Gene Gm42420 | MetamORF

Gene

ID CARD

Gm42420

Aliases

Gm42420

Chromosome

Transcripts

15 ORFs
1 known transcript
15 ORF to known transcript associations

MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

ORFs

Display all the transcripts related to the entry.

199959

ENSMUST00000126621

Gm42420-201

nonsense_mediated_decay

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1247624	51	GTG ...	VES ...	Ribo-seq	GTG		1	sORFs_org_Mouse	NMD sORF	E14
68381	132	CTG ...	LRS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	NMD sORF	E14
204750	93	CTG ...	LEG ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	NMD sORF	Brain
1247460	51	ATA ...	IFS ...	Ribo-seq	ATA	weak	1	sORFs_org_Mouse	NMD sORF	E14
202049	111	GTG ...	VVA ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	NMD sORF	Brain
204252	57	GTG ...	VYI ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	NMD sORF	v6-5
1561365	201	GTG ...	VTS ...	Ribo-seq	GTG		1	sORFs_org_Mouse	NMD sORF	Brain
197914	60	GTG ...	VVY ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	NMD sORF	v6-5
204855	66	CTG ...	LAV ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	NMD sORF	v6-5
1246509	63	ATT ...	ILW ...	Ribo-seq	ATT		1	sORFs_org_Mouse	NMD sORF	E14
1247121	150	ATT ...	IQP ...	Ribo-seq	ATT		1	sORFs_org_Mouse	NMD sORF	E14
199958	72	CTG ...	LDP ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	NMD sORF	Brain
201228	33	GTG ...	VVL ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	NMD sORF	v6-5
201984	144	TTG ...	LLV ...	Ribo-seq	TTG		1	sORFs_org_Mouse	NMD sORF	NSC
195686	84	CTG ...	LVP ...	Ribo-seq	CTG		2	sORFs_org_Mouse	NMD sORF	E14, v6-5

ORFs

15 ORFs
1 known transcript
15 ORF to known transcript associations

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF Length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Start codon

The start codon sequence of the ORF.

ORF annotations

A comma-separated list of all the annotations computed by our algorithm for the ORF. This list includes the annotations computed for the ORF for all transcripts. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of all the cell types in which the ORF has already been identified.

Transcripts

Display all the transcripts related to the entry.

204855

CTG...

LAV...

CTG

Intronic
sORF
ncRNA
Alternative
InCDS
Overlapping
NMD

Brain, Spleen_B_cell, BMDC,
Liver, R1E, 3T3,
v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
192354	ENSMUST00000146793	Ndufb2-206	retained_intron	Ribo-seq	strong	2	sORFs_org_Mouse
2783	ENSMUST00000002490	Ndufb2-201	processed_transcript	Ribo-seq	strong	4	sORFs_org_Mouse
206692	ENSMUST00000135671	Ndufb2-205	protein_coding	Ribo-seq	strong	1	sORFs_org_Mouse
199959	ENSMUST00000126621	Gm42420-201	nonsense_mediated_decay	Ribo-seq	strong	1	sORFs_org_Mouse

204252

GTG...

VYI...

GTG

Alternative
InCDS
Overlapping
sORF
Intronic
ncRNA
NMD

3T3, BMDC, Brain,
Spleen_B_cell, Liver, R1E,
v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
206692	ENSMUST00000135671	Ndufb2-205	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse
192354	ENSMUST00000146793	Ndufb2-206	retained_intron	Ribo-seq	moderate	3	sORFs_org_Mouse
2783	ENSMUST00000002490	Ndufb2-201	processed_transcript	Ribo-seq	moderate	3	sORFs_org_Mouse
199959	ENSMUST00000126621	Gm42420-201	nonsense_mediated_decay	Ribo-seq	moderate	1	sORFs_org_Mouse

195686

CTG...

LVP...

CTG

ncRNA
sORF
Intronic
NMD

BMDC, E14, Liver,
Neutrophil, R1E, Brain,
Spleen_B_cell, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
2783	ENSMUST00000002490	Ndufb2-201	processed_transcript	Ribo-seq	moderate	5	sORFs_org_Mouse
192354	ENSMUST00000146793	Ndufb2-206	retained_intron	Ribo-seq		5	sORFs_org_Mouse
199959	ENSMUST00000126621	Gm42420-201	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse

68381

132

CTG...

