Gene NCBI:12321 | MetamORF

Gene

ID CARD

NCBI:12321

Aliases

9530075H20Rik
Calu, ENSMUSG00000029767, MGI:1097158
NCBI:12321, OFF:Calu

Chromosome

Transcripts

70 ORFs
7 known transcripts
161 ORF to known transcript associations

MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

ORFs

Display all the transcripts related to the entry.

68558

ENSMUST00000173694

Calu-208

protein_coding

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
68588	69	TTG ...	LSL ...	Ribo-seq	TTG		8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, NSC, Testis, v6-5
68557	57	ATG ...	MNS ...	Ribo-seq	ATG		8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, NSC, Testis, v6-5
525440	60	ATG ...	MTM ...	Ribo-seq	ATG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, NSC, v6-5
1740877	75	TTG ...	LCA ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative sORF Upstream	MEF
3022	48	ATG ...	MMP ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, Testis
579335	54	CTG ...	LGE ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative sORF Upstream	MEF
526250	54	ATG ...	MQR ...	Ribo-seq	ATG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, NSC, v6-5
2882	105	ATG ...	MSL ...	Ribo-seq	ATG	moderate	6	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	E14, Glioma, Liver, MEF, MESC, Testis, v6-5
195467	75	ATG ...	MML ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF
3130	60	TTG ...	LTM ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, Testis
2874	72	ATG ...	MLR ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
70725	87	ATG ...	MTT ...	Ribo-seq	ATG		8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, NSC, Testis, v6-5
206079	45	ATG ...	MPS ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
201595	48	ATG ...	MIY ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	NSC
2864	54	ATG ...	MTM ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, Testis
203948	84	ATG ...	MAS ...	Ribo-seq	ATG	strong	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, NSC
204781	69	GTG ...	VPV ...	Ribo-seq	GTG	weak	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF
69801	75	ATG ...	MGL ...	Ribo-seq	ATG		8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, NSC, Testis, v6-5
69459	63	CTG ...	LWM ...	Ribo-seq	CTG		8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, NSC, Testis, v6-5
198996	57	GTG ...	VHS ...	Ribo-seq	GTG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF

3476

ENSMUST00000172607

Calu-205

protein_coding

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
3556	141	ATG ...	MTM ...	Ribo-seq	ATG		7	sORFs_org_Mouse	sORF	B_cell, E14, MEF, NSC, Skin_tumor, v6-5
3475	192	ATG ...	MGR ...	Ribo-seq	ATG		8	sORFs_org_Mouse	sORF	B_cell, E14, MEF, Neutrophil, NSC, Skin_tumor, v6-5
3431	135	ATG ...	MQR ...	Ribo-seq	ATG		6	sORFs_org_Mouse	sORF	B_cell, E14, MEF, NSC, v6-5
201595	48	ATG ...	MIY ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	sORF	BMDC
908107	84	CTG ...	LSC ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF	BMDC

203441

ENSMUST00000174096

Calu-209

nonsense_mediated_decay

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
192526	30	CTG ...	LMM ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	NMD sORF	B_cell
838355	198	GTG ...	VTE ...	Ribo-seq	GTG		1	sORFs_org_Mouse	NMD sORF	B_cell
837099	219	CTG ...	LRQ ...	Ribo-seq	CTG		2	sORFs_org_Mouse	NMD sORF	B_cell, Brain
525485	33	ATG ...	MMG ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	NMD sORF	B_cell
837801	174	TTG ...	LSK ...	Ribo-seq	TTG		2	sORFs_org_Mouse	NMD sORF	B_cell, Brain
527428	30	ATG ...	MGM ...	Ribo-seq	ATG	strong	1	sORFs_org_Mouse	NMD sORF	B_cell
525066	69	TTG ...	LGA ...	Ribo-seq	TTG		3	sORFs_org_Mouse	NMD sORF	B_cell, Brain, Spleen_B_cell
835928	192	CTG ...	LCT ...	Ribo-seq	CTG		2	sORFs_org_Mouse	NMD sORF	B_cell, Brain
525931	48	GTG ...	VTC ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	NMD sORF	B_cell
198996	57	GTG ...	VHS ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	NMD sORF	B_cell, Brain
527697	60	ATG ...	MRM ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	NMD sORF	Brain
836701	198	CTG ...	LSL ...	Ribo-seq	CTG		2	sORFs_org_Mouse	NMD sORF	B_cell, Brain
191942	57	GTG ...	VGS ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	NMD sORF	Brain
205856	42	ATG ...	MIQ ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	NMD sORF	B_cell
835830	36	CTG ...	LTP ...	Ribo-seq	CTG		2	sORFs_org_Mouse	NMD sORF	B_cell, Brain
2882	105	ATG ...	MSL ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	NMD sORF	Brain
526250	54	ATG ...	MQR ...	Ribo-seq	ATG		2	sORFs_org_Mouse	NMD sORF	B_cell, Brain
836179	183	CTG ...	LKS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	NMD sORF	B_cell
3132	111	ATG ...	MGR ...	Ribo-seq	ATG		2	sORFs_org_Mouse	NMD sORF	B_cell, Brain
525440	60	ATG ...	MTM ...	Ribo-seq	ATG		2	sORFs_org_Mouse	NMD sORF	B_cell, Brain
69801	75	ATG ...	MGL ...	Ribo-seq	ATG	strong	1	sORFs_org_Mouse	NMD sORF	Brain
204781	69	GTG ...	VPV ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	NMD sORF	B_cell, Brain
196849	42	ATG ...	MSG ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	NMD sORF	B_cell
579990	54	ATG ...	MAS ...	Ribo-seq	ATG	strong	1	sORFs_org_Mouse	NMD sORF	Brain

