Gene ENSMUSG00000102049

Gene

ID CARD

ENSMUSG00000102049

Aliases

ENSMUSG00000102049

Chromosome

Transcripts

8 ORFs
1 known transcript
8 ORF to known transcript associations

MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

ORFs

Display all the transcripts related to the entry.

2153532

ENSMUST00000190574

Zbed6-201

protein_coding

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
714954	33	ATG ...	MRL ...	Ribo-seq	ATG	weak	1	Johnstone2016	Alternative InCDS Overlapping sORF	Glioma, Liver, MEF, MESC
912867	54	ATG ...	MKF ...	Ribo-seq	ATG	weak	1	Johnstone2016	Alternative sORF Upstream	Glioma, Liver, MEF, MESC
1297376	135	ATG ...	MGL ...	Ribo-seq	ATG	strong	1	Johnstone2016	sORF Upstream	Glioma, Liver, MEF, MESC
931434	105	ATG ...	MKN ...	Ribo-seq	ATG	weak	1	Johnstone2016	Alternative sORF Upstream	Glioma, Liver, MEF, MESC
946726	258	ATG ...	MFS ...	Ribo-seq	ATG	moderate	1	Johnstone2016	Alternative Overlapping sORF Upstream	Glioma, Liver, MEF, MESC
634401	30	ATG ...	MIT ...	Ribo-seq	ATG	moderate	1	Johnstone2016	Alternative InCDS Overlapping sORF	Glioma, Liver, MEF, MESC
646197	93	ATG ...	MGK ...	Ribo-seq	ATG	moderate	1	Johnstone2016	sORF Upstream	Glioma, Liver, MEF, MESC
672325	51	ATG ...	MKT ...	Ribo-seq	ATG	weak	1	Johnstone2016	Alternative InCDS Overlapping sORF	Glioma, Liver, MEF, MESC

ORFs

8 ORFs
1 known transcript
8 ORF to known transcript associations

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF Length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Start codon

The start codon sequence of the ORF.

ORF annotations

A comma-separated list of all the annotations computed by our algorithm for the ORF. This list includes the annotations computed for the ORF for all transcripts. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of all the cell types in which the ORF has already been identified.

Transcripts

Display all the transcripts related to the entry.

714954

ATG...

MRL...

ATG

Alternative
InCDS
Overlapping
sORF
NMD

Glioma, Liver, MEF,
MESC, 3T3

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
2153532	ENSMUST00000190574	Zbed6-201	protein_coding	Ribo-seq	weak	1	Johnstone2016
2153079	ENSMUST00000179598	Gm38394-201	protein_coding	Ribo-seq	weak	1	Johnstone2016
431302	ENSMUST00000186476	Gm38394-202	nonsense_mediated_decay	Ribo-seq	weak	1	sORFs_org_Mouse

912867

ATG...

MKF...

ATG

Alternative
sORF
Upstream
Intronic
ncRNA
NMD

Glioma, Liver, MEF,
MESC, E14, BMDC,
R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
2153532	ENSMUST00000190574	Zbed6-201	protein_coding	Ribo-seq	weak	1	Johnstone2016
2153079	ENSMUST00000179598	Gm38394-201	protein_coding	Ribo-seq	weak	1	Johnstone2016
475953	ENSMUST00000192107	Zc3h11a-206	retained_intron	Ribo-seq		1	sORFs_org_Mouse
495567	ENSMUST00000191932	Zc3h11a-205	processed_transcript	Ribo-seq		1	sORFs_org_Mouse
431302	ENSMUST00000186476	Gm38394-202	nonsense_mediated_decay	Ribo-seq	weak	1	sORFs_org_Mouse

646197

ATG...

MGK...

