Gene NCBI:11949 | MetamORF

Gene

ID CARD

NCBI:11949

Aliases

1700094F02Rik
Atp5c1, Atp5f1c, ENSMUSG00000025781
MGI:1261437, NCBI:11949, OFF:Atp5c1

Chromosome

Transcripts

41 ORFs
7 known transcripts
132 ORF to known transcript associations

MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

ORFs

Display all the transcripts related to the entry.

50818

ENSMUST00000114897

Atp5c1-203

protein_coding

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
104422	39	TTG ...	LVK ...	Ribo-seq	TTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
501983	114	TTG ...	LFA ...	Ribo-seq	TTG		1	sORFs_org_Mouse	CDS sORF	Spleen_B_cell
735042	36	TTG ...	LEM ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
125969	135	TTG ...	LLE ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
125708	93	CTG ...	LDM ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	Liver
122418	87	ATG ...	MNL ...	Ribo-seq	ATG		2	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Liver
118354	123	GTG ...	VKK ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, MEF
101653	60	CTG ...	LDM ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
121115	126	TTG ...	LVK ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
124148	81	TTG ...	LMK ...	Ribo-seq	TTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Liver
497702	45	CTG ...	LLS ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
44419	39	CTG ...	LPE ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF
50817	66	TTG ...	LSG ...	Ribo-seq	TTG		10	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14, Liver, MEF, NSC, Testis, v6-5
500616	141	CTG ...	LSS ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, B_cell, Spleen_B_cell
103114	45	TTG ...	LEL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
965488	225	TTG ...	LSG ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
500461	78	ATG ...	MKA ...	Ribo-seq	ATG		2	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Liver
115578	36	GTG ...	VKK ...	Ribo-seq	GTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
113068	48	TTG ...	LLE ...	Ribo-seq	TTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
118990	132	TTG ...	LEL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
501597	120	CTG ...	LSP ...	Ribo-seq	CTG		7	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, B_cell, Liver, MEF, Spleen_B_cell

731342

ENSMUST00000139810

Atp5c1-205

protein_coding

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
966445	45	ACG ...	TEA ...	Ribo-seq	ACG	strong	1	sORFs_org_Mouse	sORF	BMDC
104422	39	TTG ...	LVK ...	Ribo-seq	TTG		1	sORFs_org_Mouse	sORF	Liver
735042	36	TTG ...	LEM ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	sORF	Liver
113068	48	TTG ...	LLE ...	Ribo-seq	TTG		1	sORFs_org_Mouse	sORF	Liver
103114	45	TTG ...	LEL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	sORF	Liver
99841	33	CTG ...	LQS ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	sORF	Liver
44419	39	CTG ...	LPE ...	Ribo-seq	CTG		2	sORFs_org_Mouse	sORF	Brain, Liver
115578	36	GTG ...	VKK ...	Ribo-seq	GTG		3	sORFs_org_Mouse	sORF	3T3, BMDC, Liver
95087	60	ATG ...	MWD ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse	sORF	3T3, Brain, Liver
735380	87	CTG ...	LIS ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	sORF	3T3, Liver

44200

ENSMUST00000114896

Atp5c1-202

protein_coding

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
497702	45	CTG ...	LLS ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, E14, Liver
734873	30	ATG ...	MHQ ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
44419	39	CTG ...	LPE ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, E14, Liver, Testis
497258	36	TTG ...	LKS ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, NSC
118354	123	GTG ...	VKK ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, E14, Liver
1206119	102	ATA ...	ILR ...	Ribo-seq	ATA	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
125969	135	TTG ...	LLE ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Liver, MEF
113068	48	TTG ...	LLE ...	Ribo-seq	TTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
46959	30	TTG ...	LWC ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Liver, Testis
99841	33	CTG ...	LQS ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell
864039	78	CTG ...	LSF ...	Ribo-seq	CTG		4	sORFs_org_Mouse	InCDS Overlapping sORF	E14, Liver, MEF, NSC
95087	60	ATG ...	MWD ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell
44199	33	CTG ...	LSA ...	Ribo-seq	CTG	moderate	7	sORFs_org_Mouse	sORF Upstream	E14, Liver, MEF, NSC, Testis
1214135	60	ATT ...	IQR ...	Ribo-seq	ATT	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
44625	33	GTG ...	VLF ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	Testis
861174	45	ATG ...	MKA ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, Liver
124148	81	TTG ...	LMK ...	Ribo-seq	TTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, Liver
735042	36	TTG ...	LEM ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
49832	150	CTG ...	LPE ...	Ribo-seq	CTG		4	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, E14, Liver, Testis
125708	93	CTG ...	LDM ...	Ribo-seq	CTG		3	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, E14, Liver
811874	105	CTG ...	LIL ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell
121115	126	TTG ...	LVK ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Liver
101653	60	CTG ...	LDM ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, Liver
100848	54	ATG ...	MNL ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver
863869	84	GTG ...	VHL ...	Ribo-seq	GTG		4	sORFs_org_Mouse	InCDS Overlapping sORF	E14, Liver, MEF, NSC
808720	114	ATG ...	MRR ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell
810891	36	GTG ...	VVL ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, Liver
118990	132	TTG ...	LEL ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, E14, Liver
122418	87	ATG ...	MNL ...	Ribo-seq	ATG		2	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, Liver
103114	45	TTG ...	LEL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
115578	36	GTG ...	VKK ...	Ribo-seq	GTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
114286	48	TTG ...	LMK ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver
500461	78	ATG ...	MKA ...	Ribo-seq	ATG		3	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, E14, Liver
735380	87	CTG ...	LIS ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell
966445	45	ACG ...	TEA ...	Ribo-seq	ACG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14