193270

ENSMUST00000031779

Calu-201

protein_coding

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1248068	39	ATC ...	IQI ...	Ribo-seq	ATC	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
906667	123	ATA ...	IRT ...	Ribo-seq	ATA		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
2882	105	ATG ...	MSL ...	Ribo-seq	ATG	moderate	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, Liver, Spleen_B_cell
200489	39	TTG ...	LWA ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
1249288	129	AGG ...	RQK ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
910670	204	ATA ...	IRT ...	Ribo-seq	ATA		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
3130	60	TTG ...	LTM ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Liver, Spleen_B_cell
1243823	33	ATC ...	IWS ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
203948	84	ATG ...	MAS ...	Ribo-seq	ATG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
1246273	42	AAG ...	KPG ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
527428	30	ATG ...	MGM ...	Ribo-seq	ATG	strong	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, Spleen_B_cell
3132	111	ATG ...	MGR ...	Ribo-seq	ATG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, Liver, Spleen_B_cell
578740	51	CTG ...	LDS ...	Ribo-seq	CTG	strong	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14
205856	42	ATG ...	MIQ ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Liver
204781	69	GTG ...	VPV ...	Ribo-seq	GTG	weak	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Liver, Spleen_B_cell
525931	48	GTG ...	VTC ...	Ribo-seq	GTG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, Spleen_B_cell
68557	57	ATG ...	MNS ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
1248084	90	GTG ...	VEL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	sORF Upstream	E14
201595	48	ATG ...	MIY ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14
579335	54	CTG ...	LGE ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative sORF Upstream	3T3
207128	111	CTG ...	LGE ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3
68588	69	TTG ...	LSL ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain
579990	54	ATG ...	MAS ...	Ribo-seq	ATG	strong	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14
2874	72	ATG ...	MLR ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Liver, Spleen_B_cell
525440	60	ATG ...	MTM ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Liver, Spleen_B_cell
3022	48	ATG ...	MMP ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Liver, Spleen_B_cell
1242950	93	AAG ...	KRP ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1248582	114	ATC ...	IWS ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
3431	135	ATG ...	MQR ...	Ribo-seq	ATG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, MEF, Spleen_B_cell
1249535	165	AAG ...	KTG ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
3475	192	ATG ...	MGR ...	Ribo-seq	ATG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, MEF, Spleen_B_cell
69801	75	ATG ...	MGL ...	Ribo-seq	ATG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
2864	54	ATG ...	MTM ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Liver, Spleen_B_cell
203199	57	TTG ...	LPQ ...	Ribo-seq	TTG	weak	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Liver, Spleen_B_cell
1243228	45	AAG ...	KSS ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
526250	54	ATG ...	MQR ...	Ribo-seq	ATG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, Liver, MEF, Spleen_B_cell
1245270	48	AGG ...	RQK ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1249036	174	AAG ...	KRP ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
525485	33	ATG ...	MMG ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Spleen_B_cell
192526	30	CTG ...	LMM ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, Liver
585778	132	TTG ...	LCA ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3
1248211	48	AAG ...	KAG ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1249155	123	AAG ...	KPG ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
69459	63	CTG ...	LWM ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain
526187	45	GTG ...	VGE ...	Ribo-seq	GTG	strong	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, Spleen_B_cell
191992	60	TTG ...	LST ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
70725	87	ATG ...	MTT ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain
195535	33	TTG ...	LHK ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain
206079	45	ATG ...	MPS ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Liver, Spleen_B_cell
527697	60	ATG ...	MRM ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Spleen_B_cell
3556	141	ATG ...	MTM ...	Ribo-seq	ATG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, MEF, Spleen_B_cell
196849	42	ATG ...	MSG ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, Spleen_B_cell
198996	57	GTG ...	VHS ...	Ribo-seq	GTG	weak	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Liver, Spleen_B_cell
1248501	63	ATT ...	ILT ...	Ribo-seq	ATT	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
195467	75	ATG ...	MML ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Liver, Spleen_B_cell
1243036	51	ATT ...	ICG ...	Ribo-seq	ATT	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
197882	33	GTG ...	VQK ...	Ribo-seq	GTG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Liver, Spleen_B_cell
1245440	84	AAG ...	KTG ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14

