Gene NCBI:11950 | MetamORF

Gene

ID CARD

NCBI:11950

Aliases

Atp5f1
Atp5pb, C76477, ENSMUSG00000000563
MGI:1100495, NCBI:11950, OFF:Atp5pb

Chromosome

Transcripts

31 ORFs
6 known transcripts
54 ORF to known transcript associations

MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

ORFs

Display all the transcripts related to the entry.

55228

ENSMUST00000118209

Atp5f1-201

protein_coding

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
55227	30	CTG ...	LLP ...	Ribo-seq	CTG		18	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, NSC, R1E, Spleen_B_cell, Testis, v6-5
1223723	111	AGG ...	RHW ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
821520	120	TTG ...	LCI ...	Ribo-seq	TTG		3	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, Brain
1423726	51	CTG ...	LIS ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	Liver
52668	111	CTG ...	LPL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Overlapping sORF Upstream	Brain
54680	48	CTG ...	LLP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
53866	117	TTG ...	LLL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Overlapping sORF Upstream	Brain
1553695	141	TTG ...	LTL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
1015347	135	TTG ...	LLT ...	Ribo-seq	TTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
128778	33	ATG ...	MCE ...	Ribo-seq	ATG	moderate	7	sORFs_org_Mouse	Alternative sORF Upstream	3T3, Brain, E14, Liver, MEF, R1E, Spleen_B_cell
51943	105	CTG ...	LTG ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Overlapping sORF Upstream	Brain
52868	45	ATG ...	MAP ...	Ribo-seq	ATG		1	sORFs_org_Mouse	InCDS Overlapping sORF	Liver
983552	72	GTG ...	VSE ...	Ribo-seq	GTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	Liver
134241	132	GTG ...	VRA ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Overlapping sORF Upstream	Brain, R1E, Spleen_B_cell

52254

ENSMUST00000143022

Atp5f1-204

retained_intron

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1221991	93	GTG ...	VIK ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Intronic sORF	E14
52868	45	ATG ...	MAP ...	Ribo-seq	ATG	strong	2	sORFs_org_Mouse	Intronic sORF	E14, Testis
1221907	108	AAG ...	KTG ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Intronic sORF	E14
52253	105	TTG ...	LIV ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Testis
1463362	42	CTG ...	LRN ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	BMDC
1221409	102	ATA ...	IVY ...	Ribo-seq	ATA	moderate	1	sORFs_org_Mouse	Intronic sORF	E14

1729384

ENSMUST00000123959

Atp5f1-202

retained_intron

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

53438

CTG ...

LKN ...

Ribo-seq

CTG

weak

sORFs_org_Mouse

MEF

52285

CTG ...

LSR ...

Ribo-seq

CTG

sORFs_org_Mouse

MEF

503327

ENSMUST00000153666

Atp5f1-205

retained_intron

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
983552	72	GTG ...	VSE ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Brain
1463362	42	CTG ...	LRN ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	Brain
52227	48	GTG ...	VVL ...	Ribo-seq	GTG		8	sORFs_org_Mouse	Intronic sORF	B_cell, BMDC, Brain, Liver, R1E, Spleen_B_cell, v6-5
53866	117	TTG ...	LLL ...	Ribo-seq	TTG		6	sORFs_org_Mouse	Intronic sORF	B_cell, Brain, Liver, R1E, Spleen_B_cell
1551597	90	TTG ...	LCI ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	Brain
52668	111	CTG ...	LPL ...	Ribo-seq	CTG		7	sORFs_org_Mouse	Intronic sORF	B_cell, BMDC, Brain, Liver, R1E, Spleen_B_cell
52428	45	GTG ...	VLS ...	Ribo-seq	GTG		8	sORFs_org_Mouse	Intronic sORF	B_cell, BMDC, Brain, Liver, R1E, Spleen_B_cell, v6-5
52285	57	CTG ...	LSR ...	Ribo-seq	CTG		8	sORFs_org_Mouse	Intronic sORF	B_cell, BMDC, Brain, Liver, R1E, Spleen_B_cell, v6-5
51943	105	CTG ...	LTG ...	Ribo-seq	CTG		6	sORFs_org_Mouse	Intronic sORF	B_cell, BMDC, Brain, Liver, Spleen_B_cell
53438	33	CTG ...	LKN ...	Ribo-seq	CTG		8	sORFs_org_Mouse	Intronic sORF	B_cell, BMDC, Brain, Liver, R1E, Spleen_B_cell, v6-5

