Gene NCBI:113868 | MetamORF

Gene

ID CARD

NCBI:113868

Aliases

Acaa
Acaa1, Acaa1a, D9Ertd25e
ENSMUSG00000036138, MGI:2148491, NCBI:113868
OFF:Acaa1a, PTL

Chromosome

Transcripts

39 ORFs
9 known transcripts
97 ORF to known transcript associations

MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

ORFs

Display all the transcripts related to the entry.

435656

ENSMUST00000176351

Acaa1a-206

protein_coding

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
269251	39	CTG ...	LFL ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	sORF	3T3, B_cell, Liver, Spleen_B_cell
883190	69	CTG ...	LRL ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	sORF	Liver, MEF
923948	147	ATT ...	IPV ...	Ribo-seq	ATT	moderate	1	sORFs_org_Mouse	sORF	E14
622879	57	CTG ...	LRL ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	sORF	3T3, Liver, MEF
622786	51	CTG ...	LPS ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	sORF	3T3, Liver, MEF
883761	129	CTG ...	LHP ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	sORF	Liver
884187	63	CTG ...	LRL ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	sORF	Liver, MEF
885234	141	CTG ...	LRP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF	Liver
884303	87	CTG ...	LRL ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	sORF	Liver
434197	108	CTG ...	LRP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF	Liver

1749716

ENSMUST00000176007

Acaa1a-205

retained_intron

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
884512	48	CTG ...	LLE ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	MEF
883208	69	GTG ...	VAE ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	MEF
883571	45	CTG ...	LES ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	MEF
884658	102	GTG ...	VES ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	MEF
884123	87	CTG ...	LSG ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	MEF

625181

ENSMUST00000039784

Acaa1a-201

protein_coding

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
267798	54	ATG ...	MFL ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell
6779	42	CTG ...	LPD ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Liver, R1E, v6-5
271646	105	TTG ...	LAW ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Liver
268244	48	TTG ...	LSQ ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell
270766	93	GTG ...	VGW ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Liver
884967	132	GTG ...	VAS ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver
254653	54	CTG ...	LGI ...	Ribo-seq	CTG	strong	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, E14
885468	120	ATG ...	MGL ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver
260388	30	CTG ...	LSW ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell
885553	111	ATG ...	MTL ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver

434198

ENSMUST00000176397

Acaa1a-207

protein_coding

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
434197	108	CTG ...	LRP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Spleen_B_cell
925171	84	AGG ...	RMT ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
885406	114	CTG ...	LSG ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Liver
267798	54	ATG ...	MFL ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	Glioma, Liver, MEF, MESC, Spleen_B_cell
885368	120	ATG ...	MWL ...	Ribo-seq	ATG		2	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	Glioma, Liver, MEF, MESC
884626	87	ATG ...	MTR ...	Ribo-seq	ATG	weak	1	Johnstone2016	InCDS Overlapping sORF	Glioma, Liver, MEF, MESC

921696

ENSMUST00000176796

Acaa1a-209

retained_intron

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
883190	69	CTG ...	LRL ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	Liver
622879	57	CTG ...	LRL ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	Liver
622786	51	CTG ...	LPS ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	Liver
884658	102	GTG ...	VES ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Intronic sORF	Brain, Liver, R1E
923963	48	ATG ...	MRV ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Intronic sORF	BMDC
922624	177	CTG ...	LSG ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	BMDC
923774	270	ATT ...	IVP ...	Ribo-seq	ATT		1	sORFs_org_Mouse	Intronic sORF	BMDC
269251	39	CTG ...	LFL ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	BMDC
884123	87	CTG ...	LSG ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Intronic sORF	BMDC, Brain, Liver, R1E
265220	69	CTG ...	LGW ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Intronic sORF	Liver, R1E
884343	96	CTG ...	LSW ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Intronic sORF	BMDC, Liver
883761	129	CTG ...	LHP ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	BMDC
883208	69	GTG ...	VAE ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Intronic sORF	Brain, Liver, R1E
267798	54	ATG ...	MFL ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Intronic sORF	BMDC, R1E
922994	30	AAG ...	KLC ...	Ribo-seq	AAG	weak	1	sORFs_org_Mouse	Intronic sORF	BMDC
254653	54	CTG ...	LGI ...	Ribo-seq	CTG	strong	2	sORFs_org_Mouse	Intronic sORF	Liver, R1E
923732	102	AGG ...	RTH ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Intronic sORF	BMDC
883571	45	CTG ...	LES ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Intronic sORF	Brain, Liver, R1E
884187	63	CTG ...	LRL ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	Liver
260388	30	CTG ...	LSW ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	R1E
1386879	81	CTG ...	LRP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Liver
884626	87	ATG ...	MTR ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	Intronic sORF	BMDC, Liver
923948	147	ATT ...	IPV ...	Ribo-seq	ATT	moderate	1	sORFs_org_Mouse	Intronic sORF	BMDC
268244	48	TTG ...	LSQ ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Intronic sORF	R1E
884512	48	CTG ...	LLE ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Intronic sORF	Brain, Liver, R1E

