Gene NCBI:11848 | MetamORF

Gene

ID CARD

NCBI:11848

Aliases

Arha
Arha1, Arha2, ENSMUSG00000007815
MGI:1096342, NCBI:11848, OFF:Rhoa
Rhoa

Chromosome

Transcripts

33 ORFs
5 known transcripts
60 ORF to known transcript associations

MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

ORFs

Display all the transcripts related to the entry.

5990

ENSMUST00000007959

Rhoa-201

protein_coding

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
85930	63	CTG ...	LDR ...	Ribo-seq	CTG	moderate	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, Liver
924166	54	AAG ...	KIM ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
762999	132	TTG ...	LAR ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative sORF Upstream	B_cell, MEF
83333	48	ATG ...	MTA ...	Ribo-seq	ATG	moderate	5	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	B_cell, Brain, Glioma, Liver, MEF, MESC
974847	90	ACG ...	TEL ...	Ribo-seq	ACG	moderate	1	sORFs_org_Mouse	sORF Upstream	MEF
6596	60	TTG ...	LGT ...	Ribo-seq	TTG	moderate	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Brain, Liver, MEF
87965	87	TTG ...	LAR ...	Ribo-seq	TTG		15	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, Testis
84453	60	ATG ...	MCP ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC
1524254	39	GTG ...	VKP ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	NSC
1330971	30	ATG ...	MLH ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse Johnstone2016	sORF Upstream	E14, Glioma, Liver, MEF, MESC
6582	54	CTG ...	LSK ...	Ribo-seq	CTG	weak	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Brain, Liver, MEF, Skin_tumor
759618	234	CTG ...	LAP ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	sORF Upstream	B_cell, Neutrophil
1275439	120	ATA ...	IAR ...	Ribo-seq	ATA		1	sORFs_org_Mouse	Alternative sORF Upstream	E14
435129	78	ATG ...	MDS ...	Ribo-seq	ATG	strong	3	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	B_cell, Glioma, Liver, MEF, MESC
87364	60	ATG ...	MCP ...	Ribo-seq	ATG		3	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	B_cell, BMDC, Glioma, Liver, MEF, MESC
6035	78	ATG ...	MCP ...	Ribo-seq	ATG	weak	7	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	B_cell, Brain, Glioma, Liver, MEF, MESC, Skin_tumor
1523392	30	ATG ...	MGH ...	Ribo-seq	ATG	moderate	1	Johnstone2016	Alternative InCDS Overlapping sORF	Glioma, Liver, MEF, MESC
5989	36	ATG ...	MTS ...	Ribo-seq	ATG	moderate	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Liver, MEF, Skin_tumor
86642	84	CTG ...	LPV ...	Ribo-seq	CTG	moderate	7	sORFs_org_Mouse	sORF Upstream	B_cell, BMDC, Brain, Liver, Testis

269794

ENSMUST00000193424

Rhoa-202

retained_intron

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1274524	66	TTG ...	LAK ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	E14
1270158	135	ACG ...	TGV ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Intronic sORF	E14
83333	48	ATG ...	MTA ...	Ribo-seq	ATG	moderate	4	sORFs_org_Mouse	Intronic sORF	BMDC, Brain, R1E, Spleen_B_cell
1271711	117	CTG ...	LVG ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Intronic sORF	BMDC, Brain, E14
1478794	144	GTG ...	VHF ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	BMDC, Brain
921936	48	AGG ...	RTF ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Intronic sORF	E14
85930	63	CTG ...	LDR ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	Intronic sORF	BMDC, Brain, R1E, Spleen_B_cell
1273091	78	ACG ...	TRR ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Intronic sORF	E14
1273308	105	AAG ...	KKD ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Intronic sORF	E14
1270943	81	CTG ...	LRP ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	Brain, E14
6596	60	TTG ...	LGT ...	Ribo-seq	TTG	moderate	5	sORFs_org_Mouse	Intronic sORF	BMDC, Brain, E14, R1E, Spleen_B_cell
5989	36	ATG ...	MTS ...	Ribo-seq	ATG	moderate	5	sORFs_org_Mouse	Intronic sORF	BMDC, Brain, E14, R1E, Spleen_B_cell
6035	78	ATG ...	MCP ...	Ribo-seq	ATG	weak	5	sORFs_org_Mouse	Intronic sORF	BMDC, Brain, E14, R1E, Spleen_B_cell
435129	78	ATG ...	MDS ...	Ribo-seq	ATG	strong	3	sORFs_org_Mouse	Intronic sORF	BMDC, Brain, Spleen_B_cell
1571007	123	TTG ...	LAL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	Brain
1479221	129	GTG ...	VPI ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	BMDC, Brain
6582	54	CTG ...	LSK ...	Ribo-seq	CTG	weak	5	sORFs_org_Mouse	Intronic sORF	BMDC, Brain, R1E, Spleen_B_cell

