Metam
ORF

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Gene

Gene

ID CARD

ID

NCBI:105171

Aliases

AI450344
Arrdc3, ENSMUSG00000074794, MGI:2145242
mKIAA1376, NCBI:105171, OFF:Arrdc3

Chromosome

13

Transcripts

51 ORFs
6 known transcripts
96 ORF to known transcript associations

MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

ORFs

Display all the transcripts related to the entry.

669097 ENSMUST00000159090 Arrdc3-202 retained_intron
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

338824 102

TTG ...

LHR ...

Ribo-seq
TTG

moderate

4 sORFs_org_Mouse
    Intronic
    sORF
3T3, E14, R1E,
v6-5
335971 57

GTG ...

VDG ...

Ribo-seq
GTG

strong

4 sORFs_org_Mouse
    Intronic
    sORF
3T3, E14, NSC,
R1E
333307 78

ATG ...

MRK ...

Ribo-seq
ATG

moderate

3 sORFs_org_Mouse
    Intronic
    sORF
3T3, Liver, R1E
26850 48

TTG ...

LLP ...

Ribo-seq
TTG

weak

2 sORFs_org_Mouse
    Intronic
    sORF
3T3, Liver
337374 45

TTG ...

LAS ...

Ribo-seq
TTG

strong

4 sORFs_org_Mouse
    Intronic
    sORF
E14, NSC, R1E,
v6-5
669096 30

TTG ...

LHG ...

Ribo-seq
TTG

weak

1 sORFs_org_Mouse
    Intronic
    sORF
3T3
337597 114

GTG ...

VKA ...

Ribo-seq
GTG

weak

4 sORFs_org_Mouse
    Intronic
    sORF
3T3, E14, R1E,
v6-5
333261 33

CTG ...

LPI ...

Ribo-seq
CTG

moderate

3 sORFs_org_Mouse
    Intronic
    sORF
3T3, Liver, R1E
332698 99

ATG ...

MII ...

Ribo-seq
ATG

moderate

1 sORFs_org_Mouse
    Intronic
    sORF
3T3
339170 126

GTG ...

VRY ...

Ribo-seq
GTG

moderate

3 sORFs_org_Mouse
    Intronic
    sORF
3T3, E14, R1E
671420 48

ATG ...

MIF ...

Ribo-seq
ATG

weak

1 sORFs_org_Mouse
    Intronic
    sORF
3T3
673255 ENSMUST00000099356 Arrdc3-201 protein_coding
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

28272 123

CTG ...

LKK ...

Ribo-seq
CTG

4 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, Liver, v6-5
28126 87

ATG ...

MNM ...

Ribo-seq
ATG

4 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, Liver, v6-5
333307 78

ATG ...

MRK ...

Ribo-seq
ATG

moderate

1 Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
Glioma, Liver, MEF,
MESC
671420 48

ATG ...

MIF ...

Ribo-seq
ATG

weak

1 Johnstone2016
    Alternative
    sORF
    Upstream
Glioma, Liver, MEF,
MESC
1346716 39

CTG ...

LHL ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain
1347943 45

CTG ...

LVL ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain
28006 81

ATG ...

MHL ...

Ribo-seq
ATG

4 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, Liver, v6-5
1138076 159

GTG ...

VMI ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    Alternative
    Downstream
    Overlapping
    sORF
v6-5
28161 132

ATG ...

MII ...

Ribo-seq
ATG

4 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, Liver, v6-5
28169 135

ATG ...

MMI ...

Ribo-seq
ATG

5 sORFs_org_Mouse
Johnstone2016
    InCDS
    Overlapping
    sORF
3T3, Glioma, Liver,
MEF, MESC, v6-5
334999 51

CTG ...

LLL ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain
1302779 84

ACG ...

TSR ...

Ribo-seq
ACG

moderate

1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
E14
1138267 150

TTG ...

LRE ...

Ribo-seq
TTG

2 sORFs_org_Mouse
    Alternative
    Downstream
    Overlapping
    sORF
Liver, v6-5
1137997 156

ATG ...

MIL ...

