Metam
ORF

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Gene

Gene

ID CARD

ID

NCBI:110391

Aliases

2610008L04Rik
D5Ertd371e, Dhpr, ENSMUSG00000015806
MGI:97836, NCBI:110391, OFF:Qdpr
PKU2, Qdpr

Chromosome

5

Transcripts

70 ORFs
10 known transcripts
175 ORF to known transcript associations

MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

ORFs

Display all the transcripts related to the entry.

61422 ENSMUST00000118097 Qdpr-203 protein_coding
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

65625 90

GTG ...

VTR ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Testis
1382817 33

ATG ...

MGR ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
67027 285

GTG ...

VAV ...

Ribo-seq
GTG

3 sORFs_org_Mouse
    CDS
    sORF
E14, Neutrophil, Testis
522758 36

CTG ...

LGL ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
180097 45

ATG ...

MTG ...

Ribo-seq
ATG

weak

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, v6-5
67386 93

GTG ...

VTR ...

Ribo-seq
GTG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, Testis
64014 48

GTG ...

VAC ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
574754 60

CTG ...

LED ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
171144 30

CTG ...

LLP ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
175251 105

ATG ...

MAW ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
176104 159

GTG ...

VRL ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    sORF
    Upstream
B_cell
61619 48

ATG ...

MWW ...

Ribo-seq
ATG

weak

6 sORFs_org_Mouse
    Overlapping
    sORF
    Upstream
B_cell, E14, MEF,
Neutrophil, NSC, Testis
66930 78

ATG ...

MQF ...

Ribo-seq
ATG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, Testis
182506 153

TTG ...

LGS ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    sORF
    Upstream
B_cell
67432 216

ATG ...

MTH ...

Ribo-seq
ATG

7 sORFs_org_Mouse
    CDS
    sORF
BMDC, E14, MEF,
Neutrophil, NSC, Testis,
v6-5
61837 48

CTG ...

LCG ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Testis
62719 75

ATG ...

MQF ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Testis
67132 270

TTG ...

LSF ...

Ribo-seq
TTG

4 sORFs_org_Mouse
    CDS
    sORF
BMDC, E14, Neutrophil,
Testis
66247 114

CTG ...

LSG ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
B_cell, Testis
67317 276

CTG ...

LCL ...

Ribo-seq
CTG

4 sORFs_org_Mouse
    CDS
    sORF
BMDC, E14, Neutrophil,
Testis
66392 279

GTG ...

VLC ...

Ribo-seq
GTG

3 sORFs_org_Mouse
    CDS
    sORF
E14, Neutrophil, Testis
189132 120

ATG ...

MAW ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
175353 105

GTG ...

VDI ...

Ribo-seq
GTG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, MEF
1313627 51

CTG ...

LGL ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
186663 63

GTG ...

VAC ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
182229 138

CTG ...

LDH ...

Ribo-seq
CTG

moderate

3 sORFs_org_Mouse
    Alternative
    Downstream
    Overlapping
    sORF
MEF, NSC, v6-5
559442 33

CTG ...

LRQ ...

Ribo-seq
CTG

weak

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
63042 60

GTG ...

VGC ...

Ribo-seq
GTG

4 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
B_cell, MEF, NSC,
Testis
66863 120

TTG ...

LGS ...

Ribo-seq
TTG

6 sORFs_org_Mouse
    Overlapping
    sORF
    Upstream
B_cell, BMDC, MEF,
Neutrophil, Testis, v6-5
185398 120

GTG ...

VEA ...

Ribo-seq
GTG

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, MEF, v6-5
189943 45

CTG ...

LLP ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
61421 60

TTG ...

LPA ...

Ribo-seq
TTG

moderate

5 sORFs_org_Mouse
    Overlapping
    sORF
    Upstream
B_cell, MEF, Neutrophil,
NSC, Testis
67178 126

GTG ...

VRL ...

Ribo-seq
GTG

6 sORFs_org_Mouse
    Overlapping
    sORF
    Upstream
B_cell, BMDC, MEF,
Neutrophil, Testis, v6-5
172698 33

CTG ...

LGT ...

Ribo-seq
CTG

moderate

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, v6-5
66594 ENSMUST00000198258 Qdpr-209 protein_coding
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

67220 135

CTG ...

LFF ...

Ribo-seq
CTG

16 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
3T3, B_cell, BMDC,
Brain, E14, Liver,
MEF, Neutrophil, R1E,
Spleen_B_cell, Testis, v6-5
185398 120

GTG ...

VEA ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain
175251 105

ATG ...

MAW ...

Ribo-seq
ATG

2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain, Liver
189943 45

CTG ...

LLP ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain
67432 216

ATG ...

MTH ...

Ribo-seq
ATG

2 sORFs_org_Mouse
    CDS
    sORF
3T3, Spleen_B_cell
172698 33

CTG ...

LGT ...

Ribo-seq
CTG

moderate

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, Liver
189569 39

CTG ...

LGP ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain
61421 60

TTG ...

LPA ...

Ribo-seq
TTG

moderate

1 sORFs_org_Mouse
    sORF
    Upstream
Brain
176104 159

GTG ...

VRL ...

Ribo-seq
GTG

2 sORFs_org_Mouse
    sORF
    Upstream
Brain, Spleen_B_cell
180097 45

ATG ...

MTG ...

Ribo-seq
ATG

weak

3 sORFs_org_Mouse
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
Brain, Glioma, Liver,
MEF, MESC
66593 69

GTG ...

VVV ...

Ribo-seq
GTG

14 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
3T3, B_cell, BMDC,
Brain, E14, Liver,
MEF, Neutrophil, R1E,
Spleen_B_cell, Testis, v6-5
190956 126

GTG ...

VRL ...

Ribo-seq
GTG

3 sORFs_org_Mouse
    sORF
    Upstream
Brain, R1E, Spleen_B_cell
67278 96

GTG ...

VEN ...

Ribo-seq
GTG

16 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
3T3, B_cell, BMDC,
Brain, E14, Liver,
MEF, Neutrophil, R1E,
Spleen_B_cell, Testis, v6-5
171144 30

CTG ...

LLP ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain
182229 138

CTG ...

LDH ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    Alternative
    Downstream
    Overlapping
    sORF
Liver
66247 114

CTG ...