2865

ENSMUST00000090481

Calu-202

protein_coding

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
195467	75	ATG ...	MML ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, R1E
526187	45	GTG ...	VGE ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	R1E
3132	111	ATG ...	MGR ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	R1E
201595	48	ATG ...	MIY ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	R1E
203199	57	TTG ...	LPQ ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	R1E
910670	204	ATA ...	IRT ...	Ribo-seq	ATA		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
198996	57	GTG ...	VHS ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	R1E
3556	141	ATG ...	MTM ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, R1E
206079	45	ATG ...	MPS ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	R1E
525440	60	ATG ...	MTM ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	R1E
192526	30	CTG ...	LMM ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	R1E
200489	39	TTG ...	LWA ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	R1E
527428	30	ATG ...	MGM ...	Ribo-seq	ATG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	R1E
3130	60	TTG ...	LTM ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	R1E, Skin_tumor
205856	42	ATG ...	MIQ ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	R1E
525485	33	ATG ...	MMG ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	R1E
197882	33	GTG ...	VQK ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	R1E
203948	84	ATG ...	MAS ...	Ribo-seq	ATG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	R1E
907184	60	ACG ...	TPR ...	Ribo-seq	ACG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
526250	54	ATG ...	MQR ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	R1E
191992	60	TTG ...	LST ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	R1E
2882	105	ATG ...	MSL ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, R1E, Skin_tumor
906667	123	ATA ...	IRT ...	Ribo-seq	ATA		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
3022	48	ATG ...	MMP ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	R1E, Skin_tumor
204781	69	GTG ...	VPV ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	R1E
525931	48	GTG ...	VTC ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	R1E
3475	192	ATG ...	MGR ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, R1E
2874	72	ATG ...	MLR ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	R1E, Skin_tumor
3431	135	ATG ...	MQR ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, R1E, Skin_tumor
2864	54	ATG ...	MTM ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	R1E, Skin_tumor

3133

ENSMUST00000173216

Calu-207

protein_coding

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
3132	111	ATG ...	MGR ...	Ribo-seq	ATG		2	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, Skin_tumor
526250	54	ATG ...	MQR ...	Ribo-seq	ATG		1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
525440	60	ATG ...	MTM ...	Ribo-seq	ATG		1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
579335	54	CTG ...	LGE ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF Upstream	B_cell

191943

ENSMUST00000172974

Calu-206

protein_coding

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
197882	33	GTG ...	VQK ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
203199	57	TTG ...	LPQ ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, v6-5
3130	60	TTG ...	LTM ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, C2C12
204781	69	GTG ...	VPV ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
2874	72	ATG ...	MLR ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, C2C12
201595	48	ATG ...	MIY ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	Brain, v6-5
206079	45	ATG ...	MPS ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
207128	111	CTG ...	LGE ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	Brain
3022	48	ATG ...	MMP ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
198996	57	GTG ...	VHS ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
191992	60	TTG ...	LST ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	Brain, v6-5
196849	42	ATG ...	MSG ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, v6-5
191942	57	GTG ...	VGS ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Downstream sORF	Brain
2864	54	ATG ...	MTM ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
192526	30	CTG ...	LMM ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
200489	39	TTG ...	LWA ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	Alternative Downstream sORF	Brain, v6-5
203948	84	ATG ...	MAS ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	Brain, v6-5
195467	75	ATG ...	MML ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, v6-5
205856	42	ATG ...	MIQ ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
2882	105	ATG ...	MSL ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, C2C12

3128434

UNKNOWN_TRANSCRIPT

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
3475	192	ATG ...	MGR ...	Predicted	ATG		1	Samandi2017	sORF
2882	105	ATG ...	MSL ...	Predicted	ATG		1	Samandi2017	sORF

ORFs

70 ORFs
7 known transcripts
161 ORF to known transcript associations

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF Length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Start codon

The start codon sequence of the ORF.

ORF annotations

A comma-separated list of all the annotations computed by our algorithm for the ORF. This list includes the annotations computed for the ORF for all transcripts. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of all the cell types in which the ORF has already been identified.

Transcripts

Display all the transcripts related to the entry.

68588

TTG...

LSL...

TTG

Alternative
InCDS
Overlapping
sORF

E14, MEF, NSC,
Testis, v6-5, 3T3,
Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
68558	ENSMUST00000173694	Calu-208	protein_coding	Ribo-seq		8	sORFs_org_Mouse
193270	ENSMUST00000031779	Calu-201	protein_coding	Ribo-seq	moderate	2	sORFs_org_Mouse

3556

141

ATG...

MTM...

ATG

sORF
Alternative
InCDS
Overlapping

B_cell, E14, MEF,
NSC, Skin_tumor, v6-5,
BMDC, R1E, 3T3,
Brain, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
3476	ENSMUST00000172607	Calu-205	protein_coding	Ribo-seq		7	sORFs_org_Mouse
2865	ENSMUST00000090481	Calu-202	protein_coding	Ribo-seq		2	sORFs_org_Mouse
193270	ENSMUST00000031779	Calu-201	protein_coding	Ribo-seq		5	sORFs_org_Mouse

192526

CTG...

LMM...