Ribo-seq
ATG

2 sORFs_org_Mouse
Johnstone2016
    Alternative
    Downstream
    Overlapping
    sORF
Glioma, Liver, MEF,
MESC, v6-5
1347646 48

TTG ...

LLV ...

Ribo-seq
TTG

weak

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain
1138138 165

GTG ...

VLV ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    Alternative
    Downstream
    Overlapping
    sORF
v6-5
1535448 36

TTG ...

LPR ...

Ribo-seq
TTG

weak

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain
26851 ENSMUST00000161441 Arrdc3-205 protein_coding
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

28272 123

CTG ...

LKK ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
Brain, Testis
334999 51

CTG ...

LLL ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    sORF
    Upstream
Brain
1305835 180

ATC ...

ISP ...

Ribo-seq
ATC

1 sORFs_org_Mouse
    Alternative
    Downstream
    Overlapping
    sORF
E14
337597 114

GTG ...

VKA ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    sORF
    Upstream
Brain
26850 48

TTG ...

LLP ...

Ribo-seq
TTG

weak

1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
Testis
1137997 156

ATG ...

MIL ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    Alternative
    Downstream
    Overlapping
    sORF
E14
332698 99

ATG ...

MII ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
Brain
339170 126

GTG ...

VRY ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    sORF
    Upstream
Brain
28126 87

ATG ...

MNM ...

Ribo-seq
ATG

2 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
Brain, Testis
28169 135

ATG ...

MMI ...

Ribo-seq
ATG

2 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
Brain, Testis
1305113 135

AAG ...

KDH ...

Ribo-seq
AAG

1 sORFs_org_Mouse
    Alternative
    Downstream
    Overlapping
    sORF
E14
1305433 117

ATA ...

ISR ...

Ribo-seq
ATA

1 sORFs_org_Mouse
    Alternative
    Downstream
    Overlapping
    sORF
E14
28161 132

ATG ...

MII ...

Ribo-seq
ATG

2 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
Brain, Testis
1305186 123

TTG ...

LLI ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    Alternative
    Downstream
    Overlapping
    sORF
E14
337374 45

TTG ...

LAS ...

Ribo-seq
TTG

strong

1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
Brain
339263 57

GTG ...

VEW ...

Ribo-seq
GTG

strong

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain
28006 81

ATG ...

MHL ...

Ribo-seq
ATG

2 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
Brain, Testis
338824 102

TTG ...

LHR ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    sORF
    Upstream
Brain
1848831 ENSMUST00000159856 Arrdc3-204 retained_intron
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

27803 237

GTG ...

VPK ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    Intronic
    sORF
R1E
27855 105

CTG ...

LLK ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Intronic
    sORF
R1E
339676 186

GTG ...

VYV ...

Ribo-seq
GTG

moderate

1 sORFs_org_Mouse
    Intronic
    sORF
R1E
26559 165

GTG ...

VAN ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    Intronic
    sORF
R1E
339009 156

TTG ...

LLL ...

Ribo-seq
TTG

moderate

1 sORFs_org_Mouse
    Intronic
    sORF
R1E
338012 180

GTG ...

VDI ...

Ribo-seq
GTG

moderate

1 sORFs_org_Mouse
    Intronic
    sORF
R1E
337983 144

TTG ...

LPL ...

Ribo-seq
TTG

moderate

1 sORFs_org_Mouse
    Intronic
    sORF
R1E
26560 ENSMUST00000162904 Arrdc3-206 retained_intron
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

339009 156

TTG ...

LLL ...

Ribo-seq
TTG

2 sORFs_org_Mouse
    Intronic
    sORF
Brain, E14
338012 180

GTG ...

VDI ...

Ribo-seq
GTG

2 sORFs_org_Mouse
    Intronic
    sORF
Brain, E14
26559 165

GTG ...

VAN ...

Ribo-seq
GTG

3 sORFs_org_Mouse
    Intronic
    sORF
E14, Testis, v6-5
335355 117

CTG ...

LHP ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    Intronic
    sORF
Brain, E14
27803 237

GTG ...

VPK ...

Ribo-seq
GTG

3 sORFs_org_Mouse
    Intronic
    sORF
E14, Testis, v6-5
1346599 87

GTG ...

