Gene NCBI:111368 | MetamORF

Gene

ID CARD

NCBI:111368

Aliases

ENSMUSG00000098754
Gm28045, Gm44637, MGI:97767
NCBI:111368, OFF:Prn, Prn
Prnp-Prnd

Chromosome

Transcripts

6 ORFs
2 known transcripts
12 ORF to known transcript associations

MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

ORFs

Display all the transcripts related to the entry.

44946

ENSMUST00000136783

Prn-202

protein_coding

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
45913	51	GTG ...	VVP ...	Ribo-seq	GTG		4	sORFs_org_Mouse	sORF Upstream	3T3, E14, Liver, Testis
50768	48	GTG ...	VVP ...	Ribo-seq	GTG		5	sORFs_org_Mouse	sORF Upstream	3T3, Brain, E14, Liver, Testis
50552	69	CTG ...	LKH ...	Ribo-seq	CTG		5	sORFs_org_Mouse	sORF Upstream	3T3, Brain, E14, Liver, Testis
113516	60	CTG ...	LNH ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	Alternative sORF Upstream	3T3, Brain, E14, Liver
741658	36	CTG ...	LGA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF Upstream	3T3
44945	72	CTG ...	LKH ...	Ribo-seq	CTG		4	sORFs_org_Mouse	sORF Upstream	3T3, E14, Liver, Testis

99689

ENSMUST00000124100

Prn-201

protein_coding

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
45913	51	GTG ...	VVP ...	Ribo-seq	GTG		3	sORFs_org_Mouse	sORF Upstream	Brain, MEF, NSC
44945	72	CTG ...	LKH ...	Ribo-seq	CTG		5	sORFs_org_Mouse	sORF Upstream	E14, MEF, NSC, v6-5
50768	48	GTG ...	VVP ...	Ribo-seq	GTG		3	sORFs_org_Mouse	sORF Upstream	Brain, MEF, NSC
113516	60	CTG ...	LNH ...	Ribo-seq	CTG	moderate	9	sORFs_org_Mouse	Alternative sORF Upstream	B_cell, BMDC, E14, MEF, NSC, v6-5
50552	69	CTG ...	LKH ...	Ribo-seq	CTG		5	sORFs_org_Mouse	sORF Upstream	Brain, E14, MEF, NSC, v6-5
741658	36	CTG ...	LGA ...	Ribo-seq	CTG		7	sORFs_org_Mouse	sORF Upstream	B_cell, MEF, Neutrophil, NSC, v6-5

ORFs

6 ORFs
2 known transcripts
12 ORF to known transcript associations

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF Length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Start codon

The start codon sequence of the ORF.

ORF annotations

A comma-separated list of all the annotations computed by our algorithm for the ORF. This list includes the annotations computed for the ORF for all transcripts. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of all the cell types in which the ORF has already been identified.

Transcripts

Display all the transcripts related to the entry.

45913

GTG...

VVP...

GTG

sORF
Upstream
ncRNA

3T3, E14, Liver,
Testis, Brain, MEF,
NSC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
44946	ENSMUST00000136783	Prn-202	protein_coding	Ribo-seq		4	sORFs_org_Mouse
99689	ENSMUST00000124100	Prn-201	protein_coding	Ribo-seq		3	sORFs_org_Mouse
95288	ENSMUST00000142070	Prnp-202	processed_transcript	Ribo-seq		1	sORFs_org_Mouse

44945

CTG...

LKH...

CTG

Alternative
sORF
Upstream
ncRNA

C2C12, E14, MEF,
NSC, v6-5, Brain,
3T3, Liver, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
93106	ENSMUST00000091288	Prnp-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse
99689	ENSMUST00000124100	Prn-201	protein_coding	Ribo-seq		5	sORFs_org_Mouse
95288	ENSMUST00000142070	Prnp-202	processed_transcript	Ribo-seq		2	sORFs_org_Mouse
44946	ENSMUST00000136783	Prn-202	protein_coding	Ribo-seq		4	sORFs_org_Mouse

50768

GTG...

VVP...

GTG

sORF
Upstream

3T3, Brain, E14,
Liver, Testis, MEF,
NSC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
44946	ENSMUST00000136783	Prn-202	protein_coding	Ribo-seq		5	sORFs_org_Mouse
99689	ENSMUST00000124100	Prn-201	protein_coding	Ribo-seq		3	sORFs_org_Mouse

113516

CTG...

LNH...

CTG

Alternative
sORF
Upstream
ncRNA

B_cell, BMDC, E14,
MEF, NSC, v6-5,
3T3, Brain, Liver

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
99689	ENSMUST00000124100	Prn-201	protein_coding	Ribo-seq	moderate	9	sORFs_org_Mouse
44946	ENSMUST00000136783	Prn-202	protein_coding	Ribo-seq	moderate	4	sORFs_org_Mouse
93106	ENSMUST00000091288	Prnp-201	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse
95288	ENSMUST00000142070	Prnp-202	processed_transcript	Ribo-seq	moderate	3	sORFs_org_Mouse

50552

CTG...

LKH...

CTG

sORF
Upstream

3T3, Brain, E14,
Liver, Testis, MEF,
NSC, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
44946	ENSMUST00000136783	Prn-202	protein_coding	Ribo-seq		5	sORFs_org_Mouse
99689	ENSMUST00000124100	Prn-201	protein_coding	Ribo-seq		5	sORFs_org_Mouse

741658

CTG...

LGA...

CTG

sORF
Upstream

3T3, B_cell, MEF,
Neutrophil, NSC, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
44946	ENSMUST00000136783	Prn-202	protein_coding	Ribo-seq		1	sORFs_org_Mouse
99689	ENSMUST00000124100	Prn-201	protein_coding	Ribo-seq		7	sORFs_org_Mouse

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