CTG

NMD
sORF
Alternative
InCDS
Overlapping

B_cell, R1E, Brain,
3T3, E14, Liver

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
203441	ENSMUST00000174096	Calu-209	nonsense_mediated_decay	Ribo-seq	moderate	1	sORFs_org_Mouse
2865	ENSMUST00000090481	Calu-202	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse
191943	ENSMUST00000172974	Calu-206	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse
193270	ENSMUST00000031779	Calu-201	protein_coding	Ribo-seq	moderate	3	sORFs_org_Mouse

1248068

ATC...

IQI...

ATC

Alternative
InCDS
Overlapping
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
193270	ENSMUST00000031779	Calu-201	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse

68557

ATG...

MNS...

ATG

Alternative
InCDS
Overlapping
sORF

E14, MEF, NSC,
Testis, v6-5, 3T3

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
68558	ENSMUST00000173694	Calu-208	protein_coding	Ribo-seq		8	sORFs_org_Mouse
193270	ENSMUST00000031779	Calu-201	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse

906667

123

ATA...

IRT...

ATA

Alternative
InCDS
Overlapping
sORF

E14, BMDC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
193270	ENSMUST00000031779	Calu-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse
2865	ENSMUST00000090481	Calu-202	protein_coding	Ribo-seq		1	sORFs_org_Mouse

2882

105

ATG...

MSL...

ATG

Alternative
InCDS
Overlapping
sORF
NMD

3T3, E14, Liver,
Spleen_B_cell, Glioma, MEF,
MESC, Testis, v6-5,
Brain, BMDC, R1E,
Skin_tumor, C2C12

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
193270	ENSMUST00000031779	Calu-201	protein_coding	Ribo-seq	moderate	4	sORFs_org_Mouse
68558	ENSMUST00000173694	Calu-208	protein_coding	Ribo-seq	moderate	6	sORFs_org_Mouse Johnstone2016
203441	ENSMUST00000174096	Calu-209	nonsense_mediated_decay	Ribo-seq	moderate	1	sORFs_org_Mouse
2865	ENSMUST00000090481	Calu-202	protein_coding	Ribo-seq	moderate	3	sORFs_org_Mouse
3128434	UNKNOWN_TRANSCRIPT			Predicted		1	Samandi2017
191943	ENSMUST00000172974	Calu-206	protein_coding	Ribo-seq	moderate	2	sORFs_org_Mouse

200489

TTG...

LWA...

TTG

Alternative
InCDS
Overlapping
sORF
Downstream

3T3, R1E, Brain,
v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
193270	ENSMUST00000031779	Calu-201	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse
2865	ENSMUST00000090481	Calu-202	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse
191943	ENSMUST00000172974	Calu-206	protein_coding	Ribo-seq	weak	2	sORFs_org_Mouse

1249288

129

AGG...

RQK...

AGG

Alternative
InCDS
Overlapping
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
193270	ENSMUST00000031779	Calu-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse

195467

ATG...

MML...

ATG

Alternative
InCDS
Overlapping
sORF

BMDC, R1E, E14,
MEF, Brain, v6-5,
3T3, Liver, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
2865	ENSMUST00000090481	Calu-202	protein_coding	Ribo-seq	moderate	2	sORFs_org_Mouse
68558	ENSMUST00000173694	Calu-208	protein_coding	Ribo-seq	moderate	3	sORFs_org_Mouse
191943	ENSMUST00000172974	Calu-206	protein_coding	Ribo-seq	moderate	2	sORFs_org_Mouse
193270	ENSMUST00000031779	Calu-201	protein_coding	Ribo-seq	moderate	3	sORFs_org_Mouse

526187

GTG...

VGE...

GTG

Alternative
InCDS
Overlapping
sORF

R1E, 3T3, E14,
Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
2865	ENSMUST00000090481	Calu-202	protein_coding	Ribo-seq	strong	1	sORFs_org_Mouse
193270	ENSMUST00000031779	Calu-201	protein_coding	Ribo-seq	strong	3	sORFs_org_Mouse

838355

198

GTG...

VTE...

GTG

NMD
sORF

B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
203441	ENSMUST00000174096	Calu-209	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

3132

111

ATG...

MGR...

ATG

Alternative
InCDS
Overlapping
sORF
NMD

R1E, BMDC, Skin_tumor,
3T3, E14, Liver,
Spleen_B_cell, B_cell, Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
2865	ENSMUST00000090481	Calu-202	protein_coding	Ribo-seq		1	sORFs_org_Mouse
3133	ENSMUST00000173216	Calu-207	protein_coding	Ribo-seq		2	sORFs_org_Mouse
193270	ENSMUST00000031779	Calu-201	protein_coding	Ribo-seq		4	sORFs_org_Mouse
203441	ENSMUST00000174096	Calu-209	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse

525440

ATG...

MTM...