VSS ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    Intronic
    sORF
E14
27855 105

CTG ...

LLK ...

Ribo-seq
CTG

3 sORFs_org_Mouse
    Intronic
    sORF
Brain, Testis, v6-5
339676 186

GTG ...

VYV ...

Ribo-seq
GTG

2 sORFs_org_Mouse
    Intronic
    sORF
Brain, E14
337983 144

TTG ...

LPL ...

Ribo-seq
TTG

2 sORFs_org_Mouse
    Intronic
    sORF
Brain, E14
333262 ENSMUST00000159690 Arrdc3-203 nonsense_mediated_decay
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

338012 180

GTG ...

VDI ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
Liver
1401208 54

TTG ...

LLI ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    Alternative
    Downstream
    NMD
    sORF
Liver
1135171 96

GTG ...

VLV ...

Ribo-seq
GTG

2 sORFs_org_Mouse
    Alternative
    Downstream
    NMD
    sORF
Liver, v6-5
333307 78

ATG ...

MRK ...

Ribo-seq
ATG

moderate

2 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
Brain, Liver
335971 57

GTG ...

VDG ...

Ribo-seq
GTG

strong

2 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
Brain, Liver
1136502 87

ATG ...

MIL ...

Ribo-seq
ATG

2 sORFs_org_Mouse
    Alternative
    Downstream
    NMD
    sORF
Liver, v6-5
1347943 45

CTG ...

LVL ...

Ribo-seq
CTG

moderate

2 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
E14, Liver
1136064 30

GTG ...

VKI ...

Ribo-seq
GTG

weak

2 sORFs_org_Mouse
    Alternative
    NMD
    sORF
    Upstream
Liver, v6-5
1402371 195

CTG ...

LLF ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    InCDS
    NMD
    Overlapping
    sORF
Liver
669235 60

CTG ...

LIS ...

Ribo-seq
CTG

moderate

4 sORFs_org_Mouse
    Alternative
    Downstream
    NMD
    sORF
3T3, Liver, NSC,
v6-5
339263 57

GTG ...

VEW ...

Ribo-seq
GTG

strong

1 sORFs_org_Mouse
    InCDS
    NMD
    Overlapping
    sORF
Liver
1401545 159

GTG ...

VGA ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    Alternative
    Downstream
    NMD
    sORF
Liver
26559 165

GTG ...

VAN ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
Liver
27855 105

CTG ...

LLK ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
Liver
27803 237

GTG ...

VPK ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
Liver
335355 117

CTG ...

LHP ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
Liver
339170 126

GTG ...

VRY ...

Ribo-seq
GTG

2 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
Liver, v6-5
334999 51

CTG ...

LLL ...

Ribo-seq
CTG

moderate

2 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
E14, Liver
1137263 90

GTG ...

VMI ...

Ribo-seq
GTG

2 sORFs_org_Mouse
    Alternative
    Downstream
    NMD
    sORF
Liver, v6-5
339676 186

GTG ...

VYV ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
Liver
337597 114

GTG ...

VKA ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
Liver
339009 156

TTG ...

LLL ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
Liver
1347646 48

TTG ...

LLV ...

Ribo-seq
TTG

weak

2 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
E14, Liver
671420 48

ATG ...

MIF ...

Ribo-seq
ATG

weak

1 sORFs_org_Mouse
    Alternative
    NMD
    sORF
    Upstream
v6-5
1401820 78

CTG ...

LGR ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
Liver
333261 33

CTG ...

LPI ...

Ribo-seq
CTG

moderate

2 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
Brain, Liver
337374 45

TTG ...

LAS ...

Ribo-seq
TTG

strong

1 sORFs_org_Mouse
    InCDS
    NMD
    Overlapping
    sORF
Liver
847884 72

TTG ...

LIQ ...

Ribo-seq
TTG

moderate

3 sORFs_org_Mouse
    Alternative
    Downstream
    NMD
    sORF
Liver, NSC, v6-5
338824 102

TTG ...

LHR ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
Liver
337983 144

TTG ...

LPL ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
Liver
26850 48

TTG ...

LLP ...

