Gene Gm21987 | MetamORF

Gene

ID CARD

Gm21987

Aliases

Gm21987

Chromosome

Transcripts

13 ORFs
1 known transcript
13 ORF to known transcript associations

MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

ORFs

Display all the transcripts related to the entry.

474462

ENSMUST00000119704

Gm21987-201

protein_coding

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
33510	33	CTG ...	LCL ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, E14
33554	36	GTG ...	VDI ...	Ribo-seq	GTG	strong	4	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, Brain, Liver
33673	69	CTG ...	LER ...	Ribo-seq	CTG	moderate	5	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, B_cell, Brain, Liver, Spleen_B_cell
953078	45	AAG ...	KNT ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
34136	99	TTG ...	LRV ...	Ribo-seq	TTG	moderate	4	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, B_cell, Liver, Spleen_B_cell
34023	57	TTG ...	LRK ...	Ribo-seq	TTG	weak	4	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, Brain, Liver
35052	36	CTG ...	LPR ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Liver, Spleen_B_cell
35605	99	GTG ...	VPA ...	Ribo-seq	GTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, Liver, Spleen_B_cell
34534	93	GTG ...	VCA ...	Ribo-seq	GTG	weak	4	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, B_cell, Liver, Spleen_B_cell
952850	30	AGG ...	RRR ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1185674	45	ATA ...	IVA ...	Ribo-seq	ATA	moderate	1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	E14
34945	36	CTG ...	LLC ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell
33423	108	TTG ...	LGA ...	Ribo-seq	TTG	strong	5	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, B_cell, E14, Liver, Spleen_B_cell

ORFs

13 ORFs
1 known transcript
13 ORF to known transcript associations

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF Length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Start codon

The start codon sequence of the ORF.

ORF annotations

A comma-separated list of all the annotations computed by our algorithm for the ORF. This list includes the annotations computed for the ORF for all transcripts. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of all the cell types in which the ORF has already been identified.

Transcripts

Display all the transcripts related to the entry.

34945

CTG...

LLC...

CTG

Intronic
sORF
Alternative
InCDS
Overlapping

BMDC, MEF, NSC,
Testis, v6-5, Brain,
E14, 3T3, B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
33424	ENSMUST00000144812	Cox17-204	retained_intron	Ribo-seq	moderate	5	sORFs_org_Mouse
368800	ENSMUST00000050273	Cox17-201	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse
35567	ENSMUST00000120495	Cox17-202	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse
474462	ENSMUST00000119704	Gm21987-201	protein_coding	Ribo-seq	moderate	2	sORFs_org_Mouse

34136

TTG...

LRV...

TTG

Alternative
Overlapping
sORF
Upstream
Intronic

MEF, Liver, 3T3,
B_cell, Spleen_B_cell, BMDC,
Brain, E14, Neutrophil,
Testis, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
35567	ENSMUST00000120495	Cox17-202	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse
368800	ENSMUST00000050273	Cox17-201	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse
474462	ENSMUST00000119704	Gm21987-201	protein_coding	Ribo-seq	moderate	4	sORFs_org_Mouse
33424	ENSMUST00000144812	Cox17-204	retained_intron	Ribo-seq	moderate	6	sORFs_org_Mouse

35605

GTG...

VPA...

GTG

Alternative
InCDS
Overlapping
sORF

BMDC, E14, MEF,
Neutrophil, NSC, Testis,
v6-5, Brain, Liver,
R1E, 3T3, B_cell,
Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
35567	ENSMUST00000120495	Cox17-202	protein_coding	Ribo-seq		10	sORFs_org_Mouse
368800	ENSMUST00000050273	Cox17-201	protein_coding	Ribo-seq		4	sORFs_org_Mouse
474462	ENSMUST00000119704	Gm21987-201	protein_coding	Ribo-seq		5	sORFs_org_Mouse

33510

CTG...

LCL...

CTG

Intronic
sORF
Alternative
InCDS
Overlapping

BMDC, MEF, NSC,
Testis, v6-5, 3T3,
B_cell, E14, Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
33424	ENSMUST00000144812	Cox17-204	retained_intron	Ribo-seq	weak	5	sORFs_org_Mouse
474462	ENSMUST00000119704	Gm21987-201	protein_coding	Ribo-seq	weak	3	sORFs_org_Mouse
368800	ENSMUST00000050273	Cox17-201	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse
35567	ENSMUST00000120495	Cox17-202	protein_coding	Ribo-seq	weak	2	sORFs_org_Mouse

33554

GTG...

VDI...

