP...

GTG

Intronic
sORF
InCDS
Overlapping

Brain, E14, MEF,
NSC, R1E, v6-5,
3T3

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
4178	ENSMUST00000208193	Ccnd1-203	retained_intron	Ribo-seq		7	sORFs_org_Mouse
5011	ENSMUST00000093962	Ccnd1-201	protein_coding	Ribo-seq		3	sORFs_org_Mouse

590649

GTG...

VLR...

GTG

Intronic
sORF
Alternative
InCDS
Overlapping

E14, MEF, NSC,
R1E, v6-5, 3T3,
Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
4178	ENSMUST00000208193	Ccnd1-203	retained_intron	Ribo-seq	weak	5	sORFs_org_Mouse
5011	ENSMUST00000093962	Ccnd1-201	protein_coding	Ribo-seq	weak	4	sORFs_org_Mouse

915699

213

ACG...

TAA...

ACG

Overlapping
sORF
Upstream

BMDC, E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
5011	ENSMUST00000093962	Ccnd1-201	protein_coding	Ribo-seq		2	sORFs_org_Mouse

73083

123

CTG...

LGA...

CTG

Intronic
sORF

Brain, Liver, MEF,
R1E, Testis, BMDC,
E14, NSC, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
4178	ENSMUST00000208193	Ccnd1-203	retained_intron	Ribo-seq		5	sORFs_org_Mouse
1096931	ENSMUST00000135985	Ccnd1-202	retained_intron	Ribo-seq		5	sORFs_org_Mouse

213489

GTG...

VQK...

GTG

Intronic
sORF

BMDC, Brain, E14,
Liver, MEF, NSC,
R1E, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
4178	ENSMUST00000208193	Ccnd1-203	retained_intron	Ribo-seq		8	sORFs_org_Mouse

223595

CTG...

LTT...

CTG

Intronic
sORF
Alternative
InCDS
Overlapping

E14, MEF, 3T3,
Brain, R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
1096931	ENSMUST00000135985	Ccnd1-202	retained_intron	Ribo-seq		4	sORFs_org_Mouse
5011	ENSMUST00000093962	Ccnd1-201	protein_coding	Ribo-seq		3	sORFs_org_Mouse
4178	ENSMUST00000208193	Ccnd1-203	retained_intron	Ribo-seq		3	sORFs_org_Mouse

76086

132

CTG...

LQL...

CTG

Intronic
sORF

BMDC, E14, MEF,
NSC, v6-5, Brain,
Liver, R1E, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
1096931	ENSMUST00000135985	Ccnd1-202	retained_intron	Ribo-seq		5	sORFs_org_Mouse
4178	ENSMUST00000208193	Ccnd1-203	retained_intron	Ribo-seq		5	sORFs_org_Mouse

76135

207

CTG...

LCC...

CTG

Intronic
sORF

Brain, C2C12, E14,
Liver, MEF, NSC,
R1E, Testis, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
4178	ENSMUST00000208193	Ccnd1-203	retained_intron	Ribo-seq		11	sORFs_org_Mouse

591701

120

GTG...

VRR...

GTG

Intronic
sORF
Alternative
InCDS
Overlapping

NSC, R1E, 3T3,
Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
1096931	ENSMUST00000135985	Ccnd1-202	retained_intron	Ribo-seq	moderate	1	sORFs_org_Mouse
4178	ENSMUST00000208193	Ccnd1-203	retained_intron	Ribo-seq	moderate	1	sORFs_org_Mouse
5011	ENSMUST00000093962	Ccnd1-201	protein_coding	Ribo-seq	moderate	3	sORFs_org_Mouse

217688

TTG...

LCH...

TTG

Intronic
sORF
InCDS
Overlapping

Brain, E14, MEF,
NSC, R1E, v6-5,
3T3

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
4178	ENSMUST00000208193	Ccnd1-203	retained_intron	Ribo-seq		8	sORFs_org_Mouse
5011	ENSMUST00000093962	Ccnd1-201	protein_coding	Ribo-seq		2	sORFs_org_Mouse

212242

CTG...