Ribo-seq
TTG

weak

2 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
Liver, v6-5
1402408 81

TTG ...

LRE ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    Alternative
    Downstream
    NMD
    sORF
Liver
1346599 87

GTG ...

VSS ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
Liver
1346716 39

CTG ...

LHL ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
E14
3113345 UNKNOWN_TRANSCRIPT
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

28169 135

ATG ...

MMI ...

Predicted
ATG

1 Samandi2017
    sORF
1137997 156

ATG ...

MIL ...

Predicted
ATG

1 Samandi2017
    sORF

ORFs

51 ORFs
6 known transcripts
96 ORF to known transcript associations

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF Length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Start codon

The start codon sequence of the ORF.

ORF annotations

A comma-separated list of all the annotations computed by our algorithm for the ORF. This list includes the annotations computed for the ORF for all transcripts. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of all the cell types in which the ORF has already been identified.

Transcripts

Display all the transcripts related to the entry.

338824 102

TTG...

LHR...

TTG Intronic
sORF
Alternative
InCDS
NMD
Overlapping
Upstream
3T3, E14, R1E,
v6-5, Liver, Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

669097 ENSMUST00000159090 Arrdc3-202 retained_intron Ribo-seq
moderate 4 sORFs_org_Mouse
333262 ENSMUST00000159690 Arrdc3-203 nonsense_mediated_decay Ribo-seq
1 sORFs_org_Mouse
26851 ENSMUST00000161441 Arrdc3-205 protein_coding Ribo-seq
1 sORFs_org_Mouse
28272 123

CTG...

LKK...

CTG InCDS
Overlapping
sORF
Alternative
Upstream
3T3, Liver, v6-5,
Brain, Testis
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

673255 ENSMUST00000099356 Arrdc3-201 protein_coding Ribo-seq
4 sORFs_org_Mouse
26851 ENSMUST00000161441 Arrdc3-205 protein_coding Ribo-seq
2 sORFs_org_Mouse
335971 57

GTG...

VDG...

GTG Intronic
sORF
Alternative
InCDS
NMD
Overlapping
3T3, E14, NSC,
R1E, Brain, Liver
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

669097 ENSMUST00000159090 Arrdc3-202 retained_intron Ribo-seq
strong 4 sORFs_org_Mouse
333262 ENSMUST00000159690 Arrdc3-203 nonsense_mediated_decay Ribo-seq
strong 2 sORFs_org_Mouse
27803 237

GTG...

VPK...

GTG Intronic
sORF
Alternative
InCDS
NMD
Overlapping
R1E, Liver, E14,
Testis, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1848831 ENSMUST00000159856 Arrdc3-204 retained_intron Ribo-seq
1 sORFs_org_Mouse
333262 ENSMUST00000159690 Arrdc3-203 nonsense_mediated_decay Ribo-seq
1 sORFs_org_Mouse
26560 ENSMUST00000162904 Arrdc3-206 retained_intron Ribo-seq
3 sORFs_org_Mouse
28126 87

ATG...

MNM...

ATG InCDS
Overlapping
sORF
Alternative
Upstream
3T3, Liver, v6-5,
Brain, Testis
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

673255 ENSMUST00000099356 Arrdc3-201 protein_coding Ribo-seq
4 sORFs_org_Mouse
26851 ENSMUST00000161441 Arrdc3-205 protein_coding Ribo-seq
2 sORFs_org_Mouse
339009 156

TTG...

LLL...

TTG Intronic
sORF
Alternative
InCDS
NMD
Overlapping
Brain, E14, R1E,
Liver
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

26560 ENSMUST00000162904 Arrdc3-206 retained_intron Ribo-seq
2 sORFs_org_Mouse
1848831 ENSMUST00000159856 Arrdc3-204 retained_intron Ribo-seq
moderate 1 sORFs_org_Mouse
333262 ENSMUST00000159690 Arrdc3-203 nonsense_mediated_decay Ribo-seq
1 sORFs_org_Mouse
334999 51

CTG...

LLL...