LSG ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
Spleen_B_cell
61619 48

ATG ...

MWW ...

Ribo-seq
ATG

weak

1 Johnstone2016
    sORF
    Upstream
Glioma, Liver, MEF,
MESC
189132 120

ATG ...

MAW ...

Ribo-seq
ATG

3 sORFs_org_Mouse
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
Brain, Glioma, Liver,
MEF, MESC
175353 105

GTG ...

VDI ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain
559442 33

CTG ...

LRQ ...

Ribo-seq
CTG

weak

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Liver
524708 144

CTG ...

LSG ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
Spleen_B_cell
186663 63

GTG ...

VAC ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain
66966 99

GTG ...

VVE ...

Ribo-seq
GTG

16 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
3T3, B_cell, BMDC,
Brain, E14, Liver,
MEF, Neutrophil, R1E,
Spleen_B_cell, Testis, v6-5
67298 126

TTG ...

LLQ ...

Ribo-seq
TTG

16 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
3T3, B_cell, BMDC,
Brain, E14, Liver,
MEF, Neutrophil, R1E,
Spleen_B_cell, Testis, v6-5
63042 60

GTG ...

VGC ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
Brain
187037 120

TTG ...

LGS ...

Ribo-seq
TTG

3 sORFs_org_Mouse
    sORF
    Upstream
Brain, R1E, Spleen_B_cell
182506 153

TTG ...

LGS ...

Ribo-seq
TTG

2 sORFs_org_Mouse
    sORF
    Upstream
Brain, Spleen_B_cell
186031 ENSMUST00000197946 Qdpr-208 protein_coding
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

61837 48

CTG ...

LCG ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, R1E
175353 105

GTG ...

VDI ...

Ribo-seq
GTG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, R1E
172698 33

CTG ...

LGT ...

Ribo-seq
CTG

moderate

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, R1E
67386 93

GTG ...

VTR ...

Ribo-seq
GTG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, R1E
175251 105

ATG ...

MAW ...

Ribo-seq
ATG

2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC, Spleen_B_cell
180097 45

ATG ...

MTG ...

Ribo-seq
ATG

weak

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, R1E, Spleen_B_cell
571544 66

GTG ...

VWL ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
R1E
1382817 33

ATG ...

MGR ...

Ribo-seq
ATG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, R1E
61619 48

ATG ...

MWW ...

Ribo-seq
ATG

weak

2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
R1E, Spleen_B_cell
522758 36

CTG ...

LGL ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC, Spleen_B_cell
518539 45

CTG ...

LRT ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Spleen_B_cell
524324 150

ATG ...

MAW ...

Ribo-seq
ATG

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, R1E, Spleen_B_cell
171144 30

CTG ...

LLP ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC, Spleen_B_cell
186030 81

CTG ...

LGL ...

Ribo-seq
CTG

4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, Brain, R1E,
Spleen_B_cell
189569 39

CTG ...

LGP ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
R1E
182229 138

CTG ...

LDH ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    Alternative
    Downstream
    Overlapping
    sORF
R1E
523284 93

GTG ...

VAC ...

Ribo-seq
GTG

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, R1E, Spleen_B_cell
185398 120

GTG ...

VEA ...

Ribo-seq
GTG

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, R1E, Spleen_B_cell
64014 48

GTG ...

VAC ...

Ribo-seq
GTG

2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC, Spleen_B_cell
66930 78

ATG ...

MQF ...

Ribo-seq
ATG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, R1E
61421 60

TTG ...

LPA ...

Ribo-seq
TTG

moderate

3 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC, R1E, Spleen_B_cell
66247 114

CTG ...

LSG ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
BMDC, R1E
63042 60

GTG ...

VGC ...

Ribo-seq
GTG

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, R1E, Spleen_B_cell
522942 75

CTG ...

LLP ...

Ribo-seq
CTG

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, R1E, Spleen_B_cell
66444 ENSMUST00000117425 Qdpr-202 protein_coding
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

571544 66

GTG ...

VWL ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
189569 39

CTG ...

LGP ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3
574754 60

CTG ...

LED ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
61421 60

TTG ...

LPA ...

Ribo-seq
TTG

moderate

2 sORFs_org_Mouse
    Overlapping
    sORF
    Upstream
3T3, Brain
559442 33

CTG ...

LRQ ...

Ribo-seq
CTG

weak

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
175353 105

GTG ...

VDI ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
172698 33

CTG ...

LGT ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
67386 93

GTG ...

VTR ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
66443 75

ATG ...

MSG ...

Ribo-seq
ATG

11 sORFs_org_Mouse
    Overlapping
    sORF
    Upstream
3T3, B_cell, Brain,
Liver, MEF, R1E,
Spleen_B_cell, Testis, v6-5
66930 78

ATG ...

MQF ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
180097 45

ATG ...

MTG ...

Ribo-seq
ATG

weak

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
61619 48

ATG ...

MWW ...

Ribo-seq
ATG

weak

1 sORFs_org_Mouse
    Overlapping
    sORF
    Upstream
3T3
185398 120

GTG ...

VEA ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
63042 60

GTG ...

VGC ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
3T3
66827 ENSMUST00000015950 Qdpr-201 protein_coding
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

902194 57

CTG ...

LPW ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain
985897 69

CTG ...

LGP ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, Liver
66826 174

CTG ...

LSG ...

Ribo-seq
CTG

3 sORFs_org_Mouse
    Overlapping
    sORF
    Upstream
Liver, Testis, v6-5
175251 105

ATG ...

MAW ...

Ribo-seq
ATG

2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain, Liver
559442 33

CTG ...

LRQ ...

Ribo-seq
CTG

weak

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
905752 54

ATT ...

IHS ...

Ribo-seq
ATT

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC
180097 45

ATG ...

MTG ...

Ribo-seq
ATG

weak

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, Liver, MEF
67432 216

ATG ...

MTH ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    CDS
    sORF
Liver
903569 99

ATC ...

IHY ...

Ribo-seq
ATC

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
518539 45

CTG ...

LRT ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Liver
66247 114

CTG ...

LSG ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
E14, Liver
63042 60

GTG ...

VGC ...

Ribo-seq
GTG

4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, Liver, MEF,
v6-5
67386 93

GTG ...

VTR ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
181369 210

CTG ...

LGN ...