728071

ENSMUST00000145530

Atp5c1-206

protein_coding

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
46959	30	TTG ...	LWC ...	Ribo-seq	TTG	moderate	4	sORFs_org_Mouse	sORF	3T3, E14, Liver, NSC
735042	36	TTG ...	LEM ...	Ribo-seq	TTG	moderate	4	sORFs_org_Mouse	sORF	3T3, BMDC, E14, v6-5
121115	126	TTG ...	LVK ...	Ribo-seq	TTG		8	sORFs_org_Mouse	sORF	3T3, BMDC, E14, Liver, MEF, Neutrophil, v6-5
115578	36	GTG ...	VKK ...	Ribo-seq	GTG		4	sORFs_org_Mouse	sORF	E14, MEF, Neutrophil, v6-5
101653	60	CTG ...	LDM ...	Ribo-seq	CTG		5	sORFs_org_Mouse	sORF	E14, Liver, MEF, v6-5
497702	45	CTG ...	LLS ...	Ribo-seq	CTG	moderate	8	sORFs_org_Mouse	sORF	3T3, BMDC, E14, Liver, MEF, Neutrophil, NSC, v6-5
95087	60	ATG ...	MWD ...	Ribo-seq	ATG	moderate	8	sORFs_org_Mouse	sORF	BMDC, E14, Liver, MEF, Neutrophil, NSC, v6-5
113068	48	TTG ...	LLE ...	Ribo-seq	TTG		6	sORFs_org_Mouse	sORF	3T3, BMDC, E14, MEF, Neutrophil, v6-5
118354	123	GTG ...	VKK ...	Ribo-seq	GTG		7	sORFs_org_Mouse	sORF	BMDC, E14, Liver, MEF, Neutrophil, v6-5
44419	39	CTG ...	LPE ...	Ribo-seq	CTG		8	sORFs_org_Mouse	sORF	3T3, BMDC, E14, Liver, MEF, Neutrophil, NSC, v6-5
124148	81	TTG ...	LMK ...	Ribo-seq	TTG		7	sORFs_org_Mouse	sORF	BMDC, E14, Liver, MEF, NSC, v6-5
125708	93	CTG ...	LDM ...	Ribo-seq	CTG		9	sORFs_org_Mouse	sORF	3T3, BMDC, E14, Liver, MEF, Neutrophil, NSC, v6-5
99841	33	CTG ...	LQS ...	Ribo-seq	CTG	weak	8	sORFs_org_Mouse	sORF	3T3, BMDC, E14, Liver, MEF, Neutrophil, NSC, v6-5
49832	150	CTG ...	LPE ...	Ribo-seq	CTG		7	sORFs_org_Mouse	sORF	BMDC, E14, Liver, MEF, Neutrophil, NSC, v6-5
861174	45	ATG ...	MKA ...	Ribo-seq	ATG		4	sORFs_org_Mouse	sORF	E14, MEF, v6-5
735380	87	CTG ...	LIS ...	Ribo-seq	CTG	moderate	7	sORFs_org_Mouse	sORF	BMDC, E14, Liver, MEF, Neutrophil, NSC, v6-5
103114	45	TTG ...	LEL ...	Ribo-seq	TTG		6	sORFs_org_Mouse	sORF	3T3, E14, MEF, Neutrophil, v6-5
125969	135	TTG ...	LLE ...	Ribo-seq	TTG		7	sORFs_org_Mouse	sORF	3T3, BMDC, E14, Liver, MEF, Neutrophil, v6-5
811874	105	CTG ...	LIL ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	sORF	NSC
122418	87	ATG ...	MNL ...	Ribo-seq	ATG		7	sORFs_org_Mouse	sORF	BMDC, E14, Liver, MEF, NSC, v6-5
114286	48	TTG ...	LMK ...	Ribo-seq	TTG		5	sORFs_org_Mouse	sORF	E14, Liver, MEF, v6-5
100848	54	ATG ...	MNL ...	Ribo-seq	ATG		5	sORFs_org_Mouse	sORF	E14, Liver, MEF, v6-5
734873	30	ATG ...	MHQ ...	Ribo-seq	ATG	moderate	5	sORFs_org_Mouse	sORF	3T3, BMDC, E14, MEF, v6-5
500461	78	ATG ...	MKA ...	Ribo-seq	ATG		7	sORFs_org_Mouse	sORF	BMDC, E14, Liver, MEF, NSC, v6-5
808720	114	ATG ...	MRR ...	Ribo-seq	ATG	weak	4	sORFs_org_Mouse	sORF	E14, Neutrophil, NSC, v6-5
118990	132	TTG ...	LEL ...	Ribo-seq	TTG		8	sORFs_org_Mouse	sORF	3T3, BMDC, E14, Liver, MEF, Neutrophil, v6-5
104422	39	TTG ...	LVK ...	Ribo-seq	TTG		5	sORFs_org_Mouse	sORF	3T3, E14, MEF, Neutrophil, v6-5