ATG

Alternative
InCDS
Overlapping
sORF
NMD

E14, MEF, NSC,
v6-5, R1E, 3T3,
Liver, Spleen_B_cell, BMDC,
B_cell, Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
68558	ENSMUST00000173694	Calu-208	protein_coding	Ribo-seq		6	sORFs_org_Mouse
2865	ENSMUST00000090481	Calu-202	protein_coding	Ribo-seq		1	sORFs_org_Mouse
193270	ENSMUST00000031779	Calu-201	protein_coding	Ribo-seq		3	sORFs_org_Mouse
3133	ENSMUST00000173216	Calu-207	protein_coding	Ribo-seq		1	sORFs_org_Mouse
203441	ENSMUST00000174096	Calu-209	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse

201595

ATG...

MIY...

ATG

Alternative
InCDS
Overlapping
sORF
Downstream

R1E, Brain, v6-5,
3T3, E14, BMDC,
NSC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
2865	ENSMUST00000090481	Calu-202	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse
191943	ENSMUST00000172974	Calu-206	protein_coding	Ribo-seq	moderate	2	sORFs_org_Mouse
193270	ENSMUST00000031779	Calu-201	protein_coding	Ribo-seq	moderate	2	sORFs_org_Mouse
3476	ENSMUST00000172607	Calu-205	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse
68558	ENSMUST00000173694	Calu-208	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse

910670

204

ATA...

IRT...

ATA

Alternative
InCDS
Overlapping
sORF

E14, BMDC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
193270	ENSMUST00000031779	Calu-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse
2865	ENSMUST00000090481	Calu-202	protein_coding	Ribo-seq		1	sORFs_org_Mouse

197882

GTG...

VQK...

GTG

Alternative
InCDS
Overlapping
sORF

Brain, R1E, 3T3,
Liver, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
191943	ENSMUST00000172974	Calu-206	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse
2865	ENSMUST00000090481	Calu-202	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse
193270	ENSMUST00000031779	Calu-201	protein_coding	Ribo-seq	weak	3	sORFs_org_Mouse

203199

TTG...

LPQ...

TTG

Alternative
InCDS
Overlapping
sORF

Brain, v6-5, R1E,
3T3, Liver, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
191943	ENSMUST00000172974	Calu-206	protein_coding	Ribo-seq	weak	2	sORFs_org_Mouse
2865	ENSMUST00000090481	Calu-202	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse
193270	ENSMUST00000031779	Calu-201	protein_coding	Ribo-seq	weak	4	sORFs_org_Mouse

837099

219

CTG...

LRQ...

CTG

NMD
sORF

B_cell, Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
203441	ENSMUST00000174096	Calu-209	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse

3130

TTG...

LTM...

TTG

Alternative
InCDS
Overlapping
sORF

Brain, C2C12, 3T3,
Liver, Spleen_B_cell, R1E,
Skin_tumor, MEF, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
191943	ENSMUST00000172974	Calu-206	protein_coding	Ribo-seq	moderate	2	sORFs_org_Mouse
193270	ENSMUST00000031779	Calu-201	protein_coding	Ribo-seq	moderate	3	sORFs_org_Mouse
2865	ENSMUST00000090481	Calu-202	protein_coding	Ribo-seq	moderate	2	sORFs_org_Mouse
68558	ENSMUST00000173694	Calu-208	protein_coding	Ribo-seq	moderate	3	sORFs_org_Mouse

204781

GTG...

VPV...

GTG

Alternative
InCDS
Overlapping
sORF
NMD

Brain, 3T3, Liver,
Spleen_B_cell, R1E, E14,
MEF, B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
191943	ENSMUST00000172974	Calu-206	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse
193270	ENSMUST00000031779	Calu-201	protein_coding	Ribo-seq	weak	4	sORFs_org_Mouse
2865	ENSMUST00000090481	Calu-202	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse
68558	ENSMUST00000173694	Calu-208	protein_coding	Ribo-seq	weak	4	sORFs_org_Mouse
203441	ENSMUST00000174096	Calu-209	nonsense_mediated_decay	Ribo-seq	weak	2	sORFs_org_Mouse

2874

ATG...

MLR...

ATG

Alternative
InCDS
Overlapping
sORF

Brain, C2C12, 3T3,
Liver, Spleen_B_cell, MEF,
R1E, Skin_tumor

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
191943	ENSMUST00000172974	Calu-206	protein_coding	Ribo-seq	moderate	2	sORFs_org_Mouse
193270	ENSMUST00000031779	Calu-201	protein_coding	Ribo-seq	moderate	3	sORFs_org_Mouse
68558	ENSMUST00000173694	Calu-208	protein_coding	Ribo-seq	moderate	2	sORFs_org_Mouse
2865	ENSMUST00000090481	Calu-202	protein_coding	Ribo-seq	moderate	2	sORFs_org_Mouse

525485

ATG...

MMG...

ATG

NMD
sORF
Alternative
InCDS
Overlapping

B_cell, R1E, 3T3,
Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
203441	ENSMUST00000174096	Calu-209	nonsense_mediated_decay	Ribo-seq	moderate	1	sORFs_org_Mouse
2865	ENSMUST00000090481	Calu-202	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse
193270	ENSMUST00000031779	Calu-201	protein_coding	Ribo-seq	moderate	2	sORFs_org_Mouse

1243823

ATC...

