Gene AC034099.1 | MetamORF

Gene

ID CARD

AC034099.1

Aliases

AC034099.1

Chromosome

Transcripts

22 ORFs
2 known transcripts
25 ORF to known transcript associations

MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

ORFs

Display all the transcripts related to the entry.

212760

ENSMUST00000209263

AC034099.1-201

protein_coding

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
228702	156	TTG ...	LTE ...	Ribo-seq	TTG		1	sORFs_org_Mouse	sORF	Brain
876616	36	CTG ...	LLT ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	sORF	v6-5
1098027	48	CTG ...	LDP ...	Ribo-seq	CTG	strong	2	sORFs_org_Mouse	sORF	NSC, v6-5
588529	36	GTG ...	VRR ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	sORF	E14
1320370	99	CTG ...	LPE ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	sORF	E14, NSC
224595	210	GTG ...	VGR ...	Ribo-seq	GTG		2	sORFs_org_Mouse	sORF	Brain
4661	63	ATG ...	MNY ...	Ribo-seq	ATG		4	sORFs_org_Mouse	sORF	Liver, MEF, Neutrophil, v6-5
229679	243	GTG ...	VAS ...	Ribo-seq	GTG		3	sORFs_org_Mouse	sORF	Brain, Neutrophil, NSC
4368	57	GTG ...	VRL ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	sORF	MEF, Neutrophil, v6-5
224268	162	CTG ...	LCL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF	Brain
213126	177	TTG ...	LVP ...	Ribo-seq	TTG		1	sORFs_org_Mouse	sORF	Brain
4352	48	TTG ...	LWT ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	sORF	MEF, v6-5
212759	186	ATG ...	MSS ...	Ribo-seq	ATG		1	sORFs_org_Mouse	sORF	Brain
4467	36	ATG ...	MNY ...	Ribo-seq	ATG		1	sORFs_org_Mouse	sORF	MEF

424258

ENSMUST00000133843

AC034099.1-202

protein_coding

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
4467	36	ATG ...	MNY ...	Ribo-seq	ATG		5	sORFs_org_Mouse	sORF	3T3, B_cell, BMDC, Liver, Spleen_B_cell
4368	57	GTG ...	VRL ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	sORF	3T3, BMDC
228634	87	TTG ...	LLQ ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	sORF	3T3, Liver
215587	69	ATG ...	MAS ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	sORF	Liver
876616	36	CTG ...	LLT ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	sORF	Brain, Liver
220527	72	TTG ...	LMA ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	sORF	3T3, Liver
213040	165	CTG ...	LTS ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	sORF	BMDC, Brain, Liver
221974	84	TTG ...	LQP ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	sORF	3T3, Liver
216751	42	TTG ...	LTS ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	sORF	Liver
215740	99	CTG ...	LES ...	Ribo-seq	CTG	strong	2	sORFs_org_Mouse	sORF	Brain, Liver
217229	120	TTG ...	LEK ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	sORF	BMDC, Brain, Liver

ORFs

22 ORFs
2 known transcripts
25 ORF to known transcript associations

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF Length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Start codon

The start codon sequence of the ORF.

ORF annotations

A comma-separated list of all the annotations computed by our algorithm for the ORF. This list includes the annotations computed for the ORF for all transcripts. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of all the cell types in which the ORF has already been identified.

Transcripts

Display all the transcripts related to the entry.

228702

156

TTG...

LTE...

TTG

sORF
Alternative
Downstream
Overlapping

Brain, BMDC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
212760	ENSMUST00000209263	AC034099.1-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse
212930	ENSMUST00000151120	Ctsd-202	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse

4467

ATG...

MNY...

ATG

sORF
InCDS
Overlapping

3T3, B_cell, BMDC,
Liver, Spleen_B_cell, MEF,
R1E, C2C12, E14,
Skin_tumor

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
424258	ENSMUST00000133843	AC034099.1-202	protein_coding	Ribo-seq		5	sORFs_org_Mouse
212930	ENSMUST00000151120	Ctsd-202	protein_coding	Ribo-seq		2	sORFs_org_Mouse
3629	ENSMUST00000066401	Ctsd-201	protein_coding	Ribo-seq		3	sORFs_org_Mouse
212760	ENSMUST00000209263	AC034099.1-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse

4368

GTG...

VRL...