95088

ENSMUST00000026887

Atp5c1-201

protein_coding

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
99841	33	CTG ...	LQS ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, R1E
44419	39	CTG ...	LPE ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, R1E, Spleen_B_cell
118990	132	TTG ...	LEL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
115578	36	GTG ...	VKK ...	Ribo-seq	GTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, R1E
103114	45	TTG ...	LEL ...	Ribo-seq	TTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, R1E
500461	78	ATG ...	MKA ...	Ribo-seq	ATG		2	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, Spleen_B_cell
100848	54	ATG ...	MNL ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
95087	60	ATG ...	MWD ...	Ribo-seq	ATG	moderate	4	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	Brain, Glioma, Liver, MEF, MESC, R1E, Spleen_B_cell
104422	39	TTG ...	LVK ...	Ribo-seq	TTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, R1E
101653	60	CTG ...	LDM ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
50817	66	TTG ...	LSG ...	Ribo-seq	TTG		7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Brain, E14, Liver, MEF, Spleen_B_cell
114286	48	TTG ...	LMK ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
125708	93	CTG ...	LDM ...	Ribo-seq	CTG		3	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, Spleen_B_cell
113068	48	TTG ...	LLE ...	Ribo-seq	TTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, R1E
124148	81	TTG ...	LMK ...	Ribo-seq	TTG		3	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, Spleen_B_cell
118354	123	GTG ...	VKK ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
121115	126	TTG ...	LVK ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
122418	87	ATG ...	MNL ...	Ribo-seq	ATG		4	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	Brain, Glioma, Liver, MEF, MESC, Spleen_B_cell
497258	36	TTG ...	LKS ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, Liver, Spleen_B_cell
497702	45	CTG ...	LLS ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, Spleen_B_cell
125969	135	TTG ...	LLE ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain

1722841

ENSMUST00000153554

Atp5c1-207

protein_coding

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
118354	123	GTG ...	VKK ...	Ribo-seq	GTG		1	sORFs_org_Mouse	sORF	MEF
49832	150	CTG ...	LPE ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF	MEF
103114	45	TTG ...	LEL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	sORF	MEF
44419	39	CTG ...	LPE ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF	MEF
125969	135	TTG ...	LLE ...	Ribo-seq	TTG		1	sORFs_org_Mouse	sORF	MEF
104422	39	TTG ...	LVK ...	Ribo-seq	TTG		1	sORFs_org_Mouse	sORF	MEF
115578	36	GTG ...	VKK ...	Ribo-seq	GTG		1	sORFs_org_Mouse	sORF	MEF
118990	132	TTG ...	LEL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	sORF	MEF
121115	126	TTG ...	LVK ...	Ribo-seq	TTG		1	sORFs_org_Mouse	sORF	MEF
113068	48	TTG ...	LLE ...	Ribo-seq	TTG		1	sORFs_org_Mouse	sORF	MEF

99842

ENSMUST00000130067

Atp5c1-204

protein_coding

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
49832	150	CTG ...	LPE ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF	MEF
811874	105	CTG ...	LIL ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	sORF	MEF
810891	36	GTG ...	VVL ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	sORF	MEF
46959	30	TTG ...	LWC ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	sORF	MEF
808720	114	ATG ...	MRR ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	sORF	MEF
44419	39	CTG ...	LPE ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF	MEF
44625	33	GTG ...	VLF ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	sORF	MEF
99841	33	CTG ...	LQS ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	sORF	Brain, MEF

ORFs

41 ORFs
7 known transcripts
132 ORF to known transcript associations

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF Length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Start codon

The start codon sequence of the ORF.