IWS...

ATC

Alternative
InCDS
Overlapping
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
193270	ENSMUST00000031779	Calu-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse

203948

ATG...

MAS...

ATG

Alternative
InCDS
Overlapping
sORF
Downstream

3T3, R1E, MEF,
NSC, Brain, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
193270	ENSMUST00000031779	Calu-201	protein_coding	Ribo-seq	strong	1	sORFs_org_Mouse
2865	ENSMUST00000090481	Calu-202	protein_coding	Ribo-seq	strong	1	sORFs_org_Mouse
68558	ENSMUST00000173694	Calu-208	protein_coding	Ribo-seq	strong	2	sORFs_org_Mouse
191943	ENSMUST00000172974	Calu-206	protein_coding	Ribo-seq	moderate	2	sORFs_org_Mouse

206079

ATG...

MPS...

ATG

Alternative
InCDS
Overlapping
sORF

Brain, R1E, MEF,
3T3, Liver, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
191943	ENSMUST00000172974	Calu-206	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse
2865	ENSMUST00000090481	Calu-202	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse
68558	ENSMUST00000173694	Calu-208	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse
193270	ENSMUST00000031779	Calu-201	protein_coding	Ribo-seq	moderate	3	sORFs_org_Mouse

1246273

AAG...

KPG...

AAG

Alternative
InCDS
Overlapping
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
193270	ENSMUST00000031779	Calu-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse

527428

ATG...

MGM...

ATG

Alternative
InCDS
Overlapping
sORF
NMD

3T3, E14, Spleen_B_cell,
B_cell, R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
193270	ENSMUST00000031779	Calu-201	protein_coding	Ribo-seq	strong	3	sORFs_org_Mouse
203441	ENSMUST00000174096	Calu-209	nonsense_mediated_decay	Ribo-seq	strong	1	sORFs_org_Mouse
2865	ENSMUST00000090481	Calu-202	protein_coding	Ribo-seq	strong	1	sORFs_org_Mouse

198996

GTG...

VHS...

GTG

Alternative
InCDS
Overlapping
sORF
NMD

R1E, Brain, B_cell,
3T3, Liver, Spleen_B_cell,
E14, MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
2865	ENSMUST00000090481	Calu-202	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse
191943	ENSMUST00000172974	Calu-206	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse
203441	ENSMUST00000174096	Calu-209	nonsense_mediated_decay	Ribo-seq	weak	2	sORFs_org_Mouse
193270	ENSMUST00000031779	Calu-201	protein_coding	Ribo-seq	weak	4	sORFs_org_Mouse
68558	ENSMUST00000173694	Calu-208	protein_coding	Ribo-seq	weak	3	sORFs_org_Mouse

578740

CTG...

LDS...

CTG

Alternative
InCDS
Overlapping
sORF

3T3, E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
193270	ENSMUST00000031779	Calu-201	protein_coding	Ribo-seq	strong	2	sORFs_org_Mouse

205856

ATG...

MIQ...

ATG

Alternative
InCDS
Overlapping
sORF
NMD

3T3, Liver, R1E,
B_cell, Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
193270	ENSMUST00000031779	Calu-201	protein_coding	Ribo-seq	weak	2	sORFs_org_Mouse
2865	ENSMUST00000090481	Calu-202	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse
203441	ENSMUST00000174096	Calu-209	nonsense_mediated_decay	Ribo-seq	weak	1	sORFs_org_Mouse
191943	ENSMUST00000172974	Calu-206	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse

207128

111

CTG...

LGE...

CTG

Alternative
Overlapping
sORF
Upstream

Brain, 3T3

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
191943	ENSMUST00000172974	Calu-206	protein_coding	Ribo-seq		1	sORFs_org_Mouse
193270	ENSMUST00000031779	Calu-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse

526250

ATG...

MQR...

ATG

InCDS
Overlapping
sORF
Alternative
NMD

BMDC, E14, MEF,
NSC, v6-5, B_cell,
Brain, R1E, 3T3,
Liver, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
3133	ENSMUST00000173216	Calu-207	protein_coding	Ribo-seq		1	sORFs_org_Mouse
68558	ENSMUST00000173694	Calu-208	protein_coding	Ribo-seq		6	sORFs_org_Mouse
203441	ENSMUST00000174096	Calu-209	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse
2865	ENSMUST00000090481	Calu-202	protein_coding	Ribo-seq		1	sORFs_org_Mouse
193270	ENSMUST00000031779	Calu-201	protein_coding	Ribo-seq		5	sORFs_org_Mouse

525931

GTG...

VTC...

GTG

Alternative
InCDS
Overlapping
sORF
NMD

3T3, E14, Spleen_B_cell,
B_cell, R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
193270	ENSMUST00000031779	Calu-201	protein_coding	Ribo-seq	weak	3	sORFs_org_Mouse
203441	ENSMUST00000174096	Calu-209	nonsense_mediated_decay	Ribo-seq	weak	1	sORFs_org_Mouse
2865	ENSMUST00000090481	Calu-202	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse

1740877

TTG...