GTG

sORF
Alternative
InCDS
Overlapping

3T3, BMDC, MEF,
Neutrophil, v6-5, Skin_tumor

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
424258	ENSMUST00000133843	AC034099.1-202	protein_coding	Ribo-seq	moderate	2	sORFs_org_Mouse
212930	ENSMUST00000151120	Ctsd-202	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse
212760	ENSMUST00000209263	AC034099.1-201	protein_coding	Ribo-seq	moderate	3	sORFs_org_Mouse
3629	ENSMUST00000066401	Ctsd-201	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse

876616

CTG...

LLT...

CTG

sORF
Alternative
InCDS
Overlapping

v6-5, Liver, MEF,
R1E, Brain, E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
212760	ENSMUST00000209263	AC034099.1-201	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse
212930	ENSMUST00000151120	Ctsd-202	protein_coding	Ribo-seq	weak	3	sORFs_org_Mouse
424258	ENSMUST00000133843	AC034099.1-202	protein_coding	Ribo-seq	weak	2	sORFs_org_Mouse
3629	ENSMUST00000066401	Ctsd-201	protein_coding	Ribo-seq	weak	2	sORFs_org_Mouse

1098027

CTG...

LDP...

CTG

sORF
Alternative
InCDS
Overlapping

NSC, v6-5, Liver,
E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
212760	ENSMUST00000209263	AC034099.1-201	protein_coding	Ribo-seq	strong	2	sORFs_org_Mouse
212930	ENSMUST00000151120	Ctsd-202	protein_coding	Ribo-seq	strong	1	sORFs_org_Mouse
3629	ENSMUST00000066401	Ctsd-201	protein_coding	Ribo-seq	strong	1	sORFs_org_Mouse

228634

TTG...

LLQ...

TTG

sORF
Alternative
InCDS
Overlapping

3T3, Liver, B_cell,
E14, MEF, Neutrophil,
NSC, v6-5, BMDC,
Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
424258	ENSMUST00000133843	AC034099.1-202	protein_coding	Ribo-seq	weak	2	sORFs_org_Mouse
3629	ENSMUST00000066401	Ctsd-201	protein_coding	Ribo-seq	weak	7	sORFs_org_Mouse
212930	ENSMUST00000151120	Ctsd-202	protein_coding	Ribo-seq	weak	4	sORFs_org_Mouse

220527

TTG...

LMA...

TTG

Alternative
InCDS
Overlapping
sORF

Brain, MEF, R1E,
3T3, Liver, E14,
Neutrophil, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
212930	ENSMUST00000151120	Ctsd-202	protein_coding	Ribo-seq	moderate	3	sORFs_org_Mouse
424258	ENSMUST00000133843	AC034099.1-202	protein_coding	Ribo-seq	moderate	2	sORFs_org_Mouse
3629	ENSMUST00000066401	Ctsd-201	protein_coding	Ribo-seq	moderate	5	sORFs_org_Mouse

221974

TTG...

LQP...

TTG

Alternative
InCDS
Overlapping
sORF

Brain, Liver, MEF,
B_cell, E14, Neutrophil,
NSC, v6-5, 3T3

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
212930	ENSMUST00000151120	Ctsd-202	protein_coding	Ribo-seq	weak	4	sORFs_org_Mouse
3629	ENSMUST00000066401	Ctsd-201	protein_coding	Ribo-seq	weak	9	sORFs_org_Mouse
424258	ENSMUST00000133843	AC034099.1-202	protein_coding	Ribo-seq	weak	2	sORFs_org_Mouse

588529

GTG...

VRR...

GTG

sORF
InCDS
Overlapping

E14, 3T3

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
212760	ENSMUST00000209263	AC034099.1-201	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse
3629	ENSMUST00000066401	Ctsd-201	protein_coding	Ribo-seq	weak	2	sORFs_org_Mouse

1320370

CTG...

LPE...

CTG

sORF
Alternative
InCDS
Overlapping

E14, NSC, Liver,
R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
212760	ENSMUST00000209263	AC034099.1-201	protein_coding	Ribo-seq	moderate	2	sORFs_org_Mouse
212930	ENSMUST00000151120	Ctsd-202	protein_coding	Ribo-seq	moderate	2	sORFs_org_Mouse

215587

ATG...

MAS...

ATG

Alternative
InCDS
Overlapping
sORF

Brain, MEF, R1E,
3T3, E14, Glioma,
Liver, MESC, Neutrophil,
v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
212930	ENSMUST00000151120	Ctsd-202	protein_coding	Ribo-seq	moderate	3	sORFs_org_Mouse
3629	ENSMUST00000066401	Ctsd-201	protein_coding	Ribo-seq	moderate	9	sORFs_org_Mouse Johnstone2016
424258	ENSMUST00000133843	AC034099.1-202	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse

215740

CTG...

LES...