6780

ENSMUST00000175743

Acaa1a-203

protein_coding

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
271646	105	TTG ...	LAW ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Brain, Liver
884343	96	CTG ...	LSW ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
884626	87	ATG ...	MTR ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
6779	42	CTG ...	LPD ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Liver, MEF, Skin_tumor
434197	108	CTG ...	LRP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
438949	75	CTG ...	LWG ...	Ribo-seq	CTG		3	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, NSC, Spleen_B_cell
885553	111	ATG ...	MTL ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Liver
260388	30	CTG ...	LSW ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
885234	141	CTG ...	LRP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
267798	54	ATG ...	MFL ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
270766	93	GTG ...	VGW ...	Ribo-seq	GTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Brain, Liver, MEF, Spleen_B_cell
885468	120	ATG ...	MGL ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
883750	78	GTG ...	VTR ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
268244	48	TTG ...	LSQ ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
265220	69	CTG ...	LGW ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, Neutrophil, NSC

3155043

UNKNOWN_TRANSCRIPT

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
885468	120	ATG ...	MGL ...	Predicted	ATG		1	Samandi2017	sORF
885368	120	ATG ...	MWL ...	Predicted	ATG		1	Samandi2017	sORF

883209

ENSMUST00000176546

Acaa1a-208

nonsense_mediated_decay

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
265220	69	CTG ...	LGW ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	NMD sORF	Liver
884626	87	ATG ...	MTR ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	NMD sORF	Liver
883208	69	GTG ...	VAE ...	Ribo-seq	GTG		1	sORFs_org_Mouse	NMD sORF	Liver
883750	78	GTG ...	VTR ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	NMD sORF	Liver
883571	45	CTG ...	LES ...	Ribo-seq	CTG		2	sORFs_org_Mouse	NMD sORF	Liver
254653	54	CTG ...	LGI ...	Ribo-seq	CTG	strong	2	sORFs_org_Mouse	NMD sORF	Liver
884512	48	CTG ...	LLE ...	Ribo-seq	CTG		2	sORFs_org_Mouse	NMD sORF	Liver
884658	102	GTG ...	VES ...	Ribo-seq	GTG		2	sORFs_org_Mouse	NMD sORF	Liver
884123	87	CTG ...	LSG ...	Ribo-seq	CTG		2	sORFs_org_Mouse	NMD sORF	Liver
884343	96	CTG ...	LSW ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	NMD sORF	Liver

254654

ENSMUST00000177463

Acaa1a-210

protein_coding

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
265220	69	CTG ...	LGW ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	sORF	3T3, Brain
267798	54	ATG ...	MFL ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	sORF	3T3, Brain
260388	30	CTG ...	LSW ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	sORF	3T3
268244	48	TTG ...	LSQ ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	sORF	3T3, Brain
884303	87	CTG ...	LRL ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	sORF	Liver
883761	129	CTG ...	LHP ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	sORF	Liver
269251	39	CTG ...	LFL ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	sORF	Brain, MEF
438949	75	CTG ...	LWG ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF	Liver
254653	54	CTG ...	LGI ...	Ribo-seq	CTG	strong	2	sORFs_org_Mouse	sORF	3T3, Brain
6779	42	CTG ...	LPD ...	Ribo-seq	CTG		2	sORFs_org_Mouse	sORF	3T3, Brain

883067

ENSMUST00000175859

Acaa1a-204

retained_intron

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
260388	30	CTG ...	LSW ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Intronic sORF	E14, Liver
267798	54	ATG ...	MFL ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse	Intronic sORF	E14, Liver
434197	108	CTG ...	LRP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Liver
269251	39	CTG ...	LFL ...	Ribo-seq	CTG		6	sORFs_org_Mouse	Intronic sORF	E14, Liver, MEF, Neutrophil, NSC
883761	129	CTG ...	LHP ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Intronic sORF	E14, Liver
268244	48	TTG ...	LSQ ...	Ribo-seq	TTG	weak	4	sORFs_org_Mouse	Intronic sORF	E14, Liver, MEF

ORFs

39 ORFs
9 known transcripts
97 ORF to known transcript associations

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF Length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Start codon

The start codon sequence of the ORF.