CTG sORF
Upstream
Alternative
InCDS
NMD
Overlapping
Brain, E14, Liver
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

26851 ENSMUST00000161441 Arrdc3-205 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
333262 ENSMUST00000159690 Arrdc3-203 nonsense_mediated_decay Ribo-seq
moderate 2 sORFs_org_Mouse
673255 ENSMUST00000099356 Arrdc3-201 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
1305835 180

ATC...

ISP...

ATC Alternative
Downstream
Overlapping
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

26851 ENSMUST00000161441 Arrdc3-205 protein_coding Ribo-seq
1 sORFs_org_Mouse
338012 180

GTG...

VDI...

GTG Alternative
InCDS
NMD
Overlapping
sORF
Intronic
Liver, Brain, E14,
R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

333262 ENSMUST00000159690 Arrdc3-203 nonsense_mediated_decay Ribo-seq
1 sORFs_org_Mouse
26560 ENSMUST00000162904 Arrdc3-206 retained_intron Ribo-seq
2 sORFs_org_Mouse
1848831 ENSMUST00000159856 Arrdc3-204 retained_intron Ribo-seq
moderate 1 sORFs_org_Mouse
337597 114

GTG...

VKA...

GTG sORF
Upstream
Intronic
Alternative
InCDS
NMD
Overlapping
Brain, 3T3, E14,
R1E, v6-5, Liver
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

26851 ENSMUST00000161441 Arrdc3-205 protein_coding Ribo-seq
1 sORFs_org_Mouse
669097 ENSMUST00000159090 Arrdc3-202 retained_intron Ribo-seq
weak 4 sORFs_org_Mouse
333262 ENSMUST00000159690 Arrdc3-203 nonsense_mediated_decay Ribo-seq
1 sORFs_org_Mouse
1401208 54

TTG...

LLI...

TTG Alternative
Downstream
NMD
sORF
Liver
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

333262 ENSMUST00000159690 Arrdc3-203 nonsense_mediated_decay Ribo-seq
1 sORFs_org_Mouse
333307 78

ATG...

MRK...

ATG Alternative
InCDS
Overlapping
sORF
NMD
Intronic
Glioma, Liver, MEF,
MESC, Brain, 3T3,
R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

673255 ENSMUST00000099356 Arrdc3-201 protein_coding Ribo-seq
moderate 1 Johnstone2016
333262 ENSMUST00000159690 Arrdc3-203 nonsense_mediated_decay Ribo-seq
moderate 2 sORFs_org_Mouse
669097 ENSMUST00000159090 Arrdc3-202 retained_intron Ribo-seq
moderate 3 sORFs_org_Mouse
27855 105

CTG...

LLK...

CTG Intronic
sORF
Alternative
InCDS
NMD
Overlapping
R1E, Liver, Brain,
Testis, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1848831 ENSMUST00000159856 Arrdc3-204 retained_intron Ribo-seq
1 sORFs_org_Mouse
333262 ENSMUST00000159690 Arrdc3-203 nonsense_mediated_decay Ribo-seq
1 sORFs_org_Mouse
26560 ENSMUST00000162904 Arrdc3-206 retained_intron Ribo-seq
3 sORFs_org_Mouse
26850 48

TTG...

LLP...

TTG Alternative
sORF
Upstream
Intronic
InCDS
NMD
Overlapping
Testis, 3T3, Liver,
v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

26851 ENSMUST00000161441 Arrdc3-205 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
669097 ENSMUST00000159090 Arrdc3-202 retained_intron Ribo-seq
weak 2 sORFs_org_Mouse
333262 ENSMUST00000159690 Arrdc3-203 nonsense_mediated_decay Ribo-seq
weak 2 sORFs_org_Mouse
1135171 96

GTG...

VLV...

GTG Alternative
Downstream
NMD
sORF
Liver, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

333262 ENSMUST00000159690 Arrdc3-203 nonsense_mediated_decay Ribo-seq
2 sORFs_org_Mouse
339676 186

GTG...

VYV...