ORF annotations

A comma-separated list of all the annotations computed by our algorithm for the ORF. This list includes the annotations computed for the ORF for all transcripts. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of all the cell types in which the ORF has already been identified.

Transcripts

Display all the transcripts related to the entry.

104422

TTG...

LVK...

TTG

InCDS
Overlapping
sORF

MEF, Liver, Brain,
R1E, 3T3, E14,
Neutrophil, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
50818	ENSMUST00000114897	Atp5c1-203	protein_coding	Ribo-seq		1	sORFs_org_Mouse
731342	ENSMUST00000139810	Atp5c1-205	protein_coding	Ribo-seq		1	sORFs_org_Mouse
95088	ENSMUST00000026887	Atp5c1-201	protein_coding	Ribo-seq		2	sORFs_org_Mouse
1722841	ENSMUST00000153554	Atp5c1-207	protein_coding	Ribo-seq		1	sORFs_org_Mouse
728071	ENSMUST00000145530	Atp5c1-206	protein_coding	Ribo-seq		5	sORFs_org_Mouse

966445

ACG...

TEA...

ACG

sORF
Alternative
InCDS
Overlapping

BMDC, E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
731342	ENSMUST00000139810	Atp5c1-205	protein_coding	Ribo-seq	strong	1	sORFs_org_Mouse
44200	ENSMUST00000114896	Atp5c1-202	protein_coding	Ribo-seq	strong	1	sORFs_org_Mouse

497702

CTG...

LLS...

CTG

InCDS
Overlapping
sORF

B_cell, E14, Liver,
3T3, BMDC, MEF,
Neutrophil, NSC, v6-5,
Brain, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
44200	ENSMUST00000114896	Atp5c1-202	protein_coding	Ribo-seq	moderate	3	sORFs_org_Mouse
728071	ENSMUST00000145530	Atp5c1-206	protein_coding	Ribo-seq	moderate	8	sORFs_org_Mouse
50818	ENSMUST00000114897	Atp5c1-203	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse
95088	ENSMUST00000026887	Atp5c1-201	protein_coding	Ribo-seq	moderate	2	sORFs_org_Mouse

734873

ATG...

MHQ...

ATG

Alternative
InCDS
Overlapping
sORF

E14, 3T3, BMDC,
MEF, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
44200	ENSMUST00000114896	Atp5c1-202	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse
728071	ENSMUST00000145530	Atp5c1-206	protein_coding	Ribo-seq	moderate	5	sORFs_org_Mouse

46959

TTG...

LWC...

TTG

sORF
Alternative
InCDS
Overlapping

3T3, E14, Liver,
NSC, B_cell, Testis,
MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
728071	ENSMUST00000145530	Atp5c1-206	protein_coding	Ribo-seq	moderate	4	sORFs_org_Mouse
44200	ENSMUST00000114896	Atp5c1-202	protein_coding	Ribo-seq	moderate	3	sORFs_org_Mouse
99842	ENSMUST00000130067	Atp5c1-204	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse

735042

TTG...

LEM...

TTG

sORF
Alternative
InCDS
Overlapping

3T3, BMDC, E14,
v6-5, Liver, Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
728071	ENSMUST00000145530	Atp5c1-206	protein_coding	Ribo-seq	moderate	4	sORFs_org_Mouse
731342	ENSMUST00000139810	Atp5c1-205	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse
50818	ENSMUST00000114897	Atp5c1-203	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse
44200	ENSMUST00000114896	Atp5c1-202	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse

99841

CTG...

LQS...

CTG

Alternative
InCDS
Overlapping
sORF

Brain, R1E, B_cell,
3T3, BMDC, E14,
Liver, MEF, Neutrophil,
NSC, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
95088	ENSMUST00000026887	Atp5c1-201	protein_coding	Ribo-seq	weak	2	sORFs_org_Mouse
44200	ENSMUST00000114896	Atp5c1-202	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse
728071	ENSMUST00000145530	Atp5c1-206	protein_coding	Ribo-seq	weak	8	sORFs_org_Mouse
731342	ENSMUST00000139810	Atp5c1-205	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse
99842	ENSMUST00000130067	Atp5c1-204	protein_coding	Ribo-seq	weak	2	sORFs_org_Mouse

44419

CTG...