ORF annotations

A comma-separated list of all the annotations computed by our algorithm for the ORF. This list includes the annotations computed for the ORF for all transcripts. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of all the cell types in which the ORF has already been identified.

Transcripts

Display all the transcripts related to the entry.

269251

CTG...

LFL...

CTG

sORF
Intronic

3T3, B_cell, Liver,
Spleen_B_cell, BMDC, Brain,
MEF, E14, Neutrophil,
NSC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
435656	ENSMUST00000176351	Acaa1a-206	protein_coding	Ribo-seq	weak	4	sORFs_org_Mouse
921696	ENSMUST00000176796	Acaa1a-209	retained_intron	Ribo-seq	weak	1	sORFs_org_Mouse
254654	ENSMUST00000177463	Acaa1a-210	protein_coding	Ribo-seq	weak	2	sORFs_org_Mouse
883067	ENSMUST00000175859	Acaa1a-204	retained_intron	Ribo-seq		6	sORFs_org_Mouse

884512

CTG...

LLE...

CTG

Intronic
sORF
NMD

MEF, Liver, Brain,
R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
1749716	ENSMUST00000176007	Acaa1a-205	retained_intron	Ribo-seq		1	sORFs_org_Mouse
883209	ENSMUST00000176546	Acaa1a-208	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse
921696	ENSMUST00000176796	Acaa1a-209	retained_intron	Ribo-seq		3	sORFs_org_Mouse

267798

ATG...

MFL...

ATG

Alternative
InCDS
Overlapping
sORF
Intronic

B_cell, 3T3, Brain,
E14, Liver, BMDC,
R1E, Glioma, MEF,
MESC, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
625181	ENSMUST00000039784	Acaa1a-201	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse
254654	ENSMUST00000177463	Acaa1a-210	protein_coding	Ribo-seq	moderate	2	sORFs_org_Mouse
883067	ENSMUST00000175859	Acaa1a-204	retained_intron	Ribo-seq	moderate	3	sORFs_org_Mouse
921696	ENSMUST00000176796	Acaa1a-209	retained_intron	Ribo-seq	moderate	2	sORFs_org_Mouse
6780	ENSMUST00000175743	Acaa1a-203	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse
434198	ENSMUST00000176397	Acaa1a-207	protein_coding	Ribo-seq	moderate	2	sORFs_org_Mouse Johnstone2016

434197

108

CTG...

LRP...

CTG

Alternative
InCDS
Overlapping
sORF
Intronic

Spleen_B_cell, BMDC, Liver

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
434198	ENSMUST00000176397	Acaa1a-207	protein_coding	Ribo-seq		1	sORFs_org_Mouse
6780	ENSMUST00000175743	Acaa1a-203	protein_coding	Ribo-seq		1	sORFs_org_Mouse
883067	ENSMUST00000175859	Acaa1a-204	retained_intron	Ribo-seq		1	sORFs_org_Mouse
435656	ENSMUST00000176351	Acaa1a-206	protein_coding	Ribo-seq		1	sORFs_org_Mouse

883190

CTG...

LRL...

CTG

Intronic
sORF

Liver, MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
921696	ENSMUST00000176796	Acaa1a-209	retained_intron	Ribo-seq	weak	1	sORFs_org_Mouse
435656	ENSMUST00000176351	Acaa1a-206	protein_coding	Ribo-seq	weak	2	sORFs_org_Mouse

6779

CTG...

LPD...

CTG

Alternative
InCDS
Overlapping
sORF

B_cell, Liver, R1E,
v6-5, BMDC, MEF,
Skin_tumor, 3T3, Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
625181	ENSMUST00000039784	Acaa1a-201	protein_coding	Ribo-seq		4	sORFs_org_Mouse
6780	ENSMUST00000175743	Acaa1a-203	protein_coding	Ribo-seq		5	sORFs_org_Mouse
254654	ENSMUST00000177463	Acaa1a-210	protein_coding	Ribo-seq		2	sORFs_org_Mouse

271646

105

TTG...