ATG

ncRNA
sORF
NMD
Upstream
Intronic

BMDC, 3T3, R1E,
Glioma, Liver, MEF,
MESC, E14,

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
495567	ENSMUST00000191932	Zc3h11a-205	processed_transcript	Ribo-seq		1	sORFs_org_Mouse
431302	ENSMUST00000186476	Gm38394-202	nonsense_mediated_decay	Ribo-seq	moderate	2	sORFs_org_Mouse
2153079	ENSMUST00000179598	Gm38394-201	protein_coding	Ribo-seq	moderate	1	Johnstone2016
2153532	ENSMUST00000190574	Zbed6-201	protein_coding	Ribo-seq	moderate	1	Johnstone2016
475953	ENSMUST00000192107	Zc3h11a-206	retained_intron	Ribo-seq		1	sORFs_org_Mouse
3129587	UNKNOWN_TRANSCRIPT			Predicted		1	Samandi2017

946726

258

ATG...

MFS...

ATG

sORF
Alternative
Overlapping
Upstream
ncRNA

Glioma, Liver,
MEF, MESC, BMDC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
3129587	UNKNOWN_TRANSCRIPT			Predicted		1	Samandi2017
2153079	ENSMUST00000179598	Gm38394-201	protein_coding	Ribo-seq	moderate	1	Johnstone2016
495567	ENSMUST00000191932	Zc3h11a-205	processed_transcript	Ribo-seq		1	sORFs_org_Mouse
2153532	ENSMUST00000190574	Zbed6-201	protein_coding	Ribo-seq	moderate	1	Johnstone2016

1297376

135

ATG...

MGL...

ATG

sORF
Upstream
Intronic
NMD

Glioma, Liver, MEF,
MESC, E14, R1E,

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
2153532	ENSMUST00000190574	Zbed6-201	protein_coding	Ribo-seq	strong	1	Johnstone2016
475953	ENSMUST00000192107	Zc3h11a-206	retained_intron	Ribo-seq		1	sORFs_org_Mouse
431302	ENSMUST00000186476	Gm38394-202	nonsense_mediated_decay	Ribo-seq	strong	1	sORFs_org_Mouse
2153079	ENSMUST00000179598	Gm38394-201	protein_coding	Ribo-seq	strong	1	Johnstone2016
3129587	UNKNOWN_TRANSCRIPT			Predicted		1	Samandi2017

931434

105

ATG...

MKN...

ATG

Alternative
sORF
Upstream
ncRNA

Glioma, Liver, MEF,
MESC, BMDC,

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
2153532	ENSMUST00000190574	Zbed6-201	protein_coding	Ribo-seq	weak	1	Johnstone2016
495567	ENSMUST00000191932	Zc3h11a-205	processed_transcript	Ribo-seq		1	sORFs_org_Mouse
3129587	UNKNOWN_TRANSCRIPT			Predicted		1	Samandi2017
2153079	ENSMUST00000179598	Gm38394-201	protein_coding	Ribo-seq	weak	1	Johnstone2016

634401

ATG...

MIT...

ATG

Alternative
InCDS
Overlapping
sORF
NMD

Glioma, Liver, MEF,
MESC, 3T3

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
2153532	ENSMUST00000190574	Zbed6-201	protein_coding	Ribo-seq	moderate	1	Johnstone2016
431302	ENSMUST00000186476	Gm38394-202	nonsense_mediated_decay	Ribo-seq	moderate	1	sORFs_org_Mouse
2153079	ENSMUST00000179598	Gm38394-201	protein_coding	Ribo-seq	moderate	1	Johnstone2016

672325

ATG...

MKT...

ATG

Alternative
InCDS
NMD
Overlapping
sORF

3T3, Glioma, Liver,
MEF, MESC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
431302	ENSMUST00000186476	Gm38394-202	nonsense_mediated_decay	Ribo-seq	weak	1	sORFs_org_Mouse
2153079	ENSMUST00000179598	Gm38394-201	protein_coding	Ribo-seq	weak	1	Johnstone2016
2153532	ENSMUST00000190574	Zbed6-201	protein_coding	Ribo-seq	weak	1	Johnstone2016

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