LPE...

CTG

Alternative
InCDS
Overlapping
sORF

Brain, R1E, Spleen_B_cell,
B_cell, E14, Liver,
Testis, 3T3, BMDC,
MEF, Neutrophil, NSC,
v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
95088	ENSMUST00000026887	Atp5c1-201	protein_coding	Ribo-seq		3	sORFs_org_Mouse
44200	ENSMUST00000114896	Atp5c1-202	protein_coding	Ribo-seq		4	sORFs_org_Mouse
728071	ENSMUST00000145530	Atp5c1-206	protein_coding	Ribo-seq		8	sORFs_org_Mouse
1722841	ENSMUST00000153554	Atp5c1-207	protein_coding	Ribo-seq		1	sORFs_org_Mouse
50818	ENSMUST00000114897	Atp5c1-203	protein_coding	Ribo-seq		2	sORFs_org_Mouse
731342	ENSMUST00000139810	Atp5c1-205	protein_coding	Ribo-seq		2	sORFs_org_Mouse
99842	ENSMUST00000130067	Atp5c1-204	protein_coding	Ribo-seq		1	sORFs_org_Mouse

118354

123

GTG...

VKK...

GTG

sORF
Alternative
InCDS
Overlapping

MEF, B_cell, E14,
Liver, BMDC, Neutrophil,
v6-5, 3T3, Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
1722841	ENSMUST00000153554	Atp5c1-207	protein_coding	Ribo-seq		1	sORFs_org_Mouse
44200	ENSMUST00000114896	Atp5c1-202	protein_coding	Ribo-seq		3	sORFs_org_Mouse
728071	ENSMUST00000145530	Atp5c1-206	protein_coding	Ribo-seq		7	sORFs_org_Mouse
50818	ENSMUST00000114897	Atp5c1-203	protein_coding	Ribo-seq		3	sORFs_org_Mouse
95088	ENSMUST00000026887	Atp5c1-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse

497258

TTG...

LKS...

TTG

Alternative
InCDS
Overlapping
sORF

E14, NSC, Brain,
Liver, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
44200	ENSMUST00000114896	Atp5c1-202	protein_coding	Ribo-seq		2	sORFs_org_Mouse
95088	ENSMUST00000026887	Atp5c1-201	protein_coding	Ribo-seq		3	sORFs_org_Mouse

49832

150

CTG...

LPE...

CTG

sORF
InCDS
Overlapping

MEF, BMDC, E14,
Liver, Neutrophil, NSC,
v6-5, B_cell, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
99842	ENSMUST00000130067	Atp5c1-204	protein_coding	Ribo-seq		1	sORFs_org_Mouse
1722841	ENSMUST00000153554	Atp5c1-207	protein_coding	Ribo-seq		1	sORFs_org_Mouse
728071	ENSMUST00000145530	Atp5c1-206	protein_coding	Ribo-seq		7	sORFs_org_Mouse
44200	ENSMUST00000114896	Atp5c1-202	protein_coding	Ribo-seq		4	sORFs_org_Mouse

118990

132

TTG...

LEL...

TTG

Alternative
InCDS
Overlapping
sORF

Brain, MEF, B_cell,
E14, Liver, 3T3,
BMDC, Neutrophil, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
95088	ENSMUST00000026887	Atp5c1-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse
1722841	ENSMUST00000153554	Atp5c1-207	protein_coding	Ribo-seq		1	sORFs_org_Mouse
44200	ENSMUST00000114896	Atp5c1-202	protein_coding	Ribo-seq		3	sORFs_org_Mouse
728071	ENSMUST00000145530	Atp5c1-206	protein_coding	Ribo-seq		8	sORFs_org_Mouse
50818	ENSMUST00000114897	Atp5c1-203	protein_coding	Ribo-seq		1	sORFs_org_Mouse

501983

114

TTG...

LFA...

TTG

CDS
sORF

Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
50818	ENSMUST00000114897	Atp5c1-203	protein_coding	Ribo-seq		1	sORFs_org_Mouse

121115

126

TTG...

LVK...