LGA...

CTG

Intronic
sORF
Alternative
InCDS
Overlapping

Brain, MEF, NSC,
3T3

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
4178	ENSMUST00000208193	Ccnd1-203	retained_intron	Ribo-seq	moderate	3	sORFs_org_Mouse
5011	ENSMUST00000093962	Ccnd1-201	protein_coding	Ribo-seq	moderate	3	sORFs_org_Mouse

74051

102

GTG...

VAS...

GTG

Intronic
sORF

BMDC, E14, MEF,
NSC, v6-5, Brain,
Liver, R1E, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
1096931	ENSMUST00000135985	Ccnd1-202	retained_intron	Ribo-seq		7	sORFs_org_Mouse
4178	ENSMUST00000208193	Ccnd1-203	retained_intron	Ribo-seq		5	sORFs_org_Mouse

73289

195

GTG...

VET...

GTG

Intronic
sORF

Brain, E14, Liver,
MEF, NSC, R1E,
Testis, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
4178	ENSMUST00000208193	Ccnd1-203	retained_intron	Ribo-seq		10	sORFs_org_Mouse

5010

CTG...

LTT...

CTG

Alternative
InCDS
Overlapping
sORF

3T3, BMDC, Brain,
MEF, R1E, Skin_tumor,
v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
5011	ENSMUST00000093962	Ccnd1-201	protein_coding	Ribo-seq		12	sORFs_org_Mouse

600714

ATG...

MHR...

ATG

Alternative
InCDS
Overlapping
sORF

3T3, Brain, E14,
Liver, MEF, NSC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
5011	ENSMUST00000093962	Ccnd1-201	protein_coding	Ribo-seq		7	sORFs_org_Mouse

74289

144

GTG...

VLR...

GTG

Intronic
sORF

Brain, E14, Liver,
MEF, NSC, R1E,
Testis, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
4178	ENSMUST00000208193	Ccnd1-203	retained_intron	Ribo-seq		9	sORFs_org_Mouse

4177

126

CTG...

LLG...

CTG

Intronic
sORF

Brain, Liver, MEF,
R1E, Skin_tumor, Testis,
BMDC, E14, NSC,
v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
4178	ENSMUST00000208193	Ccnd1-203	retained_intron	Ribo-seq		6	sORFs_org_Mouse
1096931	ENSMUST00000135985	Ccnd1-202	retained_intron	Ribo-seq		5	sORFs_org_Mouse

74563

174

CTG...

LDR...

CTG

Intronic
sORF

E14, MEF, NSC,
v6-5, Brain, Liver,
R1E, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
1096931	ENSMUST00000135985	Ccnd1-202	retained_intron	Ribo-seq		4	sORFs_org_Mouse
4178	ENSMUST00000208193	Ccnd1-203	retained_intron	Ribo-seq		5	sORFs_org_Mouse

599159

ATG...

MRT...

ATG

Alternative
InCDS
Overlapping
sORF

3T3, BMDC, Brain,
Glioma, Liver, MEF,
MESC, NSC, R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
5011	ENSMUST00000093962	Ccnd1-201	protein_coding	Ribo-seq		9	sORFs_org_Mouse Johnstone2016

72339

141

CTG...

LRA...

CTG

Intronic
sORF

Brain, E14, Liver,
MEF, NSC, R1E,
Testis, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
4178	ENSMUST00000208193	Ccnd1-203	retained_intron	Ribo-seq		9	sORFs_org_Mouse

230578

195

CTG...

LTP...

CTG

Alternative
InCDS
Overlapping
sORF

3T3, Brain, Liver,
MEF, NSC, R1E,
v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
5011	ENSMUST00000093962	Ccnd1-201	protein_coding	Ribo-seq		12	sORFs_org_Mouse

1517040

CTG...

LHA...

CTG

Alternative
Downstream
Overlapping
sORF

NSC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
5011	ENSMUST00000093962	Ccnd1-201	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse

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