LCA...

TTG

Alternative
sORF
Upstream

MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
68558	ENSMUST00000173694	Calu-208	protein_coding	Ribo-seq		1	sORFs_org_Mouse

1248084

GTG...

VEL...

GTG

sORF
Upstream

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
193270	ENSMUST00000031779	Calu-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse

3022

ATG...

MMP...

ATG

Alternative
InCDS
Overlapping
sORF

MEF, Testis, Brain,
3T3, Liver, Spleen_B_cell,
R1E, Skin_tumor

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
68558	ENSMUST00000173694	Calu-208	protein_coding	Ribo-seq	moderate	2	sORFs_org_Mouse
191943	ENSMUST00000172974	Calu-206	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse
193270	ENSMUST00000031779	Calu-201	protein_coding	Ribo-seq	moderate	3	sORFs_org_Mouse
2865	ENSMUST00000090481	Calu-202	protein_coding	Ribo-seq	moderate	2	sORFs_org_Mouse

837801

174

TTG...

LSK...

TTG

NMD
sORF

B_cell, Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
203441	ENSMUST00000174096	Calu-209	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse

525066

TTG...

LGA...

TTG

NMD
sORF

B_cell, Brain, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
203441	ENSMUST00000174096	Calu-209	nonsense_mediated_decay	Ribo-seq		3	sORFs_org_Mouse

579335

CTG...

LGE...

CTG

Alternative
sORF
Upstream

3T3, MEF, B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
193270	ENSMUST00000031779	Calu-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse
68558	ENSMUST00000173694	Calu-208	protein_coding	Ribo-seq		3	sORFs_org_Mouse
3133	ENSMUST00000173216	Calu-207	protein_coding	Ribo-seq		1	sORFs_org_Mouse

3475

192

ATG...

MGR...

ATG

sORF
Alternative
InCDS
Overlapping

B_cell, E14,
MEF, Neutrophil, NSC,
Skin_tumor, v6-5, 3T3,
Brain, Spleen_B_cell, BMDC,
R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
3128434	UNKNOWN_TRANSCRIPT			Predicted		1	Samandi2017
3476	ENSMUST00000172607	Calu-205	protein_coding	Ribo-seq		8	sORFs_org_Mouse
193270	ENSMUST00000031779	Calu-201	protein_coding	Ribo-seq		5	sORFs_org_Mouse
2865	ENSMUST00000090481	Calu-202	protein_coding	Ribo-seq		2	sORFs_org_Mouse

835928

192

CTG...

LCT...

CTG

NMD
sORF

B_cell, Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
203441	ENSMUST00000174096	Calu-209	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse

191992

TTG...

LST...

TTG

Alternative
Downstream
Overlapping
sORF
InCDS

Brain, v6-5, R1E,
3T3

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
191943	ENSMUST00000172974	Calu-206	protein_coding	Ribo-seq	moderate	2	sORFs_org_Mouse
2865	ENSMUST00000090481	Calu-202	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse
193270	ENSMUST00000031779	Calu-201	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse

579990

ATG...

MAS...

ATG

Alternative
InCDS
Overlapping
sORF
NMD

3T3, E14, Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
193270	ENSMUST00000031779	Calu-201	protein_coding	Ribo-seq	strong	2	sORFs_org_Mouse
203441	ENSMUST00000174096	Calu-209	nonsense_mediated_decay	Ribo-seq	strong	1	sORFs_org_Mouse

196849

ATG...

MSG...

ATG

Alternative
InCDS
Overlapping
sORF
NMD

Brain, v6-5, 3T3,
E14, Spleen_B_cell, B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
191943	ENSMUST00000172974	Calu-206	protein_coding	Ribo-seq	moderate	2	sORFs_org_Mouse
193270	ENSMUST00000031779	Calu-201	protein_coding	Ribo-seq	moderate	3	sORFs_org_Mouse
203441	ENSMUST00000174096	Calu-209	nonsense_mediated_decay	Ribo-seq	moderate	1	sORFs_org_Mouse

527697

ATG...

MRM...

ATG

NMD
sORF
Alternative
InCDS
Overlapping

Brain, 3T3, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
203441	ENSMUST00000174096	Calu-209	nonsense_mediated_decay	Ribo-seq	weak	1	sORFs_org_Mouse
193270	ENSMUST00000031779	Calu-201	protein_coding	Ribo-seq	weak	2	sORFs_org_Mouse

191942

GTG...

VGS...

GTG

Downstream
sORF
NMD

Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
191943	ENSMUST00000172974	Calu-206	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse
203441	ENSMUST00000174096	Calu-209	nonsense_mediated_decay	Ribo-seq	moderate	1	sORFs_org_Mouse

2864

ATG...

MTM...

ATG

Alternative
InCDS
Overlapping
sORF

Brain, 3T3, Liver,
Spleen_B_cell, MEF, Testis,
R1E, Skin_tumor

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
191943	ENSMUST00000172974	Calu-206	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse
193270	ENSMUST00000031779	Calu-201	protein_coding	Ribo-seq	moderate	3	sORFs_org_Mouse
68558	ENSMUST00000173694	Calu-208	protein_coding	Ribo-seq	moderate	3	sORFs_org_Mouse
2865	ENSMUST00000090481	Calu-202	protein_coding	Ribo-seq	moderate	2	sORFs_org_Mouse

836701

198

CTG...