51944

ENSMUST00000133320

Atp5f1-203

nonsense_mediated_decay

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
53486	39	CTG ...	LLA ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	Testis
134241	132	GTG ...	VRA ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Alternative NMD Overlapping sORF Upstream	Brain, Liver, MEF, NSC
894650	30	ATA ...	IWR ...	Ribo-seq	ATA	moderate	1	sORFs_org_Mouse	Downstream NMD sORF	BMDC
54026	75	ATG ...	MQS ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Alternative Downstream NMD sORF	Neutrophil, NSC, Testis
52868	45	ATG ...	MAP ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Alternative Downstream NMD sORF	MEF, Neutrophil, NSC
54680	48	CTG ...	LLP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Testis
52428	45	GTG ...	VLS ...	Ribo-seq	GTG		6	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Brain, E14, MEF, Neutrophil, NSC, Testis
52253	105	TTG ...	LIV ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	Brain
1222860	48	AGG ...	RHW ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14
53438	33	CTG ...	LKN ...	Ribo-seq	CTG		7	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Brain, E14, MEF, Neutrophil, NSC, Testis
51943	105	CTG ...	LTG ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Alternative NMD Overlapping sORF Upstream	Brain, MEF, Neutrophil, NSC, Testis
52668	111	CTG ...	LPL ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative NMD Overlapping sORF Upstream	MEF, Neutrophil, NSC, Testis
52227	48	GTG ...	VVL ...	Ribo-seq	GTG		8	sORFs_org_Mouse	InCDS NMD Overlapping sORF	BMDC, Brain, E14, MEF, Neutrophil, NSC, Testis
53866	117	TTG ...	LLL ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Alternative NMD Overlapping sORF Upstream	Brain, MEF, NSC, Testis
894599	30	AAG ...	KNA ...	Ribo-seq	AAG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	BMDC
128778	33	ATG ...	MCE ...	Ribo-seq	ATG		1	sORFs_org_Mouse	NMD sORF	BMDC
1463362	42	CTG ...	LRN ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative Downstream NMD sORF	MEF, NSC
52689	45	CTG ...	LPP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Testis
52285	57	CTG ...	LSR ...	Ribo-seq	CTG		8	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Brain, MEF, Neutrophil, NSC, Testis
1223270	123	AAG ...	KRH ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14

820459

ENSMUST00000199311

Atp5f1-206

protein_coding

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
52868	45	ATG ...	MAP ...	Ribo-seq	ATG		2	sORFs_org_Mouse	sORF	Brain, MEF
54026	75	ATG ...	MQS ...	Ribo-seq	ATG		3	sORFs_org_Mouse	sORF	B_cell, Brain

ORFs

31 ORFs
6 known transcripts
54 ORF to known transcript associations

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF Length

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Start codon

The start codon sequence of the ORF.

ORF annotations

A comma-separated list of all the annotations computed by our algorithm for the ORF. This list includes the annotations computed for the ORF for all transcripts. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of all the cell types in which the ORF has already been identified.

Transcripts

Display all the transcripts related to the entry.

55227

CTG...

LLP...

CTG

Alternative
InCDS
Overlapping
sORF

3T3, B_cell, BMDC,
Brain, E14, Liver,
MEF, NSC, R1E,
Spleen_B_cell, Testis, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
55228	ENSMUST00000118209	Atp5f1-201	protein_coding	Ribo-seq		18	sORFs_org_Mouse

1221991

GTG...

VIK...

GTG

Intronic
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
52254	ENSMUST00000143022	Atp5f1-204	retained_intron	Ribo-seq	weak	1	sORFs_org_Mouse

53438

CTG...

LKN...

CTG

Intronic
sORF
InCDS
NMD
Overlapping

MEF, Brain, E14,
Neutrophil, NSC, Testis,
B_cell, BMDC, Liver,
R1E, Spleen_B_cell, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
1729384	ENSMUST00000123959	Atp5f1-202	retained_intron	Ribo-seq	weak	1	sORFs_org_Mouse
51944	ENSMUST00000133320	Atp5f1-203	nonsense_mediated_decay	Ribo-seq		7	sORFs_org_Mouse
503327	ENSMUST00000153666	Atp5f1-205	retained_intron	Ribo-seq		8	sORFs_org_Mouse

52868

ATG...

MAP...

