Gene AC160637.1 | MetamORF

Gene

ID CARD

AC160637.1

Aliases

AC160637.1

Chromosome

Transcripts

9 ORFs
1 known transcript
9 ORF to known transcript associations

MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

ORFs

Display all the transcripts related to the entry.

83809

ENSMUST00000214037

AC160637.1-201

TEC

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
254619	90	TTG ...	LKS ...	Ribo-seq	TTG	weak	3	sORFs_org_Mouse	sORF	Brain, MEF
86134	132	CTG ...	LFE ...	Ribo-seq	CTG	weak	5	sORFs_org_Mouse	sORF	Brain, MEF, Neutrophil, Testis
261036	120	CTG ...	LRQ ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	sORF	Brain, MEF
83808	135	CTG ...	LLF ...	Ribo-seq	CTG	weak	5	sORFs_org_Mouse	sORF	Brain, MEF, Neutrophil, Testis
258717	63	GTG ...	VEA ...	Ribo-seq	GTG	strong	4	sORFs_org_Mouse	sORF	Brain, MEF, Neutrophil
255150	54	GTG ...	VFS ...	Ribo-seq	GTG	weak	3	sORFs_org_Mouse	sORF	Brain, MEF
266227	81	TTG ...	LCE ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	sORF	Brain, MEF
84614	30	TTG ...	LIV ...	Ribo-seq	TTG	moderate	5	sORFs_org_Mouse	sORF	Brain, MEF, Neutrophil, Testis
87113	117	GTG ...	VRA ...	Ribo-seq	GTG	weak	5	sORFs_org_Mouse	sORF	Brain, MEF, Neutrophil, Testis

ORFs

9 ORFs
1 known transcript
9 ORF to known transcript associations

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF Length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Start codon

The start codon sequence of the ORF.

ORF annotations

A comma-separated list of all the annotations computed by our algorithm for the ORF. This list includes the annotations computed for the ORF for all transcripts. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of all the cell types in which the ORF has already been identified.

Transcripts

Display all the transcripts related to the entry.

254619

TTG...

LKS...

TTG

sORF
Alternative
InCDS
Overlapping

Brain, MEF, 3T3,
BMDC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
83809	ENSMUST00000214037	AC160637.1-201	TEC	Ribo-seq	weak	3	sORFs_org_Mouse
254620	ENSMUST00000163694	Pkm-202	protein_coding	Ribo-seq	weak	3	sORFs_org_Mouse

255150

GTG...

VFS...

GTG

Intronic
sORF
Alternative
InCDS
Overlapping

Brain, MEF, v6-5,
3T3

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
255151	ENSMUST00000213220	Pkm-203	retained_intron	Ribo-seq	weak	3	sORFs_org_Mouse
254620	ENSMUST00000163694	Pkm-202	protein_coding	Ribo-seq		1	sORFs_org_Mouse
83809	ENSMUST00000214037	AC160637.1-201	TEC	Ribo-seq	weak	3	sORFs_org_Mouse

86134

132

CTG...

LFE...

CTG

sORF
Intronic

Brain, MEF, Neutrophil,
Testis, E14, R1E,
v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
83809	ENSMUST00000214037	AC160637.1-201	TEC	Ribo-seq	weak	5	sORFs_org_Mouse
255151	ENSMUST00000213220	Pkm-203	retained_intron	Ribo-seq	weak	4	sORFs_org_Mouse

261036

120

CTG...

LRQ...

CTG

sORF
Alternative
InCDS
Overlapping
Intronic

Brain, MEF, 3T3,
v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
83809	ENSMUST00000214037	AC160637.1-201	TEC	Ribo-seq	moderate	3	sORFs_org_Mouse
254620	ENSMUST00000163694	Pkm-202	protein_coding	Ribo-seq	moderate	2	sORFs_org_Mouse
255151	ENSMUST00000213220	Pkm-203	retained_intron	Ribo-seq	moderate	1	sORFs_org_Mouse

258717

GTG...

VEA...

GTG

Intronic
sORF

Brain, E14, MEF,
v6-5, Neutrophil

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
255151	ENSMUST00000213220	Pkm-203	retained_intron	Ribo-seq	strong	4	sORFs_org_Mouse
83809	ENSMUST00000214037	AC160637.1-201	TEC	Ribo-seq	strong	4	sORFs_org_Mouse

83808

135

CTG...

LLF...

CTG

sORF
Intronic

Brain, MEF, Neutrophil,
Testis, E14, R1E,
v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
83809	ENSMUST00000214037	AC160637.1-201	TEC	Ribo-seq	weak	5	sORFs_org_Mouse
255151	ENSMUST00000213220	Pkm-203	retained_intron	Ribo-seq	weak	4	sORFs_org_Mouse

266227

TTG...

LCE...

TTG

Intronic
sORF
Alternative
InCDS
Overlapping

Brain, MEF, 3T3

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
255151	ENSMUST00000213220	Pkm-203	retained_intron	Ribo-seq	moderate	1	sORFs_org_Mouse
83809	ENSMUST00000214037	AC160637.1-201	TEC	Ribo-seq	moderate	3	sORFs_org_Mouse
254620	ENSMUST00000163694	Pkm-202	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse

84614

TTG...

LIV...

TTG

sORF
Intronic

Brain, MEF, Neutrophil,
Testis, E14, R1E,
v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
83809	ENSMUST00000214037	AC160637.1-201	TEC	Ribo-seq	moderate	5	sORFs_org_Mouse
255151	ENSMUST00000213220	Pkm-203	retained_intron	Ribo-seq	moderate	5	sORFs_org_Mouse

87113

117

GTG...

VRA...

GTG

sORF
Intronic

Brain, MEF, Neutrophil,
Testis, E14, R1E,
v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
83809	ENSMUST00000214037	AC160637.1-201	TEC	Ribo-seq	weak	5	sORFs_org_Mouse
255151	ENSMUST00000213220	Pkm-203	retained_intron	Ribo-seq	weak	4	sORFs_org_Mouse

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