6597

ENSMUST00000194701

Rhoa-205

protein_coding

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
5989	36	ATG ...	MTS ...	Ribo-seq	ATG	moderate	10	sORFs_org_Mouse	sORF	3T3, BMDC, Brain, E14, MEF, NSC, Testis, v6-5
924166	54	AAG ...	KIM ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	sORF	BMDC
6035	78	ATG ...	MCP ...	Ribo-seq	ATG	weak	12	sORFs_org_Mouse	sORF	3T3, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, Testis, v6-5
6582	54	CTG ...	LSK ...	Ribo-seq	CTG	weak	8	sORFs_org_Mouse	sORF	3T3, E14, MEF, Neutrophil, NSC, v6-5
84453	60	ATG ...	MCP ...	Ribo-seq	ATG		2	sORFs_org_Mouse	sORF	BMDC, Brain
921936	48	AGG ...	RTF ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	sORF	BMDC
435129	78	ATG ...	MDS ...	Ribo-seq	ATG	strong	6	sORFs_org_Mouse	sORF	E14, MEF, Neutrophil, NSC
85930	63	CTG ...	LDR ...	Ribo-seq	CTG	moderate	10	sORFs_org_Mouse	sORF	Brain, E14, Liver, MEF, Neutrophil, NSC, Testis, v6-5
1523392	30	ATG ...	MGH ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	sORF	MEF
6596	60	TTG ...	LGT ...	Ribo-seq	TTG	moderate	13	sORFs_org_Mouse	sORF	3T3, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, Skin_tumor, Testis, v6-5
83333	48	ATG ...	MTA ...	Ribo-seq	ATG	moderate	11	sORFs_org_Mouse	sORF	3T3, Brain, E14, Liver, MEF, Neutrophil, NSC, Testis, v6-5
417515	45	TTG ...	LKT ...	Ribo-seq	TTG		2	sORFs_org_Mouse	sORF	BMDC, C2C12

436599

ENSMUST00000193619

Rhoa-204

retained_intron

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1270084	165	ATA ...	IAR ...	Ribo-seq	ATA	moderate	1	sORFs_org_Mouse	Intronic sORF	E14
762999	132	TTG ...	LAR ...	Ribo-seq	TTG	moderate	4	sORFs_org_Mouse	Intronic sORF	E14, MEF, Neutrophil, NSC
974847	90	ACG ...	TEL ...	Ribo-seq	ACG	moderate	1	sORFs_org_Mouse	Intronic sORF	E14
86642	84	CTG ...	LPV ...	Ribo-seq	CTG	moderate	13	sORFs_org_Mouse	Intronic sORF	3T3, E14, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, v6-5

84454

ENSMUST00000193490

Rhoa-203

protein_coding

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
924166	54	AAG ...	KIM ...	Ribo-seq	AAG		1	sORFs_org_Mouse	sORF	E14
87364	60	ATG ...	MCP ...	Ribo-seq	ATG		3	sORFs_org_Mouse	sORF	Brain, E14, Testis
1523392	30	ATG ...	MGH ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	sORF	NSC
417515	45	TTG ...	LKT ...	Ribo-seq	TTG		1	sORFs_org_Mouse	sORF	E14
84453	60	ATG ...	MCP ...	Ribo-seq	ATG		3	sORFs_org_Mouse	sORF	Brain, E14, Testis
83333	48	ATG ...	MTA ...	Ribo-seq	ATG		1	sORFs_org_Mouse	sORF	E14
1273509	66	AGG ...	RSM ...	Ribo-seq	AGG		1	sORFs_org_Mouse	sORF	E14
1275621	66	AGG ...	RSM ...	Ribo-seq	AGG		1	sORFs_org_Mouse	sORF	E14

ORFs

33 ORFs
5 known transcripts
60 ORF to known transcript associations

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF Length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Start codon

The start codon sequence of the ORF.