GTG Intronic
sORF
Alternative
InCDS
NMD
Overlapping
R1E, Liver, Brain,
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1848831 ENSMUST00000159856 Arrdc3-204 retained_intron Ribo-seq
moderate 1 sORFs_org_Mouse
333262 ENSMUST00000159690 Arrdc3-203 nonsense_mediated_decay Ribo-seq
1 sORFs_org_Mouse
26560 ENSMUST00000162904 Arrdc3-206 retained_intron Ribo-seq
2 sORFs_org_Mouse
1137997 156

ATG...

MIL...

ATG Alternative
Downstream
Overlapping
sORF
E14, Glioma,
Liver, MEF, MESC,
v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

26851 ENSMUST00000161441 Arrdc3-205 protein_coding Ribo-seq
1 sORFs_org_Mouse
3113345 UNKNOWN_TRANSCRIPT Predicted
1 Samandi2017
673255 ENSMUST00000099356 Arrdc3-201 protein_coding Ribo-seq
2 sORFs_org_Mouse
Johnstone2016
1136502 87

ATG...

MIL...

ATG Alternative
Downstream
NMD
sORF
Liver, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

333262 ENSMUST00000159690 Arrdc3-203 nonsense_mediated_decay Ribo-seq
2 sORFs_org_Mouse
1347943 45

CTG...

LVL...

CTG Alternative
InCDS
NMD
Overlapping
sORF
E14, Liver, Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

333262 ENSMUST00000159690 Arrdc3-203 nonsense_mediated_decay Ribo-seq
moderate 2 sORFs_org_Mouse
673255 ENSMUST00000099356 Arrdc3-201 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
671420 48

ATG...

MIF...

ATG Alternative
sORF
Upstream
NMD
Intronic
Glioma, Liver, MEF,
MESC, v6-5, 3T3
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

673255 ENSMUST00000099356 Arrdc3-201 protein_coding Ribo-seq
weak 1 Johnstone2016
333262 ENSMUST00000159690 Arrdc3-203 nonsense_mediated_decay Ribo-seq
weak 1 sORFs_org_Mouse
669097 ENSMUST00000159090 Arrdc3-202 retained_intron Ribo-seq
weak 1 sORFs_org_Mouse
1136064 30

GTG...

VKI...

GTG Alternative
NMD
sORF
Upstream
Liver, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

333262 ENSMUST00000159690 Arrdc3-203 nonsense_mediated_decay Ribo-seq
weak 2 sORFs_org_Mouse
1402371 195

CTG...

LLF...

CTG InCDS
NMD
Overlapping
sORF
Liver
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

333262 ENSMUST00000159690 Arrdc3-203 nonsense_mediated_decay Ribo-seq
moderate 1 sORFs_org_Mouse
26559 165

GTG...

VAN...

GTG Intronic
sORF
Alternative
InCDS
NMD
Overlapping
E14, Testis, v6-5,
Liver, R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

26560 ENSMUST00000162904 Arrdc3-206 retained_intron Ribo-seq
3 sORFs_org_Mouse
333262 ENSMUST00000159690 Arrdc3-203 nonsense_mediated_decay Ribo-seq
1 sORFs_org_Mouse
1848831 ENSMUST00000159856 Arrdc3-204 retained_intron Ribo-seq
1 sORFs_org_Mouse
332698 99

ATG...

MII...

ATG Alternative
sORF
Upstream
Intronic
Brain, 3T3
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

26851 ENSMUST00000161441 Arrdc3-205 protein_coding Ribo-seq
1 sORFs_org_Mouse
669097 ENSMUST00000159090 Arrdc3-202 retained_intron Ribo-seq
moderate 1 sORFs_org_Mouse
28169 135

ATG...

MMI...

ATG sORF
Alternative
Upstream
InCDS
Overlapping
Brain, Testis,
3T3, Glioma, Liver,
MEF, MESC, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

3113345 UNKNOWN_TRANSCRIPT Predicted
1 Samandi2017
26851 ENSMUST00000161441 Arrdc3-205 protein_coding Ribo-seq
2 sORFs_org_Mouse
673255 ENSMUST00000099356 Arrdc3-201 protein_coding Ribo-seq
5 sORFs_org_Mouse
Johnstone2016
669235 60

CTG...

LIS...