LSL...

CTG

NMD
sORF

B_cell, Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
203441	ENSMUST00000174096	Calu-209	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse

1242950

AAG...

KRP...

AAG

Alternative
InCDS
Overlapping
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
193270	ENSMUST00000031779	Calu-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse

1248582

114

ATC...

IWS...

ATC

Alternative
InCDS
Overlapping
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
193270	ENSMUST00000031779	Calu-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse

835830

CTG...

LTP...

CTG

NMD
sORF

B_cell, Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
203441	ENSMUST00000174096	Calu-209	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse

3431

135

ATG...

MQR...

ATG

Alternative
InCDS
Overlapping
sORF

3T3, Brain, E14,
MEF, Spleen_B_cell, B_cell,
NSC, v6-5, BMDC,
R1E, Skin_tumor

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
193270	ENSMUST00000031779	Calu-201	protein_coding	Ribo-seq		6	sORFs_org_Mouse
3476	ENSMUST00000172607	Calu-205	protein_coding	Ribo-seq		6	sORFs_org_Mouse
2865	ENSMUST00000090481	Calu-202	protein_coding	Ribo-seq		3	sORFs_org_Mouse

1249535

165

AAG...

KTG...

AAG

Alternative
InCDS
Overlapping
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
193270	ENSMUST00000031779	Calu-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse

69801

ATG...

MGL...

ATG

Alternative
InCDS
Overlapping
sORF
NMD

3T3, E14, MEF,
NSC, Testis, v6-5,
Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
193270	ENSMUST00000031779	Calu-201	protein_coding	Ribo-seq	strong	1	sORFs_org_Mouse
68558	ENSMUST00000173694	Calu-208	protein_coding	Ribo-seq		8	sORFs_org_Mouse
203441	ENSMUST00000174096	Calu-209	nonsense_mediated_decay	Ribo-seq	strong	1	sORFs_org_Mouse

907184

ACG...

TPR...

ACG

InCDS
Overlapping
sORF

BMDC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
2865	ENSMUST00000090481	Calu-202	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse

70725

ATG...

MTT...

ATG

Alternative
InCDS
Overlapping
sORF

E14, MEF, NSC,
Testis, v6-5, 3T3,
Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
68558	ENSMUST00000173694	Calu-208	protein_coding	Ribo-seq		8	sORFs_org_Mouse
193270	ENSMUST00000031779	Calu-201	protein_coding	Ribo-seq	weak	2	sORFs_org_Mouse

1243228

AAG...

KSS...

AAG

Alternative
InCDS
Overlapping
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
193270	ENSMUST00000031779	Calu-201	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse

1245270

AGG...

RQK...

AGG

Alternative
InCDS
Overlapping
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
193270	ENSMUST00000031779	Calu-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse

836179

183

CTG...

LKS...

CTG

NMD
sORF

B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
203441	ENSMUST00000174096	Calu-209	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

1249036

174

AAG...

KRP...

AAG

Alternative
InCDS
Overlapping
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
193270	ENSMUST00000031779	Calu-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse

585778

132

TTG...

LCA...

TTG

Alternative
Overlapping
sORF
Upstream

3T3

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
193270	ENSMUST00000031779	Calu-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse

1248211

AAG...

KAG...

AAG

Alternative
InCDS
Overlapping
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
193270	ENSMUST00000031779	Calu-201	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse

1249155

123

AAG...

KPG...

AAG

Alternative
InCDS
Overlapping
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
193270	ENSMUST00000031779	Calu-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse

69459

CTG...

LWM...

CTG

Alternative
InCDS
Overlapping
sORF

3T3, Brain, E14,
MEF, NSC, Testis,
v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
193270	ENSMUST00000031779	Calu-201	protein_coding	Ribo-seq	weak	2	sORFs_org_Mouse
68558	ENSMUST00000173694	Calu-208	protein_coding	Ribo-seq		8	sORFs_org_Mouse

195535

TTG...

LHK...

TTG

Alternative
InCDS
Overlapping
sORF

3T3, Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
193270	ENSMUST00000031779	Calu-201	protein_coding	Ribo-seq	moderate	2	sORFs_org_Mouse

1248501

ATT...

ILT...

ATT

Alternative
InCDS
Overlapping
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
193270	ENSMUST00000031779	Calu-201	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse

908107

CTG...

LSC...

CTG

sORF

BMDC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
3476	ENSMUST00000172607	Calu-205	protein_coding	Ribo-seq		1	sORFs_org_Mouse

1243036

ATT...

ICG...

ATT

Alternative
InCDS
Overlapping
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
193270	ENSMUST00000031779	Calu-201	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse

1245440

AAG...

KTG...

AAG

Alternative
InCDS
Overlapping
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
193270	ENSMUST00000031779	Calu-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse

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