LRS...

CTG

Alternative
InCDS
Overlapping
sORF
NMD
Intronic

C2C12, E14, BMDC,
Brain, Liver, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
206692	ENSMUST00000135671	Ndufb2-205	protein_coding	Ribo-seq		1	sORFs_org_Mouse
199959	ENSMUST00000126621	Gm42420-201	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse
192354	ENSMUST00000146793	Ndufb2-206	retained_intron	Ribo-seq		3	sORFs_org_Mouse
68382	ENSMUST00000119379	Ndufb2-202	protein_coding	Ribo-seq		3	sORFs_org_Mouse

201984

144

TTG...

LLV...

TTG

Intronic
sORF
Alternative
Overlapping
Upstream
NMD

Brain, NSC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
192354	ENSMUST00000146793	Ndufb2-206	retained_intron	Ribo-seq		2	sORFs_org_Mouse
68382	ENSMUST00000119379	Ndufb2-202	protein_coding	Ribo-seq		1	sORFs_org_Mouse
199959	ENSMUST00000126621	Gm42420-201	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

1247624

GTG...

VES...

GTG

NMD
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
199959	ENSMUST00000126621	Gm42420-201	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

204750

CTG...

LEG...

CTG

NMD
sORF

Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
199959	ENSMUST00000126621	Gm42420-201	nonsense_mediated_decay	Ribo-seq	strong	1	sORFs_org_Mouse

1247460

ATA...

IFS...

ATA

NMD
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
199959	ENSMUST00000126621	Gm42420-201	nonsense_mediated_decay	Ribo-seq	weak	1	sORFs_org_Mouse

202049

111

GTG...

VVA...

GTG

NMD
sORF

Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
199959	ENSMUST00000126621	Gm42420-201	nonsense_mediated_decay	Ribo-seq	strong	1	sORFs_org_Mouse

201228

GTG...

VVL...

GTG

Alternative
InCDS
Overlapping
sORF
ncRNA
Intronic
NMD

3T3, MEF, BMDC,
Brain, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
206692	ENSMUST00000135671	Ndufb2-205	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse
2783	ENSMUST00000002490	Ndufb2-201	processed_transcript	Ribo-seq	moderate	4	sORFs_org_Mouse
192354	ENSMUST00000146793	Ndufb2-206	retained_intron	Ribo-seq	moderate	2	sORFs_org_Mouse
199959	ENSMUST00000126621	Gm42420-201	nonsense_mediated_decay	Ribo-seq	moderate	1	sORFs_org_Mouse

1561365

201

GTG...

VTS...

GTG

NMD
sORF

Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
199959	ENSMUST00000126621	Gm42420-201	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

197914

GTG...

VVY...

GTG

Alternative
InCDS
Overlapping
sORF
NMD
ncRNA
Intronic

3T3, v6-5, Liver,
R1E, BMDC, Brain,
Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
206692	ENSMUST00000135671	Ndufb2-205	protein_coding	Ribo-seq	strong	1	sORFs_org_Mouse
199959	ENSMUST00000126621	Gm42420-201	nonsense_mediated_decay	Ribo-seq	strong	1	sORFs_org_Mouse
2783	ENSMUST00000002490	Ndufb2-201	processed_transcript	Ribo-seq	strong	3	sORFs_org_Mouse
192354	ENSMUST00000146793	Ndufb2-206	retained_intron	Ribo-seq	strong	3	sORFs_org_Mouse

1246509

ATT...

ILW...

ATT

NMD
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
199959	ENSMUST00000126621	Gm42420-201	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

1247121

150

ATT...

IQP...

ATT

NMD
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
199959	ENSMUST00000126621	Gm42420-201	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

199958

CTG...

LDP...

CTG

NMD
sORF

Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
199959	ENSMUST00000126621	Gm42420-201	nonsense_mediated_decay	Ribo-seq	moderate	1	sORFs_org_Mouse

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