Ribo-seq
CTG

4 sORFs_org_Mouse
    Overlapping
    sORF
    Upstream
Brain, Liver, Spleen_B_cell
182506 153

TTG ...

LGS ...

Ribo-seq
TTG

3 sORFs_org_Mouse
    Overlapping
    sORF
    Upstream
BMDC, E14, Liver
185398 120

GTG ...

VEA ...

Ribo-seq
GTG

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, E14, Liver
65625 90

GTG ...

VTR ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
61421 60

TTG ...

LPA ...

Ribo-seq
TTG

moderate

3 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Liver, MEF, v6-5
1237944 99

AGG ...

RRG ...

Ribo-seq
AGG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
189569 39

CTG ...

LGP ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain, Liver
61619 48

ATG ...

MWW ...

Ribo-seq
ATG

weak

4 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain, Liver, MEF,
v6-5
176104 159

GTG ...

VRL ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    Overlapping
    sORF
    Upstream
Liver
1242158 144

AGG ...

RRA ...

Ribo-seq
AGG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
1239544 84

AGG ...

RRA ...

Ribo-seq
AGG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
175353 105

GTG ...

VDI ...

Ribo-seq
GTG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, Liver
182230 ENSMUST00000200259 Qdpr-210 retained_intron
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

902194 57

CTG ...

LPW ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Intronic
    sORF
BMDC
182229 138

CTG ...

LDH ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    Intronic
    sORF
Brain
903569 99

ATC ...

IHY ...

Ribo-seq
ATC

1 sORFs_org_Mouse
    Intronic
    sORF
BMDC
175353 105

GTG ...

VDI ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    Intronic
    sORF
BMDC
180097 45

ATG ...

MTG ...

Ribo-seq
ATG

weak

1 sORFs_org_Mouse
    Intronic
    sORF
BMDC
559804 ENSMUST00000154962 Qdpr-207 protein_coding
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

176104 159

GTG ...

VRL ...

Ribo-seq
GTG

2 sORFs_org_Mouse
    sORF
Liver
518539 45

CTG ...

LRT ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    sORF
Brain, Liver
66247 114

CTG ...

LSG ...

Ribo-seq
CTG

3 sORFs_org_Mouse
    sORF
3T3, Brain, Liver
182506 153

TTG ...

LGS ...

Ribo-seq
TTG

3 sORFs_org_Mouse
    sORF
3T3, Liver
65625 90

GTG ...

VTR ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    sORF
Liver
175353 105

GTG ...

VDI ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    sORF
Liver
185398 120

GTG ...

VEA ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    sORF
Liver
62719 75

ATG ...

MQF ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    sORF
Liver
62956 ENSMUST00000149290 Qdpr-206 processed_transcript
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

189132 120

ATG ...

MAW ...

Ribo-seq
ATG

2 sORFs_org_Mouse
    ncRNA
    sORF
BMDC, Spleen_B_cell
63249 81

CTG ...

LDT ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    ncRNA
    sORF
Testis
63390 93

CTG ...

LKE ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    ncRNA
    sORF
Testis
63026 72

ATG ...

MSL ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    ncRNA
    sORF
Testis
66981 246

CTG ...

LAG ...

Ribo-seq
CTG

8 sORFs_org_Mouse
    ncRNA
    sORF
3T3, BMDC, Brain,
Liver, R1E, Spleen_B_cell,
Testis
64738 69

CTG ...

LAG ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    ncRNA
    sORF
Testis
62955 60

CTG ...

LAG ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    ncRNA
    sORF
Testis
64014 48

GTG ...

VAC ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    ncRNA
    sORF
Testis
64611 75

TTG ...

LTL ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    ncRNA
    sORF
Testis
65506 48

GTG ...

VVT ...

Ribo-seq
GTG

moderate

1 sORFs_org_Mouse
    ncRNA
    sORF
Testis
65056 108

TTG ...

LAT ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    ncRNA
    sORF
Testis
66586 ENSMUST00000120867 Qdpr-204 protein_coding
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

186663 63

GTG ...

VAC ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Liver
189132 120

ATG ...

MAW ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Liver
67027 285

GTG ...

VAV ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    CDS
    sORF
Liver
171144 30

CTG ...

LLP ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Liver
67317 276

CTG ...

LCL ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    CDS
    sORF
Liver
1313627 51

CTG ...

LGL ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Liver
182229 138

CTG ...

LDH ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    Alternative
    Downstream
    Overlapping
    sORF
Liver
67432 216

ATG ...

MTH ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    CDS
    sORF
Liver
67132 270

TTG ...

LSF ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    CDS
    sORF
Liver
559442 33

CTG ...

LRQ ...

Ribo-seq
CTG

weak

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Liver
175353 105

GTG ...

VDI ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Liver
66585 75

CTG ...

LGH ...

Ribo-seq
CTG

9 sORFs_org_Mouse
    Overlapping
    sORF
    Upstream
3T3, B_cell, Brain,
Liver, MEF, Neutrophil,
Testis, v6-5
61421 60

TTG ...

LPA ...

Ribo-seq
TTG

moderate

1 sORFs_org_Mouse
    Overlapping
    sORF
    Upstream
Liver
522758 36

CTG ...

LGL ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Liver
66392 279

GTG ...

VLC ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    CDS
    sORF
Liver
61619 48

ATG ...

MWW ...

Ribo-seq
ATG

weak

1 sORFs_org_Mouse
    Overlapping
    sORF
    Upstream
Liver
185398 120

GTG ...

VEA ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Liver
180097 45

ATG ...

MTG ...

Ribo-seq
ATG

weak

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Liver
175251 105

ATG ...

MAW ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Liver
63042 60

GTG ...

VGC ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
Liver
189943 45

CTG ...

LLP ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Liver
64014 48

GTG ...

VAC ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Liver
176824 ENSMUST00000127562 Qdpr-205 protein_coding
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

63042 60

GTG ...

VGC ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    sORF
Brain
61421 60

TTG ...

LPA ...

Ribo-seq
TTG

moderate

1 sORFs_org_Mouse
    sORF
MEF
518539 45

CTG ...

LRT ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    sORF
Liver
66247 114

CTG ...

LSG ...

Ribo-seq
CTG

3 sORFs_org_Mouse
    sORF
BMDC, Brain, Liver
903363 30

ATT ...