CTG Alternative
Downstream
NMD
sORF
3T3, Liver, NSC,
v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

333262 ENSMUST00000159690 Arrdc3-203 nonsense_mediated_decay Ribo-seq
moderate 4 sORFs_org_Mouse
1346716 39

CTG...

LHL...

CTG Alternative
InCDS
Overlapping
sORF
NMD
Brain, E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

673255 ENSMUST00000099356 Arrdc3-201 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
333262 ENSMUST00000159690 Arrdc3-203 nonsense_mediated_decay Ribo-seq
moderate 1 sORFs_org_Mouse
339170 126

GTG...

VRY...

GTG sORF
Upstream
Alternative
InCDS
NMD
Overlapping
Intronic
Brain, Liver, v6-5,
3T3, E14, R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

26851 ENSMUST00000161441 Arrdc3-205 protein_coding Ribo-seq
1 sORFs_org_Mouse
333262 ENSMUST00000159690 Arrdc3-203 nonsense_mediated_decay Ribo-seq
2 sORFs_org_Mouse
669097 ENSMUST00000159090 Arrdc3-202 retained_intron Ribo-seq
moderate 3 sORFs_org_Mouse
339263 57

GTG...

VEW...

GTG InCDS
NMD
Overlapping
sORF
Alternative
Liver, Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

333262 ENSMUST00000159690 Arrdc3-203 nonsense_mediated_decay Ribo-seq
strong 1 sORFs_org_Mouse
26851 ENSMUST00000161441 Arrdc3-205 protein_coding Ribo-seq
strong 1 sORFs_org_Mouse
337374 45

TTG...

LAS...

TTG Intronic
sORF
Alternative
Upstream
InCDS
NMD
Overlapping
E14, NSC, R1E,
v6-5, Brain, Liver
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

669097 ENSMUST00000159090 Arrdc3-202 retained_intron Ribo-seq
strong 4 sORFs_org_Mouse
26851 ENSMUST00000161441 Arrdc3-205 protein_coding Ribo-seq
strong 1 sORFs_org_Mouse
333262 ENSMUST00000159690 Arrdc3-203 nonsense_mediated_decay Ribo-seq
strong 1 sORFs_org_Mouse
1401545 159

GTG...

VGA...

GTG Alternative
Downstream
NMD
sORF
Liver
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

333262 ENSMUST00000159690 Arrdc3-203 nonsense_mediated_decay Ribo-seq
1 sORFs_org_Mouse
1305113 135

AAG...

KDH...

AAG Alternative
Downstream
Overlapping
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

26851 ENSMUST00000161441 Arrdc3-205 protein_coding Ribo-seq
1 sORFs_org_Mouse
28006 81

ATG...

MHL...

ATG InCDS
Overlapping
sORF
Alternative
Upstream
3T3, Liver, v6-5,
Brain, Testis
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

673255 ENSMUST00000099356 Arrdc3-201 protein_coding Ribo-seq
4 sORFs_org_Mouse
26851 ENSMUST00000161441 Arrdc3-205 protein_coding Ribo-seq
2 sORFs_org_Mouse
1138076 159

GTG...

VMI...

GTG Alternative
Downstream
Overlapping
sORF
v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

673255 ENSMUST00000099356 Arrdc3-201 protein_coding Ribo-seq
1 sORFs_org_Mouse
669096 30

TTG...

LHG...

TTG Intronic
sORF
3T3
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

669097 ENSMUST00000159090 Arrdc3-202 retained_intron Ribo-seq
weak 1 sORFs_org_Mouse
335355 117

CTG...

LHP...

CTG Alternative
InCDS
NMD
Overlapping
sORF
Intronic
Liver, Brain, E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

333262 ENSMUST00000159690 Arrdc3-203 nonsense_mediated_decay Ribo-seq
1 sORFs_org_Mouse
26560 ENSMUST00000162904 Arrdc3-206 retained_intron Ribo-seq
2 sORFs_org_Mouse
333261 33

CTG...

LPI...

CTG Intronic
sORF
Alternative
InCDS
NMD
Overlapping
3T3, Liver, R1E,
Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

669097 ENSMUST00000159090 Arrdc3-202 retained_intron Ribo-seq
moderate 3 sORFs_org_Mouse
333262 ENSMUST00000159690 Arrdc3-203 nonsense_mediated_decay Ribo-seq
moderate 2 sORFs_org_Mouse
28161 132

ATG...