ORF annotations

A comma-separated list of all the annotations computed by our algorithm for the ORF. This list includes the annotations computed for the ORF for all transcripts. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of all the cell types in which the ORF has already been identified.

Transcripts

Display all the transcripts related to the entry.

85930

CTG...

LDR...

CTG

Alternative
InCDS
Overlapping
sORF
Intronic

3T3, B_cell, Brain,
Liver, BMDC, R1E,
Spleen_B_cell, E14, MEF,
Neutrophil, NSC, Testis,
v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
5990	ENSMUST00000007959	Rhoa-201	protein_coding	Ribo-seq	moderate	5	sORFs_org_Mouse
269794	ENSMUST00000193424	Rhoa-202	retained_intron	Ribo-seq	moderate	4	sORFs_org_Mouse
6597	ENSMUST00000194701	Rhoa-205	protein_coding	Ribo-seq	moderate	10	sORFs_org_Mouse

1274524

TTG...

LAK...

TTG

Intronic
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
269794	ENSMUST00000193424	Rhoa-202	retained_intron	Ribo-seq		1	sORFs_org_Mouse

924166

AAG...

KIM...

AAG

Alternative
InCDS
Overlapping
sORF

MEF, BMDC, E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
5990	ENSMUST00000007959	Rhoa-201	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse
6597	ENSMUST00000194701	Rhoa-205	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse
84454	ENSMUST00000193490	Rhoa-203	protein_coding	Ribo-seq		1	sORFs_org_Mouse

5989

ATG...

MTS...

ATG

sORF
Intronic
Alternative
InCDS
Overlapping

3T3, BMDC, Brain,
E14, MEF, NSC,
Testis, v6-5, R1E,
Spleen_B_cell, B_cell, Liver,
Skin_tumor

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
6597	ENSMUST00000194701	Rhoa-205	protein_coding	Ribo-seq	moderate	10	sORFs_org_Mouse
269794	ENSMUST00000193424	Rhoa-202	retained_intron	Ribo-seq	moderate	5	sORFs_org_Mouse
5990	ENSMUST00000007959	Rhoa-201	protein_coding	Ribo-seq	moderate	5	sORFs_org_Mouse

1270084

165

ATA...

IAR...

ATA

Intronic
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
436599	ENSMUST00000193619	Rhoa-204	retained_intron	Ribo-seq	moderate	1	sORFs_org_Mouse

1270158

135

ACG...

TGV...

ACG

Intronic
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
269794	ENSMUST00000193424	Rhoa-202	retained_intron	Ribo-seq		1	sORFs_org_Mouse

83333

ATG...

MTA...

ATG

Intronic
sORF
Alternative
InCDS
Overlapping

BMDC, Brain, R1E,
Spleen_B_cell, B_cell, Glioma,
Liver, MEF, MESC,
E14, 3T3, Neutrophil,
NSC, Testis, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
269794	ENSMUST00000193424	Rhoa-202	retained_intron	Ribo-seq	moderate	4	sORFs_org_Mouse
5990	ENSMUST00000007959	Rhoa-201	protein_coding	Ribo-seq	moderate	5	sORFs_org_Mouse Johnstone2016
84454	ENSMUST00000193490	Rhoa-203	protein_coding	Ribo-seq		1	sORFs_org_Mouse
6597	ENSMUST00000194701	Rhoa-205	protein_coding	Ribo-seq	moderate	11	sORFs_org_Mouse

762999

132

TTG...

LAR...

TTG

Alternative
sORF
Upstream
Intronic

B_cell, MEF, E14,
Neutrophil, NSC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
5990	ENSMUST00000007959	Rhoa-201	protein_coding	Ribo-seq		2	sORFs_org_Mouse
436599	ENSMUST00000193619	Rhoa-204	retained_intron	Ribo-seq	moderate	4	sORFs_org_Mouse

1271711

117

CTG...

LVG...

