Gene Gm45902 | MetamORF

Gene

ID CARD

Gm45902

Aliases

Gm45902

Chromosome

Transcripts

30 ORFs
2 known transcripts
44 ORF to known transcript associations

MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

ORFs

Display all the transcripts related to the entry.

811175

ENSMUST00000140494

Gm45902-202

protein_coding

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1878315	156	CTG ...	LAA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF Upstream	R1E
814353	231	GTG ...	VVA ...	Ribo-seq	GTG		3	sORFs_org_Mouse	sORF Upstream	B_cell, Neutrophil, R1E
118179	90	ATG ...	MMQ ...	Ribo-seq	ATG		5	sORFs_org_Mouse	Alternative sORF Upstream	B_cell, E14, MEF, Neutrophil
120262	96	TTG ...	LQM ...	Ribo-seq	TTG		5	sORFs_org_Mouse	Alternative sORF Upstream	B_cell, E14, MEF, Neutrophil
1209757	126	ATG ...	MWL ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative sORF Upstream	E14
1010264	45	GTG ...	VKS ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative sORF Upstream	Brain, Liver, Neutrophil
492872	78	GTG ...	VVS ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative sORF Upstream	MEF
966454	255	CTG ...	LGC ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative sORF Upstream	E14
813740	99	GTG ...	VVA ...	Ribo-seq	GTG		4	sORFs_org_Mouse	sORF Upstream	B_cell, MEF, Neutrophil, v6-5
117936	189	GTG ...	VVS ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative sORF Upstream	MEF, Neutrophil, v6-5
101954	114	GTG ...	VVG ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Alternative sORF Upstream	E14, MEF, Neutrophil, v6-5
1206824	111	ATG ...	MQG ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative sORF Upstream	E14
117866	60	TTG ...	LLL ...	Ribo-seq	TTG		6	sORFs_org_Mouse	Alternative sORF Upstream	B_cell, E14, MEF, Neutrophil, v6-5
1878741	165	GTG ...	VVG ...	Ribo-seq	GTG		1	sORFs_org_Mouse	sORF Upstream	R1E
495137	30	TTG ...	LDW ...	Ribo-seq	TTG	moderate	4	sORFs_org_Mouse	Alternative sORF Upstream	B_cell, MEF, Neutrophil, v6-5
117549	57	TTG ...	LLT ...	Ribo-seq	TTG		5	sORFs_org_Mouse	Alternative sORF Upstream	E14, MEF, Neutrophil, v6-5
104186	105	CTG ...	LAA ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative sORF Upstream	E14, MEF, Neutrophil, v6-5
125569	114	ATG ...	MAG ...	Ribo-seq	ATG		5	sORFs_org_Mouse	Alternative sORF Upstream	E14, MEF, Neutrophil, v6-5
1878236	111	GTG ...	VKV ...	Ribo-seq	GTG		1	sORFs_org_Mouse	sORF Upstream	R1E
123696	87	ATG ...	MQG ...	Ribo-seq	ATG		7	sORFs_org_Mouse	Alternative sORF Upstream	B_cell, E14, MEF, Neutrophil, v6-5
1212838	267	ATC ...	IGV ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Alternative sORF Upstream	E14
1878770	105	GTG ...	VKQ ...	Ribo-seq	GTG		1	sORFs_org_Mouse	sORF Upstream	R1E
1211308	261	GTG ...	VHL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative sORF Upstream	E14
1207459	138	ATG ...	MAG ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative sORF Upstream	E14
122556	102	ATG ...	MWL ...	Ribo-seq	ATG		6	sORFs_org_Mouse	Alternative sORF Upstream	B_cell, E14, MEF, Neutrophil
117915	42	GTG ...	VNR ...	Ribo-seq	GTG		5	sORFs_org_Mouse	Alternative sORF Upstream	E14, MEF, Neutrophil, v6-5