TTG

sORF
Alternative
InCDS
Overlapping

3T3, BMDC, E14,
Liver, MEF, Neutrophil,
v6-5, B_cell, Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
728071	ENSMUST00000145530	Atp5c1-206	protein_coding	Ribo-seq		8	sORFs_org_Mouse
50818	ENSMUST00000114897	Atp5c1-203	protein_coding	Ribo-seq		1	sORFs_org_Mouse
44200	ENSMUST00000114896	Atp5c1-202	protein_coding	Ribo-seq		2	sORFs_org_Mouse
95088	ENSMUST00000026887	Atp5c1-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse
1722841	ENSMUST00000153554	Atp5c1-207	protein_coding	Ribo-seq		1	sORFs_org_Mouse

1206119

102

ATA...

ILR...

ATA

InCDS
Overlapping
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
44200	ENSMUST00000114896	Atp5c1-202	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse

811874

105

CTG...

LIL...

CTG

sORF
InCDS
Overlapping

MEF, B_cell, NSC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
99842	ENSMUST00000130067	Atp5c1-204	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse
44200	ENSMUST00000114896	Atp5c1-202	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse
728071	ENSMUST00000145530	Atp5c1-206	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse

125969

135

TTG...

LLE...

TTG

Alternative
InCDS
Overlapping
sORF

B_cell, Liver, MEF,
3T3, BMDC, E14,
Neutrophil, v6-5, Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
44200	ENSMUST00000114896	Atp5c1-202	protein_coding	Ribo-seq		3	sORFs_org_Mouse
50818	ENSMUST00000114897	Atp5c1-203	protein_coding	Ribo-seq		1	sORFs_org_Mouse
1722841	ENSMUST00000153554	Atp5c1-207	protein_coding	Ribo-seq		1	sORFs_org_Mouse
728071	ENSMUST00000145530	Atp5c1-206	protein_coding	Ribo-seq		7	sORFs_org_Mouse
95088	ENSMUST00000026887	Atp5c1-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse

113068

TTG...

LLE...

TTG

InCDS
Overlapping
sORF

MEF, 3T3, BMDC,
E14, Neutrophil, v6-5,
Liver, Brain, R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
44200	ENSMUST00000114896	Atp5c1-202	protein_coding	Ribo-seq		1	sORFs_org_Mouse
728071	ENSMUST00000145530	Atp5c1-206	protein_coding	Ribo-seq		6	sORFs_org_Mouse
731342	ENSMUST00000139810	Atp5c1-205	protein_coding	Ribo-seq		1	sORFs_org_Mouse
95088	ENSMUST00000026887	Atp5c1-201	protein_coding	Ribo-seq		2	sORFs_org_Mouse
50818	ENSMUST00000114897	Atp5c1-203	protein_coding	Ribo-seq		1	sORFs_org_Mouse
1722841	ENSMUST00000153554	Atp5c1-207	protein_coding	Ribo-seq		1	sORFs_org_Mouse

115578

GTG...

VKK...

GTG

InCDS
Overlapping
sORF

Brain, R1E, E14,
MEF, Neutrophil, v6-5,
3T3, BMDC, Liver

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
95088	ENSMUST00000026887	Atp5c1-201	protein_coding	Ribo-seq		2	sORFs_org_Mouse
728071	ENSMUST00000145530	Atp5c1-206	protein_coding	Ribo-seq		4	sORFs_org_Mouse
50818	ENSMUST00000114897	Atp5c1-203	protein_coding	Ribo-seq		1	sORFs_org_Mouse
1722841	ENSMUST00000153554	Atp5c1-207	protein_coding	Ribo-seq		1	sORFs_org_Mouse
44200	ENSMUST00000114896	Atp5c1-202	protein_coding	Ribo-seq		1	sORFs_org_Mouse
731342	ENSMUST00000139810	Atp5c1-205	protein_coding	Ribo-seq		3	sORFs_org_Mouse

101653

CTG...

LDM...

CTG

sORF
Alternative
InCDS
Overlapping

E14, Liver, MEF,
v6-5, Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
728071	ENSMUST00000145530	Atp5c1-206	protein_coding	Ribo-seq		5	sORFs_org_Mouse
95088	ENSMUST00000026887	Atp5c1-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse
50818	ENSMUST00000114897	Atp5c1-203	protein_coding	Ribo-seq		1	sORFs_org_Mouse
44200	ENSMUST00000114896	Atp5c1-202	protein_coding	Ribo-seq		2	sORFs_org_Mouse

95087

ATG...

MWD...

ATG

sORF
Alternative
InCDS
Overlapping

BMDC, E14, Liver,
MEF, Neutrophil, NSC,
v6-5, B_cell, Brain,
Glioma, MESC, R1E,
Spleen_B_cell, 3T3

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
728071	ENSMUST00000145530	Atp5c1-206	protein_coding	Ribo-seq	moderate	8	sORFs_org_Mouse
44200	ENSMUST00000114896	Atp5c1-202	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse
95088	ENSMUST00000026887	Atp5c1-201	protein_coding	Ribo-seq	moderate	4	sORFs_org_Mouse Johnstone2016
731342	ENSMUST00000139810	Atp5c1-205	protein_coding	Ribo-seq	moderate	3	sORFs_org_Mouse

103114

TTG...