CTG

Alternative
InCDS
Overlapping
sORF

3T3, E14, MEF,
Neutrophil, NSC, v6-5,
Brain, Liver

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
3629	ENSMUST00000066401	Ctsd-201	protein_coding	Ribo-seq	strong	6	sORFs_org_Mouse
212930	ENSMUST00000151120	Ctsd-202	protein_coding	Ribo-seq	strong	4	sORFs_org_Mouse
424258	ENSMUST00000133843	AC034099.1-202	protein_coding	Ribo-seq	strong	2	sORFs_org_Mouse

212759

186

ATG...

MSS...

ATG

Alternative
Downstream
Overlapping
sORF

BMDC, Brain,
Glioma, Liver, MEF,
MESC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
212930	ENSMUST00000151120	Ctsd-202	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse
3011603	UNKNOWN_TRANSCRIPT			Predicted		1	Samandi2017
212760	ENSMUST00000209263	AC034099.1-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse
3629	ENSMUST00000066401	Ctsd-201	protein_coding	Ribo-seq	moderate	1	Johnstone2016

224595

210

GTG...

VGR...

GTG

sORF
Alternative
Downstream
Overlapping

Brain, BMDC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
212760	ENSMUST00000209263	AC034099.1-201	protein_coding	Ribo-seq		2	sORFs_org_Mouse
212930	ENSMUST00000151120	Ctsd-202	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse

4661

ATG...

MNY...

ATG

sORF
Alternative
InCDS
Overlapping

Liver, MEF, Neutrophil,
v6-5, BMDC, R1E,
3T3, C2C12, E14,
Glioma, MESC, Skin_tumor

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
212760	ENSMUST00000209263	AC034099.1-201	protein_coding	Ribo-seq		4	sORFs_org_Mouse
212930	ENSMUST00000151120	Ctsd-202	protein_coding	Ribo-seq		5	sORFs_org_Mouse
3629	ENSMUST00000066401	Ctsd-201	protein_coding	Ribo-seq		5	sORFs_org_Mouse Johnstone2016

229679

243

GTG...

VAS...

GTG

sORF

Brain, Neutrophil, NSC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
212760	ENSMUST00000209263	AC034099.1-201	protein_coding	Ribo-seq		3	sORFs_org_Mouse

4352

TTG...

LWT...

TTG

Alternative
InCDS
Overlapping
sORF

MEF, v6-5, Skin_tumor

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
212930	ENSMUST00000151120	Ctsd-202	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse
212760	ENSMUST00000209263	AC034099.1-201	protein_coding	Ribo-seq	weak	2	sORFs_org_Mouse
3629	ENSMUST00000066401	Ctsd-201	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse

213040

165

CTG...

LTS...

CTG

Alternative
InCDS
Overlapping
sORF

Brain, MEF, R1E,
3T3, E14, Neutrophil,
NSC, v6-5, BMDC,
Liver

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
212930	ENSMUST00000151120	Ctsd-202	protein_coding	Ribo-seq	moderate	4	sORFs_org_Mouse
3629	ENSMUST00000066401	Ctsd-201	protein_coding	Ribo-seq	moderate	8	sORFs_org_Mouse
424258	ENSMUST00000133843	AC034099.1-202	protein_coding	Ribo-seq	moderate	3	sORFs_org_Mouse

216751

TTG...

LTS...

TTG

Alternative
InCDS
Overlapping
sORF

Neutrophil, Brain, Liver,
MEF, R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
3629	ENSMUST00000066401	Ctsd-201	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse
212930	ENSMUST00000151120	Ctsd-202	protein_coding	Ribo-seq	weak	5	sORFs_org_Mouse
424258	ENSMUST00000133843	AC034099.1-202	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse

224268

162

CTG...

LCL...

CTG

sORF

Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
212760	ENSMUST00000209263	AC034099.1-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse

213126

177

TTG...

LVP...

TTG

sORF

Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
212760	ENSMUST00000209263	AC034099.1-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse

217229

120

TTG...

LEK...

TTG

Alternative
InCDS
Overlapping
sORF

3T3, E14, MEF,
Neutrophil, NSC, v6-5,
Brain, Liver, R1E,
BMDC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
3629	ENSMUST00000066401	Ctsd-201	protein_coding	Ribo-seq	moderate	8	sORFs_org_Mouse
212930	ENSMUST00000151120	Ctsd-202	protein_coding	Ribo-seq	moderate	5	sORFs_org_Mouse
424258	ENSMUST00000133843	AC034099.1-202	protein_coding	Ribo-seq	moderate	3	sORFs_org_Mouse

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