IHS ...

Ribo-seq
ATT

1 sORFs_org_Mouse
    sORF
BMDC
3030740 UNKNOWN_TRANSCRIPT
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

189132 120

ATG ...

MAW ...

Predicted
ATG

1 Samandi2017
    sORF

ORFs

70 ORFs
10 known transcripts
175 ORF to known transcript associations

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF Length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Start codon

The start codon sequence of the ORF.

ORF annotations

A comma-separated list of all the annotations computed by our algorithm for the ORF. This list includes the annotations computed for the ORF for all transcripts. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of all the cell types in which the ORF has already been identified.

Transcripts

Display all the transcripts related to the entry.

65625 90

GTG...

VTR...

GTG InCDS
Overlapping
sORF
Testis, Liver, E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

61422 ENSMUST00000118097 Qdpr-203 protein_coding Ribo-seq
1 sORFs_org_Mouse
559804 ENSMUST00000154962 Qdpr-207 protein_coding Ribo-seq
1 sORFs_org_Mouse
66827 ENSMUST00000015950 Qdpr-201 protein_coding Ribo-seq
1 sORFs_org_Mouse
1382817 33

ATG...

MGR...

ATG Alternative
InCDS
Overlapping
sORF
E14, Brain, R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

61422 ENSMUST00000118097 Qdpr-203 protein_coding Ribo-seq
1 sORFs_org_Mouse
186031 ENSMUST00000197946 Qdpr-208 protein_coding Ribo-seq
2 sORFs_org_Mouse
67220 135

CTG...

LFF...

CTG Alternative
Overlapping
sORF
Upstream
3T3, B_cell, BMDC,
Brain, E14, Liver,
MEF, Neutrophil, R1E,
Spleen_B_cell, Testis, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

66594 ENSMUST00000198258 Qdpr-209 protein_coding Ribo-seq
16 sORFs_org_Mouse
61837 48

CTG...

LCG...

CTG Alternative
InCDS
Overlapping
sORF
Brain, R1E, Testis
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

186031 ENSMUST00000197946 Qdpr-208 protein_coding Ribo-seq
2 sORFs_org_Mouse
61422 ENSMUST00000118097 Qdpr-203 protein_coding Ribo-seq
1 sORFs_org_Mouse
571544 66

GTG...

VWL...

GTG Alternative
InCDS
Overlapping
sORF
3T3, R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

66444 ENSMUST00000117425 Qdpr-202 protein_coding Ribo-seq
1 sORFs_org_Mouse
186031 ENSMUST00000197946 Qdpr-208 protein_coding Ribo-seq
1 sORFs_org_Mouse
902194 57

CTG...

LPW...

CTG Alternative
InCDS
Overlapping
sORF
Intronic
Brain, BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

66827 ENSMUST00000015950 Qdpr-201 protein_coding Ribo-seq
1 sORFs_org_Mouse
182230 ENSMUST00000200259 Qdpr-210 retained_intron Ribo-seq
1 sORFs_org_Mouse
182229 138

CTG...

LDH...

CTG Intronic
sORF
Alternative
Downstream
Overlapping
Brain, Liver, R1E,
MEF, NSC, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

182230 ENSMUST00000200259 Qdpr-210 retained_intron Ribo-seq
moderate 1 sORFs_org_Mouse
66586 ENSMUST00000120867 Qdpr-204 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
66594 ENSMUST00000198258 Qdpr-209 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
186031 ENSMUST00000197946 Qdpr-208 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
61422 ENSMUST00000118097 Qdpr-203 protein_coding Ribo-seq
moderate 3 sORFs_org_Mouse
985897 69

CTG...

LGP...

CTG Alternative
InCDS
Overlapping
sORF
Brain, Liver
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

66827 ENSMUST00000015950 Qdpr-201 protein_coding Ribo-seq
2 sORFs_org_Mouse
175353 105

GTG...

VDI...

GTG Alternative
InCDS
Overlapping
sORF
Intronic
BMDC, R1E, Liver,
3T3, Brain, E14,
MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

186031 ENSMUST00000197946 Qdpr-208 protein_coding Ribo-seq
2 sORFs_org_Mouse
559804 ENSMUST00000154962 Qdpr-207 protein_coding Ribo-seq
1 sORFs_org_Mouse
66444 ENSMUST00000117425 Qdpr-202 protein_coding Ribo-seq
1 sORFs_org_Mouse
66586 ENSMUST00000120867 Qdpr-204 protein_coding Ribo-seq
1 sORFs_org_Mouse
182230 ENSMUST00000200259 Qdpr-210 retained_intron Ribo-seq
1 sORFs_org_Mouse
66594 ENSMUST00000198258 Qdpr-209 protein_coding Ribo-seq
1 sORFs_org_Mouse
61422 ENSMUST00000118097 Qdpr-203 protein_coding Ribo-seq
2 sORFs_org_Mouse
66827 ENSMUST00000015950 Qdpr-201 protein_coding Ribo-seq
2 sORFs_org_Mouse
176104 159

GTG...

VRL...

GTG sORF
Upstream
Overlapping
Liver, Brain, Spleen_B_cell,
B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

559804 ENSMUST00000154962 Qdpr-207 protein_coding Ribo-seq
2 sORFs_org_Mouse
66594 ENSMUST00000198258 Qdpr-209 protein_coding Ribo-seq
2 sORFs_org_Mouse
61422 ENSMUST00000118097 Qdpr-203 protein_coding Ribo-seq
1 sORFs_org_Mouse
66827 ENSMUST00000015950 Qdpr-201 protein_coding Ribo-seq
1 sORFs_org_Mouse
189132 120

ATG...

MAW...

ATG ncRNA
sORF
Alternative
InCDS
Overlapping
BMDC, Spleen_B_cell, Liver,
Brain, Glioma, MEF,
MESC, E14,
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

62956 ENSMUST00000149290 Qdpr-206 processed_transcript Ribo-seq
2 sORFs_org_Mouse
66586 ENSMUST00000120867 Qdpr-204 protein_coding Ribo-seq
1 sORFs_org_Mouse
66594 ENSMUST00000198258 Qdpr-209 protein_coding Ribo-seq
3 sORFs_org_Mouse
Johnstone2016
61422 ENSMUST00000118097 Qdpr-203 protein_coding Ribo-seq
1 sORFs_org_Mouse
3030740 UNKNOWN_TRANSCRIPT Predicted
1 Samandi2017
185398 120

GTG...