CTG

Intronic
sORF

BMDC, Brain, E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
269794	ENSMUST00000193424	Rhoa-202	retained_intron	Ribo-seq		3	sORFs_org_Mouse

6035

ATG...

MCP...

ATG

sORF
Intronic
Alternative
InCDS
Overlapping

3T3, BMDC, Brain,
E14, Liver, MEF,
Neutrophil, NSC, Testis,
v6-5, R1E, Spleen_B_cell,
B_cell, Glioma, MESC,
Skin_tumor

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
6597	ENSMUST00000194701	Rhoa-205	protein_coding	Ribo-seq	weak	12	sORFs_org_Mouse
269794	ENSMUST00000193424	Rhoa-202	retained_intron	Ribo-seq	weak	5	sORFs_org_Mouse
5990	ENSMUST00000007959	Rhoa-201	protein_coding	Ribo-seq	weak	7	sORFs_org_Mouse Johnstone2016

1478794

144

GTG...

VHF...

GTG

Intronic
sORF

BMDC, Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
269794	ENSMUST00000193424	Rhoa-202	retained_intron	Ribo-seq		2	sORFs_org_Mouse

921936

AGG...

RTF...

AGG

Intronic
sORF

E14, BMDC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
269794	ENSMUST00000193424	Rhoa-202	retained_intron	Ribo-seq	moderate	1	sORFs_org_Mouse
6597	ENSMUST00000194701	Rhoa-205	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse

974847

ACG...

TEL...

ACG

sORF
Upstream
Intronic

MEF, E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
5990	ENSMUST00000007959	Rhoa-201	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse
436599	ENSMUST00000193619	Rhoa-204	retained_intron	Ribo-seq	moderate	1	sORFs_org_Mouse

6582

CTG...

LSK...

CTG

sORF
Alternative
InCDS
Overlapping
Intronic

3T3, E14, MEF,
Neutrophil, NSC, v6-5,
B_cell, Brain, Liver,
Skin_tumor, BMDC, R1E,
Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
6597	ENSMUST00000194701	Rhoa-205	protein_coding	Ribo-seq	weak	8	sORFs_org_Mouse
5990	ENSMUST00000007959	Rhoa-201	protein_coding	Ribo-seq	weak	6	sORFs_org_Mouse
269794	ENSMUST00000193424	Rhoa-202	retained_intron	Ribo-seq	weak	5	sORFs_org_Mouse

87364

ATG...

MCP...

ATG

sORF
Alternative
InCDS
Overlapping

Brain, E14, Testis,
B_cell, BMDC, Glioma,
Liver, MEF, MESC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
84454	ENSMUST00000193490	Rhoa-203	protein_coding	Ribo-seq		3	sORFs_org_Mouse
5990	ENSMUST00000007959	Rhoa-201	protein_coding	Ribo-seq		3	sORFs_org_Mouse Johnstone2016

84453

ATG...

MCP...

ATG

sORF
Alternative
InCDS
Overlapping

BMDC, Brain, B_cell,
E14, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
6597	ENSMUST00000194701	Rhoa-205	protein_coding	Ribo-seq		2	sORFs_org_Mouse
5990	ENSMUST00000007959	Rhoa-201	protein_coding	Ribo-seq		2	sORFs_org_Mouse
84454	ENSMUST00000193490	Rhoa-203	protein_coding	Ribo-seq		3	sORFs_org_Mouse

1523392

ATG...

MGH...

ATG

sORF
Alternative
InCDS
Overlapping

NSC, MEF, Glioma,
Liver, MESC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
84454	ENSMUST00000193490	Rhoa-203	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse
6597	ENSMUST00000194701	Rhoa-205	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse
5990	ENSMUST00000007959	Rhoa-201	protein_coding	Ribo-seq	moderate	1	Johnstone2016

435129

ATG...

MDS...

ATG

sORF
Alternative
InCDS
Overlapping
Intronic

E14, MEF, Neutrophil,
NSC, B_cell, Glioma,
Liver, MESC, BMDC,
Brain, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
6597	ENSMUST00000194701	Rhoa-205	protein_coding	Ribo-seq	strong	6	sORFs_org_Mouse
5990	ENSMUST00000007959	Rhoa-201	protein_coding	Ribo-seq	strong	3	sORFs_org_Mouse Johnstone2016
269794	ENSMUST00000193424	Rhoa-202	retained_intron	Ribo-seq	strong	3	sORFs_org_Mouse

1273091

ACG...