ATG

Intronic
sORF
Alternative
Downstream
NMD
InCDS
Overlapping

E14, Testis, MEF,
Neutrophil, NSC, Brain,
Liver

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
52254	ENSMUST00000143022	Atp5f1-204	retained_intron	Ribo-seq	strong	2	sORFs_org_Mouse
51944	ENSMUST00000133320	Atp5f1-203	nonsense_mediated_decay	Ribo-seq		3	sORFs_org_Mouse
820459	ENSMUST00000199311	Atp5f1-206	protein_coding	Ribo-seq		2	sORFs_org_Mouse
55228	ENSMUST00000118209	Atp5f1-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse

983552

GTG...

VSE...

GTG

Intronic
sORF
InCDS
Overlapping

Brain, Liver

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
503327	ENSMUST00000153666	Atp5f1-205	retained_intron	Ribo-seq		1	sORFs_org_Mouse
55228	ENSMUST00000118209	Atp5f1-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse

53486

CTG...

LLA...

CTG

Alternative
Downstream
NMD
sORF

Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
51944	ENSMUST00000133320	Atp5f1-203	nonsense_mediated_decay	Ribo-seq	moderate	1	sORFs_org_Mouse

1223723

111

AGG...

RHW...

AGG

Alternative
InCDS
Overlapping
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
55228	ENSMUST00000118209	Atp5f1-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse

821520

120

TTG...

LCI...

TTG

InCDS
Overlapping
sORF

B_cell, Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
55228	ENSMUST00000118209	Atp5f1-201	protein_coding	Ribo-seq		3	sORFs_org_Mouse

1423726

CTG...

LIS...

CTG

Alternative
sORF
Upstream

Liver

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
55228	ENSMUST00000118209	Atp5f1-201	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse

134241

132

GTG...

VRA...

GTG

Alternative
NMD
Overlapping
sORF
Upstream

Brain, Liver, MEF,
NSC, R1E, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
51944	ENSMUST00000133320	Atp5f1-203	nonsense_mediated_decay	Ribo-seq		4	sORFs_org_Mouse
55228	ENSMUST00000118209	Atp5f1-201	protein_coding	Ribo-seq		4	sORFs_org_Mouse

894650

ATA...

IWR...

ATA

Downstream
NMD
sORF

BMDC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
51944	ENSMUST00000133320	Atp5f1-203	nonsense_mediated_decay	Ribo-seq	moderate	1	sORFs_org_Mouse

1463362

CTG...

LRN...

CTG

Intronic
sORF
Alternative
Downstream
NMD

Brain, MEF, NSC,
BMDC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
503327	ENSMUST00000153666	Atp5f1-205	retained_intron	Ribo-seq	weak	1	sORFs_org_Mouse
51944	ENSMUST00000133320	Atp5f1-203	nonsense_mediated_decay	Ribo-seq	weak	2	sORFs_org_Mouse
52254	ENSMUST00000143022	Atp5f1-204	retained_intron	Ribo-seq	weak	1	sORFs_org_Mouse

54026

ATG...

MQS...

ATG

Alternative
Downstream
NMD
sORF

Neutrophil, NSC, Testis,
B_cell, Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
51944	ENSMUST00000133320	Atp5f1-203	nonsense_mediated_decay	Ribo-seq		3	sORFs_org_Mouse
820459	ENSMUST00000199311	Atp5f1-206	protein_coding	Ribo-seq		3	sORFs_org_Mouse

52668

111

CTG...

LPL...

CTG

Overlapping
sORF
Upstream
Intronic
Alternative
NMD

Brain, B_cell, BMDC,
Liver, R1E, Spleen_B_cell,
MEF, Neutrophil, NSC,
Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
55228	ENSMUST00000118209	Atp5f1-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse
503327	ENSMUST00000153666	Atp5f1-205	retained_intron	Ribo-seq		7	sORFs_org_Mouse
51944	ENSMUST00000133320	Atp5f1-203	nonsense_mediated_decay	Ribo-seq		4	sORFs_org_Mouse

52227

GTG...

VVL...

GTG

Intronic
sORF
InCDS
NMD
Overlapping

B_cell, BMDC, Brain,
Liver, R1E, Spleen_B_cell,
v6-5, E14, MEF,
Neutrophil, NSC, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
503327	ENSMUST00000153666	Atp5f1-205	retained_intron	Ribo-seq		8	sORFs_org_Mouse
51944	ENSMUST00000133320	Atp5f1-203	nonsense_mediated_decay	Ribo-seq		8	sORFs_org_Mouse

54680

CTG...

LLP...

CTG

Alternative
InCDS
NMD
Overlapping
sORF

Testis, Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
51944	ENSMUST00000133320	Atp5f1-203	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse
55228	ENSMUST00000118209	Atp5f1-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse

53866

117

TTG...

LLL...