VEA...

GTG Alternative
InCDS
Overlapping
sORF
Brain, Liver, E14,
BMDC, R1E, Spleen_B_cell,
MEF, v6-5, 3T3
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

66594 ENSMUST00000198258 Qdpr-209 protein_coding Ribo-seq
1 sORFs_org_Mouse
559804 ENSMUST00000154962 Qdpr-207 protein_coding Ribo-seq
1 sORFs_org_Mouse
66827 ENSMUST00000015950 Qdpr-201 protein_coding Ribo-seq
3 sORFs_org_Mouse
186031 ENSMUST00000197946 Qdpr-208 protein_coding Ribo-seq
3 sORFs_org_Mouse
66586 ENSMUST00000120867 Qdpr-204 protein_coding Ribo-seq
1 sORFs_org_Mouse
61422 ENSMUST00000118097 Qdpr-203 protein_coding Ribo-seq
3 sORFs_org_Mouse
66444 ENSMUST00000117425 Qdpr-202 protein_coding Ribo-seq
1 sORFs_org_Mouse
186663 63

GTG...

VAC...

GTG Alternative
InCDS
Overlapping
sORF
Liver, Brain, E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

66586 ENSMUST00000120867 Qdpr-204 protein_coding Ribo-seq
1 sORFs_org_Mouse
66594 ENSMUST00000198258 Qdpr-209 protein_coding Ribo-seq
1 sORFs_org_Mouse
61422 ENSMUST00000118097 Qdpr-203 protein_coding Ribo-seq
1 sORFs_org_Mouse
63249 81

CTG...

LDT...

CTG ncRNA
sORF
Testis
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

62956 ENSMUST00000149290 Qdpr-206 processed_transcript Ribo-seq
1 sORFs_org_Mouse
189569 39

CTG...

LGP...

CTG InCDS
Overlapping
sORF
3T3, Brain, R1E,
Liver
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

66444 ENSMUST00000117425 Qdpr-202 protein_coding Ribo-seq
1 sORFs_org_Mouse
66594 ENSMUST00000198258 Qdpr-209 protein_coding Ribo-seq
2 sORFs_org_Mouse
186031 ENSMUST00000197946 Qdpr-208 protein_coding Ribo-seq
1 sORFs_org_Mouse
66827 ENSMUST00000015950 Qdpr-201 protein_coding Ribo-seq
2 sORFs_org_Mouse
175251 105

ATG...

MAW...

ATG InCDS
Overlapping
sORF
Brain, Liver, BMDC,
Spleen_B_cell, E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

66594 ENSMUST00000198258 Qdpr-209 protein_coding Ribo-seq
2 sORFs_org_Mouse
186031 ENSMUST00000197946 Qdpr-208 protein_coding Ribo-seq
2 sORFs_org_Mouse
66827 ENSMUST00000015950 Qdpr-201 protein_coding Ribo-seq
2 sORFs_org_Mouse
61422 ENSMUST00000118097 Qdpr-203 protein_coding Ribo-seq
1 sORFs_org_Mouse
66586 ENSMUST00000120867 Qdpr-204 protein_coding Ribo-seq
1 sORFs_org_Mouse
518539 45

CTG...

LRT...

CTG sORF
InCDS
Overlapping
Brain, Liver, Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

559804 ENSMUST00000154962 Qdpr-207 protein_coding Ribo-seq
2 sORFs_org_Mouse
186031 ENSMUST00000197946 Qdpr-208 protein_coding Ribo-seq
1 sORFs_org_Mouse
66827 ENSMUST00000015950 Qdpr-201 protein_coding Ribo-seq
1 sORFs_org_Mouse
176824 ENSMUST00000127562 Qdpr-205 protein_coding Ribo-seq
1 sORFs_org_Mouse
189943 45

CTG...

LLP...

CTG Alternative
InCDS
Overlapping
sORF
Brain, E14, Liver
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

66594 ENSMUST00000198258 Qdpr-209 protein_coding Ribo-seq
1 sORFs_org_Mouse
61422 ENSMUST00000118097 Qdpr-203 protein_coding Ribo-seq
1 sORFs_org_Mouse
66586 ENSMUST00000120867 Qdpr-204 protein_coding Ribo-seq
1 sORFs_org_Mouse
67027 285

GTG...

VAV...

GTG CDS
sORF
E14, Neutrophil, Testis,
Liver
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

61422 ENSMUST00000118097 Qdpr-203 protein_coding Ribo-seq
3 sORFs_org_Mouse
66586 ENSMUST00000120867 Qdpr-204 protein_coding Ribo-seq
1 sORFs_org_Mouse
522758 36

CTG...

LGL...

CTG InCDS
Overlapping
sORF
E14, BMDC, Spleen_B_cell,
Liver
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

61422 ENSMUST00000118097 Qdpr-203 protein_coding Ribo-seq
1 sORFs_org_Mouse
186031 ENSMUST00000197946 Qdpr-208 protein_coding Ribo-seq
2 sORFs_org_Mouse
66586 ENSMUST00000120867 Qdpr-204 protein_coding Ribo-seq
1 sORFs_org_Mouse
171144 30

CTG...

LLP...

CTG InCDS
Overlapping
sORF
Liver, E14, BMDC,
Spleen_B_cell, Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

66586 ENSMUST00000120867 Qdpr-204 protein_coding Ribo-seq
1 sORFs_org_Mouse
61422 ENSMUST00000118097 Qdpr-203 protein_coding Ribo-seq
1 sORFs_org_Mouse
186031 ENSMUST00000197946 Qdpr-208 protein_coding Ribo-seq
2 sORFs_org_Mouse
66594 ENSMUST00000198258 Qdpr-209 protein_coding Ribo-seq
1 sORFs_org_Mouse
67432 216

ATG...

MTH...

ATG CDS
sORF
3T3, Spleen_B_cell, Liver,
BMDC, E14, MEF,
Neutrophil, NSC, Testis,
v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

66594 ENSMUST00000198258 Qdpr-209 protein_coding Ribo-seq
2 sORFs_org_Mouse
66827 ENSMUST00000015950 Qdpr-201 protein_coding Ribo-seq
1 sORFs_org_Mouse
66586 ENSMUST00000120867 Qdpr-204 protein_coding Ribo-seq
1 sORFs_org_Mouse
61422 ENSMUST00000118097 Qdpr-203 protein_coding Ribo-seq
7 sORFs_org_Mouse
172698 33

CTG...