49957

ENSMUST00000124331

Gm45902-201

protein_coding

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
104186	105	CTG ...	LAA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative sORF Upstream	Liver
122556	102	ATG ...	MWL ...	Ribo-seq	ATG		5	sORFs_org_Mouse	Alternative sORF Upstream	3T3, Brain, MEF, Spleen_B_cell
492872	78	GTG ...	VVS ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative sORF Upstream	3T3, Spleen_B_cell
50999	78	CTG ...	LAA ...	Ribo-seq	CTG		8	sORFs_org_Mouse	sORF Upstream	3T3, B_cell, Brain, Liver, MEF, Spleen_B_cell, Testis
120262	96	TTG ...	LQM ...	Ribo-seq	TTG		5	sORFs_org_Mouse	Alternative sORF Upstream	3T3, Brain, MEF, Spleen_B_cell
117549	57	TTG ...	LLT ...	Ribo-seq	TTG		5	sORFs_org_Mouse	Alternative sORF Upstream	3T3, Brain, MEF, Spleen_B_cell
118579	33	GTG ...	VKV ...	Ribo-seq	GTG		7	sORFs_org_Mouse	sORF Upstream	3T3, B_cell, Brain, Liver, Spleen_B_cell, v6-5
125569	114	ATG ...	MAG ...	Ribo-seq	ATG		5	sORFs_org_Mouse	Alternative sORF Upstream	3T3, Brain, MEF, Spleen_B_cell
118179	90	ATG ...	MMQ ...	Ribo-seq	ATG		4	sORFs_org_Mouse	Alternative sORF Upstream	3T3, Brain, MEF
117936	189	GTG ...	VVS ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Alternative sORF Upstream	3T3, Brain, MEF, Spleen_B_cell
117915	42	GTG ...	VNR ...	Ribo-seq	GTG		6	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, Brain, MEF, Spleen_B_cell
123696	87	ATG ...	MQG ...	Ribo-seq	ATG		5	sORFs_org_Mouse	Alternative sORF Upstream	3T3, Brain, MEF, Spleen_B_cell
495137	30	TTG ...	LDW ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	Alternative sORF Upstream	3T3, MEF, Spleen_B_cell
50740	87	GTG ...	VVG ...	Ribo-seq	GTG		8	sORFs_org_Mouse	sORF Upstream	3T3, B_cell, Brain, Liver, MEF, Spleen_B_cell, Testis
966454	255	CTG ...	LGC ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative sORF Upstream	BMDC
49956	153	GTG ...	VVA ...	Ribo-seq	GTG		9	sORFs_org_Mouse	sORF Upstream	3T3, Brain, Liver, MEF, Spleen_B_cell, Testis
117866	60	TTG ...	LLL ...	Ribo-seq	TTG		5	sORFs_org_Mouse	Alternative sORF Upstream	3T3, Brain, MEF, Spleen_B_cell
813740	99	GTG ...	VVA ...	Ribo-seq	GTG		1	sORFs_org_Mouse	sORF Upstream	Brain

ORFs

30 ORFs
2 known transcripts
44 ORF to known transcript associations

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF Length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Start codon

The start codon sequence of the ORF.

ORF annotations

A comma-separated list of all the annotations computed by our algorithm for the ORF. This list includes the annotations computed for the ORF for all transcripts. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of all the cell types in which the ORF has already been identified.

Transcripts

Display all the transcripts related to the entry.

1878315

156

CTG...

LAA...

CTG

sORF
Upstream

R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
811175	ENSMUST00000140494	Gm45902-202	protein_coding	Ribo-seq		1	sORFs_org_Mouse

814353

231

GTG...

VVA...

GTG

sORF
Upstream

B_cell, Neutrophil, R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
811175	ENSMUST00000140494	Gm45902-202	protein_coding	Ribo-seq		3	sORFs_org_Mouse

495137

TTG...

LDW...

TTG

Intronic
sORF
Alternative
Upstream

MEF, B_cell, Neutrophil,
v6-5, 3T3, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
101955	ENSMUST00000148167	Hspa14-205	retained_intron	Ribo-seq	moderate	1	sORFs_org_Mouse
811175	ENSMUST00000140494	Gm45902-202	protein_coding	Ribo-seq	moderate	4	sORFs_org_Mouse
49957	ENSMUST00000124331	Gm45902-201	protein_coding	Ribo-seq	moderate	3	sORFs_org_Mouse

118179

ATG...

MMQ...

ATG

Alternative
sORF
Upstream
InCDS
Overlapping

B_cell, E14, MEF,
Neutrophil, 3T3, Brain,
R1E, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
811175	ENSMUST00000140494	Gm45902-202	protein_coding	Ribo-seq		5	sORFs_org_Mouse
49957	ENSMUST00000124331	Gm45902-201	protein_coding	Ribo-seq		4	sORFs_org_Mouse
103779	ENSMUST00000027961	Hspa14-201	protein_coding	Ribo-seq		2	sORFs_org_Mouse

120262

TTG...

LQM...