LEL...

TTG

InCDS
Overlapping
sORF

Brain, R1E, MEF,
Liver, 3T3, E14,
Neutrophil, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
95088	ENSMUST00000026887	Atp5c1-201	protein_coding	Ribo-seq		2	sORFs_org_Mouse
1722841	ENSMUST00000153554	Atp5c1-207	protein_coding	Ribo-seq		1	sORFs_org_Mouse
731342	ENSMUST00000139810	Atp5c1-205	protein_coding	Ribo-seq		1	sORFs_org_Mouse
50818	ENSMUST00000114897	Atp5c1-203	protein_coding	Ribo-seq		1	sORFs_org_Mouse
728071	ENSMUST00000145530	Atp5c1-206	protein_coding	Ribo-seq		6	sORFs_org_Mouse
44200	ENSMUST00000114896	Atp5c1-202	protein_coding	Ribo-seq		1	sORFs_org_Mouse

864039

CTG...

LSF...

CTG

InCDS
Overlapping
sORF

E14, Liver, MEF,
NSC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
44200	ENSMUST00000114896	Atp5c1-202	protein_coding	Ribo-seq		4	sORFs_org_Mouse

500461

ATG...

MKA...

ATG

InCDS
Overlapping
sORF

Brain, Spleen_B_cell, 3T3,
Liver, BMDC, E14,
MEF, NSC, v6-5,
B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
95088	ENSMUST00000026887	Atp5c1-201	protein_coding	Ribo-seq		2	sORFs_org_Mouse
50818	ENSMUST00000114897	Atp5c1-203	protein_coding	Ribo-seq		2	sORFs_org_Mouse
728071	ENSMUST00000145530	Atp5c1-206	protein_coding	Ribo-seq		7	sORFs_org_Mouse
44200	ENSMUST00000114896	Atp5c1-202	protein_coding	Ribo-seq		3	sORFs_org_Mouse

44199

CTG...

LSA...

CTG

sORF
Upstream

E14, Liver, MEF,
NSC, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
44200	ENSMUST00000114896	Atp5c1-202	protein_coding	Ribo-seq	moderate	7	sORFs_org_Mouse

1214135

ATT...

IQR...

ATT

Alternative
InCDS
Overlapping
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
44200	ENSMUST00000114896	Atp5c1-202	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse

124148

TTG...

LMK...

TTG

sORF
InCDS
Overlapping

BMDC, E14, Liver,
MEF, NSC, v6-5,
B_cell, 3T3, Brain,
Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
728071	ENSMUST00000145530	Atp5c1-206	protein_coding	Ribo-seq		7	sORFs_org_Mouse
44200	ENSMUST00000114896	Atp5c1-202	protein_coding	Ribo-seq		2	sORFs_org_Mouse
50818	ENSMUST00000114897	Atp5c1-203	protein_coding	Ribo-seq		2	sORFs_org_Mouse
95088	ENSMUST00000026887	Atp5c1-201	protein_coding	Ribo-seq		3	sORFs_org_Mouse

100848

ATG...

MNL...

ATG

Alternative
InCDS
Overlapping
sORF

Brain, Liver, E14,
MEF, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
95088	ENSMUST00000026887	Atp5c1-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse
44200	ENSMUST00000114896	Atp5c1-202	protein_coding	Ribo-seq		1	sORFs_org_Mouse
728071	ENSMUST00000145530	Atp5c1-206	protein_coding	Ribo-seq		5	sORFs_org_Mouse

44625

GTG...

VLF...

GTG

InCDS
Overlapping
sORF

Testis, MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
44200	ENSMUST00000114896	Atp5c1-202	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse
99842	ENSMUST00000130067	Atp5c1-204	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse

861174

ATG...

MKA...

ATG

Alternative
InCDS
Overlapping
sORF

E14, Liver, MEF,
v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
44200	ENSMUST00000114896	Atp5c1-202	protein_coding	Ribo-seq		2	sORFs_org_Mouse
728071	ENSMUST00000145530	Atp5c1-206	protein_coding	Ribo-seq		4	sORFs_org_Mouse

125708

CTG...

LDM...