LGT...

CTG Alternative
InCDS
Overlapping
sORF
BMDC, R1E, Brain,
Liver, 3T3, MEF,
v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

186031 ENSMUST00000197946 Qdpr-208 protein_coding Ribo-seq
moderate 2 sORFs_org_Mouse
66594 ENSMUST00000198258 Qdpr-209 protein_coding Ribo-seq
moderate 2 sORFs_org_Mouse
66444 ENSMUST00000117425 Qdpr-202 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
61422 ENSMUST00000118097 Qdpr-203 protein_coding Ribo-seq
moderate 2 sORFs_org_Mouse
66826 174

CTG...

LSG...

CTG Overlapping
sORF
Upstream
Liver, Testis, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

66827 ENSMUST00000015950 Qdpr-201 protein_coding Ribo-seq
3 sORFs_org_Mouse
67386 93

GTG...

VTR...

GTG Alternative
InCDS
Overlapping
sORF
Brain, R1E, MEF,
Testis, E14, 3T3
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

186031 ENSMUST00000197946 Qdpr-208 protein_coding Ribo-seq
2 sORFs_org_Mouse
61422 ENSMUST00000118097 Qdpr-203 protein_coding Ribo-seq
2 sORFs_org_Mouse
66827 ENSMUST00000015950 Qdpr-201 protein_coding Ribo-seq
1 sORFs_org_Mouse
66444 ENSMUST00000117425 Qdpr-202 protein_coding Ribo-seq
1 sORFs_org_Mouse
180097 45

ATG...

MTG...

ATG Alternative
InCDS
Overlapping
sORF
Intronic
MEF, v6-5, BMDC,
R1E, Spleen_B_cell, E14,
Liver, Brain, Glioma,
MESC, 3T3
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

61422 ENSMUST00000118097 Qdpr-203 protein_coding Ribo-seq
weak 2 sORFs_org_Mouse
186031 ENSMUST00000197946 Qdpr-208 protein_coding Ribo-seq
weak 3 sORFs_org_Mouse
66827 ENSMUST00000015950 Qdpr-201 protein_coding Ribo-seq
weak 3 sORFs_org_Mouse
66594 ENSMUST00000198258 Qdpr-209 protein_coding Ribo-seq
weak 3 sORFs_org_Mouse
Johnstone2016
182230 ENSMUST00000200259 Qdpr-210 retained_intron Ribo-seq
weak 1 sORFs_org_Mouse
66444 ENSMUST00000117425 Qdpr-202 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
66586 ENSMUST00000120867 Qdpr-204 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
63042 60

GTG...

VGC...

GTG sORF
Alternative
InCDS
Overlapping
Upstream
Brain, Liver, MEF,
v6-5, B_cell, NSC,
Testis, BMDC, R1E,
Spleen_B_cell, 3T3
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

176824 ENSMUST00000127562 Qdpr-205 protein_coding Ribo-seq
1 sORFs_org_Mouse
66827 ENSMUST00000015950 Qdpr-201 protein_coding Ribo-seq
4 sORFs_org_Mouse
66594 ENSMUST00000198258 Qdpr-209 protein_coding Ribo-seq
1 sORFs_org_Mouse
61422 ENSMUST00000118097 Qdpr-203 protein_coding Ribo-seq
4 sORFs_org_Mouse
186031 ENSMUST00000197946 Qdpr-208 protein_coding Ribo-seq
3 sORFs_org_Mouse
66444 ENSMUST00000117425 Qdpr-202 protein_coding Ribo-seq
1 sORFs_org_Mouse
66586 ENSMUST00000120867 Qdpr-204 protein_coding Ribo-seq
1 sORFs_org_Mouse
559442 33

CTG...

LRQ...

CTG Alternative
InCDS
Overlapping
sORF
E14, 3T3, Liver
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

66827 ENSMUST00000015950 Qdpr-201 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
66444 ENSMUST00000117425 Qdpr-202 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
66586 ENSMUST00000120867 Qdpr-204 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
66594 ENSMUST00000198258 Qdpr-209 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
61422 ENSMUST00000118097 Qdpr-203 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
63390 93

CTG...

LKE...

CTG ncRNA
sORF
Testis
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

62956 ENSMUST00000149290 Qdpr-206 processed_transcript Ribo-seq
1 sORFs_org_Mouse
905752 54

ATT...

IHS...

ATT InCDS
Overlapping
sORF
BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

66827 ENSMUST00000015950 Qdpr-201 protein_coding Ribo-seq
1 sORFs_org_Mouse
574754 60

CTG...

LED...

CTG Alternative
InCDS
Overlapping
sORF
3T3, MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

66444 ENSMUST00000117425 Qdpr-202 protein_coding Ribo-seq
1 sORFs_org_Mouse
61422 ENSMUST00000118097 Qdpr-203 protein_coding Ribo-seq
1 sORFs_org_Mouse
66247 114

CTG...

LSG...

CTG sORF
Alternative
Overlapping
Upstream
3T3, Brain, Liver,
E14, B_cell, Testis,
Spleen_B_cell, BMDC, R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

559804 ENSMUST00000154962 Qdpr-207 protein_coding Ribo-seq
3 sORFs_org_Mouse
66827 ENSMUST00000015950 Qdpr-201 protein_coding Ribo-seq
2 sORFs_org_Mouse
61422 ENSMUST00000118097 Qdpr-203 protein_coding Ribo-seq
2 sORFs_org_Mouse
66594 ENSMUST00000198258 Qdpr-209 protein_coding Ribo-seq
1 sORFs_org_Mouse
186031 ENSMUST00000197946 Qdpr-208 protein_coding Ribo-seq
2 sORFs_org_Mouse
176824 ENSMUST00000127562 Qdpr-205 protein_coding Ribo-seq
3 sORFs_org_Mouse
61421 60

TTG...

LPA...