MII...

ATG InCDS
Overlapping
sORF
Alternative
Upstream
3T3, Liver, v6-5,
Brain, Testis
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

673255 ENSMUST00000099356 Arrdc3-201 protein_coding Ribo-seq
4 sORFs_org_Mouse
26851 ENSMUST00000161441 Arrdc3-205 protein_coding Ribo-seq
2 sORFs_org_Mouse
1137263 90

GTG...

VMI...

GTG Alternative
Downstream
NMD
sORF
Liver, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

333262 ENSMUST00000159690 Arrdc3-203 nonsense_mediated_decay Ribo-seq
2 sORFs_org_Mouse
1305433 117

ATA...

ISR...

ATA Alternative
Downstream
Overlapping
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

26851 ENSMUST00000161441 Arrdc3-205 protein_coding Ribo-seq
1 sORFs_org_Mouse
1302779 84

ACG...

TSR...

ACG Alternative
sORF
Upstream
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

673255 ENSMUST00000099356 Arrdc3-201 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
1346599 87

GTG...

VSS...

GTG Intronic
sORF
Alternative
InCDS
NMD
Overlapping
E14, Liver
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

26560 ENSMUST00000162904 Arrdc3-206 retained_intron Ribo-seq
1 sORFs_org_Mouse
333262 ENSMUST00000159690 Arrdc3-203 nonsense_mediated_decay Ribo-seq
1 sORFs_org_Mouse
1347646 48

TTG...

LLV...

TTG Alternative
InCDS
NMD
Overlapping
sORF
E14, Liver, Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

333262 ENSMUST00000159690 Arrdc3-203 nonsense_mediated_decay Ribo-seq
weak 2 sORFs_org_Mouse
673255 ENSMUST00000099356 Arrdc3-201 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
1401820 78

CTG...

LGR...

CTG Alternative
InCDS
NMD
Overlapping
sORF
Liver
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

333262 ENSMUST00000159690 Arrdc3-203 nonsense_mediated_decay Ribo-seq
moderate 1 sORFs_org_Mouse
1305186 123

TTG...

LLI...

TTG Alternative
Downstream
Overlapping
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

26851 ENSMUST00000161441 Arrdc3-205 protein_coding Ribo-seq
1 sORFs_org_Mouse
1138267 150

TTG...

LRE...

TTG Alternative
Downstream
Overlapping
sORF
Liver, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

673255 ENSMUST00000099356 Arrdc3-201 protein_coding Ribo-seq
2 sORFs_org_Mouse
1138138 165

GTG...

VLV...

GTG Alternative
Downstream
Overlapping
sORF
v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

673255 ENSMUST00000099356 Arrdc3-201 protein_coding Ribo-seq
1 sORFs_org_Mouse
1535448 36

TTG...

LPR...

TTG Alternative
InCDS
Overlapping
sORF
Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

673255 ENSMUST00000099356 Arrdc3-201 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
337983 144

TTG...

LPL...

TTG Intronic
sORF
Alternative
InCDS
NMD
Overlapping
R1E, Liver, Brain,
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1848831 ENSMUST00000159856 Arrdc3-204 retained_intron Ribo-seq
moderate 1 sORFs_org_Mouse
333262 ENSMUST00000159690 Arrdc3-203 nonsense_mediated_decay Ribo-seq
1 sORFs_org_Mouse
26560 ENSMUST00000162904 Arrdc3-206 retained_intron Ribo-seq
2 sORFs_org_Mouse
847884 72

TTG...

LIQ...

TTG Alternative
Downstream
NMD
sORF
Liver, NSC, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

333262 ENSMUST00000159690 Arrdc3-203 nonsense_mediated_decay Ribo-seq
moderate 3 sORFs_org_Mouse
1402408 81

TTG...

LRE...

TTG Alternative
Downstream
NMD
sORF
Liver
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

333262 ENSMUST00000159690 Arrdc3-203 nonsense_mediated_decay Ribo-seq
1 sORFs_org_Mouse

Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5