CTG

InCDS
Overlapping
sORF

Liver, 3T3, BMDC,
E14, MEF, Neutrophil,
NSC, v6-5, Brain,
Spleen_B_cell, B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
50818	ENSMUST00000114897	Atp5c1-203	protein_coding	Ribo-seq		1	sORFs_org_Mouse
728071	ENSMUST00000145530	Atp5c1-206	protein_coding	Ribo-seq		9	sORFs_org_Mouse
95088	ENSMUST00000026887	Atp5c1-201	protein_coding	Ribo-seq		3	sORFs_org_Mouse
44200	ENSMUST00000114896	Atp5c1-202	protein_coding	Ribo-seq		3	sORFs_org_Mouse

122418

ATG...

MNL...

ATG

InCDS
Overlapping
sORF

3T3, Liver, BMDC,
E14, MEF, NSC,
v6-5, Brain, Glioma,
MESC, Spleen_B_cell, B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
50818	ENSMUST00000114897	Atp5c1-203	protein_coding	Ribo-seq		2	sORFs_org_Mouse
728071	ENSMUST00000145530	Atp5c1-206	protein_coding	Ribo-seq		7	sORFs_org_Mouse
95088	ENSMUST00000026887	Atp5c1-201	protein_coding	Ribo-seq		4	sORFs_org_Mouse Johnstone2016
44200	ENSMUST00000114896	Atp5c1-202	protein_coding	Ribo-seq		2	sORFs_org_Mouse

50817

TTG...

LSG...

TTG

Alternative
InCDS
Overlapping
sORF

B_cell, Brain, E14,
Liver, MEF, Spleen_B_cell,
3T3, BMDC, NSC,
Testis, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
95088	ENSMUST00000026887	Atp5c1-201	protein_coding	Ribo-seq		7	sORFs_org_Mouse
50818	ENSMUST00000114897	Atp5c1-203	protein_coding	Ribo-seq		10	sORFs_org_Mouse

114286

TTG...

LMK...

TTG

Alternative
InCDS
Overlapping
sORF

Brain, E14, Liver,
MEF, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
95088	ENSMUST00000026887	Atp5c1-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse
728071	ENSMUST00000145530	Atp5c1-206	protein_coding	Ribo-seq		5	sORFs_org_Mouse
44200	ENSMUST00000114896	Atp5c1-202	protein_coding	Ribo-seq		1	sORFs_org_Mouse

810891

GTG...

VVL...

GTG

sORF
InCDS
Overlapping

MEF, B_cell, Liver

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
99842	ENSMUST00000130067	Atp5c1-204	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse
44200	ENSMUST00000114896	Atp5c1-202	protein_coding	Ribo-seq	moderate	2	sORFs_org_Mouse

500616

141

CTG...

LSS...

CTG

Alternative
Overlapping
sORF
Upstream

3T3, B_cell, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
50818	ENSMUST00000114897	Atp5c1-203	protein_coding	Ribo-seq		3	sORFs_org_Mouse

735380

CTG...

LIS...

CTG

sORF
Alternative
InCDS
Overlapping

BMDC, E14, Liver,
MEF, Neutrophil, NSC,
v6-5, 3T3, B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
728071	ENSMUST00000145530	Atp5c1-206	protein_coding	Ribo-seq	moderate	7	sORFs_org_Mouse
731342	ENSMUST00000139810	Atp5c1-205	protein_coding	Ribo-seq	moderate	2	sORFs_org_Mouse
44200	ENSMUST00000114896	Atp5c1-202	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse

965488

225

TTG...

LSG...

TTG

Alternative
InCDS
Overlapping
sORF

BMDC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
50818	ENSMUST00000114897	Atp5c1-203	protein_coding	Ribo-seq		1	sORFs_org_Mouse

808720

114

ATG...

MRR...

ATG

sORF
InCDS
Overlapping

MEF, B_cell, E14,
Neutrophil, NSC, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
99842	ENSMUST00000130067	Atp5c1-204	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse
44200	ENSMUST00000114896	Atp5c1-202	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse
728071	ENSMUST00000145530	Atp5c1-206	protein_coding	Ribo-seq	weak	4	sORFs_org_Mouse

863869

GTG...

VHL...

GTG

InCDS
Overlapping
sORF

E14, Liver, MEF,
NSC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
44200	ENSMUST00000114896	Atp5c1-202	protein_coding	Ribo-seq		4	sORFs_org_Mouse

501597

120

CTG...

LSP...

CTG

Alternative
Overlapping
sORF
Upstream

3T3, B_cell, Liver,
MEF, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
50818	ENSMUST00000114897	Atp5c1-203	protein_coding	Ribo-seq		7	sORFs_org_Mouse

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