TTG

Intronic
sORF
Overlapping
Upstream
Alternative
NMD

B_cell, Brain, Liver,
R1E, Spleen_B_cell, MEF,
NSC, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
503327	ENSMUST00000153666	Atp5f1-205	retained_intron	Ribo-seq		6	sORFs_org_Mouse
55228	ENSMUST00000118209	Atp5f1-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse
51944	ENSMUST00000133320	Atp5f1-203	nonsense_mediated_decay	Ribo-seq		4	sORFs_org_Mouse

52428

GTG...

VLS...

GTG

InCDS
NMD
Overlapping
sORF
Intronic

Brain, E14, MEF,
Neutrophil, NSC, Testis,
B_cell, BMDC, Liver,
R1E, Spleen_B_cell, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
51944	ENSMUST00000133320	Atp5f1-203	nonsense_mediated_decay	Ribo-seq		6	sORFs_org_Mouse
503327	ENSMUST00000153666	Atp5f1-205	retained_intron	Ribo-seq		8	sORFs_org_Mouse

1551597

TTG...

LCI...

TTG

Intronic
sORF

Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
503327	ENSMUST00000153666	Atp5f1-205	retained_intron	Ribo-seq		1	sORFs_org_Mouse

52253

105

TTG...

LIV...

TTG

Alternative
Downstream
NMD
sORF
Intronic

Brain, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
51944	ENSMUST00000133320	Atp5f1-203	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse
52254	ENSMUST00000143022	Atp5f1-204	retained_intron	Ribo-seq	moderate	1	sORFs_org_Mouse

1222860

AGG...

RHW...

AGG

Alternative
Downstream
NMD
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
51944	ENSMUST00000133320	Atp5f1-203	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

1553695

141

TTG...

LTL...

TTG

InCDS
Overlapping
sORF

Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
55228	ENSMUST00000118209	Atp5f1-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse

51943

105

CTG...

LTG...

CTG

Alternative
NMD
Overlapping
sORF
Upstream
Intronic

Brain, MEF, Neutrophil,
NSC, Testis, B_cell,
BMDC, Liver, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
51944	ENSMUST00000133320	Atp5f1-203	nonsense_mediated_decay	Ribo-seq		5	sORFs_org_Mouse
55228	ENSMUST00000118209	Atp5f1-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse
503327	ENSMUST00000153666	Atp5f1-205	retained_intron	Ribo-seq		6	sORFs_org_Mouse

1015347

135

TTG...

LLT...

TTG

InCDS
Overlapping
sORF

Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
55228	ENSMUST00000118209	Atp5f1-201	protein_coding	Ribo-seq		2	sORFs_org_Mouse

894599

AAG...

KNA...

AAG

InCDS
NMD
Overlapping
sORF

BMDC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
51944	ENSMUST00000133320	Atp5f1-203	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

128778

ATG...

MCE...

ATG

Alternative
sORF
Upstream
NMD

3T3, Brain, E14,
Liver, MEF, R1E,
Spleen_B_cell, BMDC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
55228	ENSMUST00000118209	Atp5f1-201	protein_coding	Ribo-seq	moderate	7	sORFs_org_Mouse
51944	ENSMUST00000133320	Atp5f1-203	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

52285

CTG...

LSR...

CTG

Intronic
sORF
InCDS
NMD
Overlapping

MEF, Brain, Neutrophil,
NSC, Testis, B_cell,
BMDC, Liver, R1E,
Spleen_B_cell, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
1729384	ENSMUST00000123959	Atp5f1-202	retained_intron	Ribo-seq		1	sORFs_org_Mouse
51944	ENSMUST00000133320	Atp5f1-203	nonsense_mediated_decay	Ribo-seq		8	sORFs_org_Mouse
503327	ENSMUST00000153666	Atp5f1-205	retained_intron	Ribo-seq		8	sORFs_org_Mouse

1221907

108

AAG...

KTG...

AAG

Intronic
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
52254	ENSMUST00000143022	Atp5f1-204	retained_intron	Ribo-seq		1	sORFs_org_Mouse

52689

CTG...

LPP...

CTG

Alternative
InCDS
NMD
Overlapping
sORF

Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
51944	ENSMUST00000133320	Atp5f1-203	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

1223270

123

AAG...

KRH...

AAG

Alternative
Downstream
NMD
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
51944	ENSMUST00000133320	Atp5f1-203	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

1221409

102

ATA...

IVY...

ATA

Intronic
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
52254	ENSMUST00000143022	Atp5f1-204	retained_intron	Ribo-seq	moderate	1	sORFs_org_Mouse

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