LAW...

TTG

Alternative
InCDS
Overlapping
sORF

BMDC, Brain, Liver,
3T3

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
6780	ENSMUST00000175743	Acaa1a-203	protein_coding	Ribo-seq		3	sORFs_org_Mouse
625181	ENSMUST00000039784	Acaa1a-201	protein_coding	Ribo-seq		2	sORFs_org_Mouse

884343

CTG...

LSW...

CTG

InCDS
Overlapping
sORF
Intronic
NMD

BMDC, Liver

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
6780	ENSMUST00000175743	Acaa1a-203	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse
921696	ENSMUST00000176796	Acaa1a-209	retained_intron	Ribo-seq	weak	2	sORFs_org_Mouse
883209	ENSMUST00000176546	Acaa1a-208	nonsense_mediated_decay	Ribo-seq	weak	1	sORFs_org_Mouse

885468

120

ATG...

MGL...

ATG

sORF
Alternative
InCDS
Overlapping

BMDC, Liver

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
3155043	UNKNOWN_TRANSCRIPT			Predicted		1	Samandi2017
6780	ENSMUST00000175743	Acaa1a-203	protein_coding	Ribo-seq		1	sORFs_org_Mouse
625181	ENSMUST00000039784	Acaa1a-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse

622879

CTG...

LRL...

CTG

Intronic
sORF

Liver, 3T3, MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
921696	ENSMUST00000176796	Acaa1a-209	retained_intron	Ribo-seq	weak	1	sORFs_org_Mouse
435656	ENSMUST00000176351	Acaa1a-206	protein_coding	Ribo-seq	weak	3	sORFs_org_Mouse

265220

CTG...

LGW...

CTG

NMD
sORF
Intronic
Alternative
InCDS
Overlapping

Liver, 3T3, Brain,
R1E, MEF, Neutrophil,
NSC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
883209	ENSMUST00000176546	Acaa1a-208	nonsense_mediated_decay	Ribo-seq	moderate	2	sORFs_org_Mouse
254654	ENSMUST00000177463	Acaa1a-210	protein_coding	Ribo-seq	moderate	2	sORFs_org_Mouse
921696	ENSMUST00000176796	Acaa1a-209	retained_intron	Ribo-seq	moderate	2	sORFs_org_Mouse
6780	ENSMUST00000175743	Acaa1a-203	protein_coding	Ribo-seq	moderate	3	sORFs_org_Mouse

622786

CTG...

LPS...

CTG

Intronic
sORF

Liver, 3T3, MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
921696	ENSMUST00000176796	Acaa1a-209	retained_intron	Ribo-seq	weak	1	sORFs_org_Mouse
435656	ENSMUST00000176351	Acaa1a-206	protein_coding	Ribo-seq	weak	3	sORFs_org_Mouse

884658

102

GTG...

VES...

GTG

Intronic
sORF
NMD

Brain, Liver, R1E,
MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
921696	ENSMUST00000176796	Acaa1a-209	retained_intron	Ribo-seq		3	sORFs_org_Mouse
883209	ENSMUST00000176546	Acaa1a-208	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse
1749716	ENSMUST00000176007	Acaa1a-205	retained_intron	Ribo-seq		1	sORFs_org_Mouse

923963

ATG...

MRV...

ATG

Intronic
sORF

BMDC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
921696	ENSMUST00000176796	Acaa1a-209	retained_intron	Ribo-seq	moderate	1	sORFs_org_Mouse

884626

ATG...

MTR...

ATG

InCDS
Overlapping
sORF
NMD
Intronic

BMDC, Liver, Glioma,
MEF, MESC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
6780	ENSMUST00000175743	Acaa1a-203	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse
883209	ENSMUST00000176546	Acaa1a-208	nonsense_mediated_decay	Ribo-seq	weak	1	sORFs_org_Mouse
921696	ENSMUST00000176796	Acaa1a-209	retained_intron	Ribo-seq	weak	2	sORFs_org_Mouse
434198	ENSMUST00000176397	Acaa1a-207	protein_coding	Ribo-seq	weak	1	Johnstone2016

922624

177

CTG...

LSG...