TTG

Alternative
sORF
Upstream
InCDS
Overlapping

B_cell, E14, MEF,
Neutrophil, v6-5, 3T3,
Brain, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
811175	ENSMUST00000140494	Gm45902-202	protein_coding	Ribo-seq		5	sORFs_org_Mouse
103779	ENSMUST00000027961	Hspa14-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse
49957	ENSMUST00000124331	Gm45902-201	protein_coding	Ribo-seq		5	sORFs_org_Mouse

104186

105

CTG...

LAA...

CTG

Alternative
sORF
Upstream
Intronic

Liver, Brain, R1E,
E14, MEF, Neutrophil,
v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
49957	ENSMUST00000124331	Gm45902-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse
101955	ENSMUST00000148167	Hspa14-205	retained_intron	Ribo-seq	strong	2	sORFs_org_Mouse
811175	ENSMUST00000140494	Gm45902-202	protein_coding	Ribo-seq		4	sORFs_org_Mouse

122556

102

ATG...

MWL...

ATG

Alternative
sORF
Upstream
InCDS
Overlapping

3T3, Brain, MEF,
Spleen_B_cell, R1E, v6-5,
B_cell, E14, Neutrophil

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
49957	ENSMUST00000124331	Gm45902-201	protein_coding	Ribo-seq		5	sORFs_org_Mouse
103779	ENSMUST00000027961	Hspa14-201	protein_coding	Ribo-seq		2	sORFs_org_Mouse
811175	ENSMUST00000140494	Gm45902-202	protein_coding	Ribo-seq		6	sORFs_org_Mouse

492872

GTG...

VVS...

GTG

Alternative
sORF
Upstream
Overlapping

3T3, Spleen_B_cell, MEF,
B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
49957	ENSMUST00000124331	Gm45902-201	protein_coding	Ribo-seq		2	sORFs_org_Mouse
811175	ENSMUST00000140494	Gm45902-202	protein_coding	Ribo-seq		1	sORFs_org_Mouse
103779	ENSMUST00000027961	Hspa14-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse

1209757

126

ATG...

MWL...

ATG

Alternative
sORF
Upstream

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
811175	ENSMUST00000140494	Gm45902-202	protein_coding	Ribo-seq		1	sORFs_org_Mouse

1010264

GTG...

VKS...

GTG

Alternative
sORF
Upstream

Brain, Liver, Neutrophil

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
811175	ENSMUST00000140494	Gm45902-202	protein_coding	Ribo-seq		3	sORFs_org_Mouse

50999

CTG...

LAA...

CTG

sORF
Upstream

3T3, B_cell, Brain,
Liver, MEF, Spleen_B_cell,
Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
49957	ENSMUST00000124331	Gm45902-201	protein_coding	Ribo-seq		8	sORFs_org_Mouse

966454

255

CTG...

LGC...

CTG

Alternative
sORF
Upstream

E14, BMDC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
811175	ENSMUST00000140494	Gm45902-202	protein_coding	Ribo-seq		1	sORFs_org_Mouse
49957	ENSMUST00000124331	Gm45902-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse

117549

TTG...

LLT...

TTG

Alternative
sORF
Upstream
InCDS
Overlapping

3T3, Brain, MEF,
Spleen_B_cell, E14, Neutrophil,
v6-5, B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
49957	ENSMUST00000124331	Gm45902-201	protein_coding	Ribo-seq		5	sORFs_org_Mouse
811175	ENSMUST00000140494	Gm45902-202	protein_coding	Ribo-seq		5	sORFs_org_Mouse
103779	ENSMUST00000027961	Hspa14-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse

813740

GTG...

VVA...

GTG

sORF
Upstream

B_cell, MEF, Neutrophil,
v6-5, Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
811175	ENSMUST00000140494	Gm45902-202	protein_coding	Ribo-seq		4	sORFs_org_Mouse
49957	ENSMUST00000124331	Gm45902-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse

117936

189

GTG...

VVS...

GTG

Alternative
sORF
Upstream

MEF, Neutrophil, v6-5,
3T3, Brain, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
811175	ENSMUST00000140494	Gm45902-202	protein_coding	Ribo-seq		3	sORFs_org_Mouse
49957	ENSMUST00000124331	Gm45902-201	protein_coding	Ribo-seq		4	sORFs_org_Mouse

118579

GTG...

VKV...

GTG

sORF
Upstream

3T3, B_cell, Brain,
Liver, Spleen_B_cell, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
49957	ENSMUST00000124331	Gm45902-201	protein_coding	Ribo-seq		7	sORFs_org_Mouse

125569

114

ATG...