TTG sORF
Upstream
Overlapping
InCDS
Brain, 3T3, MEF,
Liver, v6-5, BMDC,
R1E, Spleen_B_cell, B_cell,
Neutrophil, NSC, Testis
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

66594 ENSMUST00000198258 Qdpr-209 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
66444 ENSMUST00000117425 Qdpr-202 protein_coding Ribo-seq
moderate 2 sORFs_org_Mouse
176824 ENSMUST00000127562 Qdpr-205 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
66586 ENSMUST00000120867 Qdpr-204 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
66827 ENSMUST00000015950 Qdpr-201 protein_coding Ribo-seq
moderate 3 sORFs_org_Mouse
186031 ENSMUST00000197946 Qdpr-208 protein_coding Ribo-seq
moderate 3 sORFs_org_Mouse
61422 ENSMUST00000118097 Qdpr-203 protein_coding Ribo-seq
moderate 5 sORFs_org_Mouse
182506 153

TTG...

LGS...

TTG sORF
Upstream
Overlapping
3T3, Liver, B_cell,
BMDC, E14, Brain,
Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

559804 ENSMUST00000154962 Qdpr-207 protein_coding Ribo-seq
3 sORFs_org_Mouse
61422 ENSMUST00000118097 Qdpr-203 protein_coding Ribo-seq
1 sORFs_org_Mouse
66827 ENSMUST00000015950 Qdpr-201 protein_coding Ribo-seq
3 sORFs_org_Mouse
66594 ENSMUST00000198258 Qdpr-209 protein_coding Ribo-seq
2 sORFs_org_Mouse
67317 276

CTG...

LCL...

CTG CDS
sORF
Liver, BMDC, E14,
Neutrophil, Testis
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

66586 ENSMUST00000120867 Qdpr-204 protein_coding Ribo-seq
1 sORFs_org_Mouse
61422 ENSMUST00000118097 Qdpr-203 protein_coding Ribo-seq
4 sORFs_org_Mouse
63026 72

ATG...

MSL...

ATG ncRNA
sORF
Testis
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

62956 ENSMUST00000149290 Qdpr-206 processed_transcript Ribo-seq
1 sORFs_org_Mouse
64014 48

GTG...

VAC...

GTG InCDS
Overlapping
sORF
ncRNA
E14, Testis, BMDC,
Spleen_B_cell, Liver
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

61422 ENSMUST00000118097 Qdpr-203 protein_coding Ribo-seq
1 sORFs_org_Mouse
62956 ENSMUST00000149290 Qdpr-206 processed_transcript Ribo-seq
1 sORFs_org_Mouse
186031 ENSMUST00000197946 Qdpr-208 protein_coding Ribo-seq
2 sORFs_org_Mouse
66586 ENSMUST00000120867 Qdpr-204 protein_coding Ribo-seq
1 sORFs_org_Mouse
903569 99

ATC...

IHY...

ATC Alternative
InCDS
Overlapping
sORF
Intronic
E14, BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

66827 ENSMUST00000015950 Qdpr-201 protein_coding Ribo-seq
1 sORFs_org_Mouse
182230 ENSMUST00000200259 Qdpr-210 retained_intron Ribo-seq
1 sORFs_org_Mouse
1313627 51

CTG...

LGL...

CTG Alternative
InCDS
Overlapping
sORF
Liver, E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

66586 ENSMUST00000120867 Qdpr-204 protein_coding Ribo-seq
1 sORFs_org_Mouse
61422 ENSMUST00000118097 Qdpr-203 protein_coding Ribo-seq
1 sORFs_org_Mouse
66981 246

CTG...

LAG...

CTG ncRNA
sORF
3T3, BMDC, Brain,
Liver, R1E, Spleen_B_cell,
Testis
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

62956 ENSMUST00000149290 Qdpr-206 processed_transcript Ribo-seq
8 sORFs_org_Mouse
61619 48

ATG...

MWW...

ATG InCDS
Overlapping
sORF
Upstream
R1E, Spleen_B_cell, B_cell,
E14, MEF, Neutrophil,
NSC, Testis, Glioma,
Liver, MESC, Brain,
v6-5, 3T3
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

186031 ENSMUST00000197946 Qdpr-208 protein_coding Ribo-seq
weak 2 sORFs_org_Mouse
61422 ENSMUST00000118097 Qdpr-203 protein_coding Ribo-seq
weak 6 sORFs_org_Mouse
66594 ENSMUST00000198258 Qdpr-209 protein_coding Ribo-seq
weak 1 Johnstone2016
66586 ENSMUST00000120867 Qdpr-204 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
66827 ENSMUST00000015950 Qdpr-201 protein_coding Ribo-seq
weak 4 sORFs_org_Mouse
66444 ENSMUST00000117425 Qdpr-202 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
64738 69

CTG...

LAG...

CTG ncRNA
sORF
Testis
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

62956 ENSMUST00000149290 Qdpr-206 processed_transcript Ribo-seq
1 sORFs_org_Mouse
62955 60

CTG...

LAG...

CTG ncRNA
sORF
Testis
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

62956 ENSMUST00000149290 Qdpr-206 processed_transcript Ribo-seq
1 sORFs_org_Mouse
66593 69

GTG...

VVV...

GTG Alternative
Overlapping
sORF
Upstream
3T3, B_cell, BMDC,
Brain, E14, Liver,
MEF, Neutrophil, R1E,
Spleen_B_cell, Testis, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

66594 ENSMUST00000198258 Qdpr-209 protein_coding Ribo-seq
14 sORFs_org_Mouse
66930 78

ATG...

MQF...

ATG Alternative
InCDS
Overlapping
sORF
MEF, Testis, Brain,
R1E, 3T3
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

61422 ENSMUST00000118097 Qdpr-203 protein_coding Ribo-seq
2 sORFs_org_Mouse
186031 ENSMUST00000197946 Qdpr-208 protein_coding Ribo-seq
2 sORFs_org_Mouse
66444 ENSMUST00000117425 Qdpr-202 protein_coding Ribo-seq
1 sORFs_org_Mouse
524324 150

ATG...

MAW...

ATG Alternative
InCDS
Overlapping
sORF
BMDC, R1E, Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

186031 ENSMUST00000197946 Qdpr-208 protein_coding Ribo-seq
3 sORFs_org_Mouse
190956 126

GTG...

VRL...