GTG

InCDS
Overlapping
sORF
Intronic

3T3, B_cell, Brain,
Liver, E14, R1E,
BMDC, MEF, Neutrophil,
NSC, Testis, v6-5,
Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
474462	ENSMUST00000119704	Gm21987-201	protein_coding	Ribo-seq	strong	4	sORFs_org_Mouse
35567	ENSMUST00000120495	Cox17-202	protein_coding	Ribo-seq	strong	1	sORFs_org_Mouse
368800	ENSMUST00000050273	Cox17-201	protein_coding	Ribo-seq	strong	1	sORFs_org_Mouse
33424	ENSMUST00000144812	Cox17-204	retained_intron	Ribo-seq	strong	7	sORFs_org_Mouse
375409	ENSMUST00000134709	Cox17-203	retained_intron	Ribo-seq	strong	2	sORFs_org_Mouse

953078

AAG...

KNT...

AAG

InCDS
Overlapping
sORF

BMDC, E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
35567	ENSMUST00000120495	Cox17-202	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse
474462	ENSMUST00000119704	Gm21987-201	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse

33673

CTG...

LER...

CTG

Alternative
Overlapping
sORF
Upstream
Intronic

3T3, B_cell, Brain,
Liver, Spleen_B_cell, R1E,
BMDC, MEF, E14,
Neutrophil, NSC, Testis,
v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
474462	ENSMUST00000119704	Gm21987-201	protein_coding	Ribo-seq	moderate	5	sORFs_org_Mouse
368800	ENSMUST00000050273	Cox17-201	protein_coding	Ribo-seq	moderate	3	sORFs_org_Mouse
35567	ENSMUST00000120495	Cox17-202	protein_coding	Ribo-seq	moderate	3	sORFs_org_Mouse
33424	ENSMUST00000144812	Cox17-204	retained_intron	Ribo-seq	moderate	6	sORFs_org_Mouse

34023

TTG...

LRK...

TTG

Intronic
sORF
InCDS
Overlapping
ncRNA

Brain, MEF, Spleen_B_cell,
3T3, B_cell, Liver,
R1E, BMDC, E14,
Neutrophil, NSC, Testis,
v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
375409	ENSMUST00000134709	Cox17-203	retained_intron	Ribo-seq	weak	3	sORFs_org_Mouse
474462	ENSMUST00000119704	Gm21987-201	protein_coding	Ribo-seq	weak	4	sORFs_org_Mouse
368800	ENSMUST00000050273	Cox17-201	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse
34208	ENSMUST00000152868	Cox17-205	processed_transcript	Ribo-seq		1	sORFs_org_Mouse
33424	ENSMUST00000144812	Cox17-204	retained_intron	Ribo-seq	weak	8	sORFs_org_Mouse

952850

AGG...

RRR...

AGG

Alternative
InCDS
Overlapping
sORF

BMDC, E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
35567	ENSMUST00000120495	Cox17-202	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse
474462	ENSMUST00000119704	Gm21987-201	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse

35052

CTG...

LPR...

CTG

Alternative
InCDS
Overlapping
sORF
Intronic

3T3, B_cell, Liver,
Spleen_B_cell, BMDC, MEF,
Brain, E14, Neutrophil,
Testis, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
474462	ENSMUST00000119704	Gm21987-201	protein_coding	Ribo-seq	moderate	4	sORFs_org_Mouse
35567	ENSMUST00000120495	Cox17-202	protein_coding	Ribo-seq	moderate	2	sORFs_org_Mouse
33424	ENSMUST00000144812	Cox17-204	retained_intron	Ribo-seq	moderate	8	sORFs_org_Mouse

33423

108

TTG...

LGA...

TTG

Intronic
sORF
Alternative
Overlapping
Upstream

BMDC, Brain, E14,
MEF, Neutrophil, Testis,
v6-5, Liver, 3T3,
B_cell, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
33424	ENSMUST00000144812	Cox17-204	retained_intron	Ribo-seq	strong	7	sORFs_org_Mouse
368800	ENSMUST00000050273	Cox17-201	protein_coding	Ribo-seq	strong	2	sORFs_org_Mouse
474462	ENSMUST00000119704	Gm21987-201	protein_coding	Ribo-seq	strong	5	sORFs_org_Mouse

34534

GTG...

VCA...

GTG

Alternative
Overlapping
sORF
Upstream
Intronic

MEF, 3T3, B_cell,
Liver, Spleen_B_cell, Brain,
BMDC, E14, Neutrophil,
Testis, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
35567	ENSMUST00000120495	Cox17-202	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse
474462	ENSMUST00000119704	Gm21987-201	protein_coding	Ribo-seq	weak	4	sORFs_org_Mouse
368800	ENSMUST00000050273	Cox17-201	protein_coding	Ribo-seq	weak	2	sORFs_org_Mouse
33424	ENSMUST00000144812	Cox17-204	retained_intron	Ribo-seq	weak	5	sORFs_org_Mouse

1185674

ATA...

IVA...

ATA

Alternative
Overlapping
sORF
Upstream

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
474462	ENSMUST00000119704	Gm21987-201	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse

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