CTG

Intronic
sORF

BMDC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
921696	ENSMUST00000176796	Acaa1a-209	retained_intron	Ribo-seq		1	sORFs_org_Mouse

883208

GTG...

VAE...

GTG

NMD
sORF
Intronic

Liver, Brain, R1E,
MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
883209	ENSMUST00000176546	Acaa1a-208	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse
921696	ENSMUST00000176796	Acaa1a-209	retained_intron	Ribo-seq		3	sORFs_org_Mouse
1749716	ENSMUST00000176007	Acaa1a-205	retained_intron	Ribo-seq		1	sORFs_org_Mouse

885368

120

ATG...

MWL...

ATG

sORF
Alternative
InCDS
Overlapping

Glioma, Liver,
MEF, MESC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
3155043	UNKNOWN_TRANSCRIPT			Predicted		1	Samandi2017
434198	ENSMUST00000176397	Acaa1a-207	protein_coding	Ribo-seq		2	sORFs_org_Mouse Johnstone2016

923774

270

ATT...

IVP...

ATT

Intronic
sORF

BMDC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
921696	ENSMUST00000176796	Acaa1a-209	retained_intron	Ribo-seq		1	sORFs_org_Mouse

883750

GTG...

VTR...

GTG

NMD
sORF
InCDS
Overlapping

Liver, BMDC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
883209	ENSMUST00000176546	Acaa1a-208	nonsense_mediated_decay	Ribo-seq	moderate	1	sORFs_org_Mouse
6780	ENSMUST00000175743	Acaa1a-203	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse

925171

AGG...

RMT...

AGG

Alternative
InCDS
Overlapping
sORF

BMDC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
434198	ENSMUST00000176397	Acaa1a-207	protein_coding	Ribo-seq		1	sORFs_org_Mouse

260388

CTG...

LSW...

CTG

sORF
Intronic
Alternative
InCDS
Overlapping

3T3, E14, Liver,
Brain, R1E, B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
254654	ENSMUST00000177463	Acaa1a-210	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse
883067	ENSMUST00000175859	Acaa1a-204	retained_intron	Ribo-seq	moderate	2	sORFs_org_Mouse
6780	ENSMUST00000175743	Acaa1a-203	protein_coding	Ribo-seq	moderate	2	sORFs_org_Mouse
921696	ENSMUST00000176796	Acaa1a-209	retained_intron	Ribo-seq	moderate	1	sORFs_org_Mouse
625181	ENSMUST00000039784	Acaa1a-201	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse

268244

TTG...

LSQ...

TTG

sORF
Alternative
InCDS
Overlapping
Intronic

3T3, Brain, B_cell,
E14, Liver, MEF,
R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
254654	ENSMUST00000177463	Acaa1a-210	protein_coding	Ribo-seq	weak	2	sORFs_org_Mouse
625181	ENSMUST00000039784	Acaa1a-201	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse
883067	ENSMUST00000175859	Acaa1a-204	retained_intron	Ribo-seq	weak	4	sORFs_org_Mouse
921696	ENSMUST00000176796	Acaa1a-209	retained_intron	Ribo-seq	weak	1	sORFs_org_Mouse
6780	ENSMUST00000175743	Acaa1a-203	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse

884123

CTG...

LSG...

CTG

Intronic
sORF
NMD

BMDC, Brain, Liver,
R1E, MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
921696	ENSMUST00000176796	Acaa1a-209	retained_intron	Ribo-seq		4	sORFs_org_Mouse
1749716	ENSMUST00000176007	Acaa1a-205	retained_intron	Ribo-seq		1	sORFs_org_Mouse
883209	ENSMUST00000176546	Acaa1a-208	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse

883571

CTG...

LES...

CTG

NMD
sORF
Intronic

Liver, MEF, Brain,
R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
883209	ENSMUST00000176546	Acaa1a-208	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse
1749716	ENSMUST00000176007	Acaa1a-205	retained_intron	Ribo-seq		1	sORFs_org_Mouse
921696	ENSMUST00000176796	Acaa1a-209	retained_intron	Ribo-seq		3	sORFs_org_Mouse

438949

CTG...

LWG...

CTG

InCDS
Overlapping
sORF

BMDC, NSC, Spleen_B_cell,
Liver

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
6780	ENSMUST00000175743	Acaa1a-203	protein_coding	Ribo-seq		3	sORFs_org_Mouse
254654	ENSMUST00000177463	Acaa1a-210	protein_coding	Ribo-seq		1	sORFs_org_Mouse

923948

147

ATT...