MAG...

ATG

Alternative
sORF
Upstream
InCDS
Overlapping

3T3, Brain, MEF,
Spleen_B_cell, E14, Neutrophil,
v6-5, B_cell, Glioma,
Liver, MESC, R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
49957	ENSMUST00000124331	Gm45902-201	protein_coding	Ribo-seq		5	sORFs_org_Mouse
811175	ENSMUST00000140494	Gm45902-202	protein_coding	Ribo-seq		5	sORFs_org_Mouse
103779	ENSMUST00000027961	Hspa14-201	protein_coding	Ribo-seq		4	sORFs_org_Mouse Johnstone2016

101954

114

GTG...

VVG...

GTG

Alternative
sORF
Upstream
Intronic

E14, MEF, Neutrophil,
v6-5, Brain, R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
811175	ENSMUST00000140494	Gm45902-202	protein_coding	Ribo-seq		4	sORFs_org_Mouse
101955	ENSMUST00000148167	Hspa14-205	retained_intron	Ribo-seq	moderate	2	sORFs_org_Mouse

117915

GTG...

VNR...

GTG

Alternative
sORF
Upstream

3T3, B_cell, Brain,
MEF, Spleen_B_cell, E14,
Neutrophil, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
49957	ENSMUST00000124331	Gm45902-201	protein_coding	Ribo-seq		6	sORFs_org_Mouse
811175	ENSMUST00000140494	Gm45902-202	protein_coding	Ribo-seq		5	sORFs_org_Mouse

1206824

111

ATG...

MQG...

ATG

Alternative
sORF
Upstream

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
811175	ENSMUST00000140494	Gm45902-202	protein_coding	Ribo-seq		1	sORFs_org_Mouse

117866

TTG...

LLL...

TTG

Alternative
sORF
Upstream

B_cell, E14, MEF,
Neutrophil, v6-5, 3T3,
Brain, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
811175	ENSMUST00000140494	Gm45902-202	protein_coding	Ribo-seq		6	sORFs_org_Mouse
49957	ENSMUST00000124331	Gm45902-201	protein_coding	Ribo-seq		5	sORFs_org_Mouse

1878741

165

GTG...

VVG...

GTG

sORF
Upstream

R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
811175	ENSMUST00000140494	Gm45902-202	protein_coding	Ribo-seq		1	sORFs_org_Mouse

123696

ATG...

MQG...

ATG

Alternative
sORF
Upstream
InCDS
Overlapping

3T3, Brain, MEF,
Spleen_B_cell, B_cell, E14,
Neutrophil, v6-5, R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
49957	ENSMUST00000124331	Gm45902-201	protein_coding	Ribo-seq		5	sORFs_org_Mouse
811175	ENSMUST00000140494	Gm45902-202	protein_coding	Ribo-seq		7	sORFs_org_Mouse
103779	ENSMUST00000027961	Hspa14-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse

1878236

111

GTG...

VKV...

GTG

sORF
Upstream

R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
811175	ENSMUST00000140494	Gm45902-202	protein_coding	Ribo-seq		1	sORFs_org_Mouse

1212838

267

ATC...

IGV...

ATC

Alternative
sORF
Upstream

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
811175	ENSMUST00000140494	Gm45902-202	protein_coding	Ribo-seq		1	sORFs_org_Mouse

50740

GTG...

VVG...

GTG

sORF
Upstream

3T3, B_cell, Brain,
Liver, MEF, Spleen_B_cell,
Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
49957	ENSMUST00000124331	Gm45902-201	protein_coding	Ribo-seq		8	sORFs_org_Mouse

1878770

105

GTG...

VKQ...

GTG

sORF
Upstream

R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
811175	ENSMUST00000140494	Gm45902-202	protein_coding	Ribo-seq		1	sORFs_org_Mouse

1211308

261

GTG...

VHL...

GTG

Alternative
sORF
Upstream

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
811175	ENSMUST00000140494	Gm45902-202	protein_coding	Ribo-seq		1	sORFs_org_Mouse

1207459

138

ATG...

MAG...

ATG

Alternative
sORF
Upstream

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
811175	ENSMUST00000140494	Gm45902-202	protein_coding	Ribo-seq		1	sORFs_org_Mouse

49956

153

GTG...

VVA...

GTG

sORF
Upstream

3T3, Brain, Liver,
MEF, Spleen_B_cell, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
49957	ENSMUST00000124331	Gm45902-201	protein_coding	Ribo-seq		9	sORFs_org_Mouse

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