TRR...

ACG

Intronic
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
269794	ENSMUST00000193424	Rhoa-202	retained_intron	Ribo-seq		1	sORFs_org_Mouse

417515

TTG...

LKT...

TTG

sORF

E14, BMDC, C2C12

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
84454	ENSMUST00000193490	Rhoa-203	protein_coding	Ribo-seq		1	sORFs_org_Mouse
6597	ENSMUST00000194701	Rhoa-205	protein_coding	Ribo-seq		2	sORFs_org_Mouse

6596

TTG...

LGT...

TTG

Alternative
InCDS
Overlapping
sORF
Intronic

B_cell, Brain, Liver,
MEF, BMDC, E14,
R1E, Spleen_B_cell, 3T3,
Neutrophil, NSC, Skin_tumor,
Testis, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
5990	ENSMUST00000007959	Rhoa-201	protein_coding	Ribo-seq	moderate	6	sORFs_org_Mouse
269794	ENSMUST00000193424	Rhoa-202	retained_intron	Ribo-seq	moderate	5	sORFs_org_Mouse
6597	ENSMUST00000194701	Rhoa-205	protein_coding	Ribo-seq	moderate	13	sORFs_org_Mouse

1273308

105

AAG...

KKD...

AAG

Intronic
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
269794	ENSMUST00000193424	Rhoa-202	retained_intron	Ribo-seq		1	sORFs_org_Mouse

1270943

CTG...

LRP...

CTG

Intronic
sORF

Brain, E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
269794	ENSMUST00000193424	Rhoa-202	retained_intron	Ribo-seq		2	sORFs_org_Mouse

87965

TTG...

LAR...

TTG

Alternative
sORF
Upstream

3T3, B_cell, Brain,
E14, Liver, MEF,
Neutrophil, NSC, R1E,
Spleen_B_cell, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
5990	ENSMUST00000007959	Rhoa-201	protein_coding	Ribo-seq		15	sORFs_org_Mouse

1524254

GTG...

VKP...

GTG

Alternative
Downstream
Overlapping
sORF

NSC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
5990	ENSMUST00000007959	Rhoa-201	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse

1330971

ATG...

MLH...

ATG

sORF
Upstream

E14, Glioma, Liver,
MEF, MESC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
5990	ENSMUST00000007959	Rhoa-201	protein_coding	Ribo-seq	moderate	2	sORFs_org_Mouse Johnstone2016

759618

234

CTG...

LAP...

CTG

sORF
Upstream

B_cell, Neutrophil

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
5990	ENSMUST00000007959	Rhoa-201	protein_coding	Ribo-seq	moderate	2	sORFs_org_Mouse

1275439

120

ATA...

IAR...

ATA

Alternative
sORF
Upstream

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
5990	ENSMUST00000007959	Rhoa-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse

1273509

AGG...

RSM...

AGG

sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
84454	ENSMUST00000193490	Rhoa-203	protein_coding	Ribo-seq		1	sORFs_org_Mouse

1275621

AGG...

RSM...

AGG

sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
84454	ENSMUST00000193490	Rhoa-203	protein_coding	Ribo-seq		1	sORFs_org_Mouse

86642

CTG...

LPV...

CTG

sORF
Upstream
Intronic

B_cell, BMDC, Brain,
Liver, Testis, 3T3,
E14, MEF, Neutrophil,
NSC, R1E, Spleen_B_cell,
v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
5990	ENSMUST00000007959	Rhoa-201	protein_coding	Ribo-seq	moderate	7	sORFs_org_Mouse
436599	ENSMUST00000193619	Rhoa-204	retained_intron	Ribo-seq	moderate	13	sORFs_org_Mouse

1571007

123

TTG...

LAL...

TTG

Intronic
sORF

Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
269794	ENSMUST00000193424	Rhoa-202	retained_intron	Ribo-seq		1	sORFs_org_Mouse

1479221

129

GTG...

VPI...

GTG

Intronic
sORF

BMDC, Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
269794	ENSMUST00000193424	Rhoa-202	retained_intron	Ribo-seq		2	sORFs_org_Mouse

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