GTG sORF
Upstream
Brain, R1E, Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

66594 ENSMUST00000198258 Qdpr-209 protein_coding Ribo-seq
3 sORFs_org_Mouse
186030 81

CTG...

LGL...

CTG Alternative
InCDS
Overlapping
sORF
BMDC, Brain, R1E,
Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

186031 ENSMUST00000197946 Qdpr-208 protein_coding Ribo-seq
4 sORFs_org_Mouse
67132 270

TTG...

LSF...

TTG CDS
sORF
Liver, BMDC, E14,
Neutrophil, Testis
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

66586 ENSMUST00000120867 Qdpr-204 protein_coding Ribo-seq
1 sORFs_org_Mouse
61422 ENSMUST00000118097 Qdpr-203 protein_coding Ribo-seq
4 sORFs_org_Mouse
181369 210

CTG...

LGN...

CTG Overlapping
sORF
Upstream
Brain, Liver, Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

66827 ENSMUST00000015950 Qdpr-201 protein_coding Ribo-seq
4 sORFs_org_Mouse
67278 96

GTG...

VEN...

GTG Alternative
Overlapping
sORF
Upstream
3T3, B_cell, BMDC,
Brain, E14, Liver,
MEF, Neutrophil, R1E,
Spleen_B_cell, Testis, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

66594 ENSMUST00000198258 Qdpr-209 protein_coding Ribo-seq
16 sORFs_org_Mouse
62719 75

ATG...

MQF...

ATG InCDS
Overlapping
sORF
Testis, Liver
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

61422 ENSMUST00000118097 Qdpr-203 protein_coding Ribo-seq
1 sORFs_org_Mouse
559804 ENSMUST00000154962 Qdpr-207 protein_coding Ribo-seq
1 sORFs_org_Mouse
66585 75

CTG...

LGH...

CTG Overlapping
sORF
Upstream
3T3, B_cell, Brain,
Liver, MEF, Neutrophil,
Testis, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

66586 ENSMUST00000120867 Qdpr-204 protein_coding Ribo-seq
9 sORFs_org_Mouse
523284 93

GTG...

VAC...

GTG Alternative
InCDS
Overlapping
sORF
BMDC, R1E, Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

186031 ENSMUST00000197946 Qdpr-208 protein_coding Ribo-seq
3 sORFs_org_Mouse
64611 75

TTG...

LTL...

TTG ncRNA
sORF
Testis
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

62956 ENSMUST00000149290 Qdpr-206 processed_transcript Ribo-seq
1 sORFs_org_Mouse
524708 144

CTG...

LSG...

CTG Alternative
Overlapping
sORF
Upstream
Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

66594 ENSMUST00000198258 Qdpr-209 protein_coding Ribo-seq
1 sORFs_org_Mouse
66392 279

GTG...

VLC...

GTG CDS
sORF
E14, Neutrophil, Testis,
Liver
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

61422 ENSMUST00000118097 Qdpr-203 protein_coding Ribo-seq
3 sORFs_org_Mouse
66586 ENSMUST00000120867 Qdpr-204 protein_coding Ribo-seq
1 sORFs_org_Mouse
66966 99

GTG...

VVE...

GTG Alternative
Overlapping
sORF
Upstream
3T3, B_cell, BMDC,
Brain, E14, Liver,
MEF, Neutrophil, R1E,
Spleen_B_cell, Testis, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

66594 ENSMUST00000198258 Qdpr-209 protein_coding Ribo-seq
16 sORFs_org_Mouse
66443 75

ATG...

MSG...

ATG Overlapping
sORF
Upstream
3T3, B_cell, Brain,
Liver, MEF, R1E,
Spleen_B_cell, Testis, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

66444 ENSMUST00000117425 Qdpr-202 protein_coding Ribo-seq
11 sORFs_org_Mouse
67298 126

TTG...

LLQ...

TTG Alternative
Overlapping
sORF
Upstream
3T3, B_cell, BMDC,
Brain, E14, Liver,
MEF, Neutrophil, R1E,
Spleen_B_cell, Testis, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

66594 ENSMUST00000198258 Qdpr-209 protein_coding Ribo-seq
16 sORFs_org_Mouse
1237944 99

AGG...

RRG...

AGG InCDS
Overlapping
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

66827 ENSMUST00000015950 Qdpr-201 protein_coding Ribo-seq
1 sORFs_org_Mouse
66863 120

TTG...

LGS...

TTG Overlapping
sORF
Upstream
B_cell, BMDC, MEF,
Neutrophil, Testis, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

61422 ENSMUST00000118097 Qdpr-203 protein_coding Ribo-seq
6 sORFs_org_Mouse
65506 48

GTG...

VVT...

GTG ncRNA
sORF
Testis
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

62956 ENSMUST00000149290 Qdpr-206 processed_transcript Ribo-seq
moderate 1 sORFs_org_Mouse
522942 75

CTG...

LLP...

CTG Alternative
InCDS
Overlapping
sORF
BMDC, R1E, Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

186031 ENSMUST00000197946 Qdpr-208 protein_coding Ribo-seq
3 sORFs_org_Mouse
67178 126

GTG...

VRL...

GTG Overlapping
sORF
Upstream
B_cell, BMDC, MEF,
Neutrophil, Testis, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

61422 ENSMUST00000118097 Qdpr-203 protein_coding Ribo-seq
6 sORFs_org_Mouse
1242158 144

AGG...

RRA...

AGG InCDS
Overlapping
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

66827 ENSMUST00000015950 Qdpr-201 protein_coding Ribo-seq
1 sORFs_org_Mouse
65056 108

TTG...

LAT...

TTG ncRNA
sORF
Testis
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

62956 ENSMUST00000149290 Qdpr-206 processed_transcript Ribo-seq
1 sORFs_org_Mouse
187037 120

TTG...

LGS...

TTG sORF
Upstream
Brain, R1E, Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

66594 ENSMUST00000198258 Qdpr-209 protein_coding Ribo-seq
3 sORFs_org_Mouse
1239544 84

AGG...

RRA...

AGG Alternative
InCDS
Overlapping
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

66827 ENSMUST00000015950 Qdpr-201 protein_coding Ribo-seq
1 sORFs_org_Mouse
903363 30

ATT...

IHS...

ATT sORF
BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

176824 ENSMUST00000127562 Qdpr-205 protein_coding Ribo-seq
1 sORFs_org_Mouse

Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5