IPV...

ATT

sORF
Intronic

E14, BMDC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
435656	ENSMUST00000176351	Acaa1a-206	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse
921696	ENSMUST00000176796	Acaa1a-209	retained_intron	Ribo-seq	moderate	1	sORFs_org_Mouse

883761

129

CTG...

LHP...

CTG

Intronic
sORF

BMDC, Liver, E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
921696	ENSMUST00000176796	Acaa1a-209	retained_intron	Ribo-seq	moderate	1	sORFs_org_Mouse
254654	ENSMUST00000177463	Acaa1a-210	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse
435656	ENSMUST00000176351	Acaa1a-206	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse
883067	ENSMUST00000175859	Acaa1a-204	retained_intron	Ribo-seq	moderate	2	sORFs_org_Mouse

254653

CTG...

LGI...

CTG

NMD
sORF
Intronic
Alternative
InCDS
Overlapping

Liver, R1E, 3T3,
Brain, B_cell, E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
883209	ENSMUST00000176546	Acaa1a-208	nonsense_mediated_decay	Ribo-seq	strong	2	sORFs_org_Mouse
921696	ENSMUST00000176796	Acaa1a-209	retained_intron	Ribo-seq	strong	2	sORFs_org_Mouse
254654	ENSMUST00000177463	Acaa1a-210	protein_coding	Ribo-seq	strong	2	sORFs_org_Mouse
625181	ENSMUST00000039784	Acaa1a-201	protein_coding	Ribo-seq	strong	2	sORFs_org_Mouse

885553

111

ATG...

MTL...

ATG

Alternative
InCDS
Overlapping
sORF

BMDC, Liver

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
6780	ENSMUST00000175743	Acaa1a-203	protein_coding	Ribo-seq		2	sORFs_org_Mouse
625181	ENSMUST00000039784	Acaa1a-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse

922994

AAG...

KLC...

AAG

Intronic
sORF

BMDC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
921696	ENSMUST00000176796	Acaa1a-209	retained_intron	Ribo-seq	weak	1	sORFs_org_Mouse

884303

CTG...

LRL...

CTG

sORF

Liver

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
254654	ENSMUST00000177463	Acaa1a-210	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse
435656	ENSMUST00000176351	Acaa1a-206	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse

885234

141

CTG...

LRP...

CTG

Alternative
InCDS
Overlapping
sORF

BMDC, Liver

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
6780	ENSMUST00000175743	Acaa1a-203	protein_coding	Ribo-seq		1	sORFs_org_Mouse
435656	ENSMUST00000176351	Acaa1a-206	protein_coding	Ribo-seq		1	sORFs_org_Mouse

270766

GTG...

VGW...

GTG

Alternative
InCDS
Overlapping
sORF

BMDC, Brain, Liver,
MEF, Spleen_B_cell, 3T3

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
6780	ENSMUST00000175743	Acaa1a-203	protein_coding	Ribo-seq		5	sORFs_org_Mouse
625181	ENSMUST00000039784	Acaa1a-201	protein_coding	Ribo-seq		2	sORFs_org_Mouse

923732

102

AGG...

RTH...

AGG

Intronic
sORF

BMDC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
921696	ENSMUST00000176796	Acaa1a-209	retained_intron	Ribo-seq	moderate	1	sORFs_org_Mouse

884187

CTG...

LRL...

CTG

sORF
Intronic

Liver, MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
435656	ENSMUST00000176351	Acaa1a-206	protein_coding	Ribo-seq	weak	2	sORFs_org_Mouse
921696	ENSMUST00000176796	Acaa1a-209	retained_intron	Ribo-seq	weak	1	sORFs_org_Mouse

884967

132

GTG...

VAS...

GTG

Alternative
InCDS
Overlapping
sORF

Liver

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
625181	ENSMUST00000039784	Acaa1a-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse

885406

114

CTG...

LSG...

CTG

Alternative
InCDS
Overlapping
sORF

BMDC, Liver

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
434198	ENSMUST00000176397	Acaa1a-207	protein_coding	Ribo-seq		2	sORFs_org_Mouse

1386879

CTG...

LRP...

CTG

Intronic
sORF

Liver

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
921696	ENSMUST00000176796	Acaa1a-209	retained_intron	Ribo-seq		1	sORFs_org_Mouse

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